BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] (236 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 131/229 (57%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ ++ ++ L+ F V G+ +E+ K + D IILDL L + G Sbjct: 2 IKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + LR + +TP+ +L+ DK+ GL+ GADDY++KPF+ E++AR++AI+RR + Sbjct: 62 DVCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILRRFQ 121 Query: 121 G-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H + L+ GD+ + + V + ++ LT KE++++ L+ + LT++ Sbjct: 122 NTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLTRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV + LR+KL + YI+TV G GY L Sbjct: 182 LLNAVWNYDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKLE 230 >gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 229 Score = 217 bits (553), Expect = 9e-55, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L+ F G + ++ + + D IILD+ L + GFE Sbjct: 6 KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKVDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R+LR P+ +L+ D+V GL+ GADDY++KPF+ ELVAR+RAI+RR Sbjct: 66 VCRSLRARGSM-PILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I GDL +N + V V+G + LT KEYQ+++LL+ + ++E L L Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++G + + IDV I LR+K+ YI TV G GY R+ Sbjct: 185 WEGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKFRD 229 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 129/239 (53%), Gaps = 12/239 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ + L+ ++V GE+ +E + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR++ Sbjct: 64 VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123 Query: 122 HAQ------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 I G+L + + V Q R+ LT KE++++ L+ K L Sbjct: 124 SQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 T+++ L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKPNE 242 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E ++V GE+ ++L + D I+D+ L + GFE Sbjct: 17 KILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGFE 76 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 ++R +R +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 77 LVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 136 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S+ I DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 137 SAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 196 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 197 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 251 >gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 241 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 129/234 (55%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++++A ++ L+ F V V GE+G+ L K FD +ILDL L I G + Sbjct: 4 RILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKIDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + LR K TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RR Sbjct: 64 ICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSAQ 123 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + +I GD+ + + V V + LT KE+++ L+ K LT Sbjct: 124 LSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVLT 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ LN +++ + +I+DV I LR+K+ YI+TV G GY L E Sbjct: 184 RDQLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEEP 237 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 129/239 (53%), Gaps = 12/239 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ + L+ ++V GE+ +E + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR++ Sbjct: 64 VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123 Query: 122 HAQSLIV------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + G+L + + V Q R+ LT KE++++ L+ K L Sbjct: 124 SQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 T+++ L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKSNE 242 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 130/232 (56%), Gaps = 9/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ ++ L+ + V G G++L K FD IILDL L ++ G + Sbjct: 4 RLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR +K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RR Sbjct: 64 VCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRVGH 123 Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + G++ + D V ++G + LT KE++++ L+ K LT++ Sbjct: 124 AQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 184 QLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEEP 235 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 130/232 (56%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ F V + GE+ IE + IILDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DK+ GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 IV GDL + D G R+ LT KE++++ L+ K LT++ L+ Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + +I+DV I LR+K+ YI+T+ G GY L E +++ Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLEEPKRND 235 >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L++ F V G+ ++L + + D +ILD+ L I G E Sbjct: 5 KILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGIDGLE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R R + PV +L+ + DKV GL+ GADDYI+KPF+ ELVAR++A++RR+ Sbjct: 65 VCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRRA 124 Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S + G ++++++ V V+G R T KE++++ LL+ ++E L + Sbjct: 125 DKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + +DV I LR+K+ + +IETV G GY E Sbjct: 185 IWGYDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFNEPE 232 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L+ E F+V V G+ +E + D I+LDL L + G E Sbjct: 5 KVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +L+ + DKV GL+ GADDY++KPF+ ELVAR++AI+RR Sbjct: 65 VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + G+L ++ + V +G + LT KE++++ L+ + L+++ Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++D + +I+DV + LR+K+ + YI+TV G GY + Sbjct: 185 LNAVWDYDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGYKFEGPKE 236 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 13 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 72 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 ++R +R +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 73 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 132 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S+ I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 133 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 192 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 193 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 247 >gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 239 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 ++R +R +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 65 LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S+ I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ + V GE+ ++ + + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ GDL + D + +++ LT KE++++ L K LT+ Sbjct: 124 ASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima] Length = 239 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 ++R +R +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 65 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S+ I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 239 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 ++R +R +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRRL 124 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S+ I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 125 SAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ F V GE+ +E F + IILDL L + G E Sbjct: 4 KILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR+ Sbjct: 64 VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTDL 123 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL + + V + LT KE++++ L+ K LT++ L+ Sbjct: 124 AQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLLS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + +I+DV I LR+K+ YI+TV G GY L E + Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLEEPRR 233 >gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 235 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ L+ +N V GE+G+ L + D IILD+ L + G E Sbjct: 3 KILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR ++ P+ ++S D V GL+ GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 VCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRA 122 Query: 120 RGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + SLI G L +NLD V V+G ++ T KE++++ +L T+EM Sbjct: 123 QYDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREML 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +R+K+ G YI TV G GY E+ Sbjct: 183 LEQVWGFDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKFSED 232 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+R Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLEEPKMNE 240 >gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 231 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E F V + G G+++ + D IILD+ L + G Sbjct: 3 KILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDGLS 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L + P+ +LS DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 63 VCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRRQ 122 Query: 120 RGHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++ D V V G + LT KE++++ L+ +++ L Sbjct: 123 TTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I +R+KL G +IETV G GY +E Sbjct: 183 EQIWGYEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRFKE 230 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 131/237 (55%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 123 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S + GDL + D + +++ LT KE++++ L K LT+ Sbjct: 124 AAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+R Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 126/232 (54%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ F+V GE+ + + IILDL L + G + Sbjct: 4 KILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLDGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR +I TP+ +L+ DKV GL+ GADDY++KPF+ E++AR++AI+RR+ Sbjct: 64 VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTEI 123 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V G+L + + + G + LT KE++++ L+ K LT++ L+ Sbjct: 124 VQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLLS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + +I+DV I LR+K+ YI+TV G GY L E + E Sbjct: 184 AVWNYEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLEEPKRHE 235 >gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 234 Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ F V + GE+ IE F + IILDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 IV GDL + D+ +G R+ LT KE++++ L+ K LT++ L+ Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + +I+DV I LR+K+ YI+T+ G GY L +++ Sbjct: 184 VWNYDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKLEGPKRND 234 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 127/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ +E + D I+LD+ L + G + Sbjct: 4 KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR Sbjct: 64 VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I+ G+L + + + ++ LT KE++++ L K LT++ Sbjct: 124 SSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + L+ +++ + +I+DV I LR K+ + YI+T+ G GY L E +E Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ + V + GE+G EL + D I+LDL L + G E Sbjct: 4 KILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VARI+AI+RR++ Sbjct: 64 VCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQT 123 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + G+L V + + + LT KE++++ L+ K LT++ Sbjct: 124 LIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLEEP 235 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+R Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ + I+ L+ E F V G+ +++ K D I+LD+ L G Sbjct: 3 KILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLPGQDGLS 62 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L S P+ +LS DKV GL+ GADDYI+KPF+ EL+ARI+A +RR Sbjct: 63 VCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRRQ 122 Query: 120 RGHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q L G ++ ++ D V G + LT KE++++ L+ T++ Sbjct: 123 TVENQVLEDAGRITVGKLVIDQDRFVVSYNGIKQDLTPKEFELLRYLARNPGKVFTRDFL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + +DV I +R+KL +IETV G GY +E Sbjct: 183 LEQIWGYDFSGDSRTVDVHIRHIRQKLEQLPDAPQFIETVRGVGYRFKE 231 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ I + LK + V GE+ + + D ++LD+ L + GFE Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR V +L+ DK+ GL+ GADDY+ KPFN EL ARIRA++RR R Sbjct: 68 VCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIRK 127 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I +G ++L V +G + LT +E+ ++ L +++ LN ++ Sbjct: 128 AGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV I +LR+K+ + G YIETVWG GY RE Sbjct: 188 GADYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYRWRE 231 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ +++ ++ L+ F V G+ G + K +FD IILDL L + G + Sbjct: 4 RILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMDGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR +I P+ +L+ DKV GL+ GADDY++KPF+ E+ AR+RAI+RR Sbjct: 64 VCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIEQ 123 Query: 122 H----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 I DL++ V V+ + LT KE++++ L+ K LT+ Sbjct: 124 TGGAVAKNEQGKGKSIQIADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN +++ + +I+DV I LR K+ + YI+T+ G GY L E AK+E Sbjct: 184 DQLLNAVWNYEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLEEPAKNE 240 >gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 263 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 124/235 (52%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++ + L E ++V E+ +++ D I+D+ L + GFE Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R LR +TPV LS DKV GL+ GADDYI+KPF+ E++ARI+A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 120 RGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + AQ ++++ V+V ++ LT E++++ L+ + ++++ Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 263 >gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] Length = 232 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + + L+ E V V GE + + D IILDL L + G E Sbjct: 3 KILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLE 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R P+ +L+ DKV GL+ GADDY++KPF+ ELVARI+A++RR+ Sbjct: 63 LCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRRA 122 Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+L+++ D + V G + +T KE++++ L+ T+E L Sbjct: 123 TRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + +DV I LR+K+ G YIETV G GY R+ Sbjct: 183 KIWGYDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKFRDPE 231 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I G+L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE + D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ I DL + + QG ++ LT KE++++ L+ K LT++ Sbjct: 124 QDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLEEPKGDE 238 >gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + ++ L+ ++ GE+G+++ + D I+LD+ L + GF Sbjct: 3 RILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR ++TP+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RRS Sbjct: 63 VLRILR-QTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L+++L VE G I LT +E+ +++ L + ++EM L Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +V+ +DV I +LR+K+ + YI T G GY E ++ Sbjct: 182 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 230 >gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 237 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + ++ L+ E F V V G + + D IILD+ L + G E Sbjct: 5 RILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGLE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + TP+ +L+ D V GL+ GADDYI KPF+ E+VAR++A +R Sbjct: 65 VCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRAK 124 Query: 120 RG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + +V DL V D V R+ LT KE+++++LL+ + ++E+ Sbjct: 125 RILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSREV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + +DV I LR+KL + YIETV G GY +E Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRFKE 234 >gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V V GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRRLRNKTNV-PILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H LI +S++L TV G + LT KE+Q+++ + TK Sbjct: 123 VLGSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++DG + + V I KLRKK+ +I TVWG GY ++ Sbjct: 183 LFRNVWDGNYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGYKFAGEKDEQ 237 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V + +R + TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A R Sbjct: 65 VCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFNSE 231 >gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E + V V G+ +E+ K D I+LD+ L + G E Sbjct: 5 KILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGLE 64 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + P+ +L+ D + GL+ GADDYI KPF+ E+VAR++A +R Sbjct: 65 VCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRAL 124 Query: 120 RG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R Q V +L+V + + ++ LT KE++++ L++ + T+E+ Sbjct: 125 RILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTREV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + +DV I LR+KL + + +YIETV G GY E Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGYRFVE 234 >gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ + I+ L+ E + V G +E+ K D +ILD+ L + G Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIMLPGMSGL 60 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV + +R + + P+ +LS DK+ GL+ GADDY+ KPF+ ELVAR++A +RR Sbjct: 61 EVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKT---VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + + + V V+G ++ T KE+++++LL+ T+E L Sbjct: 121 LEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEFELLKLLASNPGKVFTREYLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + +DV I +R+K+ + YIETV G GY E K Sbjct: 181 EKIWGYEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGVGYRFGEEKK 231 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 232 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ E + ++ + G++ +E+ K + I+LD+ L + G++ Sbjct: 5 KILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQMDGYD 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R TP+ +++ DKV GL+ GADDYI+KPF+ EL+ARI+A+ R Sbjct: 65 VCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V G ++ LT KE+Q++E+L K LT+E L+ + Sbjct: 125 LLKSTEEPFKFEGLKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I LR+K+ + YIET+ G GY Sbjct: 185 WGYEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGYRF 227 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G+ EL FD IILD+ L ++ G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ G + +L V V G +I LT KE++++ RK + ++ Sbjct: 123 RQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN +++ + + +I+DV I LR+KL Y+ TV G GY +E Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQEPV 234 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+++++ ++ L+ F V + GE+G + D I+LDL L + G E Sbjct: 4 KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ I+ GDL + D ++ LT KE++++ L+ K LT++ Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLEEPKVDE 238 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V + +R TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A R Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFNSE 231 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V + +R TP+ +++ DKV GL+ GADDYI+KPF+ E++AR++A R Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRRR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFNSE 231 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V + +R TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A R Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRF 228 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 133/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D++++ ++ L+ F V G+ ++ FD I+LDL L ++ G E Sbjct: 4 HILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR KI TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RR Sbjct: 64 VCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTKA 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + IV GD+ + D V ++G+++ LT KE++++ L+ K +T++ Sbjct: 124 AKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LN +++ + +I+DV I LR+K+ YI+T+ G GY L KDE Sbjct: 184 LLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEVPLKDE 238 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 129/235 (54%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ + V G++G +L + D I+LDL L + G E Sbjct: 4 KILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI+TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQF 123 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + G L + + + LT KE++++ L+ K+ LT++ Sbjct: 124 VPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E + Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLEEPKGE 238 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+G +L D +ILDL L I G E Sbjct: 4 KILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKIDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + +R K+ P+ +L+ DKV GL+ GADDY++KPF+ E++AR++AI+R Sbjct: 64 VCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQA 123 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R + + GDL V + + + LT KE++++ L+ + LT+ Sbjct: 124 VIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 184 DQLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLEEQ 236 >gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D+K + ++ L+ ++ GE+G++L + D I+LD+ L + GF Sbjct: 4 RILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR ++TP+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RRS Sbjct: 64 VLRILR-QTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++I+ +LS++L VE G I LT +E+ +++ L + ++EM L Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +V+ +DV I +LR+K+ + YI T G GY E ++ Sbjct: 183 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 231 >gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 239 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ ++ + LK E ++V E+ +++ + + D I+D+ L + GFE+ Sbjct: 6 ILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGFEL 65 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R LR TPV LS S DKV GL+ GADDYI+KPF+ E +ARIRAI RR + Sbjct: 66 VRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRRIQ 125 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ ++ + V V+G ++LT E++++ L+ + ++++ Sbjct: 126 QSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRDVL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis] Length = 238 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ LK E + V V GED + L + + +ILD+ + I G Sbjct: 4 IRVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R +R + P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R QSLI L+++L TV G I LT KE+++++ + TK Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + + + V I +LRKK+ +I+TVWG GY Sbjct: 183 LFRNAWSDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKFV 231 >gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 238 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ +E LK F V GE+G+ D IILDL L + G E Sbjct: 27 RVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLDGIE 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR+ Sbjct: 87 VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTVI 146 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H Q G L + D R+ LT KE++++ L+ K LT++ Sbjct: 147 HGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTRDQ 206 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 207 LLSAVWNYDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLEEPKADE 261 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 133/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+++++ ++ L+ F V + GE+G + D I+LDL L + G E Sbjct: 4 KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ I+ GDL + D ++ LT KE++++ L+ K LT++ Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR+K+ + YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLEEPKVDE 238 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL ++DD + ++ L E F V GE+ ++ + D +ILDL + + GFE Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + L+ + P+ ILS + D+V G + G DDY +KPF+ EL R++A++RR Sbjct: 64 TYQKLKAQREV-PIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++++ G+L+++ +TV V ++ LT K+++++ L++ N TK L+ + Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + + V I +LR+K+ YI+TVWG GY Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + V G + +E K ++LDL L + G++ Sbjct: 5 KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYD 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R +R + + PV +++ DK+ GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 65 VCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G++ ++ V +G ++ LT KE++++++L K +T++ L+ + Sbjct: 125 KVDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV + LR+K+ + YIET+ G GY Sbjct: 185 WGYEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGYRF 227 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLIVTGDLSVN---------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGNE 239 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G+ +L FD IILD+ L ++ G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ G + +L V V G +I LT KE++++ RK + ++ Sbjct: 123 RQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN +++ + + +I+DV I LR+KL Y+ TV G GY +E + Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQEPTQ 235 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V V GE+G+ FD I+LDL L G E Sbjct: 4 KILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR + Sbjct: 64 VCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQQ 123 Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + IV GD+ + + + R+ LT KE++++ LS K L Sbjct: 124 MTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRVL 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 T++ L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 184 TRDQLLSAVWNYDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLEEP 238 >gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE + D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + +L + + +G ++ LT KE++++ L+ K LT++ Sbjct: 124 QEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ + YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLEEPKGDE 238 >gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911] gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911] Length = 237 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ +E LK + V GE G + D I+LDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123 Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A G L + + + LT KE++++ L+ K LT++ Sbjct: 124 TAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ +++ + +I+DV + LR+K+ YI+T+ G GY L E Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLEEP 235 >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040570|gb|ACT57366.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF Sbjct: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR Sbjct: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 >gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 234 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L++ + V V G++ +E + + D IILD+ L G + Sbjct: 4 KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ + D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G + + D V + LT KE++++ L R+ +T+E LN Sbjct: 124 VKEVEEVDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + +I+DV I LR KL + I+TV G GY L + Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLERPKE 233 >gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] Length = 237 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLRYKTNV-PILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+ NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G++ +E+ FD I+LD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K++ P+ IL+ D++ GL+ GADDY+SKPF+ E++ARI+AI RR Sbjct: 63 ITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMSQ 122 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G + +L V+V+G +I LT KE++++ RK+ + ++ Sbjct: 123 NEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ ++ + + +I+DV I LR+K+ + Y++TV G GY +E + Sbjct: 183 LLDRIWHFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTFKEPHR 235 >gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus COL] gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus JH1] gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719] gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299] gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115] gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300] gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 132] gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819] gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MR1] gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus COL] gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719] gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299] gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115] gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300] gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus TW20] gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 04-02981] gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819] gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21172] gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21189] gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21193] Length = 234 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L++ + V V G++ +E + + D IILD+ L G + Sbjct: 4 KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ + D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G + + D V + LT KE++++ L R+ +T+E LN Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + +I+DV I LR KL + I+TV G GY L + Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLERPKE 233 >gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330] gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12] gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15] gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330] gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12] gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15] gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G +G+EL FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + G ++ +L V V H I LT KE++++ RK+ + ++ Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV + LR+K+ Y+ TV G GY +E + Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234 >gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + L+ F V D GEDG+ + + E D +ILD+ L I GFE Sbjct: 7 RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE----ELVARIRAIVR 117 VLRALR PV +L+ D+V G + GADDY++KPF+ + A +R R Sbjct: 67 VLRALR-RHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q +V G L++N + V G R+ LT E+Q++ +L+ T++ ++ Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V+ +DV I LR KL IETV G GY Sbjct: 186 VMGPDFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGYRF 229 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++++ ++ L F + G+ +L FD I+LDL L ++ G E Sbjct: 4 RILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++LR K+STP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RRS Sbjct: 64 VCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSAV 123 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q GD+ + + + + + LT KE++++ L+ LT++ Sbjct: 124 PKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LN +++ + +I+DV I LR+K+ YI+TV G GY L + E Sbjct: 184 LLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEMPLRHE 238 >gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED133] gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus JKD6159] gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O46] Length = 234 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L++ + V V G++ +E + + D IILD+ L G + Sbjct: 4 KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ + D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G + + D V + LT KE++++ L R+ +T+E LN Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + +I+DV I LR KL + I+TV G GY L + Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLERPKE 233 >gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus CGS00] Length = 233 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L++ + V V G++ +E + + D IILD+ L G + Sbjct: 4 KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ + D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G + + D V + LT KE++++ L R+ +T+E LN Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + +I+DV I LR KL + I+TV G GY L + Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLERPKE 233 >gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 232 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 132/229 (57%), Gaps = 6/229 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D+ + I+ L+ E +N + + G +++ K + D +ILD+ ++D G Sbjct: 1 MKNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R K + PV +LS S D++ GL+ GADDYI+KPF+ +ELVAR++A+ R Sbjct: 61 YEVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFR 120 Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R I GD+ V+ ++V+ + I L+ KE+++++LL + L ++ Sbjct: 121 RIENLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I LR+KL + YIETV G GY RE Sbjct: 181 LQRVWGYEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRFRE 229 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 205 bits (522), Expect = 3e-51, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 RIL++ED++ + + L L+ E + + G +E K FD ++LDL L Sbjct: 20 RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR + P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 ---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R S ++ ++S+N V V+G ++L+ KE++++EL ++ Sbjct: 140 LLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 128/238 (53%), Gaps = 11/238 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+R Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLR-KKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEEPKMNE 241 >gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] Length = 238 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 11/236 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + ++ +++E F+ + GE ++L DA+ILDL L I Sbjct: 1 MKKTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGID 60 Query: 59 GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G EVL+ +RV + PV +L+ S D+V GL+ GADDY+ KPF ELVAR++A++ Sbjct: 61 GLEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVL 120 Query: 117 RRSR-------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR+ + G + ++ +TV+ +G + LT KE+ ++ L + + Sbjct: 121 RRAEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVI 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 T++ L ++ E + +DV I +LRKK+ YI TV G GY LRE+A Sbjct: 181 TRDEILTKIWGYDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKLREDA 236 >gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 234 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G +G+EL FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + G ++ +L V V H I LT KE++++ RK+ + ++ Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV + LR+K+ Y+ TV G GY +E + Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234 >gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 235 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ ++ L+ ++ V GE + L +FD I+LDL L + G E Sbjct: 3 RVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +++ +S D V GL+ GADDYI+KPF+ E++AR++A++RR Sbjct: 63 VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + GDL+++ D V+ I LT KE++++ + R ++E Sbjct: 123 EEPTDTVPSQQGHRLQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVWSRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++D+ + LR+K+ ++TV G GY Sbjct: 183 QLLEGVWGFDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTFE 232 >gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] Length = 237 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+ NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 238 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L++ + V V GE+ ++ + D ++LD+ L + G E Sbjct: 4 KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ G + + + V + LT KE++++ L R+ +T+E Sbjct: 124 VQSVKEDENDNEDVIIGSIKIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFTGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 237 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLRYKTNV-PILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+ NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ +I+T+WG GY ++ Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFVGEKLED 237 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 11/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 63 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 122 Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 123 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 183 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 239 >gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] Length = 238 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ I DL + + Q ++ LT KE++++ L+ K LT++ Sbjct: 124 QDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGNE 238 >gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51] gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 263 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L+ E + V + G + + + + + + ++LD+ L I G EV Sbjct: 40 ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLEV 99 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R PV +L+ DKV GL+ GADDYI+KPF+ EL+ARIRA +RR + Sbjct: 100 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRLK 159 Query: 121 GHAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + ++LD V V+G I LT KE++++ +L+ T++ L ++ Sbjct: 160 PSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERIW 219 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + LR+K+ YIET+ G GY L+ Sbjct: 220 GYEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRLK 262 >gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 250 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54 RIL++ED++ + + + L+ E + V G +E K +E D +ILDL L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 ---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R ++ D+++N V V+G ++L+ KE++++EL ++ Sbjct: 140 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249 >gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] Length = 237 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ ++L ++ +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++++ L+++L+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L+ F V GE+G+ + D ++LDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R K P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS+ Sbjct: 64 VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q I+ G L + + G I LT KE++++ L R+ +T+E Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LN +++ + +I+DV I LR+K+ YI+TV G GY L +++ Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKLDYPKRND 237 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD + +++ L+ E + V+ + G + ++ + D I+LDL + +I G E Sbjct: 3 KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R+ P+ +L+ DK+ GL+ GADDYI+KPFN E+VARI+A++RR Sbjct: 63 VCRQIRM-HSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q ++ L +N+ TV++QG I T KE +++ LL+ T+E L Sbjct: 122 ISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 ++ + + +D I ++RKK+ +A ++ I+TVWG GY Sbjct: 182 KVWGYDYFGDSRTVDTHIKRIRKKIGSAEESTSFDIKTVWGVGYKFE 228 >gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 250 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-------EFDAIILDLGL 54 RIL++ED++ + + + L+ E + V G IE K + FD IILDL L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 ---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R S ++ D+++N V V+G + L+ KE++++EL ++ Sbjct: 140 LLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249 >gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 253 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54 RIL++ED++ + + + L+ E + V G +E K ++ D +ILDL L Sbjct: 23 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 83 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 142 Query: 115 ---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R ++ D+++N V V+G ++L+ KE++++EL ++ Sbjct: 143 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 202 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 203 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 252 >gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 232 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 237 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + ++ L+ E + V G+ + +++ +ILD+ L D G E Sbjct: 6 RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDTDGVE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S DKV GL+ GADDYI+KPF EL+AR++A +RR Sbjct: 66 VCRTIR-EITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFFV 124 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ ++ GDL ++ D V + + LT E++++ LL+ TK+ Sbjct: 125 LGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQLTSTEFKILLLLAREPGKVFTKKQI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 N ++ + V I +LR K+ + +IETVWG GY + D Sbjct: 185 FNKVWGDDYLEADNNVMVHIRRLRTKIEDDPKNPEFIETVWGIGYRFAGDEND 237 >gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 233 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 133/230 (57%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+ ++A ++ L+ F V G+ G+EL + + I+LDL L ++ G E Sbjct: 4 KVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RRS Sbjct: 64 VCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAP 123 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I GD+ + V QG R+ LT KE++++ L+ K LT++ L+ Sbjct: 124 QESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ + +I+DV I LR+K+ YI+T+ G GY + E + Sbjct: 184 IWNYDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKMEEPTSE 233 >gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 239 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ + LK E + V E+ +++ + E D I+D+ L + GFE+ Sbjct: 6 ILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGMDGFEL 65 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R LR TPV LS S DKV GL+ GADDYI+KPF+ E++ARIRA+ RR + Sbjct: 66 VRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRRIQ 125 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ+ ++ + V V+ ++LT E++++ L+ + ++++ Sbjct: 126 QSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRDVL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ A YI TV G+GY R+ K++ Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKFRDPGKED 239 >gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B] gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B] Length = 239 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++I+D + I L+ E + V + E +E K E D ++D+ L + GFE Sbjct: 5 RIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDGFE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R +R + PV LS DKV GL+ GADDYI+KPF+ EL+ARI+A+ RR Sbjct: 65 FVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124 Query: 120 R------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + IV DL +++D V+++G +++LT E+ ++ L+ + ++ + Sbjct: 125 QLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE G+ + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR++ Sbjct: 64 VCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQT 123 Query: 122 HAQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + G+L + + V Q R+ LT KE++++ L K LT+ Sbjct: 124 LSVQPEETEEPDAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ LN +++ + +I+DV I LR K+ YI+T+ G GY + E Sbjct: 184 DLLLNAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKMEEP 236 >gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 232 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ ++N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V + +R TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A R Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFNSE 231 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD A+ ++ L E F V GE+ + + + D +ILD+ + + G E Sbjct: 73 RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGLE 132 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR A PV L+ + D+V+GL++GADDY+ KPF E LVAR+RA++RR + Sbjct: 133 VLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQA 192 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL ++ T IHLT E++++ L L K+ L ++ Sbjct: 193 ERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWGY 252 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++V++ +LR+KL A G I TV G GYVLRE Sbjct: 253 DFGGNANVLEVYVKQLRQKLE-AEGEPRLIHTVRGVGYVLRE 293 >gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium DO] gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 234 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 124/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G +G+EL FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + G ++ +L V V H I LT KE++++ RK+ + ++ Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV + LR+K+ Y+ T+ G GY +E + Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKFQEPKR 234 >gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ E V GE+ +E + E+D ++LD+ L + GF+ Sbjct: 4 KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + V G++ ++ + + V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 LIWGYDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYFQ 228 >gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + G D + + K + D ++LDL L + G++ Sbjct: 5 KILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLPGMDGYD 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V + +R T + +++ DKV GL+ GADDYI+KPF+ E+VAR++A R Sbjct: 65 VCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V G++ ++ + ++ +G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYVLGNIVIDFEKHSLTKEGKKIELTLKEFELLEVLIKNKGKVMTRDFLLDT 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ + YIET+ G GY Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKYIETIRGIGYRFNSE 231 >gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 232 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R K + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5] gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5] Length = 249 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ + V GE+ +E + E+D ++LD+ L + GF+ Sbjct: 25 KILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKLDGFQ 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 85 VCQQIR-EFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +IV G + ++ +++ V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY + Sbjct: 204 IWGYDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYFQ 248 >gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E + V GE+ IE+ + I+LD+ L GF+ Sbjct: 4 KILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K++ P+ +L+ DKV GL+ GADDY++KPF EL+ARI+A +RR Sbjct: 64 VCKKLR-EKLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q L+ DL ++L + V +G+ + LT +E+++++ L+ + ++E L Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++ +DV I +LR+K+ + +YI+T G GY N Sbjct: 183 VWGYEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229 >gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + + L+ + V GE+ +E K E+D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + +R + P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+R Sbjct: 64 VCQQIR-EFSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGS 122 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + G+L ++ + + V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 KQDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228 >gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I L+ E V GE+ +E K E+D ++LD+ L + GF+ Sbjct: 4 RILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G L ++ +++ V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I +LR+K+ Y+ T WG GY ++ Sbjct: 183 VWGYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQD 228 >gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+ + +D+K + ++ LK E + V V GED + L + + +ILD+ + I G Sbjct: 4 IRVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R +R + P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R QSLI L+++L TV G I LT KE+++++ + TK Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENA 225 + + + + + V I +LRKK+ +I+TVWG GY ++A Sbjct: 183 LFRNAWSDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKFVGEKDA 236 >gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 237 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 237 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L +++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] Length = 237 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V G++ ++L ++ +ILD+ + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] Length = 237 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51] gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ ++ I L L+ + V + GED + L + D ++LDL L I G E Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + IL+ DK+ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G L ++ A + + LT EY ++++ L +E LN ++ Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + K +DV I +LR+K+ + YI+T+WG GY + Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 223 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K +A I+ L+ ENF V + GE+G+ + + +D I++D+ L G Sbjct: 1 MKILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR +++TPV L+ S+ED V GL SG+DDY++KPF EL+AR++A+VRR Sbjct: 61 TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V I LT KEY ++E N LT+ M H++D Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IIDV++ LRKK+ K I T+ G GYVL+E+ Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDKDYS-KKLIHTIRGVGYVLKED 223 >gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 239 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++I+D + I L+ E ++V + E +E K + D ++D+ L I GFE Sbjct: 5 KIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGFE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R +R TPV LS DKV GL+ GADDYI+KPF+ EL+ARI+A+ RR Sbjct: 65 FVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124 Query: 120 RGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q+ +++D V+++G +++LT E+ ++ L+ + ++ + Sbjct: 125 QLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239 >gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ E V GE+ +E K E+D ++LD+ L + GF+ Sbjct: 4 KILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++V G++ ++ + + V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 LIWGYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQ 228 >gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] Length = 237 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L +++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L+ F V G +G + + + D IILDL L + G + Sbjct: 4 KVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMDGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ KI+TP+ +L+ S DK+ GL+ GADDYI+KPF+ E+VAR++AI+RR+ Sbjct: 64 VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + + ++ LT KE++++ L+ L+++ LN Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+DV I LR+K+ YI+TV G GY + Sbjct: 184 VWNFDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGYKME 228 >gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 232 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA ++ L+ E ++V V G G++ + + D ++LD+ L + GF V Sbjct: 4 VLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D++ GL+ GADDY+ KPF+ E +AR+RAI+RRS Sbjct: 64 CRILRQESDV-PIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S++ G + V+ ++ G ++L KE+ ++ L + LT+++ L + Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + +DV I LR+K+ G YI+TV G GY + D Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFEPPSDD 231 >gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++DD+ + + L+ E ++V G + ++ + D ++LD+ L + G+ Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R P+ +L+ D++ GL+ GADDY+ KPF+ +E++AR+RAI RR + Sbjct: 61 GVCKEIR-RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119 Query: 121 GHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ GD ++ +++++ + G + LT EY+++EL ++ + Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + D E + +D I LRKKL + +YI+T++G GY L Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLV 226 >gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 231 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K++ ++ +++ F V G++ I + +D I+LDL L ++ G E Sbjct: 4 RILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR+ +++TP+ +L+ DKV GL+ GADDY++KPF+ +E++AR++AI+RRS+ Sbjct: 64 VCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQL 123 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G+LS+ + E+ + I T KE++++ L+ K ++++ L+ + Sbjct: 124 SNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D + +I+DV I LR K+ + YI+TV G GY + E Sbjct: 184 WDYDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKMEEPV 230 >gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 232 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +E+L+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L+ + V G D +++ K I+LD+ L + G++ Sbjct: 5 KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYD 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R PV +++ DKV GL+ GADDY++KPF+ ELVAR++A+ R Sbjct: 65 VCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V G +S++ D V G ++ LT KE++++++L + +T++ L+ + Sbjct: 125 ALKPVDKCYVFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LR+K+ + YIET+ G GY Sbjct: 185 WGYEYVGETRTVDVHIRHLRQKIEDFDKKPKYIETIRGIGYRFNSEE 231 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 19/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ LA +I L+ ++V G ++ + D I+LD+ L + G E Sbjct: 4 KILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMDGLE 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + TP+ +L+ DKV GL+ GADDY++KPF + EL+AR+RA++RRS Sbjct: 64 VCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRRS 123 Query: 120 RGHAQSLIVT-----------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 G L ++L + V +G I L K+++++ L Sbjct: 124 DYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYLV 183 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + T LT++ L++++ + + +DV + LR+KL I+TV G GYV R Sbjct: 184 RNRGTVLTRDQLLHNVWGYDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYVFR 243 >gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU121] Length = 236 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L++ + V V GE+ ++ + + D I+LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + + V + LT KE++++ L R+ +T+E Sbjct: 124 VNEVEHNETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL I+D++ + I+ L+ E + V G + + K D +ILDL L + G Sbjct: 1 MKILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLPGMSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R A P+ +L+ S +DKV G GADDY++KPF+ EL R++AI+RR++ Sbjct: 61 EICRKIR-ALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTK 119 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + GDL ++ + V+ +G ++LT EY+++ ++ N T+ + Sbjct: 120 NDLPLNDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + ID I LR+K+ + YI+TV+G GY E Sbjct: 180 KAFGYDFDGFDRTIDAHIKNLRQKIEDDPKNPTYIKTVYGAGYKFGEE 227 >gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] Length = 236 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L++ + V V GE+ +E + + D I+LD+ L G E Sbjct: 4 KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ ++ + + V + LT KE++++ L R+ +T+E Sbjct: 124 VNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] Length = 229 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + ++V GE+ ++L K +D I+LD+ L GFE Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL GADDYI+KPFN E+ ARI+AI+RR Sbjct: 64 VCQQIR-EYSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSK 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++ ++ +++ V + I+LT KE+ ++ELL++ ++E LN Sbjct: 123 RDKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228 >gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 231 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K L I+ L+ E + + GE+ +++ K D IILD+ L + GF Sbjct: 4 KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR ++ P+ +L+ DKV GL+ GADDYI+KPF+ ELVAR++A +RR Sbjct: 64 VLKTLR-QSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I +L +++ VE I LT +E++++ L L K ++E L + Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ +DV I +LR+K+ + +I T G GY + Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYFSDE 228 >gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K L I+ L+ E + + GE+ +++ K D IILD+ L + GF Sbjct: 4 KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLKTLR-QSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I +L +++ VE I LT +E++++ L L K ++E L + Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ +DV I +LR+K+ + +I T G GY + Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYFSDE 228 >gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD L +++ L E+++V + GE +E+ + + D I+LD+ L + GFE Sbjct: 4 KVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLSGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ +L+ + DK+ GL+ GADDY++KPF+ EL+AR+RA++RR++ Sbjct: 64 VCRILRKEMNS-PILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQI 122 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I GD+ V++D + + L KE+ ++ L+ K ++E L Sbjct: 123 METKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I LR+K+ N G Y+ TV G GY L Sbjct: 183 KVWGYDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKLE 228 >gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V GE+ ++L ++ +ILDL + I G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRLRNNTNI-PILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++++ L++++ V V I LTGKE ++++ + TK Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ +I+TVWG GY +E Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKYEE 237 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++A + L F + + G+ G EL + I+LDL L + G E Sbjct: 4 KILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++LR K++TP+ +L+ DKV GL+ GADDY++KPF+ E+VARI+A++RR+ Sbjct: 64 VCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRASN 123 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G L V D V + ++ T KE++++ L KN LT++ L Sbjct: 124 VPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++ + +I+DV I LR+K+ + +I+T+ G GY E + Sbjct: 184 SAVWKYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFEEPKE 234 >gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 231 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA ++ L+ E + V V G G+E + D I+LD+ L + GF V Sbjct: 4 ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D++ GL+ GADDYISKPF+ E +ARIRAI+RRS Sbjct: 64 CRILRQESDV-PIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSERQ 122 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G L V+ ++ + L KE+ ++ L + L++++ L + Sbjct: 123 PRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV I LR+K+ YI+TV G GY Sbjct: 183 WGPDFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGYRFEPP 228 >gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] Length = 237 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILD + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231 >gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 236 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ E ++V V + G + +E + + D I+LD+ L + G E Sbjct: 5 KILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPLMDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+ GA+DY++KPF+ EL+AR++A +R Sbjct: 65 VCREVR-KTSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVNT 123 Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G ++ ++ TV Q +I LT +E++++ L+ +T+E Sbjct: 124 VEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + YI T G GY L++ + Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSTPIYIMTRRGVGYYLQDGENE 236 >gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 235 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G+ G++L +FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ GD+ +L V V+G +I LT KE++++ RK + ++ Sbjct: 123 RGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN +++ + + +I+DV I LR+KL Y+ TV G GY +E Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKFQEP 233 >gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905] gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905] Length = 238 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++A ++ L+ + V G++G+E + + I+LDL L + G EV Sbjct: 5 ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R +++TP+ +L+ DKV GL+ GADDY++KPF+ E++AR++A++RR + Sbjct: 65 CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G L V + V +Q + T KE++++ L KN LT++ Sbjct: 125 VVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + +I+DV I LR K+ + +I+T+ G GY E Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEEP 235 >gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DK+ GL GADDYI+KPF+ E+VARI+A++RR Sbjct: 64 EVCRRLRNKTNI-PILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++L+ L+++++ V V G I LTGKE ++++ + TK Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ I+TVWG GY +E Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGYKFVGEKNEE 237 >gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] Length = 237 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DK+ GL GADDYI+KPF+ E+VARI+A++RR Sbjct: 64 EVCRRLRNKTNI-PILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++L+ L+++++ V V G I LTGKE ++++ + TK Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ +I+TVWG GY +E Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKHEE 237 >gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20] gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 235 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V G++ + L + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R + PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIRSKSET-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL+++ A V G I LT +E++++ L+ +T+E Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR +A+ Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235 >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + L L+ E + V GE+ + + D +ILD+ L G+ V Sbjct: 5 ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKDGWTV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R A + P+ +L+ D+V GL GADDY+ KPF+ ELVAR++A++RR+ Sbjct: 65 CREIR-AMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSLA 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L+VN D+ VEV G R+ LT KE++++ L+ ++E L++++ Sbjct: 124 NQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +D I +LR+KL + YI TVWGRGY Sbjct: 184 DYDYLGDPRTVDTHIKRLREKLESGVKQ-RYIRTVWGRGYKFE 225 >gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L] gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L] Length = 237 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ EDDK + + +++ L+ E + V G++ ++L ++ +ILDL + + G Sbjct: 4 IRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 GHAQSLIVTGDLS-------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++L+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDNNYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGYKFV 231 >gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 237 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + ++ L+ E + V GE+ + L ++ +ILDL + + G Sbjct: 4 IRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+++ TV G I+LTGKE ++++ + TK Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 183 LFRNVWDDNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 231 >gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] Length = 237 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + ++ L+ E + V GE+ + L ++ +ILDL + + G Sbjct: 4 IRILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+++ TV G I+LTGKE ++++ + TK Sbjct: 123 VLGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 231 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 19/245 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD A+ S+E L+ E + V G +E+ + D ++LD+ + + G Sbjct: 1 MRVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR PV +L+ + D+V GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 ETCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSV------------------NLDAKTVEVQGHRIHLTGKEYQMIELLS 162 ++ + G + ++ V +G + LT E++++EL Sbjct: 121 LVTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFL 180 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L++ M + ++ P ++VF+ LR+KL A G + TV G GYVLR Sbjct: 181 THPRQVLSRSMIMEKVWGYDFGPSSNSLEVFVSYLRRKLE-AGGEPRLLHTVRGVGYVLR 239 Query: 223 ENAKD 227 E A D Sbjct: 240 EPAAD 244 >gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis CH188] gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis CH188] gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF] Length = 236 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++A ++ L+ + V G++G+E + + I+LDL L + G EV Sbjct: 5 ILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R +++TP+ +L+ DKV GL+ GADDY++KPF+ E++AR++A++RR + Sbjct: 65 CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G L V + V +Q + T KE++++ L KN LT++ Sbjct: 125 VVADDKDVAQEKMYEFGQLRVYPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + +I+DV I LR K+ + +I+T+ G GY E Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEEP 235 >gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8] gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98] gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8] gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98] gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] Length = 236 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ L ++ L+ + + + GE+ +E K D I+LDL L I G + Sbjct: 4 KILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKIDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R+ + P+ +L+ K+ GL+ GADDY++KPFN EL ARI+A++RR + Sbjct: 64 VCQQIRLNSQT-PIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I D +N + V ++G ++LT KE+ ++ LL+ ++E L Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV I +LR+K+ + YI T WG GY R Sbjct: 183 IWGYEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYFR 227 >gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] Length = 266 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + ++ L+ E + V GE+ + L ++ +ILDL + + G Sbjct: 33 IRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLMMPKVDGI 92 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 93 EVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 151 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+++ TV G I+LTGKE ++++ + TK Sbjct: 152 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 211 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 212 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 260 >gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis] gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus faecalis 62] Length = 236 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 RIL++ED++ + + + L+ E F V G +E K FD IILDL L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ ILS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 ---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R S ++ ++++N V V+ + L+ KE++++EL ++ Sbjct: 140 LLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPEFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGYRF 249 >gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 229 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL I+D++ + I+ L+ E ++V+ G + I K + D +ILDL L + G Sbjct: 1 MKILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLMLPGLSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +R A P+ +L+ +DKV G GADDY++KPF+ EL R++AI+RR++ Sbjct: 61 EICSKIR-AISKVPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRRTK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL ++ + V+ G ++LT EY+++ +++ N T+ + Sbjct: 120 DDMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTPNEYKLLTVMAQNPNRVFTRGELIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + ID I LR+K+ + YI+TV+G GY E Sbjct: 180 KVMGYDFEGFDRTIDAHIKNLRQKIEDDPKNPVYIKTVYGAGYKFGEE 227 >gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603] Length = 236 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L++ + V V GE+ ++ + + D I+LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I+ + + + V + LT KE++++ L R+ +T+E Sbjct: 124 VNEVEQSETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++A ++ L+ + V G++G+E + + I+LDL L + G EV Sbjct: 5 ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R +++TP+ +L+ DKV GL+ GADDY++KPF+ E++AR++A++RR + Sbjct: 65 CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G L V + V +Q + T KE++++ L KN LT++ Sbjct: 125 VVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + +I+DV I LR K+ + +I+T+ G GY E Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEEP 235 >gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ + K E+D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + PV +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTR 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A IV GDL ++ +++ V + I+LT KE+ ++ELL L N ++E LN Sbjct: 123 KASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFK 228 >gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] Length = 234 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGSAEKDENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E + VY GE+ +E + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKKYNM-PIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 TPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 183 LLETVWGYDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYLRNPEQE 236 >gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ ARI+AI+RR+R Sbjct: 64 VCQQIR-EFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ +++ V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 EHEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228 >gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] Length = 234 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E + V GE+ I+L K F +ILDL L I G E Sbjct: 6 KILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 VCSKIR-EFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V G + LT E++++ L T+E + Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] Length = 237 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V G++ ++L ++ +ILD+ + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ + +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGYKFV 231 >gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] Length = 236 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 NLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 224 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+K +A ++ L+ ++ V + G DG+ L +D I++D+ L I G Sbjct: 1 MKILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TP L+ + S+ DKV GL GADDYI KPF+ EL+ARIRA +RR Sbjct: 61 EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S + TG+++++ + V +I LT E+ ++E LT+ M H++D Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IDV I +LR KL K I TV GYVL E Sbjct: 181 YNYESFSNVIDVHISRLRNKLEKDF-DKGIIHTVRRVGYVLEE 222 >gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ E V GE+ +E K E+D I+LD+ L + G E Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLTGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR R Sbjct: 64 VCQQIR-EFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRK 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +GDL ++ + + V + G I+LT KE+ ++ELL+ N ++E LN Sbjct: 123 EEAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 LVWGYEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYFQ 228 >gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] Length = 237 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + ++ L+ E + V GE+ + L ++ +ILDL + + G Sbjct: 4 IRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L+++ TV G I+LTGKE ++++ + TK Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 183 IFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 231 >gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ ARI+AI+RR+R Sbjct: 64 VCQQIR-EFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I +GDL ++ +++ V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 EHEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228 >gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + + V GE+ + + K +D I+LDL L + G + Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+R Sbjct: 64 VCQQIR-EFSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ GDL ++ D++ V + ++LT KE+ +++LL N ++E LN Sbjct: 123 PEKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYFQ 228 >gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 229 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + I L+ + V GE+ +++ K E+D ++LDL L + G V Sbjct: 5 VLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVDGLSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 65 CQQIR-EFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGKP 123 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ GDL ++ +++ V + G I+LT KE+ ++ELL ++E L+ Sbjct: 124 AAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLDT 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 184 VWGYEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFQ 228 >gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] Length = 234 Score = 201 bits (511), Expect = 6e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KNSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 237 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKFV 231 >gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 236 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 114/230 (49%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L E + V G + + + D I+LD + ++ G E Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R P+ +L+ + DK+ G + G DDY+ KPF+ EL ARI+ I++R Sbjct: 64 VLREIRKKSQI-PIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ GDL++ + V ++G + LT E++++E ++ L + Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + ID I LRKK+ YI+TV+G GY L+ + + Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEKD 232 >gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGS 122 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ + + V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 DHEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228 >gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235 >gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] Length = 237 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DK+ GL GADDYI+KPF+ E+VARI+A++RR Sbjct: 64 EVCRRLRNKTNI-PILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++L+ L+++++ V V G I LTGKE ++++ + TK Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ +I+T+WG GY +E Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGYKFVGEKHEE 237 >gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I+ L+ E + V GE+ + K ++D ++LD+ L G + Sbjct: 4 KILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDY++KPFN EL ARI+AI+RRS+ Sbjct: 64 VCQLVR-EFSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQH 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G+L + ++++ V ++ ++LT KE+ M+EL + +++ L+ Sbjct: 123 AEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLDT 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V+ +DV + +LR+K+ G YI T WG GY ++ Sbjct: 183 IWGREYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYFKD 228 >gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51] gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+ + + L L++E F + G +E + FD IILDL + + G+ Sbjct: 1 MRILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR P+ +L+ D++ G GADDYI KPF+ EL AR++A++RR Sbjct: 61 TVCKVLRKETQI-PIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLD 119 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++N + + V+G + LT KE+ ++ +L+ T++ L+ + Sbjct: 120 GETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + +D I +LR K + G ++I+TV G GY N + Sbjct: 180 WDFDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYNGR 227 >gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842] gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842] Length = 235 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 124 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235 >gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] Length = 235 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGKDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235 >gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL ++D+ + ++ L E F V G D +++ + + D IILD+ L ++ G++V Sbjct: 4 ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ L+ + + TPV ILS + DKV GL+ GADDYI+KPF+ E+VAR++A +RR Sbjct: 64 LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRKS 123 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + A+ I G L + + + G ++ LT KE++++ LL+ T+++ L Sbjct: 124 APPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDILL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +DV I LR+K+ YIETV GY R+ + Sbjct: 184 EKIWGYDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRFRDTS 233 >gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K L I+ L+SE + V GE+ +EL + FD IILDL + I G Sbjct: 12 MKILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGL 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + P+ +L+ S DK+ G + GADDYI+KPFN EL AR+RA++RR+ Sbjct: 72 QACMRIR-EFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAG 130 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ G + ++ D ++ + LT KE+ +IELL ++E LN Sbjct: 131 MAAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLN 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+KL YI T WG GY + Sbjct: 191 VVWGYEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYFK 236 >gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 250 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 RIL++ED+ + I + L+ + + V G + L + FD ++LDL L Sbjct: 20 RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR + + D+S+ + V V+G I+L+ KEY+++EL ++ Sbjct: 140 LIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249 >gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235 >gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 239 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L+ E + V G G+EL + D I+LD+ L + G E Sbjct: 3 KILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNGLE 62 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R + + PV +LS + D+V GL+ GADDYI+KPF+ ELVARI+A +RR Sbjct: 63 VCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRRI 122 Query: 120 RGHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G L ++ + V V G ++ LT KE++++ L+ + ++ Sbjct: 123 QKEEGREREAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E L ++ + + +DV I +R+KL + IETV G GY RE Sbjct: 183 EQLLEQVWGYDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYCFRE 234 >gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 250 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 RIL++ED+ + I + L+ + + V G + L + FD ++LDL L Sbjct: 20 RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR + + D+S+ + V V+G I+L+ KEY+++EL ++ Sbjct: 140 LIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 130/231 (56%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ E + V V + G+ IEL + + + I+LD+ L G E Sbjct: 4 KILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKDGNE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV +L+ + DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VLREVR-KTQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 IV GDL V+ DA V +G I LT +E++++ L+ +T+E L Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ +I T G GY LR ++ Sbjct: 183 TVWGYDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYLRNPEQE 233 >gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] Length = 229 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + V GE+ ++L K +D I+LD+ L GFE Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I+ GD+ ++ +++ V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RDKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228 >gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +D+K + ++ ++ E + V V GE + L ++D ILDL + I G Sbjct: 10 IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ + DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 70 EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ I ++S+++ TV +G I LT KE +++ + TK Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQ 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + + V I KLRKK+ I+TVWG GY + Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKFVGD 239 >gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 236 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L+ + V V GE+ +E + I+LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V +++R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSAI 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + I+ G + + + V + + LT KE++++ L R+ +T+E Sbjct: 124 VNEAVPVENDEDDILIGSIRIRPEYFEVYREDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 232 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144] gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144] gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus epidermidis FRI909] gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU144] gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU045] gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU028] Length = 236 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L++ + V V GE+ ++ + + + I+LD+ L G E Sbjct: 4 KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I+ G + + + V + + LT KE++++ L R+ +T+E Sbjct: 124 VNEIEKEDVDDEDIIIGSIRIRPEFFEVYKEDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 238 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFF 122 Query: 121 GHAQSLIVTGDLS-------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ V + +NL+ TV I LTGKE ++++ TK Sbjct: 123 VLGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231 >gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 228 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ + V GE+ + L K EFD I+LD+ L + GFE Sbjct: 4 KILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLTGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR++ Sbjct: 64 VCQQVR-EFSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G++ ++ +++ V + ++LT KE+ M+ELL+L +N ++E LN Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ + Y+ T WG GY R Sbjct: 183 VWGYDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYFR 227 >gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241] gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L] gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1] gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9066] gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str. Western North America USA6153] gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger B] gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum] gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str. Australia 94] gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI] gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241] gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L] gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1] gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar anthracis str. CI] gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235 >gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 232 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E + V + G + + + + + + ++LD+ L I G EV Sbjct: 4 ILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R PV +L+ DKV GL+ GADDYI+KPF+ EL+ARIRA +RR + Sbjct: 64 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRLK 123 Query: 121 GHAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + ++LD V V+G I LT KE++++ +L+ T++ L ++ Sbjct: 124 PSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + LR+K+ YIET+ G GY L+ Sbjct: 184 GYEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRLK 226 >gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K +A I+ L+ E+F V V GE+G+ L + +D I++DL L G Sbjct: 1 MRVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR ++TPV L+ ++ED V GL SG+DDY++KPF EL+AR++A++RRS Sbjct: 61 EVIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ + V I LT KEY ++E N LT+ M H++D Sbjct: 121 KDRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ K I TV G GYVL+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKVDRDF-DKKLIHTVRGVGYVLKE 222 >gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590] gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590] Length = 249 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L++ + V V GE+ +E + + D I+LD+ L G E Sbjct: 17 KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKDGIE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 77 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 136 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ ++ + + V + LT KE++++ L R+ +T+E Sbjct: 137 VNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 196 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 197 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 245 >gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] Length = 231 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E F+V G + ++ K + D +ILDL L I G E Sbjct: 4 KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRLR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+L A TV +G ++LT E++++++L N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228 >gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E F+V G + ++ K + D +ILDL L I G E Sbjct: 4 KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR + P+ +L+ DK+ G GADDYI+KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRLR-QFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+L A TV +G ++LT E++++++L N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+ + + L L++E +++ D G +E + FD +ILDL + + G+ Sbjct: 1 MKILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V + LR P+ +L+ D+V G GADDY+ KPF+ EL AR++A++RR Sbjct: 61 TVCKVLRKETKI-PIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLE 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + LI ++N + V V + LT KE+ ++ +L+ + T++ LN + Sbjct: 120 GEPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +D I +LR KL + G ++I+TV G GY Sbjct: 180 WEYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFE 223 >gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 231 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + L E F V V G +E+ + + D IILDL L + GF V Sbjct: 4 VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR PV +LS + EDKVRGL GADDY++KPF+ EL AR++A +RR + Sbjct: 64 CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQ 123 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ V G L ++ + V + H +L KE++++ L+ ++E L+ ++ Sbjct: 124 SQAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +DV + +R+KL G IETV G GY RE A+ Sbjct: 184 GYDYLGGPRTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRFREPAQ 230 >gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 233 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I++ LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + E D IILDL L + G E Sbjct: 52 KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 111 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 112 VAREVR-KTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + GDL+++ DA V +G +I LT +E++++ L+ +T+E Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR ++ Sbjct: 231 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE 283 >gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + D G D I+ K + I+LD+ L + G++ Sbjct: 5 KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYD 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R TP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 65 VCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G +++N + + G ++ LT KE++++ELL + +T++ L+ + Sbjct: 125 TAKSIDKNFGFGKININFEKHEILKDGVKLDLTLKEFEVLELLIKNRGRVMTRDFLLDKV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LR+K+ YIET+ G GY Sbjct: 185 WGYEYIGETRTVDVHIRHLRQKIEEDDKNPKYIETIRGIGYRFNSEE 231 >gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L+ E F V V G + + + + D I+LDL L + G E Sbjct: 3 RILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 63 VCRQVR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I G + ++++ V V G ++ L KE++++E+L LT+ ++ + Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225 >gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] Length = 240 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ L I LK+E + V GE+ +EL + +FD IILDL + I G + Sbjct: 10 KILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDGLQ 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +R + P+ +L+ S DK+ G + GADDYI+KPFN EL AR+RA++RRS Sbjct: 70 ACMRIR-EFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSGA 128 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A + G + ++ + ++ G + LT KE+ ++ELL ++E LN Sbjct: 129 AVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLNV 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + +DV + +LR+KL YI T WG GY L + + Sbjct: 189 VWGYEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYLSSHPE 237 >gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB] gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain [Syntrophus aciditrophicus SB] Length = 245 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + L+ E F V GE+ ++ + + D +ILDL L + G + Sbjct: 16 RILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGLD 75 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R + + PV +L+ DKV GL+ GADDYI+KPFN ELVAR+RA++RRS Sbjct: 76 ICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRRS 135 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L V+ V V G +I L E +++ L+ + +++ L Sbjct: 136 SQRPKEASEGTFTFQGLHVDYRTYQVSVDGKKIELGPTEIKLLRCLTRQPGRVFSRDQLL 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ E + +DV I +LR + YI TV G GY + Sbjct: 196 DAVWGEEAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGYKFAD 243 >gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 230 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L + GF Sbjct: 5 HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKLDGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 65 VCKKVR-EFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A G L++N + V+ G I LT +EY++++ L +K ++E L + Sbjct: 124 SASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +V+ +DV + +LR+K+ + N+I T G GY N Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229 >gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 234 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 135/230 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ LA I+ LKS+++ V + G+ G+EL + +E+D I+LDL L + G Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R TP+ +++G KV+ L +GADDY+ KPFN +EL+AR+RA++RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G L++N + V +G IHLT KEY ++EL +N ++ + HL+ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + P + I LR+KL A N IETV+G GY L +N D+T Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKNVLDQTS 230 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 2/161 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD L I+ L+ F++ + + + ++ + D +ILD+ + +I G E Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R P+ LSG + G Q+GADDYI KP ELV RI + R Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRILNRLERE 618 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 R Q + + +K++ + L ++ + Sbjct: 619 RQRRQLADIDSITGLASRSKSIHDISRMLRLAKRQGEHCCF 659 >gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ L+ E + Y GE+ +++ K D IILD+ L + GF Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLRTLR-QSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++I +L +++ VE I LT +E++++ L L K ++EM L + Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++ +DV I +LR+K+ + I T G GY + + Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYFSDEKQ 230 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + V+ G + +E + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE 236 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + E D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S + GDL+++ DA V I LT +E++++ L+ +T+E Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR ++ Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYLRNPEQE 234 >gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] Length = 242 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +D+K + ++ ++ E + V V GE + L ++D ILDL + I G Sbjct: 10 IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ + DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 70 EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ I ++S+++ TV +G I LT KE +++ +L TK Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQ 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + + V I KLRKK+ I+TVWG GY + Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKFVGD 239 >gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 234 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 R+L++EDD A+ +E L E GE +EL FD ++LD+ L + G Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 EVLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 V R LR + PV +L+ V GL+ GADDYI+KPF+ +L +R+RA +R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RSRGHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R R +AQ+ L +L + V +G ++ LT +E++++ LL+ ++E Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++HL+ G E + DV I LR+K+ YI+TV G GY E Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ L+ E + Y GE+ +++ K D IILD+ L + GF Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLRTLR-QSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ +L +++ VE + LT +E+++++ L L K ++EM L + Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ +DV I +LR+K+ + I T G GY + Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYFSDE 228 >gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus pseudintermedius ED99] Length = 234 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ ++ L+ + V V GE+ ++ K + D I+LD+ L G E Sbjct: 4 RVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS Sbjct: 64 VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + + D V + LT KE++++ L R+ +T+E Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL +I+TV G GY L Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231 >gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 236 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D++ L S++ L +E F V G G+++ + +D I+LD+ L + GF Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + TP+ +L+ D+ L +GADD + KPF+ LVARIRA++RR+ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+++ + V I LT +E+ +ELL K L K+ + H++D Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + I++V+I LRKK+ + G I T+ G GY L E+ Sbjct: 181 YDFEGDSNIVEVYIGYLRKKI-DVPFGTKAITTIRGVGYRLEEDG 224 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235 >gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 230 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L I GF Sbjct: 5 HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKIDGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 65 VCKKVR-EFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L++N + V+ G I LT +EY++++ L +K ++E L + Sbjct: 124 SSTQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + I+ L+ E + V + GED + K +D ++LD+ L I GF Sbjct: 5 HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLPKIDGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +++ + DKV GL+ GADDYI+KPF EL+AR+RA +RR+ Sbjct: 65 VCKKVR-EFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTAL 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G L++N + V+ G + LT +EY++++ L +K ++E L + Sbjct: 124 SSVQDGKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 184 WGYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD L ++ L +E + V GE+ ++ + D ++LDL L + G E Sbjct: 4 RILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ SS D+V GL+ GADDY++KPF+ ELVAR+RA +RR + Sbjct: 64 VCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQL 123 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ L ++ + V G +HLT +E++++ L+ + T+ L Sbjct: 124 DRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLRE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + +D I +LR K+ G YI TVWG GY + + + Sbjct: 184 VWGIDYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGYKFQSSEE 232 >gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++DDK ++ I + LKSE++ V G + ++L K FD +ILD+ + + Sbjct: 1 MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E L +R P+ L+ + D +RGL GADDYISKPF+ EL+AR++A +RR Sbjct: 61 GLETLIHIRKDFNM-PIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRR 119 Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+L ++LD V V G + LT EY+++EL KN + E Sbjct: 120 YTIFNNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + I V I KLR+K+ YI+TVWG GY + Sbjct: 180 ENIWRDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGYKI 225 >gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W] gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W] gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 237 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231 >gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 230 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L I GF Sbjct: 5 HILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKIDGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 65 VCKKVR-EFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L++N + V+ G I LT +EY++++ L +K ++E L + Sbjct: 124 SSAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 234 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 262 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-------EFDAIILDLGL 54 RIL++ED+ ++ +I L L+ E + VY D G D + L + + D IILD+ L Sbjct: 32 RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G +V R+LR +TP+ I+S S +KV GL+ GADDYI+KPF+ +ELVAR RA Sbjct: 92 PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151 Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR + DL + V ++G + L KE++++EL ++ Sbjct: 152 MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + H++ + K +DV I LR+KL Y+ TV G GY Sbjct: 212 EQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261 >gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 EVCRELR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222 >gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ ++ +V GE+ +EL K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHL 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+L ++ +++ V + I+LT KE+ ++ELL N ++E LN Sbjct: 123 EAKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYFQ 228 >gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 EVCRELR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++A+ ++ L E + V D GED + ++D IILD+ L G Sbjct: 1 MRILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R ISTP+ +L+ + S EDKV GL +GADDY+ KPF+ EL+ARIRAI+RR Sbjct: 61 KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ VE G RI LT +EY ++E L N L++ + H+++ Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LRKK+ + I TV G GY++ E Sbjct: 181 LDFYTESNIVDVYIRYLRKKI-DNGFENKLIHTVHGVGYMIGE 222 >gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 230 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L + GF Sbjct: 5 HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKLDGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 65 VCKKVR-EFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G+L++N + V+ G I LT +EY++++ L +K ++E L + Sbjct: 124 SAAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +V+ +DV + +LR+K+ + N+I T G GY N Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229 >gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3] gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3] Length = 233 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + IV G L + DA V+ +G I LT +E++++ L+ +T+E Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQE 236 >gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 EVCRELR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ +L+VNL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222 >gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 239 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 12 ILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGIHM 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 72 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 130 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 131 NGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 191 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 238 >gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+ +D++ + + L L++E F V + G+ +++ K D ++LDL + + G Sbjct: 1 MKTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + V + LR + P+ +L+ D+V GL GADDYI KPF+ ELVAR++A++RR+ Sbjct: 61 WTVCKMLRRERKI-PIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRA 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H ++ +N + +E+ G I+LT KE++++ +L+ +++ L Sbjct: 120 EGIGEKHNSHILSYPGFKLNELTRELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +D I +LR KL YI+T+ G GY Sbjct: 180 EMVWGFDYCGDSRTVDTHINRLRSKLERQPNQDEYIKTIRGVGYKFE 226 >gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 235 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 124 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235 >gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] Length = 232 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDDK + +S+ L+L E + V V G + + K + D ++LD+ L + G+E Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DKV GL+ GADDYI+KPF +EL+ARI A++RR + Sbjct: 63 VCKEIR-KISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 IV ++L +TV+V+G ++L+ +E+++++LL T++M + H++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +DV+I LR+K+ + YI TV GY +E +D Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229 >gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293] gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293] Length = 233 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E++ V GE+ I+L K F IILDL L + G E Sbjct: 6 KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ EDK+ GL GADDY++KPF+ +LVAR++A++RR+ Sbjct: 66 VCSKIR-ESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V G + LT E++++ L T+E + Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 230 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + I+ L+ E + + + GED + K FD ++LD+ L + GF Sbjct: 5 HILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKMDGFT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 65 VCKKVR-EFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S G L++N + V+ G I LT +EY++++ L +K ++E L + Sbjct: 124 QSNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPNV 230 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L I+ L+ E F V D G + ++L + +FD ++LD+ + ++ GF+ Sbjct: 5 RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R KI PV L+ + DK+ GL+ G DDYI+KPF+ EL ARIRA++RR++ Sbjct: 65 VLRRIR-EKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ G + ++L+ KT + G + LT E++++ +L T +++ L ++ Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +D I LRKKL + YI+TV+G GY L Sbjct: 184 GGYYEGYERNLDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ +A + L L+ F V G + +E+ K D ++LDL L I G+EV Sbjct: 10 VLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGWEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + PV +L+ ++DK++G + GADDY+ KPF+ +EL+AR++A++RR+ Sbjct: 70 CRQIR-SNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL+++L++ VEV G ++ LT +E +++ L+ T+E L ++ Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWGFE 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAK 226 + +DV + +LR+KL +I+TVWG GY L E+A Sbjct: 189 FPGNTRTVDVHVNRLREKLDGLPKS-WHIKTVWGVGYKLVVGEDAP 233 >gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 233 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E + V GE+ I+L K F +ILDL L I G E Sbjct: 6 KILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKIFGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 VCSKIR-EFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V G + LT E++++ L T+E + Sbjct: 125 GEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236 >gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 234 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I L L+ E + V + G +E + D +ILD+ + + G EV Sbjct: 6 ILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +ALR +STP+ LS S+ DK GL +G DDY+SKPF+ EL+ARI+A +RR+R Sbjct: 66 CQALR-KNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRIL 124 Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S GDL++NLD +V V G I L+ KE+Q++ LL+ N + E Sbjct: 125 ENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ + + + V I +RKK+ A I+TV G GY Sbjct: 185 FETLWATESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGYKF 231 >gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis raciborskii T3] Length = 272 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 R+L++ED++ + + + L+ E + V G +EL + FD ++LDL L Sbjct: 42 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR S P+ ILS S D+V GL+ GADDY++KPF+ E+VAR RA Sbjct: 102 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161 Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R + D+S+N V V+G + L+ KE++++EL ++ Sbjct: 162 LLRRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 221 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 222 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 271 >gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 232 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R K + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + + GD+ V+ +TV+ + L+ KE+++++LL + L ++ Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ L+ E + Y GE+ +++ K D IILD+ L + GF Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLRTLR-QSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ +L +++ VE + LT +E+++++ L L K ++EM L + Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ +DV I +LR+K+ + I T G GY + Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYFSDE 228 >gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 227 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 132/227 (58%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + +E L ++ ++ + GE G+ + + D ++LD+ L + G Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+ + PV +L+ +E KV L +GADDY++KPF EEL+ARIRA+VRR+ Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++L ++ V G ++ L+ +E+ ++E L L+++ L+ ++D Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +P ++DV++ LR+KL + G + I TV G GY ++ Sbjct: 181 YAFDPGSNVVDVYVRYLRRKL-DRPGEPSLITTVRGAGYRFDPPREE 226 >gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K E+D I+LD+ L GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYTGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R PV +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR Sbjct: 64 VCQMIR-EFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++I+ D+ ++ ++ V V G I+LT KE+ ++ELL+ + ++E LN Sbjct: 123 SVKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYFR 228 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + IV G L + DA V+ +G I LT +E++++ L+ +T+E Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQE 236 >gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] Length = 238 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L + +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRLRNKTNI-PILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++L+ L+++++ TV V I LTGKE ++++ + TK Sbjct: 123 VLGSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ +I+TVWG GY +E Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKFVGEKIEE 237 >gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603] gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I GD+ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + VY GE+ +E E D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL+++ DA V G I LT +E++++ L+ +T+E Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ ++ NY+ T G GY LR ++ Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLRNPEQE 234 >gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA ++ L+ E + V + G G++ + + D ++LD+ L + GF V Sbjct: 4 VLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D++ GL+ GADDYISKPF+ E +AR+RAI+RRS Sbjct: 64 CRILRQESDV-PIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S++ G + V+ ++ G ++L KE+ ++ L + LT+++ L + Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + +DV I LR+K+ YI+TV G GY Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGYRFEPPV 229 >gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 233 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 17 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 77 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 135 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 136 GGSAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 196 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 247 >gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ IL+ S DKV GL+ GADDY++KPF+ EL+AR+RA +RR Sbjct: 64 VCREVRKKYDM-PIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHSQ 122 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I+ G L + DA V +G I LT +E++++ L+ +T+E Sbjct: 123 TVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR ++ Sbjct: 183 LQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 235 >gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein SYNPCC7002_A0851 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] Length = 251 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54 RIL++ED+ + I + L+ E + V+ D G G+ + + EF D +ILD+ L Sbjct: 20 RILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 ++ G ++ R LR + P+ +LS +S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCRA 139 Query: 115 IVRRSRGHAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++RR + + + + + V V+G + L+ KEY+++EL + Sbjct: 140 LLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVWS 199 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 RDQLIEQVWGADFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGYRF 250 >gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 230 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ +D ++LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+R Sbjct: 64 VCQHIR-EFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL ++ +++ + + G ++LT KE+ ++ELL N +E LN Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + +LR+K+ + Y+ T WG GY Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGY 225 >gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] Length = 229 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ L ++ V GE+ +E+ K E+D ++LD+ L + GFE Sbjct: 4 KVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 64 VCQRIR-EFSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSK 122 Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A ++ D++ V V+ + LT KEY ++ELLS N ++E LN Sbjct: 123 RATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V+ +DV I +LR+K+ G YI T WG GY ++ Sbjct: 183 IVWGYDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYFQD 229 >gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1] gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1] gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1] gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1] gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 12/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ + LK + V G D + L F I+LDL L + G E Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ I++ + DKV GL+ GADDYI+KPF+ E++ARI+A++RR+ Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 ++ GDL ++ + V G I LT KE++++ R+ L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ LNH++ E +I+D+ I LR+K+ I TV G GY + Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L + V GE+ +E+ K +D ++LDL L I G Sbjct: 4 KILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKIDGIA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ AR++AI RR Sbjct: 64 VCQQVR-EFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ +I +G L ++ DA+T+++ G I+LT KE+ ++ELL+ ++E Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN ++ +V+ +DV + +LR+K+ A YI+T WG GY +N Sbjct: 183 SLLNTVWGYDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + VY GE+ +E + D I+LDL L + G E Sbjct: 6 KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 66 VAREVR-KTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A S + GDL+++ DA V G I LT +E++++ L+ +T+E Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ ++ NY+ T G GY LR ++ Sbjct: 185 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLRNPEQE 237 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E LK E + V+ G + +++ + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L+ E + V GE+G+E + + D IILDL L I G E Sbjct: 4 KVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVRAKHNT-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L+++ DA TV +G I+LT +E++++ L+ + +E Sbjct: 123 ANTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY L ++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYLANPNQE 235 >gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A ++ L+ F+V + G+ G++ D I+LDL L + G EV Sbjct: 5 VLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLPKLDGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR +I+ P+ +L+ DKV GL+ GADDY++KPF+ E++AR++A++RR G Sbjct: 65 CKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRRFSGP 124 Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+L V + + + T KE++++ L KN LT++ Sbjct: 125 VVEETVESSEVVYTFGNLKVFPERFEAFIDDESLEFTPKEFELLVYLLENKNRVLTRDQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV I LR K+ + YI+T+ G GY E K Sbjct: 185 LSAVWNYDFAGDTRIVDVHISHLRDKIEENSRKPLYIKTIRGLGYKFEEPKK 236 >gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 237 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231 >gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E F+V G + ++ K + D +ILDL L I G E Sbjct: 4 KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR + P+ +L+ DK+ G GADDYI+KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRLR-QFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+L A TV +G ++LT E++++++L N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIRTVYGVGYKFGD 228 >gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 235 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V G++ + + + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIRSKSEI-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 AQ T GDL+++ A V G I LT +E++++ L+ +T+E Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR A+ Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPEAE 235 >gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++I+D + + L+ E ++V + E ++ K + D I+D+ L ++ GFE Sbjct: 6 IMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDGFEF 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R +R PV LS DKV GL+ GADDYI KPF+ EL+ARIRA+ RR + Sbjct: 66 VRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQ 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 IV DL +++D V V+G ++ LT E+ ++ L+ + ++++ Sbjct: 126 LGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ + Y+ TV G+GY R+ K+E Sbjct: 186 LDKLWGYDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKFRDPGKEE 239 >gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 233 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 235 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + +L+ E F+V V G I+ + Y D I+LDL L I G E Sbjct: 3 KILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDGLE 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR PV +++ S DK+ GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRRR 122 Query: 120 RGHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G + G L V V + G ++ LT KEY+++ LL +++ Sbjct: 123 TGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSRD 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ + + +DV I LR+K+ +IETV G GY +E Sbjct: 183 FLLSTIWGFDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRFKE 233 >gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 234 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L++E++ V G++ ++ + FD IILDL L + G + Sbjct: 3 KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R KI TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARI+AI RRS+ Sbjct: 63 VTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + I G ++++ + GHR+ LT KE++++ + R TL+++ Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++ E +++D+ + LR K+ +Y++TV G GY + + Sbjct: 183 LNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE 234 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++++ I L L + + V GE+ ++ K + D ++LD+ L I GF Sbjct: 6 IKILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + + T V +L+ DK+ GL+ GADDYI KPFN EL ARI+A++RR Sbjct: 66 EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ G L +++ A + I LT E+ +++ + L + LN + Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + K +DV I +LR+K+ + +YI+TVWG GY ++ + Sbjct: 186 WGENYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYRWQQES 232 >gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + V G D ++ + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE 236 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A G L + DA V+ +G I LT +E++++ L+ +T+E Sbjct: 123 TATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 236 >gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 237 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 130/236 (55%), Gaps = 12/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V G++ + + + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIRSKSET-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 AQ+ GDL+++ A V G I LT +E++++ L+ + +T Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E L ++ +V+ +DV + +LR+K+ + N++ T G GY LR +A+ Sbjct: 182 REHLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 237 >gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +D+K + ++ ++ E + V V GE + L ++D ILDL + I G Sbjct: 10 IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ + DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 70 EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ I ++S+++ V +G I LT KE +++ + TK Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQ 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + + V I KLRKK+ I+TVWG GY + Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKFVGD 239 >gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 228 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I L L+ E F V V GE+ + F D +ILD+ L + G+ V Sbjct: 6 ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++TP+ +L+ D+V GL+ GADDY+ KPF+ ELVARI+A++RR+RG Sbjct: 66 CREIR-KTMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARGG 124 Query: 123 AQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S V V+ VEV G + L KE++++ L+ ++E L +++ Sbjct: 125 RDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVWA 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I +LR+KL A K YI TVWGRGY Sbjct: 185 YDYLGDTRTVDTHIKRLREKLE-AGSEKRYIRTVWGRGYKFE 225 >gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++A+A IE+ L +E + V D G D + + + D ++LD+ + + G EV Sbjct: 6 ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIMMPGMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 RA+R + P+ +LS S DK+ GL++GADDY++KPFN ELVAR++A +RR Sbjct: 66 CRAIRRERNV-PILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRRYLSL 124 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G L ++ ++V G I LT E+ ++ LL+ + E Sbjct: 125 NPASAAAREPGVLAVGGLRIDPLGRSVFKDGREIALTPTEFDILLLLASHPGRVFSSEEI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I +LR+K+ + I TVWG GY + + Sbjct: 185 FERVWKEHYFQSNNTVMVHIRRLREKVEDDPSHPTLIRTVWGVGYKIEK 233 >gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W] gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8] gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8] Length = 225 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL++DD A+ + L+ F V + GE +EL + D +ILDL L + G Sbjct: 1 MKVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELF--PQADLVILDLMLPKVGGL 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ IL+ ED+V GL+ GADDY+ KPF+ E+VAR++A++RR+ Sbjct: 59 EVARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRAG 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L + + + G + L+ E+ ++ L+ ++E L ++ Sbjct: 119 LREELVY--GPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWG 176 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++DV I LRKKL + +IETV G GY ++ Sbjct: 177 PGFPGVDRVVDVHIAALRKKLGDDPENPRFIETVRGVGYRFKDP 220 >gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] Length = 237 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 8/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++D + + V I KLRKK+ +I+TVWG GY ++ Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKFVGEKLED 237 >gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676] gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550] gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550] gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676] gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E + VY GE+ + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S I G L ++ DA V +G I LT +E++++ L+ +T+E L Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + +I T G GY LR+ ++ Sbjct: 183 TVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRQTEQE 233 >gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185] gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] Length = 229 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ + V GE+ +E+ K +D I+LDL L + GFE Sbjct: 4 KILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+L ++ + + V + + I+LT KE+ ++ELL +N ++E L+ Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ G YI T WG GY + Sbjct: 183 IIWGSDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYFK 228 >gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein sphR gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942] gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 257 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---------YEFDAIILDL 52 RIL++ED+ + + L+L+ E F V V G + + D ++LDL Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L + G + R LR ++ P+ +LS + D+V GL+ GADDY++KPF ELVAR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RAIVRRSRGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RA++RRS+ L + + V + + L+ KE++++EL Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ L ++ + K IDV I LR+K+ +Y+ TV G GY L Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V + GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 233 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ +D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+R Sbjct: 64 VCQHIR-EFSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAG 122 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL ++ +++ + + ++LT KE+ ++ELL N ++E LN Sbjct: 123 SQPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + +LR+K+ Y+ T WG GY Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGY 225 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E ++V+ G + ++ + + D I+LD+ L G E Sbjct: 6 KILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKDGME 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 66 VCREIRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S I G L+++ DA TV +G I LT +E++++ L+ +T+E L Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 185 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE 236 >gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 233 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E++ V GE+ I+L K F IILDL L + G E Sbjct: 6 KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 VCSKIR-ESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V +G + LT E++++ L T+E + Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 232 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G Sbjct: 1 MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +EVL+ +R K + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++R Sbjct: 61 YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R R + + GD+ V+ +TV+ + L+ KE+++++LL + L ++ Sbjct: 121 RVESLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 242 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGFE 61 I+++EDD A++ + L L E + V ++ ++ + + D I+D+ L + GF+ Sbjct: 6 IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGSMDGFD 65 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 ++R L+ +TPV ILS DKV GL+ G+DDY++KPFN EL+ARI++I R Sbjct: 66 LIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRRQ 125 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + I DL ++ + V V G+ + LT E+ ++ L+ + ++++ Sbjct: 126 AASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRDV 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+ Sbjct: 186 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 239 >gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 248 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-----YEFDAIILDLGLTDI 57 +L++ED++ + I L L+ E + V G + + + Y D +ILDL L + Sbjct: 21 VLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLPQV 80 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ EL+AR RA++R Sbjct: 81 NGLDLCRLLRYRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRALIR 140 Query: 118 RSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + V V+G ++L+ KE++++EL +++ Sbjct: 141 RQHLNGITPTPVQQFREIKLYPQECRVTVRGEDVNLSPKEFRLLELFINNPRRVWSRDQL 200 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 201 IDQVWGMDFVGDTKTVDVHIRWLREKLEEDPSKPEYLITVRGFGYRF 247 >gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] Length = 239 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E + V GE+ I+L K F +ILDL L + G E Sbjct: 12 KILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGEE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 72 VCSKIR-ESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 130 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V +G+ + LT E++++ L T+E + Sbjct: 131 GKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 191 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 235 >gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 231 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + ++ L+ E F+V G + + K + D +ILDL L I G E Sbjct: 4 KIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRIR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+L A TV+ +G ++LT E+++++LL N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDLKAHTVKKKGVVVNLTPNEFKILKLLIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228 >gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271] Length = 233 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 225 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ L E ++V GE+G+EL +D +ILD+ + I G+ Sbjct: 7 KILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDGWS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R P+ +L+ + D++ G + D+Y+ KPFN + LVA+++A+ R + Sbjct: 67 VCRKIREESQV-PIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL ++ + V++ + LT KEY ++ K L++E LN ++ Sbjct: 126 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D I +LRKK+ + +I+TV G GY + Sbjct: 186 WDYFGDSRTVDTHIKRLRKKIGDN-----FIQTVRGFGYKFEGD 224 >gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] Length = 246 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDIP 58 R+L++EDD ++ +++ L++E F+V G + + D I+LDL L + Sbjct: 17 RLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLG 76 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V R LR I+TP+ ++S S D+V GL+ GADDY+ KPF ELVAR RA++RR Sbjct: 77 GLDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALLRR 136 Query: 119 SRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ Q +L + + V G + L+ KEY+++EL +++ Sbjct: 137 TQQKPQQDEQRSNVLSHDNLCLYPEECRVTRDGQELTLSPKEYKILELFMQHPKRVWSRD 196 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+K+ + +I TV G GY Sbjct: 197 QLLEKVWGIDFVGDTKTVDVHIRWLREKIESEPSSPKHIRTVRGFGYRF 245 >gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI] gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 233 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 233 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W] gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W] Length = 233 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 250 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 RIL++ED+ + + L L+ E + V G +EL + FD ++LDL L Sbjct: 20 RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G ++ R +R + P+ ILS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PSVNGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR S V V+G I+L+ KE++++EL ++ Sbjct: 140 LLRRQSFSTISANPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIEQVWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249 >gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + +E+ D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR + PV +L+ S DK+ GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRSLR-QRSKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRRRGD 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V+G ++ L KE++++E+L LT+ ++ + Sbjct: 122 AEEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I +LR K+ YI TV G GY Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGYKFE 225 >gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621] gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621] Length = 233 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E ++V+ G + +E+ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ L + L+ F V G +E + + D +ILD+ L + G V Sbjct: 6 ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVLDGLAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + + + + D+V GL++GADDY++KPF ELVAR+RA++RR R Sbjct: 66 CRRLRTFSDAYILML-TARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRRPRHT 124 Query: 123 AQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ G L ++ A TV + G + LT EY ++ +++ ++ L+ + Sbjct: 125 EVSMPSSLIHYGGLVIDPVAHTVALDGQLLTLTPIEYALLSVMAAAPGRVFSRTQLLDRI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I LRKKL + YI TV G GY E Sbjct: 185 WGHDYFGDEHVVEVHITNLRKKLGDNPNRPQYIFTVRGIGYRFGE 229 >gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 234 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F + + G++ IE + D ++LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V G + +N +A +V + I LT +E++++ L+ +T+E L Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + I T G GY LR+ ++ Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGYYLRDPEQE 234 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E + V+ GE+ +E + E D IILDL L + G E Sbjct: 3 KILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + GDL+++ DA V +G +I LT +E++++ L+ +T+E Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR ++ Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE 234 >gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L] gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L] gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 233 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKIREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 234 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 8/233 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL +D++++ L+ E + V G+D ++L Y I+LD+ + G+ V Sbjct: 4 ILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQDGWHV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +RV++ + P+ +L+ + D++ GL GADDY+ KPF+ +ELV R+ I+RR Sbjct: 64 AEQVRVSRDT-PIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRRVYRT 122 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 SLI G+L ++ D + VE I LT KEY ++ LLS +K + Sbjct: 123 GGVKEEQPSLIRFGELKIDTDRRLVERNRKEIELTVKEYDLLVLLSRHPKQVFSKSQLIE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + + ++V I +LR+K+ +I TVWG GY E +DE+ Sbjct: 183 KVWGYEYDGDANTVNVHIRRLREKIEMDPSNPQFIHTVWGIGYRF-EGERDES 234 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236 >gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330] gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO] gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330] gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 3 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR ++ Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 234 >gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 233 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 223 Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V + G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 EVCREIR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++V +L++NL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWRIKTVWGVGYKFE 222 >gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 233 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 245 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+KA+ +E LK ++V G + ++D I+LDL L + G E Sbjct: 9 KILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR +I TP+ IL+ DK+ GL+ GADDY++KPF+ E++ARI+AI RR Sbjct: 69 ITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRITS 128 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + +V+L +V G R+ LT KE++++ R L Sbjct: 129 SSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRVL 188 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++E LN ++ + +++D+ + LR+KL + YI+T G GY +AK Sbjct: 189 SREKLLNGVWGYDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFNGDAK 245 >gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 250 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 R+L++ED++ + + + L+ E + V G +EL + FD ++LDL L Sbjct: 20 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR S P+ ILS S D+V GL+ GADDY++KPF+ E+VAR RA Sbjct: 80 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139 Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R + D+++N V V+G + L+ KE++++EL ++ Sbjct: 140 LLRRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 249 >gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E++ V GE+ I+L K F IILDL L + G E Sbjct: 6 KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 VCSKIR-ESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V G + LT E++++ L T+E + Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + E D IILDL L + G E Sbjct: 3 KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + GDL+++ DA V +G +I LT +E++++ L+ +T+E Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR ++ Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE 234 >gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 226 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ L+ E F V V G D +E+ D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ S DKV GL+ GADDY++KPF+ EL+AR+RA++RR Sbjct: 63 VCRELRARSNV-PVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGD 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++++ V V G + L KE++++E+L LT+ ++ + Sbjct: 122 AEEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV I +LR K+ YI TV G GY Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGYKFEP 226 >gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] Length = 236 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L++ + V V GE+ ++ K + + I+LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQI 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 IV ++ + + V + LT KE++++ L R+ +T+E Sbjct: 124 ANEVVKDDVDDEDIVIDNIRIRPEFFEVYRDDTLLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F V G + +E + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREVRKQFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDLS++ +A V+ +G I LT +E+++I L+ +T+E L Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYLRHPEQENA 236 >gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 249 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 R+L++ED++ + + + L+ E + V G +EL + FD ++LDL L Sbjct: 19 RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR S P+ ILS S D+V GL+ GADDY++KPF+ E+VAR RA Sbjct: 79 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138 Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R + D+S+N V V+G + L+ KE++++EL ++ Sbjct: 139 LLRRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 198 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 199 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 248 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 130/231 (56%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G+ G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR Sbjct: 63 VTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +++I+ GDL + ++ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR KL YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKME 233 >gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] Length = 236 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L++ + V V GE+ ++ + + + I+LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +++R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I+ + + + V + LT KE++++ L R+ +T+E Sbjct: 124 VNEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 230 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + L E + V + G + L + D I+LDL L + G + Sbjct: 4 KILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLMLPGMDGLD 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + +L+ + DK+ GL+ GADDY+ KPF+ EL+ARI+A++RRS Sbjct: 64 VCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRRS 123 Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A +V G+L +N + ++ LT KE+++++L T+E L+ Sbjct: 124 KRDAPLAGELVVGNLKLNFSRYEAHIGKVKLELTPKEFELLKLFVTDMGKVFTREQLLDK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I LR KLS IETV G GY RE Sbjct: 184 VWGYEYYGDTRTVDVHIRHLRAKLSIDPVLAEAIETVRGVGYRFRE 229 >gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 223 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 DVCRELR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222 >gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 233 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I L+ E F+ ++ G +E+ + D IILDL L + G Sbjct: 1 MNILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R +L+ D++ GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKE 172 +G T +V++D + Q H + LT E+ ++ ++ Sbjct: 121 SLRQGGQTQTHQTPHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ + +++D + +LRKK+ +I+TV G GY +N Sbjct: 181 QLIDKLWGDDFFGDERVVDTHVARLRKKIEPDPSHPTFIKTVTGVGYKFEDN 232 >gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 236 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L++ + V V GE+ ++ + + + I+LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +++R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I+ + + + V + LT KE++++ L R+ +T+E Sbjct: 124 VSEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 234 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 3 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A Sbjct: 63 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 116 -VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A + + GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR ++ Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 234 >gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +E L+ + + V G + ++ + D ++LDL + ++ GFE Sbjct: 6 KILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPEMDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R +TPV IL+ +EDK G G DDY++KPF+ EL R++A++RR Sbjct: 66 VCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRVSG 125 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L +N + V + G ++LT KE+ ++ +L+ +++ L Sbjct: 126 EELAPRLKEGTFDDGRLYINSKTREVRLNGEDVYLTAKEFDLLWVLANNPGVVYSRDQLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + V I ++R+K+ Y+ TVWG GY Sbjct: 186 DMVWGNEYFGDAGTVTVLIRRIREKIEKDPANPTYLRTVWGIGYKFE 232 >gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ L+ + V G++ EL ++D I+LD+ L ++ GFE Sbjct: 4 KVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR++G Sbjct: 64 VCQMIR-EKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKG 122 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q G++ ++LD++ V + ++LT KE+ ++ELL N +E LN Sbjct: 123 RKQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V+ +DV + +LR+K+ + YI T WG GY ++ Sbjct: 183 LVWGYDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGYFFQK 229 >gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S] Length = 237 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237 >gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ L + L L+ E F V G + + + +FD I+LDL L + G Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R A ++ P+ +L+ + DK+ GL+ GADDYI+KPFN EL+ARIRA++RR Sbjct: 63 ICREVRAAGMT-PIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SR +V GDL ++ + EV G + LT +EY ++ELL+ T++ L+ Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV + ++R+KL Y+ T WG GY L Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E ++V+ G + +E+ + + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236 >gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 252 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---------FDAIILDL 52 RIL++ED+ + I L L+ E + + + G + L + + FD ++LDL Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L + G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR Sbjct: 80 MLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139 Query: 113 RAIVRRSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RA++RR S V V I L+ KEY+++EL Sbjct: 140 RALIRRQNLTNSSSSSVKQFRDITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRVW 199 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 SRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 251 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 123/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ EN+ V + GE + L ++D I+LD+ + + G E Sbjct: 6 KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR +TPV +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCQELR-KTKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V V G I LT KEY+++ L+ + ++E Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226 L +++ +++ +D I +LR+KL+ + I TVWG GY + Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGYKFEAQKE 238 >gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803] gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803] Length = 233 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032] gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032] gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235 >gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ L E ++V GE+G+EL +D +ILD+ + I G+ Sbjct: 3 KILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R P+ +L+ + D++ G + D+Y+ KPFN + LVA+++A+ R + Sbjct: 63 VCRKIREESQV-PIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL ++ + V++ + LT KEY ++ K L++E LN ++ Sbjct: 122 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D I +LRKK+ + +I+TV G GY + Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGDN-----FIQTVRGFGYKFEGD 220 >gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 236 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 5 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR+RA +RR Sbjct: 65 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHTQ 123 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I+ G L + DA V +G I LT +E++++ L+ +T+E Sbjct: 124 IVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR ++ Sbjct: 184 LQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 236 >gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E F+V G + ++ K + + +ILDL L I G E Sbjct: 4 KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRIR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+ A TV+ +G ++LT E+++++ L N T+E + Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKFGD 228 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 133/232 (57%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L++E++ V G++ ++ + FD IILDL L + G + Sbjct: 3 KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R KI TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARI+AI RRS+ Sbjct: 63 VTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + I G ++++ + GHR+ LT KE++++ + R TL+++ Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++ E +++D+ + LR K+ +Y++TV G GY + + Sbjct: 183 LNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE 234 >gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 135/226 (59%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED K+LA++I L+ ++V + G++G+ + +D IILD+ L I G Sbjct: 1 MRILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + TPV L+ SIED+V GL +GADDY+ KPF+ +EL+AR+RA++RR Sbjct: 61 TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL ++ +++ V G I LT KEY ++E L+ K LT+ H+++ Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E I+DV+I LR+K+ + + I T+ G GY+LR+ + Sbjct: 181 YDFEGTSNIVDVYIRYLRRKI-DDGFPEKLIHTIRGVGYMLRDEKR 225 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L+ E + V V GE+ ++ + D I+LDL L I G E Sbjct: 14 KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 74 VAKQVRAKRST-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 132 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL+++ DA TV +G I+LT +E++++ L+ + +E Sbjct: 133 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY L +D Sbjct: 193 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 245 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L+ E + V V GE+ ++ + D I+LDL L I G E Sbjct: 4 KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKQVRAKRST-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL+++ DA TV +G I+LT +E++++ L+ + +E Sbjct: 123 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY L +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 235 >gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum LMG 18811] Length = 235 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V G++ + + + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIRSKSET-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 AQ + + GDL+++ A V G I LT +E++++ L+ + +T+E Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR +A+ Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235 >gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 232 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 131/228 (57%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDDK + +S+ L+L E + V V G + + K + D ++LD+ L + G+E Sbjct: 3 KILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DKV GL+ GADDYI+KPF +EL+ARI A++RR + Sbjct: 63 VCKEIR-KISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 IV ++L +TV+V+G ++L+ +E+++++LL T++M + H++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +DV+I LR+K+ + YI TV GY +E ++ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNEN 229 >gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 224 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 132/224 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + LK + + V V + GE G +L + + +D I+LD+ L + G Sbjct: 1 MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + + PV +L+ + EDKV GL GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ LS+N + V +HLT KEY ++EL + L++ M L+HL+ Sbjct: 121 TSSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +LRKKL N ++IETV+G GY L+++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224 >gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 225 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ +D+ L + L++E + V + GE+ + + FD ++LD+ L + GFE Sbjct: 5 HILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 RA+R A P+ LS DK+RGL G DDY++KPF+ E+VAR++A++RR Sbjct: 65 ACRAIR-AFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRR-YR 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L+++ V G + +T KE +++ L+ ++E + ++ Sbjct: 123 PSAEQWRFGPLTIDPKGYRVWRDGREVAMTAKELELLIFLARHPGQVFSREQLYDRVWG- 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + + V I ++R+K+ +I+TV G GY Sbjct: 182 -DFGDPRTVTVHINRIREKIEADPSRPQFIQTVRGLGYRF 220 >gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] Length = 236 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L++ + V V GE+ +E + + ++LD+ L G E Sbjct: 4 KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS+ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I+ ++ + + V + LT KE++++ L R+ +T+E Sbjct: 124 ASEIEKADVDDEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN +++ + +I+DV I LR KL I+TV G GY L Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + ++ L+ E F+V G + + K + D +ILDL L I G E Sbjct: 4 KIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRIR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+ A TV+ +G ++LT E+++++ L N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228 >gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V + G DGI + K + +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 EVCRELR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222 >gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 238 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + +I L+ + G + L + D ++LD L + G + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R + PV +L+ + + +VR L GADDY+ KPF+ +ELVAR++A++RR+ Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 AQSLIVTGDLS-VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + V+ + + V++ G I L +E+ ++ L+ +++ L ++ Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV + KLR+KL Y+ TVWG GY Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 240 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA+++ L+ E + + GE+G+ + +D IILDL L + G Sbjct: 15 MRILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGM 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR +I TPV +L+ ++ DKVRGL +GADDY++KPF EL+AR+RA++RR Sbjct: 75 EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ GDL ++ ++ V I+LT KEY ++E L N LT+ H++D Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 I+DV+I LR+K+ + + T+ G GY LRE K Sbjct: 195 YDFSGMSNIVDVYIRYLRRKIDDNF-EPKLLYTIRGSGYCLREPGK 239 >gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008] gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family [Veillonella parvula DSM 2008] Length = 224 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV L +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTD-ENVKLIQTVRGVGYVLK 221 >gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 238 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE ++L ++ I+LD+ L I G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLPGIDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR +TPV +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RR+ Sbjct: 67 VCNRLR-QVKATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRASA 125 Query: 122 HAQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A +G L + DA V G + LT KEY+++ L++ + ++E Sbjct: 126 TAYLTKESGTSNNIVFPHLVIEHDAHRVTANGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLE 235 >gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] Length = 236 Score = 197 bits (502), Expect = 7e-49, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + V+ G++ +++ + + D ++LD+ L + G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQE 236 >gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ L + L+ + + + GE+ ++ FD IILDL L I G E Sbjct: 4 KLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R TP+ +L+ K+ GL+ GADDY++KPFN EL ARI+A++RR++ Sbjct: 64 VCQTIR-QTSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I D +N + V + G ++LT KE+ ++ LL+ ++E L Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV + +LR+K+ + + YI T WG GY R Sbjct: 183 IWGYEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYFR 227 >gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 231 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + ++ L+ E F+V G + + K + D +ILDL L I G E Sbjct: 4 KIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRIR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+ A TV+ +G ++LT E+++++ L N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228 >gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 252 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---------EFDAIILDL 52 RIL++ED+ + I L L+ E +++ + G + L + EFD +ILDL Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L + G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR Sbjct: 80 MLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139 Query: 113 RAIVRRSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RA++RR S V V I L+ KEY+++EL Sbjct: 140 RALIRRQNLTNSSSSSVKQFRDIILYTQECRVTVGEQEIALSPKEYRLLELFMSYPRRVW 199 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 SREQLIEQIWGPDFLGDTKTVDVHIRWLREKLEQDPSQPEYLITVRGFGYRF 251 >gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 230 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ ED++ + + L L E++NVY G + +++ + D ILD+ + + GF Sbjct: 1 MNILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIMMPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K + PV ++ E+K+ GL GADDYI KPF+ E+VAR++A+ RR Sbjct: 61 KVLKKIR-EKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVG 119 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++Q+ I G+LS+N D+ T G+ I L KEY+++E L K TK+ Sbjct: 120 TYSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKIMEFLMENKGRVHTKKQI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I V I +R K+ + Y++T+ G GY L + Sbjct: 180 YEKVWGYEYYGDANTIMVHISHIRDKIEDNPKEPIYLKTIRGIGYKLEK 228 >gi|255530281|ref|YP_003090653.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343265|gb|ACU02591.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 233 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ L + LK+E + V GE + + D ++LD L G E Sbjct: 10 KILIVEDDENLRFLVVHRLKAEGYEVSEVGDGEAAERMILAEKPDIVLLDWMLPGKQGAE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V +R + +++ + DK+ G DY++KPFN + LVA + + V+ Sbjct: 70 VCEEVRKQGFDNLIIMMTAKAQDVDKIDAYNFGVSDYVTKPFNMDVLVAMLDSKVKFILN 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G++ + + T+ G +I LT E +++ N + ++ + ++ Sbjct: 130 NDRSEVHRFGNMEHHPNIHTLFRDGKKIELTILENRILLYFLRNPNKVINRDELMLVVWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D+ I +LRKK+ ++TV G GY + Sbjct: 190 YNSDVNTRTLDMHIVRLRKKIELNPDNPQLLQTVRGVGYRFNPS 233 >gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 236 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I L+ E + V G+ +E + D I+LD+ L + G E Sbjct: 5 KILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGVDGLE 64 Query: 62 VLR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R P+ +L+ DKV GL+ GADDY++KPF+ ELVARI+A +RR+ Sbjct: 65 VCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRRN 124 Query: 120 RGHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 QS G L ++++ +V + G ++ T KE+++++LL+ T+E Sbjct: 125 FKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + +DV I +RKK+ G ++ETV G GY RE Sbjct: 185 YLLEKIWGYDFAGDTRTVDVHIRHIRKKIEPEQGE-KFVETVRGVGYKFRE 234 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D++ + ++L L+ E F V G+ +++ E++ IILDL L I G+ Sbjct: 4 IRILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVIDGW 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V + +R K P+ +L+ DKV G + GADDY+ KPF+ ELVAR++A + R Sbjct: 64 TVCKEVR-KKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLG 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L + +++TV G + LT KE+ ++ L+ K T+E L ++ Sbjct: 123 PKGPEQTLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +D I +LR+KL + +YI TVWG GY Sbjct: 183 GYDFFGSLRTVDTHIKQLREKLGR-SKAASYITTVWGVGYKFE 224 >gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 250 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-------KFYEFDAIILDLGL 54 RIL++ED+ + + L L+ E ++V G + L + +F +ILDL L Sbjct: 20 RILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G ++ R +R S P+ ILS +S D+V GL+ GADDY++KPF+ EL+AR RA Sbjct: 80 PQVNGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRA 139 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R ++ T D+++ + V V+G ++L+ KE++++EL ++ Sbjct: 140 LLRRHRYNSIPQTPTLQLRDITLYPEECRVTVRGEEVNLSPKEFRLLELFMGYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 249 >gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ LK E ++ GE+ + L D I+LD+ L + GF Sbjct: 4 KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ISTP+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLR-QSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMIP 122 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ GDL+++ D V+ I LT +E+++++ L+ ++ T ++E L Sbjct: 123 GEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V+ +DV + ++R+KL YI T G GY + Sbjct: 183 KVWGYEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGYYFNK 229 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE+ +E + + D IILDL L + G E Sbjct: 4 KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVRAKHTT-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREAT 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GD++++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 123 AQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229 >gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118] gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 236 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++VY GE+ ++ K E D I+LDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S I GDL+++ +A TV G RI LT +E++++ L+ +T+E Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR + Sbjct: 182 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLRNPEVE 236 >gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 235 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ + + V G + IE+ +E D I+LD+ L G E Sbjct: 5 KILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR++ Sbjct: 65 VCREVRKKFDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I G L + DA V +G I LT +E++++ L+ +T+E L Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ +V+ +DV + +LR+K+ + +I T G GY LR NA E Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYLR-NADQE 234 >gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E F+V G + ++ K + + +ILDL L I G E Sbjct: 4 KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRIR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+ A TV+ +G ++LT E+++++ L N T+E + Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIHNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKFGD 228 >gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 233 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEKEM-PIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 224 Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 131/224 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + LK + + V V + GE G +L + + +D I+LD+ L + G Sbjct: 1 MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + + PV +L+ + EDKV GL GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ LS+N + V +HLT KEY ++EL + L++ M L+HL+ Sbjct: 121 TSLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +LRKKL N ++IETV+G GY L+++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224 >gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 656 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 130/232 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L S+++ V + G++GI L + ++D I+LD L + G Sbjct: 1 MRILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR A+ TP+ +L+ + +KV L +GADDY+ KP + EL+ARIRA++RRS Sbjct: 61 DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ V +HLT KEY ++EL + ++ L++L+ Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + P + I LR+KL A + IETV+G GY LR+ ++ + + Sbjct: 181 FEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRLRQPPEEGSAQT 232 Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + +L+ F + + + + E + D +ILD+ + + G + Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGID 583 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + + +R PV LS E + +GADDY+ KP EL+AR+ Sbjct: 584 LCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLN 638 Score = 57.7 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD LA + L + V V + D ++LDL D G Sbjct: 399 RLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAGN 457 >gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 1988] gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561] gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161] gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J2-003] gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e] gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 237 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237 >gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 235 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V G++G EL + D I+LDL L + G E Sbjct: 3 KILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 63 VTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTES 122 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + GDL + ++ + LT KE++++ L+ K +++ Sbjct: 123 RKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSRD 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR+K+ YI+T+ G GY + Sbjct: 183 QLLDAVWNYDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKME 232 >gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51] gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+K +++ ++ L+ E F V G + L K +D ++LDL L + G Sbjct: 1 MRILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +L+ +ED++ G GADDYISKPF+ E+VAR++A++RR+ Sbjct: 61 EICKEIR-KISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTD 119 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++ V I LT E++++ L+ ++ + Sbjct: 120 IETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRGQLVE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ID I KLR+KL I TV+G GY + ++ Sbjct: 180 IVQGHDFGGDDRVIDAHIKKLRQKLEKVPSDPKIILTVYGVGYKFNPHQEE 230 >gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I ++EDD+ LA ++ L E F+V G G+ L + + D II D+ + + GFE Sbjct: 3 KIAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREKPDIIISDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R L + + PV +L+ S DKV GL+ GADDY+SKPF+ ELVAR++A++RR Sbjct: 63 LTRTL-RTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRRLEM 121 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L ++ + + V G + L+ +E+ ++ L + +++ Sbjct: 122 TAGTEAGIPAGLTLRLGGLELDAERHRLTVGGQEVELSPREFDLLAYLMNNRGRVFSRQS 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ + + +DV + LR+K+ +++ TV G GY E Sbjct: 182 LVDRVWGYDYPGDERTVDVHVRWLRQKIETDPARPHHLVTVRGVGYKFEE 231 >gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 229 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + I + L +E + V GE+ + + +D IILD+ + + G Sbjct: 5 RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGIA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R P+ +L+ + D++ GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 65 VCQEIR-RVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGT 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ + ++L ++ ++V+ + LT KE++++ LL+ + ++E L + Sbjct: 124 ESKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +V+ +D + +LR KL AAG N+I+TVWG GY A Sbjct: 184 WGFDYYGDVRTVDTHVNRLRDKL-RAAGAPNFIKTVWGVGYKFEVEA 229 >gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 231 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K + + L+ E F V + G+ +E+ D ++LD+ L + G Sbjct: 3 RILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDGLT 62 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR PV ILS D+V GL+ GADDYI+KPF+ ELVAR++A +RR Sbjct: 63 VCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLRRH 122 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL V+ + VE G R LT E++++ +L+ ++E+ L Sbjct: 123 VPVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELLLQK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I +R+KL G YIETV G GY RE Sbjct: 183 VWGYDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRFRE 228 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + Sbjct: 65 VCRRIR-KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + IDV + +LR+KL A K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229 >gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 225 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59 M+IL+ +D+ + + LK E F V G++ +++ D IILD+ + ++ G Sbjct: 4 MKILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPELDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + V R +R PV +L+ S D++ G GAD+YI+KPF+ LVAR++A++RRS Sbjct: 64 WSVCRQIR-KSSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + L +N + V + G ++ L+ KE++++ L+ K L+++ LN ++ Sbjct: 123 GNAEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +D I KLR KL + ++I+TV G GY Sbjct: 183 DYDYFGDARTVDTHIKKLRLKLGDKG---DFIQTVRGLGYKFE 222 >gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM B1551] gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM B1551] Length = 235 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V+ G + +E + + + I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 VAAPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRSPEQE 235 >gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] Length = 230 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G++ FD +ILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] Length = 230 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ L+ + V GE+ + L K ++D I+LD+ L + G+E Sbjct: 3 KVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIR-EFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVS 121 Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 HA + ++ D++ V + G ++LT KE+ ++ELL N ++E LN Sbjct: 122 HAAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ G +Y+ T WG GY + Sbjct: 182 TVWGYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 227 >gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 224 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDD + ++L L+ E F V D G ++L + D ILD+ + + GFE+ Sbjct: 5 ILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLNGFEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RALR P+ ILS S DK+ GL GADDYI+KPFN E+VAR++A +RR+ Sbjct: 65 TRALR-KFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRASRS 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ +L+++ + G +I LT EY+++ LL TK Sbjct: 124 GSDILTVRELTLDTTTFQLTKNGKQILLTPMEYKILALLMRSPGRIYTKIQLYEGAIGNY 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + + V I KLR K+ + YI TV G GY L + Sbjct: 184 FEGDDNTMMVHISKLRDKIEDDPKSPRYIITVRGLGYKLEK 224 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L L+ E F V + GE+ ++ K IILDL L + G++V Sbjct: 6 ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ DKV GL+ GADDY++KPF+ ELVAR++AI+RR+ Sbjct: 66 CREVR-KFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRATPE 124 Query: 123 AQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ L++N ++ V V + LT KE+ ++ L+ T+E L + Sbjct: 125 EQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLTAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++ +D I +LR+K+ +++T+WG GY K Sbjct: 185 WGYDYYGDLRTVDTHIKRLREKVERDGNTP-HVKTIWGVGYKFEVQEK 231 >gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED+K + I++ + +++ GEDGI + D +ILD+ L I G Sbjct: 1 MKQILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIILPGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F V + LR + +L+ + D++ GL+ GADDY+ KPFN EL+ R AI++R Sbjct: 61 FNVCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRL 120 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G++Q+ G + A+ V G I LT KEY ++E L N ++K+ L Sbjct: 121 HGNSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + K +DV + +LRKK+ + YIETVWG GY +E Sbjct: 181 DIVWGYEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYRWKE 228 >gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601] gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601] Length = 237 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ ++L + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + G L+++ DA V +G I LT +E++++ L+ +T+E Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237 >gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 229 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D + ++ L F V G + + + + D I+LD+ + + GF+ Sbjct: 6 ILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLDGFQF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ R + PV +L+ + DKV GL+ GADDY++KPF ELVAR+RA++RRS Sbjct: 66 MQTFRKRHNT-PVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSPD 124 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + GDL++N + V V + LT E+ ++ L ++E L L Sbjct: 125 ALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERLQ 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + IDV I LRKKL Y+ETV+G GY Sbjct: 185 GNDYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGYR 225 >gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319] gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319] Length = 235 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V+ G + +E + + + I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 VAVPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRSPEQE 235 >gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 250 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54 RIL++ED+ + + L L+ E + + G +EL + FD ++LDL L Sbjct: 20 RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G ++ R LR + P+ ILS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR + D+S+ V V+G I+L+ KE++++EL ++ Sbjct: 140 LLRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249 >gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 247 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 132/241 (54%), Gaps = 20/241 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ +E L E + V + G+ +L FD IILDL L + G + Sbjct: 3 KVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++TP+ +L+ +K+ GL+ GADDY++KPF+ E+VAR++AI+RRSR Sbjct: 63 VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122 Query: 122 H--------------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 + +S+I GD+++N +V G + +T KE++++ L Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182 Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + +++E+ L+ ++D +++DV I LR+K+ YI TV G GY Sbjct: 183 AERVDRIVSREILLSKIWDFDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGYKF 242 Query: 222 R 222 Sbjct: 243 E 243 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A ++ L E F V G++ ++ D I+LDL L G E Sbjct: 42 KILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTDGIE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+ARI+A +RR R Sbjct: 102 ICRKVR-EKYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H +S GD + + V + LT +E++++ ++ N LT+E L Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV I +LR+K+ YI T G GY +R+ D Sbjct: 221 QSVWGYDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGYTMRDPGTD 272 >gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 233 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I L++E F+ ++ G +E+ + D IILDL L + G Sbjct: 1 MNILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R +L+ D++ GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKE 172 +G T +V++D + Q H + LT E+ ++ ++ Sbjct: 121 SLRQGGQTQTYQTAHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ + +++D + +LRKK+ +I+TV G GY +N Sbjct: 181 QLIDKLWGDDFFGDERVVDTHVARLRKKVEPDPSHPTFIKTVTGVGYKFEDN 232 >gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] Length = 228 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD ++ ++ L++EN+ V GE+ E + + ++LDL + I G Sbjct: 1 MKLLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMIPKISGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R + P+ I+S + DK GL GADDYI+KPF+ E++ARI+A +RRS Sbjct: 61 EVMQHIRT-HSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRST 119 Query: 121 GHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ + GDL++NL TVE G +I LT KE+++++LL TKE + Sbjct: 120 QYSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + ++V I +LR K+ YI TVWG GY L + Sbjct: 180 LIWNDAYLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKLGD 226 >gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11] gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp. D11] gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp. D11] Length = 224 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + +D IILD+ L + G+ Sbjct: 1 MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K TPV +L+ +IEDK++GL GADDY+ KPF+ EL+ARIRAIVRR Sbjct: 61 EVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKEDE 224 >gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 235 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 13/232 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ + + LK + V + G ++ E D ++LD+ L ++ G Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRA--PEADLVLLDIMLPEVDGL 58 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R L+ + P+ +L+ + D+V GL+ GADDY+ KPF+ EL+AR++A++RR Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + + G L ++ + + I LT KEY++++LL Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ L ++ + + +DV I LR KL + + IETV G GY Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 233 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ LA ++ L E + V G + +EL + + +ILD+ + + G E Sbjct: 5 KILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DK+ GL GADDYI KPF+ E+VAR++A +RR + Sbjct: 65 VCRRIRAESNV-PIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L +++ + G + LT KE++++ L+L N LT+E Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + ++ + V I KLR+K+ + +I+TVWG GY AK Sbjct: 184 NVWGFNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKFSGGAK 233 >gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 233 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ + + + D I+LDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVRAKHNI-PIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + I G L +N D+ +V G ++ LT +E++++ L+ +T+E L Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ G + T G GY LR D Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYLRNPEND 233 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L++E++ V G++ ++ + FD IILDL L + G + Sbjct: 3 KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R KI TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARI+AI RRS+ Sbjct: 63 VTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122 Query: 122 HAQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ G ++++ + G R+ LT KE++++ + R TL+++ Sbjct: 123 QPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRDA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++ E +++D+ + LR K+ +Y++TV G GY + + Sbjct: 183 LLNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE 235 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + L L+ E V GE + L + D ++LDL L + G EV Sbjct: 4 ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R L + TPV +L+ S D++ GL GADDY+ KPF+ ELVAR+ A++RR + Sbjct: 64 CRRL-QSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQPQ 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L V+ + V+V G I LT +E+ ++ L+ + T++ + Sbjct: 123 PDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLME 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I +LR+K+ + Y++TVWG GY L Sbjct: 183 LVWGYTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227 >gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V+ GE+G++L FD ++LD L G Sbjct: 1 MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K TP+ +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ + K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEEE 224 >gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium variabile DSM 44702] Length = 224 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L+ E F+ G + +E + D I+LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLMLPGMNGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VCRAVR-DFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKELVARVRARLRRIPE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 GD++++ V G I LT E++++ L+ R ++E L ++ Sbjct: 123 ETPDTATVGDVTIDFGGHQVTRDGAVIQLTPIEFELLGTLASRPRQVFSREELLERVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ I+TV G GY Sbjct: 183 RKNSDTRLVNVHIQRLRSKVEKDPDNPVIIQTVRGVGYK 221 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR Sbjct: 65 VCRRIR-KLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTV 123 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + IDV + +LR+KL A K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229 >gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 224 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD A+A ++ L +E + V G G++ FD ++LD+ + G+ Sbjct: 1 MRVLLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIMMPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A++ TPV +L+ D+ GADDY++KP++ LVAR+RA+ RR Sbjct: 61 EVVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G LS++ A V+ + LT +E+ ++E L K +TK ++ ++D Sbjct: 121 PERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++V+I LRK++ +A G I+TV G GY L ++ Sbjct: 181 VNYTGDENVVEVYISYLRKRI-DAPFGCKSIQTVRGVGYRLDDDG 224 >gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A ++ L+ E + + + GED ++ + D ++LD+ L + GF+ Sbjct: 4 KILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ DKV GL+ GADDYI+KPF EL+AR+ A RR Sbjct: 64 VCRKIR-ESFSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A S I +G LS++ V+ I LT +E+++++ L+++ T+E L Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV + +LR+K+ + +G YI+T G GY R Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYFR 227 >gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 231 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ L I+ L F V G + + D IILDL L + GFEV Sbjct: 6 ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPALDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + + + D+V+GL+ GADDY+ KPF+ ELVAR+RA+ RR R Sbjct: 66 CRQLRTFSDAYILML-TAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRPRQS 124 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L+++ ++ TV + G I+LT EY+++ +L+ ++ L+ + Sbjct: 125 GYIDEPSTMTVGPLTIDSESHTVRLDGVPINLTPLEYRLLTILAAAPGRVFSRAQLLDQV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I LRKKL + +I TV GY E Sbjct: 185 WGNNYFGDEHVLEVHIANLRKKLGDDPARPRFIFTVRSVGYRFGE 229 >gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 241 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK NF V G D + + + +FD ++LDL L + G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSGEQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ LR+ + TPV +L+ + DKV GL+ GADDYI KPF+ E++ARI A++RR Sbjct: 63 VLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A+++ TG +++ V + LT KE++++E L +N L+ Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ L ++ + +++D+ I LR+K+ Y+ TV G GY D Sbjct: 183 RDQLLQGVWGFDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGYEFSTGDDD 239 >gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12] gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12] gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 244 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 13 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 73 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 132 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR ++ Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 244 >gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 232 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ ++ + L E F V GE+ +++ +F+ I+LDL L I G E Sbjct: 4 KILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKIDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R + PV I+S DK GL GADDYISKPF+ E++ARI+A +RR R Sbjct: 64 CLRMIRSKSMV-PVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + +I GDLSV+L +V+ +I+LT KE+ +++L + TK Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I+V I +LR+K+ + YI+T+WG GY L + Sbjct: 183 YKSVWEDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKLGD 231 >gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + ++ L+ E F+V G + ++ K + D +ILDL L I G E Sbjct: 4 KIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ G GADDY++KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRIR-QFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTND 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+ A TV+ +G ++LT E+++++ L N T+E + Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKFGD 228 >gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 224 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + +D IILD+ L + G+ Sbjct: 1 MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K TPV +L+ +IEDK++GL GADDY+ KPF+ EL+ARIRAIVRR Sbjct: 61 EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKEDE 224 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE +E + D IILDL L I G E Sbjct: 4 KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVRAKHTM-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL+++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ L E ++V GE+G++L +D +ILD+ + I G+ Sbjct: 3 KILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIMMPKIDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R P+ +L+ + D++ G + D+Y+ KPFN + LVA+++A+ R + Sbjct: 63 VCRKIREESQV-PIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL ++ + V++ + LT KEY ++ K L++E LN ++ Sbjct: 122 IVDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D I +LRKK+ + +I+TV G GY + Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGDN-----FIQTVRGFGYKFEGD 220 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + Sbjct: 65 VCRRIR-KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + IDV + +LR+KL A K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ +D++A+ S+ L + V + + G +EL + + +ILD+ + + G Sbjct: 1 MKILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++ RRS Sbjct: 61 EVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRSI 120 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q+ +L N D + V G I LT E+ ++E L L++ L Sbjct: 121 TESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSDIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V+I LRKK G I TV G GYVLRE A Sbjct: 181 EEVWGYNFPTSGNALEVYIGYLRKKTEAN-GESRLIHTVRGVGYVLRETAP 230 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD A+ S+ L +++ + GE+ + + D +ILD+ + + G Sbjct: 1 MKILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR TP+ +L+ S+ ++V GL +GADDY++KPF EEL+AR R++VRR Sbjct: 61 EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ DL ++ + V G +I LT E+ ++ELL L++ Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K G I+TV G GYVLRE A Sbjct: 181 LEDVWGYDFPTSGNALEVYIGYLRRKTEAD-GEPRLIQTVRGVGYVLRETAP 231 >gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+++L + L+ + G + + + IILD+ L D GF + Sbjct: 34 VLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDGFTL 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR I TP+ +L+ S DKV GL+ GADDY++KPF+ ELVARI+A++RR+ G Sbjct: 94 CRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEGR 153 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q + G + ++ V G R+ LT E++++ L+ T++ L+ ++ Sbjct: 154 RQQI---GPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWGEE 210 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +DV + LR+KL +I TV G GY L Sbjct: 211 AFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLNSPV 253 >gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15] Length = 244 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 13 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A Sbjct: 73 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131 Query: 116 -VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A + + GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 132 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR ++ Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 244 >gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI] gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 357 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + L++E F V G + + L ++D +ILDL + + G+ Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ + D++ GL+ GADDY+ KPF+ ELVAR++A++RRS+ Sbjct: 188 VCREVR-KTTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + LS+N +++ V V ++LT KEY M+ L++ + T T+E Sbjct: 247 APPAAQDGKPVVLNYPGLSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREEL 306 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + + +D + +LR KL A+G ++YI TVWG GY + Sbjct: 307 IESVWGYDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGYKFEVD 356 >gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + ++ L+ E F+V G + ++ K + D +ILDL L I G E Sbjct: 4 KIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR + P+ +L+ DK+ G GADDYI+KPF+ ELV R++AI+RR+ Sbjct: 64 LCKRLR-QFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL V+L A TV +G ++LT E++++++L N T+E + Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ID I LR+K+ + YI+TV+G GY + Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228 >gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 128/235 (54%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++VY GE+ ++ + D I+LDL L + G E Sbjct: 4 KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VARQVR-KSHDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQGS 122 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL+++ +A V +G +I LT +E++++ L+ +T+E Sbjct: 123 TSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPEQE 237 >gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 233 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E++ V GE+ I+L K F +ILDL L I G E Sbjct: 6 KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + + +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 VCSKIR-EFSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V G + LT E++++ L T+E + Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + Sbjct: 65 VCRRIR-KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + IDV + +LR+KL A K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229 >gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] Length = 239 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 13 HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 73 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 192 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 237 >gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21] gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V+ GE+G++L FD I+LD L G Sbjct: 1 MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K TP+ +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ + K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEEE 224 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 11/239 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D++ + ++ LK E + + + G ++L + +D I+LD+ L + Sbjct: 1 MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R TP+ ++S DKV L+ GADDY++KPF+ EL+AR++AI+RR Sbjct: 61 GIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRR 120 Query: 119 SRGHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + L + + V ++LT KE++++ L N TLT Sbjct: 121 TEKTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +E L ++ E +++DV I KLR+K+ + +I+T+ G GY +E KDET Sbjct: 181 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKFKE-LKDET 238 >gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 224 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K + I+ L+ E + V GE+G+++ +D IILD L G Sbjct: 1 MRILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K +TPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKEE 223 >gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905] gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905] Length = 230 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD+A+ + L E F V + GE+ ++ C FD +ILD+ + + G E Sbjct: 4 HILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ +R + + P+ I+S S DK GL GADDYI+KPF+ E AR++A++RR Sbjct: 64 VLKVIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H Q ++V GDL +++ ++ G + LT KE+ +++L +N TKE Sbjct: 123 YAGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + II+V I +LR+K+ + YI+T+WG GY Sbjct: 183 QLIWKDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGYKFE 229 >gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 225 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD AL + L+ F V GE +EL D IILDL L + GF Sbjct: 1 MRVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELF--PRADLIILDLMLPKLDGF 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + P+ +L+ E++V+GL+ GADDY+ KPF+ +E+VAR++A++RR+ Sbjct: 59 KVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAG 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L + + ++G + L+ E+ ++ L+ T+E L ++ Sbjct: 119 LKEELCY--GPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWG 176 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++DV I LRKKL + +IETV G GY RE Sbjct: 177 PDFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRFRE 219 >gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ + I L E + V T G IE + +F +ILD+ L I G+ Sbjct: 5 IKILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIMLPKIGGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R K +TPV ILS DK+ GL GADDY++KPF EL AR++A +RR Sbjct: 65 EVLQKIR-EKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRFL 123 Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + D+ ++++ V+V G+ + LT KE+++++L TK Sbjct: 124 KFSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTKNQM 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I +LR+K+ YI+T+WG GY L E Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKLVEE 233 >gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ L+ + V GE+ +E K ++D I+LD+ L + GFE Sbjct: 3 KVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R S P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIR-EFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAH 121 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H L ++ +++ V + G ++LT KE+ ++ELL N ++E L Sbjct: 122 HDVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ + + +DV I +LR+K+ G +Y+ T WG GY + Sbjct: 182 NTVWGYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 228 >gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] Length = 234 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I L+ +N V GE+ I L K E+D ++LD+ L G+E Sbjct: 3 RILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 63 VCQAIR-EFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G V + D++ V + I+LT KE+ ++ELL+ N ++E Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L +++ D +V+ +DV + +LR+K+ + Y+ T WG GY R + Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFRAQS 234 >gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ ++ L+ E F V G + I L +D IILD+ L GFE Sbjct: 9 RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + TPV +L+ + S++++V+GL +GADDY+ KPF +EL+AR+ A++RR R Sbjct: 69 VCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPRE 128 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DLS++ + TV+ I L+ KEY+++E L+ + L++ ++D Sbjct: 129 SFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWDQ 188 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV+I LRKK+ + I TV G GY L Sbjct: 189 DFFSDSNVVDVYIRYLRKKI-DDPFPTKLINTVRGFGYKL 227 >gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G++ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V VT G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++ Sbjct: 61 EVCRELR-KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H+ Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I ++R+K+ N I+TVWG GY Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIENN-KYPWKIKTVWGVGYKFE 222 >gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 252 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 112/232 (48%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---------EFDAIILDL 52 RIL++ED+ + I L L+ E + + G + L + EFD ++LDL Sbjct: 20 RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L + G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR Sbjct: 80 MLPQVNGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139 Query: 113 RAIVRRSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RA++RR + + S V + I+L+ KEY+++EL Sbjct: 140 RALIRRQKFTSSSSSSVKQFRDITLYTQECRVTLAEEEINLSPKEYRLLELFMSYPRRVW 199 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 SRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEQDPSQPQYLITVRGFGYRF 251 >gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 231 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +E LK E F V G + +EL D ++LDL L DI GFE Sbjct: 5 KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R ++ P+ +LS DK+ G + G DDY +KPF+ ELV RIRA++RRS+G Sbjct: 65 VCRRIKSRSDI-PIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKG 123 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ D+ +N + V V G ++LT KE+ ++ LL+ N ++ L Sbjct: 124 CKEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + V I +LR+K+ N +I+T+WG GY Sbjct: 184 IWDSSYYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGYKFEAE 230 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ +E + E D I+LDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVRAKHNI-PIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + I G L +N D+ +V G ++ LT +E++++ L+ + +T+E L Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + T G GY LR D Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYLRNPETD 233 >gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 239 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD ++ ++ L+ + ++V V G +G++ + ++ +ILDL L D+ G++ Sbjct: 3 RILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDVSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + ++ V +L+ + DK++G Q GADDY++KPF+ EL AR++AI+RR R Sbjct: 63 LCQQMQKETGVY-VLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRRGRT 121 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ L ++ + V I+LT E+ ++ ++ + + Sbjct: 122 RTETGSAPVLTFPSLVIDPTTREVIRDRRPINLTALEFDLLYAMARHPGRVWRRSELIQE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++D E + +++DV I ++RKKL I TV G GY E Sbjct: 182 VWDFNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFEPPTPKE 232 >gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + ++ L+ ++ V G + IE K ++D ++LD+ + G E Sbjct: 3 KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQMVR-EFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNR 121 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +N LD++ V V G ++LT KE+ ++ELL N ++ LN Sbjct: 122 KQAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ G YI T WG GY + Sbjct: 182 TIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 227 >gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 230 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 123 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] Length = 239 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 13 HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 73 VVRIIR-EKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 192 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 237 >gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125] gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125] Length = 238 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + +++ L+ E ++V G++ +E +++D I+LDL + ++ G E Sbjct: 6 KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCQKLRKQ-KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 LS++ DA V V I+LT KEY+++ L+ + ++E Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D I +LR+KL+ + I TVWG GY Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFE 234 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE+ +E + + D IILDL L I G E Sbjct: 10 KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKIDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 70 VAKRVRAKHTT-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL ++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235 >gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 233 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + L+ F V G++ + + IILDL L + G + Sbjct: 5 RILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGMDGRD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ ++V G + GADDY+ KPF+ ELV R++A+++R+ Sbjct: 65 VCAQIR-QHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L+ +DA+ VEV G + LT KE+ ++ ++ R + ++E L Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELLR 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 +++ + + + +D I +LR+KL A YI TVWG GY Sbjct: 184 DVWNYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFE 230 >gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] Length = 230 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273] gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + I G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-ESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGYKIEKD 232 >gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 127/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L E ++V G++ +++ D ++LD L ++ G E Sbjct: 3 KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIRSKSDV-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ I GDL ++ A V G I LT +E+Q++ L+ +T+E Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR + + Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPSEE 235 >gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 233 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E + V GE+ I+L K F +ILDL L + G E Sbjct: 6 KILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ E+K+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 VCSKIR-ESSNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V++ V +G + +T E++++ L T+E + Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKMVTITPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L ++ + F V G G+E+ + D IILD+ L + GF V Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA----IVRR 118 RA+ + + P+ +L+ + ++ GL+ GA DY+ KPF+ EL+AR+RA R+ Sbjct: 64 CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ G + ++ +++ V + I L+ KE+ ++ L L++++ L + Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + IDV + LR+KL I TV G GY ++ A D Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATD 231 >gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 235 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V+ GE+ ++ + D IILDL L I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTHDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S I G L+++ +A V G +I LT +E++++ L+ +T+E Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR + Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLRSPEAE 235 >gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 234 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + ++ L+ E F V G +L +D ++LDL L I G + Sbjct: 12 RLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLPGINGLD 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + ++S + D+V GL+ GADDY+ KPF ELVAR RA++RR R Sbjct: 72 LCRQLRQGSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLRRQRT 131 Query: 122 HAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L + L V G I L+ KEY+++EL ++E + ++ Sbjct: 132 PLPTTSSLEHLDLQLYPGECRVTRAGIEIRLSPKEYKLLELFMQNPRRVWSREQLIEQVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K +DV I LR+K+ + + TV G GY Sbjct: 192 GVDYIGDSKTVDVHIRWLREKIEDDPSTPAKLVTVRGFGYRF 233 >gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 126/238 (52%), Gaps = 15/238 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ E + V G +G E+ + +D IILDL L + G + Sbjct: 3 KVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI P+ +L+ +K+ GL+ GADDY++KPF+ E++AR++AI+RR Sbjct: 63 ICKKLRQEKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122 Query: 122 H---------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 LI GD+ ++ V V+G +I +T KE++++ + R N Sbjct: 123 KSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRIN 182 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L++E L+ +++ E +I+DV I LR+K+ YI TV G GY Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFEAP 240 >gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 239 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E + V + G + +L + D I+LDL L G + Sbjct: 4 KILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLMLPGKDGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRAKLET-PIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQK 122 Query: 122 HAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + + + D TV G + LT +E++++ L +T+E Sbjct: 123 AAAAAEGAEETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV I +LR+K+ YI T G GY++R Sbjct: 183 HLLQAVWGFEYFGDVRTVDVTIRRLREKIEKDPSKPEYILTRRGLGYMMR 232 >gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 235 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 127/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L E ++V G++ +++ D ++LD L ++ G E Sbjct: 3 KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIRSKSDV-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ I GDL ++ A V G I LT +E++++ L+ +T+E Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR + + Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPSEE 235 >gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 229 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L E +NV G++ I + + D I+LD+ L GF Sbjct: 4 KILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR KI++P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCKKLR-EKITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + +I GDL ++L + V +G + LT +EY++I+ LS + T+E L Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++ +DV + +LR+K+ + YI T G GY R+ Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYFRKQ 229 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 4 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 64 VARQIRKEHDT-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR +A+ Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPDAE 237 >gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ +I LK +V GE I D +ILD+ L I GF+ Sbjct: 3 RILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPTIDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R S P+ +L+ D+V GL+ GADDY++KPF+ EL+AR++A++RR Sbjct: 63 VCRHIR-RSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRREL 121 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + + G L ++ A V G + LT KE ++ L+ + Sbjct: 122 LEQELASNPDGREEVFEIGTLRIDPAAYRVTRNGREVQLTPKEMDLLVYLARHRGNVCPT 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + + + V I LR+KL IETV G GY L Sbjct: 182 RRILEAVWGYDYYGDNRTVAVHIHGLREKLEEDPRQPRLIETVRGVGYRL 231 >gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 239 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60 +L+++D+ ++ +E F+V D G E K ++D ++LDL L + G Sbjct: 4 VLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ D V GL+ GADDY++KPF+ ELVAR RA++RR+ Sbjct: 64 EVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRTE 123 Query: 121 GHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 T G++ +++ V V+G + T KE+++++ L+++ Sbjct: 124 SREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ + +I+DV + LR+K+ + + YI TV G GY E Sbjct: 184 QLLDRVWGYSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKFTE 234 >gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 234 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + LK+E + V + GE+G+EL K E I+LD+ + I G + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + GD+ +N+ V + + LT +E+ ++ELL+ + ++ E Sbjct: 125 NGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I K+R+K+ Y++TVWG GY + ++ Sbjct: 185 ERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233 >gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 235 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+ ++A ++ L+ F V G G++L + + I+LDL L ++ G E Sbjct: 4 KIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI+TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMNQ 123 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I+ GD+ + D R+ LT KE++++ L+ K LT++ L Sbjct: 124 QTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +++ + +I+DV I +R+K+ YI+T+ G GY + E + Sbjct: 184 SAIWNYDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKMEEPKAE 235 >gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 239 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60 +L+++D+ ++ +E F+V D G E K ++D ++LDL L + G Sbjct: 4 VLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ D V GL+ GADDY++KPF+ ELVAR RA++RR+ Sbjct: 64 EVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRTE 123 Query: 121 GHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + T G++ +++ V V+G + T KE+++++ L+++ Sbjct: 124 SREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ + +I+DV + LR+K+ + + YI TV G GY E Sbjct: 184 QLLDRVWGYSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKFTE 234 >gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W] gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI] gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W] gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDD + + L L+ + F V + G + L + + D ILD+ + + GFE+ Sbjct: 5 ILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMNGFEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RALR P+ ILS S DK+ GL GADDYI+KPFN E+VAR++A +RR+ + Sbjct: 65 TRALR-KYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRRAARN 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +I +LS++ A + G I LT EY+++ LL TK Sbjct: 124 SSDVITVRELSLDTAAFQLTKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIGNY 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + + V I KLR+K+ + YI TV G GY L + Sbjct: 184 FEGDDNTMMVHISKLREKIEDDPRNPRYIITVRGLGYKLEK 224 >gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 4 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +R Sbjct: 64 VARQIRKEHDT-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122 Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR +A+ Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPDAE 237 >gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016] gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 240 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + + G + +++ K I+LD+ L + G++ Sbjct: 14 KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 73 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + TP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 74 VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 133 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GD+S++ D V G ++ LT KE++++++L K +T++ L+ + Sbjct: 134 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +R+K+ + YIET+ G GY Sbjct: 194 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRF 236 >gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555] gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555] Length = 231 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + + G + +++ K I+LD+ L + G++ Sbjct: 5 KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + TP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++AI R Sbjct: 65 VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GD+S++ D V G ++ LT KE++++++L K +T++ L+ + Sbjct: 125 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +R+K+ + YIET+ G GY Sbjct: 185 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRF 227 >gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 255 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ AL + L+ + G + + + IILD+ L D GF + Sbjct: 33 VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDTDGFTL 92 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TP+ +L+ S DKV GL+ GADDY++KPF+ ELVARI+A++RR+ G Sbjct: 93 CRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEGR 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q + G + ++ V G R+ LT E++++ L+ +++ L+ ++ Sbjct: 153 RQQV---GPIVIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWGED 209 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +DV + LR+KL +I TV G GY L Sbjct: 210 AFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLNSPV 252 >gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK + Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYS 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ ++ L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] Length = 228 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + ++ L+ ++ V V G + E K +D ++LD+ + G E Sbjct: 3 KVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQMVR-EFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGK 121 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ + + +N LD++ V V G ++LT KE+ ++ELL N ++ L+ Sbjct: 122 KAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ + G YI T WG GY + Sbjct: 182 TIWGSTYPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYFK 227 >gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +++ IE LK + V GE E K + D I+LDL L + G + Sbjct: 5 KILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + P+ +L+ + + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + Sbjct: 65 VCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQA 124 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G L V + + V ++G I LT KE++++ L + L+++ L+ Sbjct: 125 LPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLHG 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +I+DV I LR K+ A YI TV GY L Sbjct: 185 VWDYHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228 >gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 234 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L + + V + G D +++ K I+LDL L + GF+ Sbjct: 5 KILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLMLPGLDGFD 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + ++ + + +L+ DK+ GL+ GADDYI+KPF+ EL+AR++A++RR+ Sbjct: 65 VCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + L ++ D V + +I LT KE+ ++++L K L +E L+ Sbjct: 125 YPGVDIEENSYESQGLKIDFDRHEVFINNQKIELTLKEFDLLKILIKNKGKILQRETLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +DV I LRKK+ +IET+ G GY Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFNP 231 >gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 232 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ E V GE+ IE+ + E+D ++LD+ L GFE Sbjct: 3 KVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIR-EFSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTR 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I G+L ++ D++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 RSRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREEL 181 Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L +++ + +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LGYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 231 >gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ E V GE+ IEL + E+D ++LD+ L G+E Sbjct: 3 KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V +A+R P+ +L+ DK+ GL+ GADDYISKPFN E+ ARI+AI+R Sbjct: 63 VCQAIR-EFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R +I GDL ++ +++ V + G I+LT KE+ ++ELL N ++E Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +++ R D +V+ +DV + +LR+K+ + ++ T WG GY Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGYYF 231 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E F V+ G + +E K E D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVR-KSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + GDL++ DA V+ +G I LT +E+++I L+ +T+E L Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ +V+ +DV + +LR+K+ + N+I T G GY L E Sbjct: 183 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYLSSPEDVE 234 >gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 127/232 (54%), Gaps = 9/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + I+ L+ E + V G ++L + + D IILD+ L + G V Sbjct: 4 VLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 R L+ + + P+ ++S DK+ GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 CRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRSE 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ +V G+L ++ D +E+ G + +LT KE+++I L+ + +++ Sbjct: 124 EVETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRDY 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ + + +DV I +R+KL + YIETV G GY +E++ Sbjct: 184 LLEQIWGYDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRFKESS 235 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE +E + D IILDL L I G E Sbjct: 10 KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 70 VAKRVRAKHTM-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL+++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235 >gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 236 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ AL + L L+ E F+V G + + + + D +ILDL + ++ G+E Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGGYEF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LRA + TPV +L+ DK+ GL+ GADDY++KPFN EL+ARIRA++RR++ Sbjct: 64 LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQA 122 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 D+ ++ +TV V G I LT E+ ++ L ++ L+ + Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I LR K+ + YIETV+G GY Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGYRF 223 >gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202] gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202] gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60] Length = 242 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L E + V G+ G+ L + +DA+ILDL L + G + Sbjct: 10 RILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 70 ICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 129 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++L+ G L+++ A+ V V I LT +E+ ++ + ++ L Sbjct: 130 MGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + ++ I +LR K+ I TVWG GY + Sbjct: 190 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYKFAD 237 >gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 241 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 4/236 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K + ++ L+ E + V G+ +E + + FD IILDL L + G Sbjct: 7 RILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 67 VCRAVR-ETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHT 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ ++ G L +++ V V+ I LT E++++ L+ T+ + + Sbjct: 126 ESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 E + ID + LR KL + ++ TV G GY + + E Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFEAPQSQDAPSHQE 241 >gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 236 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K +A ++ + E + V G++ + + K D I+LD+ L G + Sbjct: 3 KLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+R Sbjct: 63 VCRTVR-QTYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ +L ++L++ TVE G + LT +E++++ L+ + LT+E L Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + YI T G GY LR Sbjct: 182 SVWGFDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTLR 227 >gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V+ GE+G++L FD I+LD L G Sbjct: 1 MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K TP+ +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++L V + I LT KEY ++E + LT+ M H++D Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ + K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEEE 224 >gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L+ E + V GED + + + D ++D+ + + G+ Sbjct: 3 KILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDGWA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ALR P+ +L+ KV+G + GADDY+ KPF+ EL+ R++A+++R R Sbjct: 63 LCSALR-ESFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYRI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ G LS+N + G +I L KE++++ L+ T T+E + L+ Sbjct: 122 ASSQVVELGGLSMNRSDFQLVANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLWGM 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + + +DV I +LR++ G I T+ G GY L E A Sbjct: 182 NYEGDERTVDVHIKRLRERFPEEDFGFR-IVTIRGLGYRLEERA 224 >gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] Length = 230 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I GDL+++ TVE +G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 242 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK +F+V G D + + + +D ++LDL L ++ G E Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R+ + TPV +L+ + DKV GL+ GADDY+ KPF+ E++ARI A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S G +++ V V + LT KE+++++ L +N L Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ L ++ + +++D+ I LR+K+ + Y++T+ G GY D Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240 >gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK +F+V G D + + + +D ++LDL L ++ G E Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R+ + TPV +L+ + DKV GL+ GADDY+ KPF+ E++ARI A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S G +++ V V + LT KE+++++ L +N L Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ L ++ + +++D+ I LR+K+ + Y++T+ G GY D Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240 >gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] Length = 241 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57 R+L++EDD + +I L SE F V G +E K D ++LDL L + Sbjct: 13 RLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGV 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +V R +R STP+ ++S S D+V GL+ GADDY+ KPF ELVAR RA++R Sbjct: 73 SGLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLR 132 Query: 118 RSRGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 RS + ++ ++++ + V G ++L+ KEY+++E+ +++ Sbjct: 133 RSARNGDSGAKEVLRFDEITLYPEECRVTRGGQEVNLSPKEYRLLEVFMQSPKRVWSRDK 192 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+KL YI TV G GY Sbjct: 193 LLERVWGIDFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGYRF 240 >gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 18/247 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ +A + L L+ + V + G GIEL + D +ILDL L + G Sbjct: 2 MKILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R +TP+ +L+ ED++ GL SGADDY+ KPF+ E+++R++AI+RR+ Sbjct: 62 EVCRRIRT-WANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAG 120 Query: 121 GHAQSLIV-----------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 ++ + G L +N+ A+ V V + LT KE+ ++ L++ Sbjct: 121 LYSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAK 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + T+E LN ++ + + +DV I LRKKL + + I+TVWG GY Sbjct: 181 APDRVFTRETLLNQVWGYSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGYKFVP 240 Query: 224 NAKDETC 230 + + Sbjct: 241 PGMESSS 247 >gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 226 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 236 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 9/233 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E + V+V GE+ + + + D I+LD+ L G EV Sbjct: 5 ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 CREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHATA 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G + IV GDL+++ D+ V + +I LT +E+++I L+ +T+E Sbjct: 124 PAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + YI T G GY L+ +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYLKAGEED 236 >gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1] gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1] gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] Length = 230 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 67 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + ++ V + + LT KE++++ L+ + ++ Sbjct: 127 KAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFSR 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 237 >gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae] gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae] Length = 231 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +DD +A + + L+ E + V G++ I++ + D +ILD+ + + Sbjct: 1 MKNITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV R +R K + P+ LS +S DKV+GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGFEVTRRIR-EKHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q G L+++ + +TV + G I LT KE++++ LL+ N Sbjct: 120 RFMKLNQPKTKQNSNLEFGGLTISPEQRTVTLYGKNIELTPKEFEILFLLASNPNKVYRA 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 EDIFQKVWGDAYYEGGNTVMVHIRTLRKKLEEDKRKNKLIQTVWGVGYKF 229 >gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] Length = 229 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + + L+ ++ V GE+ +E+ K E+D I+LD+ L GFE Sbjct: 4 KVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ DK+ GL+ GADDYI+KPFN E+ AR++AI+RR Sbjct: 64 VCRQIR-DFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAK 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++V GDL ++ +++ V ++LT KE+ ++ELL++ N ++E LN Sbjct: 123 KDGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYFR 228 >gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL F2-208] gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL N1-067] gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL S4-171] Length = 237 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237 >gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + ++ L+ ++ V G + +E K ++D ++LD+ + G E Sbjct: 10 KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ AR++AI+RRS Sbjct: 70 VCQMVR-EFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSGK 128 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + VN LD++ V V G ++LT KE+ ++ELL N ++ L+ Sbjct: 129 KQAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLS 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ G YI T WG GY + Sbjct: 189 TIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 234 >gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD+ + I+ L+ ENF V GE+ + L K EFD I+LDL L G + Sbjct: 4 RILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFSGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R K PV I+S S DK GL GADDYISKP + EL AR+ A +RR+ Sbjct: 64 ILKKVR-EKSLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + +LS++L +V+V+ LT KE+ +++L ++ TKE Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +I+V I +LR+K+ YI T+WG GY L E Sbjct: 183 YQFIWQDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKLGE 231 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 5 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 65 VARQIRKEHDT-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR +A+ Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPDAE 238 >gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX] gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX] Length = 230 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ +L+ E F V V G +E+ D ++LDL L + G E Sbjct: 3 RVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLR-QKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTA 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L G + ++++ V V+G + L KE++++E+L LT+ ++ + Sbjct: 122 DDTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + K +DV I +LR K+ +I TV G GY Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGYKFEPE 227 >gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] Length = 230 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 5 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +R Sbjct: 65 VARQIRKEHDT-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123 Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR +A+ Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPDAE 238 >gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + + L+ E F + G + L + + D IILDL L I G EV Sbjct: 6 LLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLMLPGIDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + V +L+ + D+V GL+ GADDY++KPF+ ELVAR+RA+ RR R Sbjct: 66 CHRLRTFSDAY-VLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRPRHA 124 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G L++++ + G + LT EY ++ +L+ T+ + + Sbjct: 125 DDEPAPLLVQSGPLTIDVARHEALLAGEPLKLTNLEYALLSVLASAPGRVFTRAQLIERV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDV I LRKKL + +I TV G GY + Sbjct: 185 WGNDYFGDDHVIDVHIANLRKKLGDDPTRPTFIMTVRGIGYRFGD 229 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ +A I++ L++ ++ V G++ E Y+ D ++LD+ L I G + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R P+ +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIRKDSTI-PIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L++++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL + IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLEGGPNWE--IETVWGVGYKFE 226 >gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 227 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI+++ED++ + + L +++E F V G+ ++L + Y D +ILD+ L ++ G+ Sbjct: 5 RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGWT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 V R +R P+ +L+ DK+ G G DDY+ KPF+ +ELVAR++A R Sbjct: 65 VCRQIR-QGSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSRG 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS+ ++ V + I LT KE+ ++ L+ ++E L+H+ Sbjct: 124 NANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + +D + LR KL N YI TVWG GY ++ Sbjct: 184 WGYDFYGDSRTVDAHVKNLRSKLGNYG---RYIVTVWGVGYKFDDSV 227 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L +E F V GE + + +D +ILD+ L I G+E Sbjct: 9 RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGWE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ D+V GL+ GADDYI KPF+ E+VAR++A++RR+R Sbjct: 69 VCREIR-KISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127 Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G++ + +A+TV V G + LT KE+ ++ L+ +E L+ ++ Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D + +LR+KL+ AG I TVWG GY L Sbjct: 188 GYDFYGDSRTVDTHVARLREKLNQ-AGAPPLIATVWGVGYKLE 229 >gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family [Megamonas hypermegale ART12/1] Length = 230 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+K + +E K E + + G++ +++ + D I+LD+ + I GF Sbjct: 1 MKVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ +++ +K+ GL+ GADDYI KPF+ E++ARI+AI+RR + Sbjct: 61 EVCRVIR-KTSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQ 119 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +L +NL TV + + LT KE +++ L+ +K+ +++M LN L Sbjct: 120 PKTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I +LR KL GK I+T+WG GY Sbjct: 180 WGYDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGYKFE 223 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ +A I++ L++ ++ V G++ E Y+ D ++LD+ L I G + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R P+ +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIRKDSTI-PIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L+V++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL + IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLEGGPNWE--IETVWGVGYKFE 226 >gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 282 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ +A ++ L+ E + V G +EL + D I+LDL L G + Sbjct: 47 RILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLMLPVKDGMD 106 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ + DKV GL+ GADDY++KPF EL+AR++A +RR Sbjct: 107 VCREVRGKLNT-PIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLRRQIK 165 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I L ++ D V G + LT +E+++I L+ + +T+E Sbjct: 166 SEAAPEVAKEEPQGIRLDTLFIDTDMYVVYKDGDPLDLTHREFELIYYLAKHPSKVMTRE 225 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV I +LR+K+ YI T G GY++R Sbjct: 226 HLLQAVWGYEYFGDVRTVDVTIRRLREKIETDPSKPEYIVTRRGLGYMMR 275 >gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 231 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ + + I L ++ EN+ VY G + + + + + D I+LD+ + ++ G Sbjct: 1 MNILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ +R A + P+ ++ M + DKV L GADDY+ KP + EL AR+ + +RR Sbjct: 61 SVIQKVR-AISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCY 119 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +A+ + TG+L + + V +I L KE+++++LL TK+ Sbjct: 120 KYAEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEE 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +++ + I V + +R+K+ + YI+T+ G GY + A E+ Sbjct: 180 VWEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIERVAMHES 231 >gi|315122690|ref|YP_004063179.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496092|gb|ADR52691.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 236 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 205/236 (86%), Positives = 219/236 (92%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ALA+SIELMLKSENFNVYVT+LGEDG++L K Y++D I+LDL L DI GF Sbjct: 1 MRVLLIEDDSALANSIELMLKSENFNVYVTNLGEDGVDLGKIYDYDIILLDLNLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+ISTPVCILSGMSSIEDKVRGL GADDYISKP NK+ELVARI AIVRRSR Sbjct: 61 EVLRTLRMARISTPVCILSGMSSIEDKVRGLGYGADDYISKPLNKDELVARIHAIVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD Sbjct: 121 GHAQSVIATGDLVVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 GRDEPEVKIIDVFICKLRKKLSNAA GKNYIETVWGRGYVLRE+ K+ TCEYLETA Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAADGKNYIETVWGRGYVLRESDKNATCEYLETA 236 >gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + LK+E + V + GE+G+EL K E I+LD+ + I G + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + GD+ +N+ V V + LT +E+ ++ELL+ K ++ E Sbjct: 125 NGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I K+R+K+ Y++TVWG GY + ++ Sbjct: 185 ERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233 >gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 240 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 110/230 (47%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I+ L +N+ V + G+ + L + + D +ILD+ L D GF Sbjct: 7 KILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFEQFNPDLVILDVNLPDAIGFN 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF---NKEELVARIRAIVRR 118 + + ++ V +L+ + DK+RG GADDY++KPF E VA I R Sbjct: 67 LCQDMQSRNGVF-VLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQRV 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ L ++ + V + LT E+ ++ L+ + + + Sbjct: 126 VTTAEQKRLIFEKLMIDPVRREVSFNNQPVPLTALEFDLLHFLASHPGRVWRRSELIQEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + +++DV I ++RKK+ AG I+TV G GY + + Sbjct: 186 WDYEYVGDQRVVDVHIGQIRKKIEIDAGQPALIQTVRGVGYKFECPTQPQ 235 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDD + + L L++ F+V D G +L K D I D+ + ++ GFE Sbjct: 4 KILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ S P+ LS M++ DK+ GL GADDYI+KPFN E+VAR+++ +RR Sbjct: 64 LTKRVRI-TSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKYK 122 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G+L+++ T++ G I LT E++++ L + TK Sbjct: 123 LDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + V I KLR+KL + + Y++TV G GY + ++ Sbjct: 183 ERINGEYFENDDNTMMVHISKLREKLGDDSKRPKYLKTVRGLGYKIEKS 231 >gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + L+ F V G++ + + IILDL L + G + Sbjct: 5 RILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGMDGRD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +L+ ++V G + GADDY+ KPF+ ELV R++A+++R+ Sbjct: 65 VCAQIR-QHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L+ +DA+ VEV G ++LT KE+ ++ ++ R + ++E L Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELLR 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 +++ + + + +D I +LR+KL A YI TVWG GY Sbjct: 184 DVWNYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFE 230 >gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ++A +IE L +++ V V G++ EL +E+D I+LD+ L I G Sbjct: 1 MKILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R TP+ +++ ++ D+V GL +GADDY+ KPF +EL AR+RA++RR Sbjct: 61 SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++ ++ + V Q I L+ KEY+++E + ++ L HL+ Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 PE + I LR+KL + IETV+G GY L+E + Sbjct: 181 FERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRLKEKPE 226 >gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 226 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] Length = 230 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ +A ++ + E F V + GE+ + + +FD +ILD+ L + GF Sbjct: 4 RILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DKV GL+ GADDY++KPF+ EL+AR+RAI+RR+R Sbjct: 64 VCREIR-RFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRV 122 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S T GD+++NL + V + LT +E++++ L ++E Sbjct: 123 AESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+KL + YI+T G GY + Sbjct: 183 LLEEVWGYDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGYYFQ 231 >gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262] gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL J2-064] gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL J1-208] gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262] gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816] gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220] gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes str. Scott A] Length = 237 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK + + L E F V + + G++G+ + +ILD+ L G++ Sbjct: 6 KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDGWD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ S DKV GL+ GADDY+ KPF+ +EL+AR++A++RR Sbjct: 66 ICREIR-RMSDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++IV +L ++ + V+ Q + L KE++++ L+ N T+E L ++ Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + +LR+K+ + I TVWG GY Sbjct: 185 GFDYYGDSRTVDVHVNRLREKIGSE-NDPWKISTVWGVGYKFE 226 >gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 235 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + D IILDL L G E Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL AR++A +RR Sbjct: 63 VCREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L+++ DA V +G I LT +E++++ L+ +T+E Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYLRNPEQE 235 >gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] Length = 268 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A I L+ E F V G++ + + +DA +LD+ L G Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR+LR IS P+ +LS S DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ G+L++NL + V +I LT KE+ ++ELL T+ +++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P ++DV+I KLRKK+ + + I+TV G GY + Sbjct: 226 YHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIE 266 >gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ I L+ E F V G +EL + F IILDL L + G + Sbjct: 3 RILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGED 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + P+ +L+ + E+++RGL GADDYI KPF+ ELVAR+ A++RR R Sbjct: 63 VCKQLRRQGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRRYRS 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ + ++G + LT E++++ ++ T+ L Sbjct: 123 NNGVLAEVMEFADGDLVIDTLRRQATLRGQLVDLTATEFKLLAAMAKSPGRVFTRGELLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID I LR+KL I TV+G GY Sbjct: 183 IAQGALPTGFDRTIDSHIKNLRQKLEPKPDEPQLIRTVYGVGYKF 227 >gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++E + V G + ++ K + I+LDL L I G E Sbjct: 5 KILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGISGME 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R P+ +L+ S DK+ GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G+L+++ V ++ LT KE++++ +L + LT+++ L+ + Sbjct: 125 NTVAVSTNSRFGELTIDFSKYEVRKNDIKVDLTLKEFELLNILVKNRGKVLTRDVLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + +DV I LRKK+ + YIET+ G GY + + Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIEDDDSSPKYIETIRGIGYRFSYDEE 232 >gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4] Length = 236 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + VY GE+ I++ + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR + Sbjct: 64 VCRELRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + IV G L ++ DA V + I LT +E++++ L +T+E Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRNPEQE 236 >gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 226 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGYKFEP 226 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L I LK E+++V GE+ ++ +DA+ILD+ + + G Sbjct: 1 MRILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R +TPV +L+ S+ED+V+GL +GA+DY+ KPF EEL+AR+R +VR++ Sbjct: 61 SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L V++D V G I L+ KE+ ++ + + L++E HL++ Sbjct: 121 AVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DV+I LRKK+ + I TV G GYVLR N Sbjct: 181 YDYMGSSNVVDVYIRYLRKKI-DEGFEPKLIHTVRGAGYVLRVNG 224 >gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 224 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K + I+ L+ E + V GE+G+++ FD +ILD L + G Sbjct: 1 MRILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ L+ K +TPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKEE 223 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +E+ L+SE + V D G D +E + E D I+LD+ L + G E Sbjct: 4 KILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R T V +L+ SS+EDKV GL GA+DYI+KPF EEL+ARIRA +R Sbjct: 64 LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ +N + V G RI LT +E+ ++ L K L +E L Sbjct: 124 PLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++DV+I +RKK+ + G + I TV G GYVL+EN Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKI-DHGGTQELIHTVRGVGYVLKEN 231 >gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 234 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 113/234 (48%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I L+ ENF ++ G +E + D I+LD+ L ++ G Sbjct: 1 MNILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D++ GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170 G + T SV+LD Q + LT E+ ++ + Sbjct: 121 SLRHGGQPNQVYRTNHFSVDLDQHLATRQLDNEESELLDLTTLEFNLLSTFMSYPGRVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ L+ + +++D I +LRKK+ ++I+TV G GY ++ Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPSFIKTVIGVGYKFEDD 234 >gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1] gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1] Length = 235 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+V GE+ ++ D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S I GDL ++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR + Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLRNPENE 235 >gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1] gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1] gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 235 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+V GE+ ++ D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S I GDL ++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR + Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLRNPENE 235 >gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRSRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++DDK++ + I++ L++E +N+ G + + L FD IILD+ + + Sbjct: 1 MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPVLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +R + P+ LS K+ GL GADDYI+KPF EL+AR++A +RR Sbjct: 61 GISACLKIR-EDYTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRR 119 Query: 119 SRGHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + +++ N D V V+G +I LT KE+ ++E L+ + + + Sbjct: 120 YKKFNVEPQNSSSITIEELTINFDTHEVTVRGDKIKLTPKEFDILECLAKNRGVVFSVQK 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + I V I LR+K+ YI+TVWG GY + Sbjct: 180 LYETIWNEQFAVSDTSIVVHITNLRQKIEIDPKSPKYIKTVWGVGYKI 227 >gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] Length = 244 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F V++ + G+ + D I+LDL + G Sbjct: 11 KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLMMPGEDGLS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 71 ICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRRPA 130 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q ++ G +L A+T+ G + LT E+ M++ L +++E Sbjct: 131 PEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMSREK 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + YI+TVWG GYV + Sbjct: 191 LAQQARGREFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVFVPDG 242 >gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E F+ + GE IEL + D I+LD+ L + GF Sbjct: 4 KILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR ISTP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLR-ESISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + + GDL ++++ V I LT +E+++++ L+L+ ++E L Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V+ +DV + ++R+K+ YI T G GY + Sbjct: 183 EKVWGYEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGYYFNK 230 >gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ + + L+ E + V GE G+++ + D ++LDL + + G + Sbjct: 6 KILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLSGND 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + PV +L+ + DK+ GL+ GADDY++KPF ELVARI+A+ R Sbjct: 66 VCRIIRQESET-PVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L+V+++ + ++ G I LT E+ +++L++ ++ L+ L Sbjct: 125 RTFAPVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + ID I LR+K+ +YI+TV+G GY L Sbjct: 185 DTYEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRLE 226 >gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 235 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + D IILDL L G E Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL AR++A +RR Sbjct: 63 VCREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L+V+ DA V +G I LT +E++++ L+ +T+E Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYLRNPEQE 235 >gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE +E + D IILDL L I G E Sbjct: 4 KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVRAKHTM-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL+++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 230 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A+ + L+ E + V G + +E + + D I+LD+ L ++ GF+ Sbjct: 4 HILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLRA+R PV IL+ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VLRAIR-QASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 V DL ++L TV G I LT +E+Q++ +L+ T++ ++ Sbjct: 123 VLREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I +LR+KL Y+ T G GY Sbjct: 183 QVWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGY 225 >gi|300864039|ref|ZP_07108940.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300337962|emb|CBN54086.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 229 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I L + + V G+ + L + D +ILD+ L D G++ Sbjct: 5 KILVVDDDPAIRNLIHRYLSQQGYQVESAGDGQTALGLFEQLNPDFVILDVNLPDTTGYK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ V +L+ + DK++G +SG DDYI+KPF+ E+ R+ A R Sbjct: 65 LCQEMQSRTGVF-VVMLTSRTDEADKIKGFESGVDDYITKPFSLVEIGFRVGAILKRKRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ G L+++ + V + G + LT E+ ++ L+ + + L + Sbjct: 124 VTPAEQQSLIFGPLAIDPVRREVMLSGQTVSLTALEFDLLYCLASKPGRVWRRAELLQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + +++DV I ++R+K+ A + I+TV G GY Sbjct: 184 WDYEYVGDQRVVDVHIGQIRRKIEPDANQPSMIQTVRGVGYKFE 227 >gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis serovar finitimus YBT-020] Length = 230 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 230 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D ++ Y D I+LD+ + + G Sbjct: 10 RILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + TPV +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 70 AARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 129 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + GDL ++L + V G + LT E+ ++E+ LT+E Sbjct: 130 AAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + AAG + TV G GYVLR Sbjct: 190 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLR 237 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + ++L + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE 231 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ +A ++L L+ E + + G DG+ + ++D I+LD+ L ++ G + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + TPV +L+ S +EDKV+GL GA+DY++KPF EEL+ARIR +R S+ Sbjct: 64 VLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQN 123 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS+N + V G I LT +EY ++ L LT+E L ++ Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I +R+KL A I+TV G GYVL+EN Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLEIANATP-IIQTVRGVGYVLKEN 227 >gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 226 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in phosphate regulation) [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D+ A+ + L+ E+F V G + + +FD IILDL L + G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R AK+ TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARIRAI RR+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 RGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + GDLSV+ + H++HLT KE++++ R N ++E Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 LN ++ E +++D+ + LR+K+ + Y++TV G GY L + A D+ Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHDQA 237 >gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] Length = 229 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + +V GE+ ++L + +D I+LD+ L GF+ Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-EFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ ++ +++ V ++ I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RDSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYFR 228 >gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42] gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ +EL + D I+LD+ L + G + Sbjct: 4 KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR Sbjct: 64 VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I+ G+L + + + ++ LT KE++++ L K LT++ Sbjct: 124 SSLSQGREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + L+ +++ + +I+DV I LR K+ + YI+T+ G GY L E +E Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239 >gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 228 Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+ +L + L+ E F V GE +E +E IILD+ L + G E Sbjct: 7 RILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDGTE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ D+V GL+ GADDY++KPF ELVAR+RAI+RR++ Sbjct: 67 VCRRIRAQ-SDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A L +NL ++ V V G + LT E++++ L+ ++ L + Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + + +DV I LR+K+ +I T G GYV R Sbjct: 186 WG-DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGYVFR 228 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 127 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL N1-067] Length = 236 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 126/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR Sbjct: 63 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ I+ GDL + ++ V + + LT KE++++ L+ + ++ Sbjct: 123 KAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233 >gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 235 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V G++ + L D ++LD L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + TPV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR + Sbjct: 63 VLRQIR-SNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q+ GDL+++ A V G I LT +E++++ L+ +T+E Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR + Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPTEE 235 >gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 232 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|329890527|ref|ZP_08268870.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta ATCC 11568] gi|328845828|gb|EGF95392.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta ATCC 11568] Length = 233 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 164/226 (72%), Positives = 193/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR KI+TPV ILSG I+ KV+ GADDY++KPF+K+EL+AR A+VRRS+ Sbjct: 61 EVLRQLRNGKINTPVMILSGSHEIDTKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ A+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPAE 226 >gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 230 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL ++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL J1-023] Length = 240 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR Sbjct: 67 VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I+ GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 127 KAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 224 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K ++ I+ L+ E + V GE+G+++ +D I+LD+ L G Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR K STPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA+VRRS Sbjct: 61 SVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E N LT+ M H++D Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IIDV++ LRKK+ + K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DRESDKKLIHTVRGVGYILKEE 223 >gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 242 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +D+ + ++ L L E F V + GE+ + L + + D I+LD+ L + G +V Sbjct: 13 VLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLDV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ S D V GL+ GADDY++KPF ELVARIRA +RR++ Sbjct: 73 CRTIRQESSV-PIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131 Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+ + ++V +D V+V+G + L KE+ ++ L LT+++ L+ Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + K +DV + +LR K+ + I TV G GY L + Sbjct: 192 VWGSDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLERD 238 >gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL S4-378] Length = 240 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR Sbjct: 67 VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I+ GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 127 KAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+ L + I LK ++V GE+ ++ ++ E+D +ILD+ + + GF Sbjct: 1 MKILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR T V +L+ S +DKV+GL GADDYI KPF+ EL+ARIRA+VRR Sbjct: 61 EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + ++ G+L +N K+V G +I LTGKEY+++E L KN L+++ H++D Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + IIDV I +RKK+ + GGK I T G GYV+++ Sbjct: 181 FDYEGDSNIIDVLIKNIRKKI-DVEGGKQIIYTKRGLGYVIKDE 223 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ EN+ G++ ++L + F ++LD+ + ++ G Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +L+ S D++ GL+ GADDYI+KPF+ EL+ARI A +RRS Sbjct: 67 ACMRIR-EFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L ++ ++++V V G I LT KE+ ++ L + ++E L+ + Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ +D I LR KL A G I+TVWG GY E Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEE 227 >gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + +V GE+ ++L + +++ I+LD+ L + GF+ Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQVR-EFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTER 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + IV GD+ ++ + + V + ++LT KE+ ++ELL++ ++ ++E LN Sbjct: 123 QTEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYFR 228 >gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 276 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD +A + L V G + + D ++LDL L + G E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 78 VCRRMR-ERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L+++ A+ G + LT +E+ ++ ++E + ++ Sbjct: 137 DPAPDPVRLGRLALDPTARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + V I +LR K+ + I TVWG GY +ET E Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE---AEETGE 243 >gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2] gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2] gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7] Length = 236 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +D+K + + ++ L+ E + V V GE+ + L +++ +ILDL + + G Sbjct: 4 IRILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR P+ +L+ DKV GL GADDYI+KPF+ E++AR+++++RR Sbjct: 64 EVCRRLRNKTNI-PILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFL 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ I DL+++L + + G + LT KE+++++ L+ TK Sbjct: 123 ILGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++++ + + V I KLRKK+ +I+TVWG GY + Sbjct: 183 LFRNVWESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGYKFVGEQDE 236 >gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 228 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 9/227 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL++D++ + + L L+ E F V G++ ++ ++ D IILDL L +I G Sbjct: 1 MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ + +R P+ +L+ DK+ GL+ GADDY+ KPF+ E+VAR++A++RRS Sbjct: 61 MEIAKEIR-KTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRS 119 Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + I G L ++ +A+ V+V G + LT E+ ++ L + L++E L Sbjct: 120 SGIPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ E + +D + +LR+KL AA YI+TVWG GY Sbjct: 180 ANVWGYDYFGEARTVDTHVTRLREKLQEAAS---YIKTVWGVGYKFE 223 >gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LRV PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRVRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 239 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F+V G + + + + D +LD+ L D+ GF Sbjct: 12 RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV L+ +DKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 72 VTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 132 MDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ I+T G GYVLR Sbjct: 192 EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVLR 234 >gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 236 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G+ G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I+ GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 230 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ ++ L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205] Length = 234 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + ++ L+ E F+V G+ + K F+ I+LD+ L I G + Sbjct: 12 RLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLPGINGLD 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R L V ++S + D+V GL+ GADDY+ KPF ELVAR RA++RR + Sbjct: 72 LCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQA 131 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q +LS+ V + G + L+ KE++++EL ++E + ++ Sbjct: 132 SDQQPSELKADNLSLFPAECRVCLDGLELKLSPKEFKLLELFMQNPKRVWSREQLIEQVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K +DV I LR+K+ + + TV G GY Sbjct: 192 GFDYIGDNKTVDVHIRWLREKIEEDPSNPSKLVTVRGFGYRF 233 >gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+ +E ++D ++LD+ L I G + Sbjct: 5 ILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKISGMDF 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 L+ +R K PV I+S DK GL GADDYI+KPF+ EL AR++A +RR Sbjct: 65 LKKIR-EKSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTAY 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I +L ++LD TV G I LT KE Q+++L TK+ Sbjct: 124 VIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I+V + +LR K+ + YI+T+WG GY L E Sbjct: 184 TSVWNDDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRLGE 231 >gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 230 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD ++ +E L E F V GE+G+ FD IILD+ + + G E Sbjct: 4 HILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR +A +RR Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL ++ TV + ++ LT KE+++++L + +N TK N Sbjct: 123 YSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIYN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKLE 228 >gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187] gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1] gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187] gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1] gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + LK+E + V + GE+G+EL K E I+LD+ + I G + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + GD+ +N+ V + + LT +E+ ++ELL+ + ++ E Sbjct: 125 NGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I K+R+K+ Y++TVWG GY + ++ Sbjct: 185 ERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233 >gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 126/224 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + H + L E++ V GE+ + E+D ++LD+ L + G Sbjct: 1 MQILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +ALR S P+ +L+ + DKV GL +GADDY++KPF+ +EL ARIRA+ RR + Sbjct: 61 AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ GDLS++ KTV+ I LT +EY ++E N LTK L H++D Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I++ ++ LRKK+ A I T+ G GY+LRE Sbjct: 181 YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYILREE 224 >gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V + GE+G++ + D ++LD+ + + G E Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR Sbjct: 65 VCRRIR-KLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTT 123 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TTAQTESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + IDV + +LR+KL A K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229 >gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 232 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + + V G++ IE K E+D ++LD+ L GFE Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 63 VCQTIR-EFSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNK 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S++ GDL ++ +++ V ++ I+LT KE+ ++ELL N ++E Sbjct: 122 KSGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESL 181 Query: 175 LNHLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L +++ + +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LEYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYFFR 231 >gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 230 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE G++ FD +ILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 230 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TV G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++ED+ ++ + + L + F V GE+ +++ + ++LDL L I GF Sbjct: 5 IKVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPGIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + + + +L+ S DK+ GL+ GADDY+ KPFN EL+ARIRA +R+ Sbjct: 65 EVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKID 124 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L + ++LDA+ +G I LT E+ M+++ N +++ LN Sbjct: 125 NAKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNI 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++K +DV + ++R+K+ + IETVWG GY L+ Sbjct: 185 VWGKNYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRLK 229 >gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G+D +E + FD +ILDL L +PG Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 70 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G+L++++ V V G + LT E++++ LS ++ + + Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + ID + LR K+ + ++ TV G GY + K Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 236 >gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] Length = 229 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L + V GE+ +EL K E+D ++LD+ L + GF Sbjct: 4 RVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIR-DFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGR 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + D+ ++ +++ V +Q I+LT KE+ ++ELL+ + ++E LN Sbjct: 123 KEEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 LVWGYEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYFR 228 >gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 10/243 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L ++ + F V G G+E+ + D IILD+ L I GF V Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVMLPGIDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA----IVRR 118 RA+ + + P+ +L+ + ++ GL+ GA DY+ KPF+ EL+AR+RA R+ Sbjct: 64 CRAV-AKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ G + ++ +++ V Q + L+ KE+ ++ L L++++ L + Sbjct: 123 RQAPTSNVLSIGPVQLDRNSRRVWYQDREVELSQKEFDLLACLMHNAGVALSRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA-----KDETCEYL 233 + + IDV + LR+KL I TV G GY ++ + + E+ Sbjct: 183 WGNDFLGSNRTIDVHVRWLREKLEPDPANPVLIRTVRGIGYCFQDPSFDPLGRPSRQEHE 242 Query: 234 ETA 236 +T+ Sbjct: 243 QTS 245 >gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] Length = 232 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD+A+ + L E F+V + GE+ ++ C FD +ILD+ + + G E Sbjct: 6 HILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ +R + + P+ I+S S DK GL GADDYI+KPF+ E AR++A++RR Sbjct: 66 VLKVIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H Q ++V G L +++ ++ G + LT KE+ +++L +N TKE Sbjct: 125 YAGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + II+V I +LR+K+ + YI+T+WG GY Sbjct: 185 QLIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 231 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ +A I++ L++ ++ V G++ E Y+ D ++LD+ L I G + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R P+ +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIRKDSTI-PIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L++++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLE--GGSNWEIETVWGVGYKFE 226 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +E+ L+SE + V D G D +E + E D I+LD+ L + G E Sbjct: 4 KILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R T V +L+ SS+EDKV GL GA+DYI+KPF EEL+ARIRA +R Sbjct: 64 LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ +N + V G RI LT +E+ ++ L K L +E L Sbjct: 124 PHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I +RKK+ + G + I TV G GYVL+E Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKI-DYGGTQELIHTVRGVGYVLKE 230 >gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] Length = 240 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 127 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] Length = 239 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 4/233 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ +E + ++FD I+LDL L + G Sbjct: 7 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRAIR-DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GDL +++ + V+G + LT E++++ L+ + + + Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E + ID + LR KL + ++ TV G GY A+ E + Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQPEKAD 238 >gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 223 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + L L+ E F D GE G+ + D I+LD+ + + G+ Sbjct: 4 ILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDGYRF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 +R + P+ L+ S D+V GLQ GADDYI KPF+ E+VAR+ A+ R Sbjct: 64 CMHVR-ERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKGT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G + ++ A+ V+V G + LT KE++++ L + T+E L+ ++ Sbjct: 123 DVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWGI 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D I LR KL A YI+TVWG GY E Sbjct: 183 HYVGSTRTVDTHIKTLRIKLGEAG---QYIQTVWGVGYKFDE 221 >gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD + IE LK ++++V GE+ + L + +FD I+LDL L + G E Sbjct: 4 RILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV I+S S DK GL GADDYISKPF+ EL AR++A +RR+ Sbjct: 64 LLKHIR-ETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +I DL ++L + +V+V+G + LT KE+ +++LL + TKE Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ +I+V I +LR+K+ YI T+WG GY + + Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGYKMGD 232 >gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 234 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L+ + VY G++ + + + I+LDL L D+ G E Sbjct: 7 KILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLMLPDLSGEE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+ + ED ++GL GADDYI+KPF+ ++LVAR+ A++RR+ Sbjct: 67 ICKIIRKKSRV-PIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLRRTSD 125 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL ++ V + ++LT EY+++ L T T++ +N Sbjct: 126 DPVPLSNIFSFNNGDLVIDSLKYEVRKGNNVVNLTPNEYKILMTLVKYPGKTFTRDELIN 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I LR+K+ YI TV G GY Sbjct: 186 MALGDDFDGFDRTVDTHIKNLRQKIETDPKSPKYILTVHGVGYRFE 231 >gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K++A ++ L+ E F+V G + +E K + D ++LD+ L G E Sbjct: 4 HILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +L+ S DKV GL+ GADDY+ KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKQYDL-PIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQV 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I G+LS+ +A V+ +G + LT +E+++I L +T+E L Sbjct: 123 AADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ +V+ +DV + +LR+K+ + N+I T G GY L ++ Sbjct: 183 QAVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGYFLSAPEGEQ 235 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD + IE LK ++++V GE+ + L + +FD I+LDL L + G E Sbjct: 4 RILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV I+S S DK GL GADDYISKPF+ EL AR++A +RR+ Sbjct: 64 LLKHIR-ETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +I DL ++L + +V+V+G + LT KE+ +++LL + TKE Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ +I+V I +LR+K+ G YI T+WG GY + + Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGYKMGD 232 >gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 239 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 5/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD ++ ++ L+ + ++V V G +G++ + ++ +ILDL L D+ G++ Sbjct: 3 RILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDVSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + ++ V +L+ S DK+ G Q GADDY++KPF+ EL AR++AI+RR R Sbjct: 63 LCQQMQKETGVY-VLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRRQRM 121 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ L ++ + + V + I+LT E+ ++ ++ + + Sbjct: 122 KTEVASAPVLTFASLVIDPETRAVIREQRLINLTALEFDLLYAMARHPGRVWRRAELIQE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++D E + +++DV I ++RKKL I TV G GY A E Sbjct: 182 VWDFNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFEPPAPKE 232 >gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 268 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 6/239 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 26 RILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 86 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 145 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ + G I LT +E+ ++ + ++ L Sbjct: 146 LAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDLL 205 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 N ++ + E ++ I +LR K+ I TVWGRGY L + Sbjct: 206 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKLAVPGETAAPNGAP 264 >gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 243 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E + V G +++ + D I+LDL L + G +V Sbjct: 5 ILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMDGMDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R ++ TP+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 CREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRG 124 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL + D T G + LT +EY+++ ++ +T+ Sbjct: 125 GASASESRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVMTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E L ++ +V+ +DV I +LR+K+ I T G GY+ Sbjct: 185 EHLLQAVWGFEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYI 233 >gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 224 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ++ ++ L E F V GE+ +++ + D +ILD+ + + G E Sbjct: 3 RILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A PV L+ + D+VRGL++GADDY+ KPF E LVAR+RA++RR + Sbjct: 63 VLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFEVLVARVRALLRRRQA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL ++ T IHLT E++++ L L K+ L ++ Sbjct: 123 ERPQVLRFADLVLDTGTYTARRGDREIHLTALEFKLLHEFMLHPRQVLNKDQLLERVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++V++ +LR+KL A G I TV G GYVLRE Sbjct: 183 DFGGNANVLEVYVKQLRQKLE-AEGEPRLIHTVRGVGYVLRE 223 >gi|111024797|ref|YP_707217.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110823776|gb|ABG99059.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 225 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA + L++E F V V G DG+ + + FDAI+LD+ L G+ Sbjct: 1 MRLLVVEDERRLAAGLRKGLEAEGFAVDVVHNGTDGLWMARENPFDAIVLDIMLPGANGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR TP+ +L+ I D+V GL +GADDY++KPF+ L+AR+RA++RR Sbjct: 61 QVCRTLRNEGNWTPILMLTAKVGIWDEVEGLDTGADDYLAKPFSYAVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ A+ V +G +I LT +E+ ++E L L K L H++D Sbjct: 121 RPRPTVLEVGDLRLDPSARRVWRRGEQIDLTTREFAVLEFLLRHPGEVLPKTDILGHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++V++ +LR KL IETV G GY L +A Sbjct: 181 FDFDGDPNIVEVYVRRLRTKLGR-PTDPPVIETVRGAGYRLVAHA 224 >gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2] gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2] Length = 235 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ LK E FNV G++ I++ + D ++LD+ L + G EV Sbjct: 5 ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 CREIRKKYDF-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNIA 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G L++ DA V + I LT +E++++ L +T+E L Sbjct: 124 PAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + +I T G GY LR ++ Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYLRNPEQE 235 >gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24] gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24] gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24] Length = 226 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20] gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20] Length = 229 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ ++ L+ ++V V G+ +L K FDAI+LDL L I G Sbjct: 3 KILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR K+STPV +++ D+V GL+ GADDYI+KPF+ E+VAR++A++RRS+ Sbjct: 63 LLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQV 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q +I ++ ++ + K V + LT +EY+++ + R + +E L Sbjct: 123 DHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E +++D+ I LR+K+ ++TV G GY L Sbjct: 183 AVWGYEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTLV 228 >gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ L+ E F+V V G + +E K + I+LD+ L G EV Sbjct: 6 ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIMLPYRDGMEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R +R P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR++ Sbjct: 66 CREVRKEHDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQRS 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G LS+ DA V +G I LT +E+++I L+ +T+E L Sbjct: 125 AEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHLLQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + +I T G GY R+ ++ Sbjct: 185 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSSPLWIVTRRGVGYYFRQPDQE 235 >gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ EN+ + D G+ +E ++D I+LD+ + G E Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R K +TPV +L+ ++V+G + G+DDYI KPF+ E+V R++A++RR Sbjct: 66 VCKGIR-EKKATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVS 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +IV L+++ DA + G ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRITADGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPNAAKMIVTVWGVGYKFE 234 >gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 250 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-------EFDAIILDLGL 54 RIL++ED++ + I L L+ E + G +EL + FD ++LDL L Sbjct: 20 RILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQISGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR + + V V+ I+L+ KE+++++L ++ Sbjct: 140 LIRRQGFTSLAAAPVRKFRDVLLYTQECRVTVRHEEINLSPKEFRLLDLFMSYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249 >gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] Length = 230 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE 231 >gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] Length = 224 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ +S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221 >gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] Length = 229 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+ED+ + ++ L E F + D GE G+EL + + D +LD+ L I GF Sbjct: 3 IKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + +L+ + DK+ GL+ GADDY++KPFN EL+ RI++++RRS Sbjct: 63 EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 122 Query: 121 GHAQSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D + ++ ++T G I LT E +I+LL +T++ ++ Sbjct: 123 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKA 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV + +LR K+ + YI TVWG GY Sbjct: 183 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 226 >gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] Length = 235 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D+ AL S+ L + ++V GE G+E+ +FD ++LD+ + G+ Sbjct: 1 MRVLVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIMMPRRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R I TPV +L+ D+ GADDY+ KPF+ L AR+RA+VRR Sbjct: 61 EVVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL V+ A+ V RI +T +EY ++E L +N ++K + ++D Sbjct: 121 PERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I++V++ LR+K+ +A G + IETV G+GY L ++ Sbjct: 181 SAYDGDDNIVEVYVGYLRRKI-DAPFGAHAIETVRGQGYRLVDS 223 >gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] Length = 234 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I LK+E +++ GE+ +E + D ++LDL L G E Sbjct: 3 KILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL AR++A +RR+ Sbjct: 63 VCREIRKDSAV-PIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S IV GDL V+ +A +G I LT +E++++ L+ +T+E Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV I +LR+K+ + +YI T G GY L+ ++ Sbjct: 182 LETVWGYDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGYFLKNPDQE 234 >gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146] gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L E + V G+ G+ L + +DA+ILDL L + G + Sbjct: 11 RILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 71 ICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 130 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++L+ G L+++ A+ V V I LT +E+ ++ + ++ L Sbjct: 131 MGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + ++ I +LR K+ I TVWG GY + Sbjct: 191 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYRFAD 238 >gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 238 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L+ E + V V GE ++ + D +ILDL L I G E Sbjct: 4 KILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREIRKKHDM-PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A I GDL+++ +A +V +G I LT +E++++ L+ +T+E Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++ +V+ +DV + +LR+K+ ++ ++ T G GY LR D+ Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYLRNPDSDQA 238 >gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ +D ++LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+R Sbjct: 64 VCQHIR-EFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL ++ +++ + + G ++LT KE+ ++ELL N +E LN Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + +LR+K+ + Y+ WG GY Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGY 225 >gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] Length = 248 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 17 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 76 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 77 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 135 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV+V G +I LT KE+ ++ LL+ Sbjct: 136 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 195 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 196 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 246 >gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 224 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 136/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + ++D IILD+ + + G+ Sbjct: 1 MKILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ I++K++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKEDE 224 >gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + V GE+ +EL K E+D ++LD+ L + G+E Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ DK+ GL+ GADDYISKPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIR-EFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSK 121 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S+I GDL ++ +++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 NKRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L +++ D +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 232 >gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] Length = 237 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G D + + + D +LD+ L DI GF Sbjct: 9 KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGFS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ L+ +DKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 69 VTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + L ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 129 LEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ N + I T G GY+LR Sbjct: 189 EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLLR 231 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 65 CKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGK 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + + G L V + V + LT KE++++ L N TLT+E Sbjct: 125 QEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] Length = 230 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 236 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ AL + L L+ E F+V G + + + + D ++LDL + ++ G+E Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LRA + TPV +L+ DK+ GL+ GADDY++KPFN EL+ARIRA++RR++ Sbjct: 64 LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 D+ ++ +TV V G + LT E+ ++ L ++ L+ + Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I LR K+ YIETV+G GY Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] Length = 226 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +++ +EL E N G +G E K D +ILD L + G Sbjct: 1 MRILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWMLPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R S P+ +L+ S D+V G + GADDY++KPF+ L+ARI+A+ RR + Sbjct: 61 ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNH 177 T +VN + + + G + LT KE+ ++ ++E L Sbjct: 121 KPEPVSDLIQTIHFTVNKETRDISKDGQAVDSLTPKEFDLLVFFLQHPKQVFSREQLLEQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + + +DV I +LRKK+ GG TVWG GY E+ Sbjct: 181 VWGYQFYGDERTVDVHIKRLRKKID---GGDKLFHTVWGVGYKFEEH 224 >gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +E L+ E F V + GE + L K +ILDL L I G E Sbjct: 6 KILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPRISGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R A P+ +L+ S EDK+ GL GADDY++KPF+ ELV R++A++RR+ Sbjct: 66 ICNKIR-AVSDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRRTYR 124 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL V + V+ G ++LT E++++ L ++E + Sbjct: 125 DSSPLADYLLFNNGDLEVQIKKMKVKKAGEYVNLTANEFKVLLALLTNPGQVFSREQLVQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + ID +I +R+K+ + YI TV+G GY Sbjct: 185 KAFGEDYEGFDRTIDSYIKNIRQKIEDNHKEPKYIITVYGIGYKF 229 >gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 230 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A+ + L+ E + V G + ++ + + D I+LD+ L ++ GF+ Sbjct: 4 HILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLRA+R PV IL+ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VLRAIR-QASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 V DL ++L TV G I LT +E+Q++ +L+ T++ ++ Sbjct: 123 VLREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I +LR+KL Y+ T G GY Sbjct: 183 QVWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGY 225 >gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K ++ I+ L+ E + V GEDG+++ FD IILD+ L G Sbjct: 1 MKILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR K +TPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA+VRRS Sbjct: 61 SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E N LT+ M H++D Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ + K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEEE 224 >gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453] gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453] Length = 231 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IEL LK E ++V G++ ++ + + D ILD+ + + Sbjct: 1 MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV+R +R + P+ LS +S DK+ GL GADDY++KPFN EL+AR+ A +R Sbjct: 61 DGYEVIRQIR-EQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLR 119 Query: 118 RSRGHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R +Q G + + D + V + G I LT KE+ ++ LL+ + Sbjct: 120 RYMQMSQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFST 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 ENIFQHVWGEAYFETSNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTF 229 >gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1] gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E F V GE+G++L K ++ I+LDL + + G ++ Sbjct: 6 ILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIKM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +L+ S DK+ GL GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EVAEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL +N V V R+ LT +E+ ++ELL ++ E Sbjct: 125 SGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I K+R+++ + YI+TVWG GY + + Sbjct: 185 KVWKEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGYKVEK 231 >gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Leuconostoc gasicomitatum LMG 18811] gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ ++ L+ + V + G+ EL FDAI+LDL L + G Sbjct: 3 KILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR KI+TPV +++ D+V GL+ GADDYI+KPF+ E++AR++A++RRS+ Sbjct: 63 VLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQT 122 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ + K V G + LT +EY+++ S R + +E L Sbjct: 123 ERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +++D+ I LR+K+ N ++TV G GY Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGY 225 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + ++ +ILD+ L + G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR STP+ +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RR Sbjct: 67 VCTRLR-QVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + IV L + DA V GH I LT KEY+++ L+ + ++E Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ + I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSSDSAAMITTVWGVGYKLE 235 >gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 237 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 10/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ L E + V G++ ++ + + D ++LD+ L G EV Sbjct: 5 ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 CREVRKKYDF-PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVV 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + IV G L + DA V + I LT +E++++ L +T+E Sbjct: 124 TPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV I +LR+K+ + +I T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRNPEQE 237 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 239 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G D + + + D +LD+ L D+ GF Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 72 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 132 LIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ I+T G GYVLR Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLR 234 >gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 250 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-------EFDAIILDLGL 54 RIL++ED++ + I L L+ E + G +EL + FD ++LDL L Sbjct: 20 RILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ ILS +S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR + + V V+ I+L+ KE+++++L ++ Sbjct: 140 LIRRQGFTSLAAAPVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249 >gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] Length = 230 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55 R+L+++DD + ++E L E F V G I+ + FD ++LDL L Sbjct: 3 RLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLP 62 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G +V R LR + TP+ ++S + D+V GL+ GADDY+ KPF ELVAR RA+ Sbjct: 63 GVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRAL 122 Query: 116 VRRSRGHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +RRS+ + GDLS+ D V +G R++L+ KEY+++E + Sbjct: 123 LRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVWS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++ + K +DV I LR+KL +I TV G GY Sbjct: 183 RNQLIDQVWGTDYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGYRF 233 >gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRSRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226 >gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis serovar chinensis CT-43] Length = 230 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE + LT KE+++++L +N TK Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 246 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 14 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A GDL ++L + V G + LT E+ ++E+ LT+E Sbjct: 134 AAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246 >gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] Length = 235 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + V GE+ IEL K E+D ++LD+ L G+E Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ DK+ GL+ GADDYISKPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIR-EFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGK 121 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + GDL ++ +++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 SKRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L +++ D +V+ +DV + +LR+K+ + Y+ T WG GY R A Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYFRVKA 235 >gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes] Length = 237 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237 >gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L E F ++ G++ +++ + + D +I+D+ + ++ G+E Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ + KV+G + GADDY+ KPF+ ELVAR++A+++R R Sbjct: 63 LCRELR-DYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G LS+N + I L KE++++ L+ T T++ + ++ Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ + I T+ G GY L Sbjct: 182 DYEGDERTVDVHIKRLRERFAQ-PDSPFSIRTIRGLGYRLE 221 >gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica ACS-134-V-Col7a] gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica ACS-049-V-Sch6] gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica ACS-049-V-Sch6] gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica ACS-134-V-Col7a] Length = 224 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNEGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIKVGPLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221 >gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] Length = 242 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 128/240 (53%), Gaps = 15/240 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ E ++V G +G E+ + +D IILDL L + G + Sbjct: 3 KVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI P+ +L+ +K+ GL+ GADDY++KPF+ E++AR++AI+RR Sbjct: 63 ICKKLRQEKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122 Query: 122 HAQSLI---------------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 + + GD+ ++ V V+ ++ +T KE++++ + R N Sbjct: 123 KSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRIN 182 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L++E L+ +++ E +I+DV I LR+K+ YI TV G GY + K Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFEDPKK 242 >gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 137/223 (61%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K LA+ I+ + E F V + GEDG+ + Y +D I+LD+ L I G Sbjct: 1 MRILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR +TPV +L+ +++DKV GL SG+DDY++KPF+ EEL++R +A++RR Sbjct: 61 TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +L ++ KTV+ I L+ KEY ++E L+ KN L++ M + H+Y+ Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDVFI ++R K+ K + T+ G GY L+E Sbjct: 181 EEFDFDSNVIDVFINRIRNKIDKNF-DKKLVHTIRGMGYALKE 222 >gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii] Length = 238 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 6/235 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++L L+ E + V GE G+ + +DA++LDL L I G E Sbjct: 4 RILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVARI+A++RR+ Sbjct: 64 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTDA 123 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + S++ + V G + LT +E+ ++ + ++ L Sbjct: 124 LERNARLDAGRLEVSGLSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 N ++ + E ++ I +LR K+ + I TVWGRGY A E Sbjct: 184 NQVWGYQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKFAAPASGEPT 238 >gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua Clip11262] gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua Clip11262] Length = 236 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR Sbjct: 63 VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I+ GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + ++ +ILD+ L + G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR STP+ +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RR Sbjct: 67 VCTRLR-QVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + IV L + DA V GH I LT KEY+++ L+ + ++E Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ + I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKLE 235 >gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 238 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + + ++D I+LD+ L I G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR +TPV +L+ ++V+G ++GADDY+ KPF+ E++ R++AI+RR Sbjct: 67 VCSRLR-QVKATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + IV L + DA V G + LT KEY+++ L++ + ++E Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ + I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKLE 235 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A ++L L+ + V GE+G+ + D ++LD+ L + G Sbjct: 6 RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A TPV +L+ + DKV L GADDY++KPF EEL+AR+RA++RR Sbjct: 66 VLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRR--V 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ G L+V+ A+ V G + LT +EY ++ELL+ L++E L+ ++ Sbjct: 124 EGEEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV++ LR+KL G I TV G GYVLRE+ Sbjct: 184 GAGVDPNVVDVYVGYLRRKLE-GPGEGRLIHTVRGVGYVLRED 225 >gi|89096455|ref|ZP_01169348.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. NRRL B-14911] gi|89089309|gb|EAR68417.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. NRRL B-14911] Length = 234 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++DD + + + L E F + G + ++L E D IILD+ L D+ GFEV Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R +R P+ LSG D++ G + G DDYI+KPF+ LVA++++ +RR + Sbjct: 66 CRIIRTKTKV-PILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKEL 124 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L+++ D V +G I L KE+Q++ L+ + E Sbjct: 125 SGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ +++ + V I LRKK+ YI TV G GY Sbjct: 185 FDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 327 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD +A + L V G + + D ++LDL L + G E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 78 VCRRMR-ERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L+++ A+ G + LT +E+ ++ ++E + ++ Sbjct: 137 DPAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + V I +LR K+ + I TVWG GY +ET E Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE---AEETGE 243 >gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G +I L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGYKFEP 226 >gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748] gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748] Length = 224 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221 >gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL F2-208] gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A] Length = 246 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 13 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 73 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 132 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 133 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 192 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 193 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 243 >gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +++ IE LK ++V GE E+ K + D I+LDL L + G + Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + P+ +L+ + + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G L+V + + V + G I LT KE++++ L + L+++ L+ Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +I+DV I LR K+ A YI TV GY L Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 235 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I L+ E ++ GE+ +E Y+ D I+LDL L G E Sbjct: 3 KILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ DKV GL+ GADDY++KPF+ EL ARI+A +RRS+ Sbjct: 63 VCREIR-KTSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + G+L+++ DA V G + LT +E++++ LS +T+E Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + + T G GY L++N ++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDNDQE 235 >gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 243 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E + V G +++ + D I+LDL L + G +V Sbjct: 5 ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLMLPGMDGMDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R ++ TP+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 CREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRG 124 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL + D T G + LT +EY+++ ++ +T+ Sbjct: 125 VAGTPESRPQEDKQGLRVGDLFFDADMYTAYKNGTPLDLTHREYELLYYMAKNAGKVMTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E L ++ +V+ +DV I +LR+K+ I T G GY+ Sbjct: 185 EHLLQAVWGFEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYI 233 >gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27] gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44] gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412] gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44] gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27] gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412] Length = 224 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221 >gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 237 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 112/233 (48%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + I+L L + F V G +EL + D IILD+ L D G E Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR +P+ LS + DK+ GL G DDYI+KPF+ ELVARI A +RR+R Sbjct: 65 LCQNLR-KITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRI 123 Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ T+ V + LT KE++++ LLS N + Sbjct: 124 LTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +H++ + + + + V I LRKK+ I T+ G GY L A + Sbjct: 184 YDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAPE 236 >gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 246 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E + V V G D + +DAI+LDL L I GF Sbjct: 1 MRVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR PV +L+ ++D++RGL +GADDY+ KPF+ EL AR+RA+VRR Sbjct: 61 EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H ++ G + ++ V G + L+ KE+ ++ LL + LT+ H++D Sbjct: 121 VHRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+D ++ LR+K+ + + IETV G GY L Sbjct: 181 DAFDATSNIVDQYVRYLRRKI-DLPPAPSLIETVRGVGYRL 220 >gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 234 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTD 56 MR +L+++D + + ++ + L E ++V + + G ++L + + D I+LDL L Sbjct: 5 MRHQTVLVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPH 64 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G ++ R LR + P+ +L+ + D+V GL+ GADDY+ KPF EL+AR RA++ Sbjct: 65 LNGLDLCRLLRREGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVL 124 Query: 117 RRSRGHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RR GDL +N V V+ + L+ KE++++EL ++E Sbjct: 125 RRHTRTQTQDNSAVLRCGDLCMNTQECRVRVRDVEVDLSPKEFRLLELFMRNPRRVWSRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 185 QLIERVWGPDFMGDSKTVDVHIRWLREKLEADPSHPEYLVTVRGFGYRF 233 >gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + + LK++ F V+ GE + L + + D I+LDL L + G E+ Sbjct: 5 ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMDGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R L+ V +L+ + DKV GL GADDY++KPF+ ELVAR++AI+RR R Sbjct: 65 CRRLQRDGGPY-VLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRHT 123 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DL +++ + V+ +G + LT +E+ ++ L+ T+E L Sbjct: 124 SVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +++DV I LR+KL + I+TV G GY Sbjct: 184 RVWGHDFDGVDRVVDVHISLLRRKLEDDPTEPTLIQTVRGVGYKF 228 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE 231 >gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125] gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125] Length = 234 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD +++ ++ L+ E ++V GE+ L + +D ++LDL L G + Sbjct: 5 KILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGID 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R + PV I+S S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 65 CLQWIRTKSVV-PVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I +L V L + TV+ +G I LT KE+Q+++L TKE Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I+V I +LR+K+ + YI+T+WG GY + E Sbjct: 184 YRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 65 CKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGE 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 125 QEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L E ++V V G + +++ + + D +ILD+ + + GF Sbjct: 12 RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR + PV +L+ ++ED+V+GLQ G+DDY++KPF+ ELVAR+ AI+RRS Sbjct: 72 LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSGQ 131 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + IV GDL ++ DA V GH I LT E++++ L L N ++K L+H++ Sbjct: 132 GTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LRKKL G I+TV G GY LR Sbjct: 192 QYDFGGDANIVETYISYLRKKL--DGYGPPMIKTVRGVGYSLR 232 >gi|229114656|ref|ZP_04244070.1| Response regulator [Bacillus cereus Rock1-3] gi|228668721|gb|EEL24149.1| Response regulator [Bacillus cereus Rock1-3] Length = 234 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLIEQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232 >gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + V+ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 224 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L E F++Y G+D + + + D +ILD+ + +I G++ Sbjct: 3 RILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPEIDGWQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ DKV+G + GADDY+ KPF+ ELVAR++A++RR + Sbjct: 63 LCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G+L +N V I L KE++++ L+ T T++ + ++ Sbjct: 123 STSQTIKIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR+K S I T+ G GY L Sbjct: 183 DYEGDERTVDVHIKRLREKFSKYCI--FVIRTIRGLGYRLE 221 >gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 246 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L+S F+ V G++ + Y D ++LD+ L + G + Sbjct: 25 KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGID 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV GL+ GADDY+ KPF +EL+AR++A++RR Sbjct: 85 VLKWIRKEHET-PVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S L++++D+ TV G I + KE++++ L+ KN T+E L ++ Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G IETVWG GY Sbjct: 204 GYDYPGDSRTVDVHIKRLREKLEE--GSNWQIETVWGVGYKFE 244 >gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 232 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 109/225 (48%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + I+ +L+++ V + G + + + FD ++LD+ + DI G++ Sbjct: 5 RVLVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMISEGPFDLVLLDIMMEDIDGYD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL R I TP+ LSG D++ G GAD YI+KPF+ L A+++ ++R R Sbjct: 65 VLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIKRYRQ 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +S G N T + I L+ KE Q+++ N +KE Sbjct: 125 LQESKQQASRIALGPFLFNHHTFTFQKNNQEIALSSKEIQLMKFFMEHPNQVFSKEQLYQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + I V+I LR K+ YI+TVWG GY Sbjct: 185 NIWK-DTVVDNNTIMVYIRHLRTKIEENPTNPKYIKTVWGIGYRF 228 >gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 242 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 124/238 (52%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK +F+V G D + + + +D ++LDL L ++ G E Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R+ + TPV +L+ + DKV GL+ GADDY+ KPF+ E++ARI A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S G +++ V V + LT KE+++++ L +N L Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ L ++ + +++D+ I LR+K+ Y++T+ G GY D Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDD 240 >gi|254419082|ref|ZP_05032806.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196185259|gb|EDX80235.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 233 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 165/226 (73%), Positives = 193/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV KI+TPV ILSG IE KV+ GADDY++KPF+K+EL+AR A+VRRS+ Sbjct: 61 EVLRQLRVGKINTPVMILSGSHEIETKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ AA GK+YIETVWGRGYVLR+ A+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAADGKHYIETVWGRGYVLRDPAE 226 >gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 283 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E + V V G D + +DAI+LDL L + GF Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A PV +L+ ++D++RGL +GADDY+ KPF+ EL AR+RA+VRR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ V G + L+ KE+ ++ LL + LT+ ++H++D Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I+D ++ +R+K+ + G + IETV G GY LR A+ Sbjct: 210 FAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLRTPAE 254 >gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] Length = 236 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233 >gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 240 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K + ++ L+ E + V G++ +E + + FD IILDL L + G Sbjct: 7 RILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 67 VCRAVR-ETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+ ++ G L +++ V V+ I LT E++++ L+ T+ + + Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + ID + LR KL + ++ TV G GY A Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFEAPA 232 >gi|15889704|ref|NP_355385.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15157614|gb|AAK88170.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 234 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE D E+LETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP--DGAAEFLETA 234 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD A+ + L+ E + V G + + + ++LDL L + G+E Sbjct: 3 RVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKI--PQASLVVLDLMLPRLSGWE 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ E+++RGL GADDY++KPF+ E+VAR+RA++RRS Sbjct: 61 VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSGL 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ G+L + + + G + L+ E+ ++ L+ ++E L ++ Sbjct: 121 KAELAF--GELVIRPREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVWGT 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++DV I LRKKL YIETV G GY +E Sbjct: 179 DFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRFQEE 221 >gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 244 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + L+ E + + + GE+ + L ++D I+LDL L G E Sbjct: 12 KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGIE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K +TPV +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 72 VCKQLR-EKKATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTAN 130 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V GH + LT KEY+++ L+ + +E Sbjct: 131 SPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDREQ 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ I TVWG GY Sbjct: 191 LLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGYKFE 240 >gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G +E D I+LD+ + GF Sbjct: 8 KVLVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAPDGFT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A S + L+ ++ D++ GL +G DDY++KPF+ EE+V R+RAI+RR R Sbjct: 68 VARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRP 127 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL ++ A TV G IHL+ E+ ++ L + ++K L+ Sbjct: 128 AQEQVDDGVLRYADLELDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDR 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D E E +I++ +I LR+K+ A G I T+ G GY L+ Sbjct: 188 VWDYDFEGESRIVESYISYLRRKI--DAEGPPLIHTLRGVGYRLQ 230 >gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] Length = 232 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 236 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G++ +E + FD +ILDL L +PG Sbjct: 7 RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR RA++RR Sbjct: 67 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G+L++++ V V G I LT E++++ LS ++ + + Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + ID + LR K+ + ++ TV G GY + K Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233 >gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] Length = 238 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234 >gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110] gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110] Length = 235 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 10/235 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ I+ L+ E+F G ++L + D I+LDL L + G Sbjct: 1 MKILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117 EV +R +L+ D+V GL +GADDY+ KPF+ ELVAR+RA++R Sbjct: 61 EVCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120 Query: 118 -------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++ + + + KT + LT E+ ++ + Sbjct: 121 SLRHGGTQNNVYETPHFIVDLDKYSAIQKTDNNTEEPLELTTLEFNLLSTFMSYPGRVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ L+ + +++D + +LRKK+ YI+TV G GY + Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHVRRLRKKIEPDTANPTYIKTVVGVGYKFEDEV 235 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 MR IL+ ED++ +A + + L+ E ++V G++ + + + D IILD+ + + Sbjct: 1 MRRISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL G DDYI+KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQVRAQYNM-PIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS G++ ++ D +TV + G I LT KE+ ++ LL+ + Sbjct: 120 RSMKLNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWNDAYFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] Length = 238 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LD+ + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCKGIR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKSPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFE 234 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + + L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 65 CKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGE 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 125 QEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 232 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ I + K E+D ++LD+ L GFE Sbjct: 3 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +++ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 63 VCQAIR-EFSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAK 121 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + GDL ++ D++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 KSKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREEL 181 Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LRFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYFR 231 >gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes Clip81459] gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-064] gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-175] gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816] gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220] Length = 236 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 123 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L] gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L] Length = 230 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228 >gi|186684226|ref|YP_001867422.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466678|gb|ACC82479.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 7/237 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I+ L +N+ V + G+ + L + + D +ILD+ L D+ GF Sbjct: 7 KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALALFEQFNPDLVILDVNLPDVTGFN 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + ++ V +L+ + DK+RG GADDY++KPF EL R+ AI+RR R Sbjct: 67 LCQEMQSRNGVF-VLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V + + LT E+ ++ L+ + + + Sbjct: 126 ITTAEQKRLVFEKLMIDPVRREVALNNQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +D + +++DV I ++RKK+ A I+TV G GY A ++LE Sbjct: 186 WDYEYVGDQRVVDVHIGQIRKKIEIDASQPALIQTVRGVGYKFESPA---HPQHLEA 239 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD L + L E + + + G + + + ++ +ILD+ L + GFE Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ SS DKV GL+ GADDY+SKPF +EL+AR+RA++RRS+ Sbjct: 65 LCRLIRAESSV-PILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQM 123 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L ++ + V G + + KE+ ++ + + ++E L Sbjct: 124 QNSQPEPVSGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I LR+K+ ++ TV G GY E Sbjct: 184 KVWGYDYPGGTRTVDVHISWLRQKIETDPSRPRHLITVRGTGYKFEE 230 >gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ D ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +I+TVWG GY + Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226 >gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 234 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ A+ + LK N+ V D G D ++ + D +I+DL L + G Sbjct: 3 MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R P+ +L+ SS DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122 Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++++ TV+ G + LT E+++++ L N L+++ L Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +I+D+ I LR KL + I+T+ G GY Sbjct: 183 EQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEF 228 >gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] Length = 345 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 5/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD +A + L + V + G + + D ++LDL L + G E Sbjct: 15 HVLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLPGMDGLE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR + + PV +L+ ED+V GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 75 VCRRLR-ERAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRRTGP 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L+V+ A+ G + LT +E+ ++ +E + ++ Sbjct: 134 DAVSAPVRLGRLAVDPAARLATRDGEALSLTLREFDLLAFFLRHPGRAFGREELMREVWG 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 ++ + V I +LR K+ + I TVWG GY A+ E + Sbjct: 194 WEF-GDLSTVTVHIRRLRGKIEDDPAAPRAIRTVWGVGYRFE--AEHEAGREAD 244 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD + I L E F V + G++G ++ +FD +ILD+ L ++ G E Sbjct: 7 KILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +A+R P+ L+ + S E+ GL SGADDY++KPF EL+AR+++++RRSR Sbjct: 67 ICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSRN 126 Query: 122 HAQSLIVTGDLSVNLDA----KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ ++ KTV G +I LT EY+++ +++ L + Sbjct: 127 FNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLEN 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + ++DV++ LRKKL I TV G GYVL+E+ +D Sbjct: 187 VWGVNYDIGTNVVDVYVNYLRKKLEKE-NNDRLIHTVIGMGYVLKEDDED 235 >gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 233 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ + I L E + T G +E + EF +ILD+ L + G+ Sbjct: 5 IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R K +TPV ILS DK+ GL GADDY++KPF EL AR++A +RR Sbjct: 65 EVLQKIR-EKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYL 123 Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I ++ +N+D V+V + + LT KE+++++L TK Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I +LR+K+ +YI+T+WG GY L E Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 237 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ L E + V G++ ++ + + D ++LD+ L G EV Sbjct: 6 ILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKRDGMEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 66 CREVRKKYDF-PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNVP 124 Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ + IV G L++ DA V + I LT +E++++ L+ +T+E Sbjct: 125 AQIEEAQAETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV I +LR+K+ + +I T G GY LR ++ Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPLWIVTRRGVGYYLRNPEQE 237 >gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 236 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G++ +E + FD +ILDL L +PG Sbjct: 7 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 67 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G+L++++ V V G + LT E++++ LS ++ + + Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + ID + LR K+ + ++ TV G GY + K Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFEDPTK 233 >gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 222 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K+LA I+ L+ E + V V GE+G+ + + D IILD+ L + G Sbjct: 1 MRILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPIVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R A + TPV +L+ ++ DKV GL SGADDY++KPF+ EEL+ARIRA++RR Sbjct: 61 TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+I DL +N+ V G +I L+ KEY ++E +++ KN L++ + H+YD Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDVFI +LR K+ G K I TV G GY+L+E Sbjct: 181 ENSDFDSNVIDVFINRLRNKIDREFG-KKLIHTVRGAGYILKE 222 >gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905] gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905] Length = 237 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 121/234 (51%), Gaps = 10/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ L E + V G++ ++ + + D ++LD+ L G EV Sbjct: 5 ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 CREIRKKYDF-PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVA 123 Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L + DA V + I LT +E++++ L +T+E Sbjct: 124 APAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV I +LR+K+ + +I T G GY LR ++ Sbjct: 184 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRNPEQE 237 >gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] Length = 241 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE G++ FD +ILD+ + + G E Sbjct: 15 HILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 75 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 194 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 239 >gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 236 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 9/236 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I+L L+ E F Y G I+ + + D IILDL L + G Sbjct: 1 MDILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R +L+ D+V GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120 Query: 119 SRGHAQS--LIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171 S H+ + T +V++D T Q + LT E+ ++ + + + Sbjct: 121 SLRHSGQSLVYRTQHFTVDVDQHTASRQLESGESEPLDLTTLEFNLLATFTSQPGRVWNR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ L+ + +++D + +LRKK+ +I+TV G GY +N D Sbjct: 181 TQLIDKLWGNDFFGDERVVDTHVARLRKKIEPDPSNPTFIKTVIGVGYKFEDNRVD 236 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 65 CKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGE 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 125 QEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + + + F V G + + + + D +ILD+ + + GFEV Sbjct: 6 VLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVLDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ + +D++ GL+ GADDY++KPFN +E+VAR++AI+RR+ Sbjct: 66 CQQIR-KYSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTAAP 124 Query: 123 AQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +L +N+ TV G + L KE +++ L+ L++E L + Sbjct: 125 QQYTQADILRFPELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLSREQLLELV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + + +D + +LRKKL I+TVWG GY Sbjct: 185 WDYSYCGDTRTVDTHVKRLRKKLGVGPHSPWDIKTVWGIGYKFE 228 >gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae TIGR4] gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54] gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae] gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae] gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54] gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570] gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301] gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317] gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368] gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901] Length = 234 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS+ Sbjct: 63 VAKTIR-KTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV + +LR+K+ + YI T G GY +R NA Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234 >gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 240 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +++ L+ EN+ + D G+D +E ++D I+LDL L G E Sbjct: 8 KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCKGIR-EKKATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 126 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A ++V L+++ DA V V G ++LT KEY+++ L+ + +E Sbjct: 127 TAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDREQ 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D I +LR+KL+ I TVWG GY Sbjct: 187 LLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFE 236 >gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] Length = 230 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F + + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + GDL ++ TV ++ LT KE+++++L +N TK N Sbjct: 123 YSATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWSEEYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKLE 228 >gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] Length = 240 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + D+ V +Q + LT KE++++ L+ + ++ Sbjct: 127 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] Length = 222 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H I L E +NV G+ ++ + +D +I+D+ + G Sbjct: 1 MRILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGVIMDIMIPKKDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I PV L+ S +D VRGL +GA DY++KPF EL+AR+R ++R Sbjct: 61 SVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTVH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++ + V G + LT +EY ++E L KN +T+E +++ Sbjct: 121 ISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D+ ++DV+I LR+K+ + + I T+ G GY L Sbjct: 181 IDDDINSNVVDVYIRYLRRKI-DDPFEEKLIHTIRGVGYRLE 221 >gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD+ + + L L+ + + V + + GE+ + D I+LD+ + + G++ Sbjct: 5 KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMPKLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +++ DKV GL+ G+DDY+ KPF+ +E+VAR++AI+RR+ Sbjct: 65 VCREIR-KKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRASK 123 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + L VN+ ++V G + KE +++ L+ N T++ L+ Sbjct: 124 SSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPNRVYTRDQLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+KL + ++TVWG GY Sbjct: 184 VWGFEYYGDSRTVDVHIKRLREKLEGV-SDQWTLKTVWGVGYKFE 227 >gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ LA IEL LK E + V V G G+ + D I+LD L I G E Sbjct: 4 HILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR P+ +L+ I D+V GL +GADDYI KPF+ EEL+AR+RA +RR++ Sbjct: 64 ICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I+ DL +N + V I LT KE++++E L LT++ L ++ Sbjct: 124 ENPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL G K I+T+ G GYVLR+ Sbjct: 184 DFMGDSNIIEVYVRYLRLKLEEN-GEKRLIQTIRGVGYVLRD 224 >gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium resistens DSM 45100] Length = 224 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 116/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++L+ E F V G + + + + D I+LD+ L + G + Sbjct: 4 KILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVMLPGMNGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ + D GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 64 VCRAIR-EDSTVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKELVARVRARLRRNTD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L++++ V I LT E+ ++ L+ + T+E L ++ Sbjct: 123 EKPEKLEISGLTIDVSGHQVTRGDEVIPLTPIEFDLLLTLASKPRQVFTREELLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ I+TV G GY Sbjct: 183 RKSSDTRLVNVHIQRLRSKIEVDPDDPRIIQTVRGVGYK 221 >gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] Length = 238 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234 >gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D +ILD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRTKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + +N + +TV+V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 232 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 133/228 (58%), Gaps = 9/228 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+K + I+ L+ +++ V V G++ +++ K E+D ++LD+ L ++ G EV Sbjct: 6 LVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMDGMEVC 65 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ + Sbjct: 66 QAIR-EFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKKS 124 Query: 124 QSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S+ + +LD++ V + I+LT KE+ ++ELL+ + ++E L+ Sbjct: 125 KSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLLSI 184 Query: 178 LYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +V+ +DV + +LR+K+ YI T WG GY +E Sbjct: 185 VWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 232 >gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 241 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D++ + +++ L+ EN+ + G + +E ++D I+LDL L G Sbjct: 8 IRILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 EVCKEIRAQ-KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 126 Query: 121 GHAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + + L+++ DA V V G + LT KEY+++ L+ + +E Sbjct: 127 NAAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDRE 186 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D I +LR+KL+ A I TVWG GY Sbjct: 187 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + +++ L+ E + VY + G +E+ + + D +ILD+ L + GFE Sbjct: 9 RILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL L + P ILS DKV G GADDY+ KPF EL+ R+RAI+RR+ Sbjct: 69 VLAQL-QSTGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTAG 127 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ +N ++TV V+G + LT KE+ ++ LL+ ++E L Sbjct: 128 AGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSREALLQ 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +LR+K+ G I+T+WG GY Sbjct: 188 RVWHSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGYKF 232 >gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] Length = 241 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE G++ FD +ILD+ + + G E Sbjct: 15 HILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ ELVAR++A +RRS Sbjct: 75 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTK 133 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 194 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 239 >gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 274 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++ +A + L F V + G +EL + D +ILD L + G E Sbjct: 33 RILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDGVE 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR +S PV +++ + + +D++ GL+ GADDY++KPF+ ELV R+++++RRS Sbjct: 93 VCRRLR-QTMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRRSIK 151 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ ++TV G + LT +E+ ++ + R N ++E + ++ Sbjct: 152 EFAPEPPVEAAGLELDPASRTVTHGGVPLALTVREFDLLAFMMRRPNQVFSREELIKAVW 211 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + +LR+K+ ++TVWG GY Sbjct: 212 GWDF-GDLSTVTVHVRRLREKIEANPTKPELLKTVWGVGYRF 252 >gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 237 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD +A I+ L++E F+ G +E + + D I+LDL L + G Sbjct: 1 MKILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R +L+ D+V GL +GADDY+ KPF+ ELVARIRA++RR Sbjct: 61 EVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRR 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171 G + T +V+LD Q + L+ E+ ++ L + Sbjct: 121 SLRHGGQSQVYRTPHFTVDLDQHLAYRQLDPQTSEPLDLSPLEFNLLVTLVSYPGRVWNR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ + +++D I +LRKK+ +I+TV G GY ++ Sbjct: 181 TQLIDKLWGDDFFGDERVVDTHIARLRKKIEPDPTHPQFIKTVVGTGYKFEDS 233 >gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 232 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQVRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 304 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F+ V G + + + + D I+LDL L + G + Sbjct: 82 KILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMNGID 141 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+ + D V GL+SGADDY++KPF +ELVAR+RA +RRS Sbjct: 142 ICKTIR-RSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 200 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +L++++ + TV + LT E+ ++ L + T+E L ++ Sbjct: 201 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWGY 260 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + TV G GY Sbjct: 261 KHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 299 >gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D +ILD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRTKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + +N + +TV+V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC 14580] gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580] gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2] gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC 14580] gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580] gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2] Length = 242 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 9/238 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ A+ ++ +L E F V E+ +++ K I+LD+ + GF+ Sbjct: 6 ILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ L+ +S DK+ G GADDYI+KPFN EL+ARI+A ++R+ Sbjct: 66 VSPEIR-RHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYI 124 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + + D + V G + + + Q+++ N L+K+ Sbjct: 125 HKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 ++ + + V I KLR+K+ YI T+ G GY N + E Sbjct: 185 YEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNPARKESEG 242 >gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 254 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDIP 58 R+L++EDD ++ ++ L++E F V+ G + L D I+LDL L + Sbjct: 26 RLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGLG 85 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R LR +TP+ ++S S D+V GL+ GADDY+ KPF ELVAR RA++RR Sbjct: 86 GLDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 145 Query: 119 SRGHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S S + V G + L+ KEY+++EL +++ Sbjct: 146 SSQSETSPSQPHSFTHANLCLFPSECRVTRDGTDLTLSPKEYKILELFIQNPKRVWSRDQ 205 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+K+ I TV G GY Sbjct: 206 LLEKIWGVDFIGDTKTVDVHIRWLREKVEQEPSSPQLIRTVRGFGYRF 253 >gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098] Length = 226 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGYKFEP 226 >gi|228984288|ref|ZP_04144469.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775405|gb|EEM23790.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 234 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +R+ Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRKHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHASSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|307944614|ref|ZP_07659954.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4] gi|307772363|gb|EFO31584.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4] Length = 230 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 174/230 (75%), Positives = 199/230 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG + IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL++AA GKNYIETVWGRGYVLRE ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLASAASGKNYIETVWGRGYVLREPEVEQAA 230 >gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ +A + L+ E + V+ G G++ + D ++LDL L DI G Sbjct: 1 MNILVIEDEERVADIMTKYLEKEGYKVFTCYTGRSGLDCFYKNKIDIVLLDLMLPDIQGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 E+ +R I + +++ K+ G GAD+Y+ KP + E+VAR++A + Sbjct: 61 EICAEMRQVSNVHIFMI-TAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQ 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + G + L + V++ I LT E+ ++ L+ +++ + Sbjct: 120 REENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEA 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + IDV I LRKK+ YI+TV G GY Sbjct: 180 VMGIDFDGFDRTIDVHIKNLRKKIETDTKNPRYIKTVTGVGYKFE 224 >gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 229 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + I + L +E + V GE+ + K +D I+LD+ + + G Sbjct: 5 RVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + D++ GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 65 VCQEIR-KVSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRVGT 123 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++L ++ V V+ I LT KE++++ LL+ + ++E L + Sbjct: 124 EEKKEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +V+ +D + +LR KL A G N+I+TVWG GY A Sbjct: 184 WGFDYYGDVRTVDTHVNRLRDKLRAAGAG-NFIKTVWGVGYKFEVEA 229 >gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 241 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 124/231 (53%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D++ + +++ L+ EN+ + G + +E ++D I+LDL L G Sbjct: 8 IRILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 EVCKEIR-EQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 126 Query: 121 GHAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + + L+++ DA V V G + LT KEY+++ L+ + +E Sbjct: 127 NAAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDRE 186 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D I +LR+KL+ A I TVWG GY Sbjct: 187 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 238 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++DD + ++L L+ E F V GE ++ K D I+D+ + + Sbjct: 1 MKKTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+++++ +R + P+ ILS + DK+ GL GADD+I KPF+ E++AR++A +RR Sbjct: 61 GYQLIKKVR-ETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRR 119 Query: 119 SRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S ++ I G+L ++ + + I L+ EY+++ L TK Sbjct: 120 SYEFNKNTLESTVNQIHIGNLILDHHSCMLYKYNKSITLSAIEYKLLTLFMEDPGRIFTK 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + I V I +LR+KL ++ YI+T+ G GY Sbjct: 180 KQIFERVWSDHYYSDDNAIMVHISRLREKLEDSPRNPVYIKTIRGLGYRF 229 >gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 246 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 125/231 (54%), Gaps = 2/231 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + + L+ E F V G ++ D +ILD+ L DI GFE Sbjct: 7 RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + TPV L+ + EDKVRGL G DDY++KPF+ ELVAR+ AI+RR+RG Sbjct: 67 VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S +V DL ++ D V G I LT EY+++ L LT+ L+H++D Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWDY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + +++ +I LRKK+ A G I TV G GY LR ++E + Sbjct: 187 DFGGDSGVLETYISYLRKKI--DAEGPPLIHTVRGVGYTLRLPRENEKSKT 235 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR I TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 65 CKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGE 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 125 QEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 234 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I L+ ENF+ + G +E+ + D IILDL L + G Sbjct: 1 MNILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D++ GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170 G Q + T +V+LD Q + LT E+ ++ + Sbjct: 121 SLRHGGQVQQIYRTSHFTVDLDQHIATRQLDNEDSEILDLTTLEFNLLSTFMSYPGRVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ L+ + +++D I +LRKK+ ++I+TV G GY ++ Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHIRRLRKKVEPDPANPSFIKTVIGVGYKFEDD 234 >gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F + G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + S PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRELR-QRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGD 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 SSGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGYKFEP 229 >gi|217958697|ref|YP_002337245.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137906|ref|ZP_04266505.1| Response regulator [Bacillus cereus BDRD-ST26] gi|217067863|gb|ACJ82113.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228645563|gb|EEL01796.1| Response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRKKTDC-PIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAQSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 413 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 124/228 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ +AH++ L +++ V V G+ G E + + +D I+LD+ L + G Sbjct: 1 MKVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR +TP+ +L+ S K+ GL +GADDY+ KPF+ EL ARIRAI+RR Sbjct: 61 SLCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ TG L +N + V ++LT KEY ++EL ++ L+HL+ Sbjct: 121 AALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + P + I LR KL A + +ETV+G GY L+ + E Sbjct: 181 FEEPPAEDTVRAHIKGLRSKLKAAGAPPDLVETVYGLGYRLKPEKRQE 228 >gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 14 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A GDLS+NL + V G + LT E+ ++E+ LT+E Sbjct: 134 AAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246 >gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 224 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 122/222 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ L+ +++ V + GE G + + + + I+LD+ L + G Sbjct: 1 MRILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + TPV +L+ + DKV GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ LS++ + V +HLT KEY ++ELL ++ L L+ Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P + + V I LRKKL A + I+TV+G GY L+ Sbjct: 181 WDDPPGEEAVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRLK 222 >gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 234 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L + + V ++ G D +++ K I+LDL L + GF+ Sbjct: 5 KILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLMLPGLDGFD 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + ++ + + +L+ DK+ GL+ GADDYI+KPF+ EL+AR++A++RR+ Sbjct: 65 VCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L ++ D V + ++ LT KE+ ++++L K L +E L+ Sbjct: 125 YPGADIENNSYESKGLKIDFDRHEVFINNQKVELTLKEFDLLKILIKNKGKILQRETLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +DV I LRKK+ +IET+ G GY Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFNP 231 >gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum V4] Length = 223 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A I L+ E F V G++ + + +DA +LD+ L G Sbjct: 1 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR+LR IS P+ +LS S DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ Sbjct: 61 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ G+L++NL + V +I LT KE+ ++ELL T+ +++ Sbjct: 121 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P ++DV+I KLRKK+ + + I+TV G GY + Sbjct: 181 YHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIE 221 >gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 126/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G E Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 63 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ + GDL + ++ V + + LT KE++++ L+ + ++ Sbjct: 123 KAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233 >gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 244 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + ++ D ++LD+ + + G Sbjct: 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GDL +NL + V G + LT E+ ++E+ LT+E Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240 >gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516] gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516] Length = 233 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+ED+ + ++ L E F + + GE G+EL + + D +LD+ L I GF Sbjct: 7 IKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGIDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + +L+ + DK+ GL+ GADDY++KPFN EL+ RI++++RRS Sbjct: 67 EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 126 Query: 121 GHAQSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D + ++ ++T G I LT E +I+LL +T++ ++ Sbjct: 127 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKA 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV + +LR K+ + YI TVWG GY Sbjct: 187 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 230 >gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 232 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D +ILD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRTKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + +N + +TV+V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032] gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ EN+ + + G++ I+ ++D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RRS Sbjct: 68 VCNQIR-DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + ++ D ++LD+ + + G Sbjct: 34 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 93 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 94 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 153 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GDL +NL + V G + LT E+ ++E+ LT+E Sbjct: 154 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 213 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 214 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 260 >gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] Length = 241 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G E Sbjct: 15 HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 75 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 134 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 194 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 239 >gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] Length = 231 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ ++ +E L E F V G + E + EFD ++LDL + + G Sbjct: 1 MRILLVEDDREISEMLEEFLIQEAFEVVPAFDGLEACEKFEDGEFDLVLLDLMIPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ +R K P+ I+S S+ DK GL+ GADDYI+KPF E++ARI+A +RR+ Sbjct: 61 DVMKTIR-EKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTN 119 Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + + GD+ +N TV +G +I LT KE++++ LL TK Sbjct: 120 QYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTK 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +++ + ++V I +LR K+ + A YI TVWG GY + Sbjct: 180 EQIYSLVWEDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGYRI 229 >gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 217 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 8/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I+ L E ++V G +E+ + +D +ILD+ L + G+ Sbjct: 3 KILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLPKMDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ S D++ G + AD+YI+KPFN LVARI+AI RR Sbjct: 63 VCREIRRE-SMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRR--A 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GD+ ++ ++ VE++G + LT KE++M+ + L++E LN ++ Sbjct: 120 GKPDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWGW 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +V+ +D + +LRKK+ YI+T+ G GY E Sbjct: 180 DYFGDVRTVDTHVKRLRKKIGEI-----YIQTIRGFGYRFEE 216 >gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+KA+ I+ L+ ++ V GE+ +EL K EFD I+LDL L I G Sbjct: 10 RVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKIDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ DK+ GL+ GADDYI+KPFN E+ AR++AI+RR+ Sbjct: 70 VCRQIR-EFSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSF 128 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I+ GDL ++ D + + + ++LT KE+ ++ELL + N ++ LN Sbjct: 129 NLKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLN 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I +LR+K+ + Y+ T WG GY Sbjct: 189 IVWGYEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ AL +++ L+ E + V + G +E+ + ++ ++LD+ + + G Sbjct: 8 RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A PV +L+ ++ D+V GL +GADDY+ KPF +EL+AR+RA++RRS Sbjct: 68 ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + GDL ++ ++ V G + LT EY ++ELL + LT+E Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ EP +DV++ LR+K + AAG I TV G GYVLR Sbjct: 188 LSEVWGFDFEPSSNSLDVYVMYLRRK-TEAAGRSRLIHTVRGVGYVLR 234 >gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRGKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G ++++ + +TV V G I LT KE+ ++ +L+ + Sbjct: 120 RFLTLNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str. CNEVA-9066] gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055] gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str. Western North America USA6153] gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger B] gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str. Vollum] gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str. Australia 94] gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 250 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 18 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 78 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 136 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 137 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 196 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 197 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 246 >gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L] gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1] gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI] gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L] gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1] gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 238 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234 >gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] Length = 240 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ EN+ + + G++ I+ ++D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RRS Sbjct: 68 VCNQIR-DKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 228 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ D ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +I+TVWG GY + Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226 >gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] Length = 238 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LD+ + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCKGIR-EKKATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFE 234 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + L + FN + G++ + L + + + I+LD+ L DI GFE Sbjct: 4 KILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + + + +++ DK+RGL+ GADDYI KPFN EL+ARI+A I R ++ Sbjct: 64 ICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTNK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V G L ++ + + V G + LT +E+ ++++ N LT++ LN ++ Sbjct: 124 PDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR+K+ + YIETVWG+GY+ R+ Sbjct: 184 EDYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGYLFRK 226 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE 231 >gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W] gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W] gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G ++++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L+ NF V G+ ++L + ++LD+ L D+ GFE Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ ILS DK+ GL+ GADDYI KPFN EL ARIR+++RR+ Sbjct: 65 ICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTSR 124 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G + + + + G + LT +E+Q+++ ++N +T++ L+ Sbjct: 125 NTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLDE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + K +DV I +LR+K+ + +++TVWG GY +E+ Sbjct: 185 VWGLNYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCFQESG 232 >gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 225 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +A + L+SE F V G G ++ +DAI LD+ L G+ Sbjct: 1 MRVLIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIILPGKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR + ++TP+ +L+ D+ +GADD++ KPF+ L+AR+RA+VRR Sbjct: 61 TVCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DL ++ K V G I LT +E+ ++ELL + L K++ L ++ Sbjct: 121 VAKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++V+I LR+K+ +A K I TV G GY + ++ + Sbjct: 181 YAILADENVVEVYISYLRRKV-DAPFDKKLIRTVRGVGYCIDKDPE 225 >gi|56696561|ref|YP_166918.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] gi|56678298|gb|AAV94964.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] Length = 238 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 158/227 (69%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDINLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG+ E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVEGQPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQAD 227 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A ++L L E + + + G DG+ E+D ++LD+ L ++ G E Sbjct: 3 KILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ S+IEDKV GL GA+DYI+KPF +EL+ARIR +R S Sbjct: 63 VLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFSHK 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + N + V +I LT +E+ ++ ++E LN Sbjct: 123 SAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + ++DV++ LR+KL + TV G GYVL+E + + Sbjct: 183 AVWGYDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVLKEASNE 233 >gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 247 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 24/248 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D+ A+ S+E L+ E + V G + ++ D ++LD+ + + G Sbjct: 1 MRVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR PV +L+ + D+V GL GADDY+ KPF EEL AR+RA+ RR+ Sbjct: 61 EACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALTRRAS 120 Query: 121 GH-----------------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157 ++ D+ ++ ++ V + LT E+ + Sbjct: 121 LSARAASAAAVAAGGSADSAGPGPGRPQVLTFSDVRLDPGSRQVTRGDRELTLTKTEFDL 180 Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 +EL + L++ + ++ P ++VF+ LR+KL A G + TV G Sbjct: 181 LELFLAHQRQVLSRSTIMERVWGYDFGPSSNSLEVFVSYLRRKLE-AGGEPRLLHTVRGV 239 Query: 218 GYVLRENA 225 GYVLRE A Sbjct: 240 GYVLRETA 247 >gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E ++D I+LD+ + G E Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G+DDYI KPF+ E+V R++A++RRS Sbjct: 75 VCKGIR-EKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 134 TTFFTQDTITKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL +A I TVWG GY Sbjct: 194 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFE 243 >gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum SW] gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum SW] Length = 234 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 151/231 (65%), Positives = 192/231 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ++A SIELML SE + V T+LGEDG+E+ K Y++D IILDL L DI G+ Sbjct: 1 MRVLLVEDDPSMAKSIELMLNSEGYIVDSTELGEDGLEIGKLYDYDIIILDLMLPDIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+++TP+ ILSG+S ++ K++GL GADDY++KPF+K ELVAR++AIVRRS+ Sbjct: 61 EVLRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S+I TG L+VNLDA+TVEV G +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVF+CKLRKKL+ A G+NYIETVWGRGYVLR+ + + + Sbjct: 181 GMDEPELKIIDVFVCKLRKKLTTATKGENYIETVWGRGYVLRDPTEVQKPQ 231 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ +A ++L L+ E + + G DG+ + ++D I+LD+ L ++ G + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + TPV +L+ S +EDKV+GL GA+DY++KPF EEL+ARIR +R S+ Sbjct: 64 VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQK 123 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS+N + V G I LT +EY ++ L LT+E L ++ Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I +R+KL A I+TV G GYVL+EN Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLEIANVTP-IIQTVRGVGYVLKEN 227 >gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 230 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G D +E + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LRV PV +++ S DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLRVRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGE 121 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G + +++D V V G ++ L KE+ ++E+L LT+ Sbjct: 122 DGGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 IDRVWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 230 >gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + +N + +TV+V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ L + LK E ++V + G DG+E K +D IILD+ L +I G Sbjct: 1 MRILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR I+TP+ +L+ +++DKV+GL +GADDY++KPF EL ARIRA++RR + Sbjct: 61 QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL VN V G I LT KEY ++E + LT+ ++H++ Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV+I LRKK+ + I+T+ G GY L+E Sbjct: 181 YEFDGLSNIIDVYIRYLRKKIDDNFDI-KLIQTIRGSGYCLKE 222 >gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++A I L+ ENF V + G +G+ K +FD +ILD+ L I GF Sbjct: 4 KILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQIDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L + PV ++S DK++GL GADDYI+KPF+ ELVAR+++ ++ Sbjct: 64 ILH-SIQEEKDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122 Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +N D + V V G ++L KE++++ L+ N +KE Sbjct: 123 IKGKFVKPPKNNIIIRGLEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKEDL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ ++ YIETVWG GY LR Sbjct: 183 FEKIWGLDAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRLR 230 >gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 226 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G++ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L G + ++++ V V G + L KE+ ++E L LT+ ++ + Sbjct: 122 AEDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR KL Y+ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGYKFE 225 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 9/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E F V GE+G+ D +ILDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 63 VCREIR-KTSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQL 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + IV G L+++ DA V +G I LT +E++++ L+ +T+E Sbjct: 122 APAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +V+ +DV + +LR+K+ + +I T G GY ++ +++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIKTPDQEKEA 238 >gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 235 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 12/231 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--------FDAIILDLGL 54 ILL+ED++ + +I L+SE + V G+ +++ + ++ D IILD+ L Sbjct: 4 ILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIML 63 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R +R + PV +LS + D+V GL+ GADDY++KPF EL+AR RA Sbjct: 64 PGINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCRA 123 Query: 115 IVRRSRGHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++RR R + ++S++ D V V+ ++L+ KE++++EL Sbjct: 124 LLRRQRLNNTDPQGTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVWP 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L ++ + K +DV I LR+K+ +Y+ T+ G GY Sbjct: 184 REQILEKIWGPDYIGDSKTVDVHIRWLREKIELDPSNPDYLVTIRGFGYRF 234 >gi|325293784|ref|YP_004279648.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3] gi|325061637|gb|ADY65328.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3] Length = 234 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE D E+LETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP--DGATEFLETA 234 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 133/225 (59%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ + I L+ E + V G++ + + ++DA ILD+ + G+ Sbjct: 1 MRILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR TPV L+ SI D+V GL GADDY+ KPF+ +EL+ARIR + R+ Sbjct: 61 EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S+I GDL ++ + +V I L+ +EY ++E L+L + L++E NH+++ Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DV+I LRKK+ ++ GK I TVWG G++L+E+A Sbjct: 181 FDYSGGTNVVDVYISYLRKKI-DSGEGKKLIRTVWGTGWMLKEDA 224 >gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 133/224 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A+++ LK + V + GE G + + + +D IILD+ L + G Sbjct: 1 MRILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TPV +L+ + DKV+GL +GADDY+ KPF+ EL ARIRA++RRS Sbjct: 61 ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N ++ V GH +HLT KEY+++EL + L++ L+HL+ Sbjct: 121 TTLPPVLEWENLRLNPNSCEVNYAGHPLHLTPKEYKLLELFLRNTHLVLSRSQILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +LRKKL + IETV+G GY L+++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLKAVGASPDLIETVYGLGYRLKQS 224 >gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +++ + ML++E F V V D G +E + D ++LDL L +PG E Sbjct: 3 RVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQIRAKSNV-PVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAA 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V G + L KE++++E+L LT+ ++ + Sbjct: 122 SDEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGTPVHLVTVRGLGYKFE 225 >gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 232 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + +N + +TV+V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+K + I+ L+ + + V G + +++ K E+D ++LD+ L ++ G EV Sbjct: 5 LVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMDGMEVC 64 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121 +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 65 QAIR-EFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKKA 123 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I DL ++LD++ V + ++LT KE+ ++ELL+ + ++E L+ Sbjct: 124 KAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLLSI 183 Query: 178 LYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +V+ +DV + +LR+K+ YI T WG GY +E Sbjct: 184 VWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 231 >gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 238 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L E + V V GE+ ++ K + D IILDL L + G E Sbjct: 4 KILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-KTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I GDL ++ +A +V +G I LT +E++++ L+ +T+E Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++ +V+ +DV + +LR+K+ ++ ++ T G GY LR D+ Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQA 238 >gi|302382325|ref|YP_003818148.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192953|gb|ADL00525.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 165/236 (69%), Positives = 196/236 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDMIMLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV KI+TPV ILSG + IE KV+ GADDY++KPF+K+EL+AR A+VRRS+ Sbjct: 61 EVLRQLRVGKINTPVMILSGSTEIETKVKTFGGGADDYMTKPFHKDELIARTHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I TG+++VNLD KTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQAIIHTGEIAVNLDGKTVEVHGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ ++ + A Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPSESTMPSPVSAA 236 >gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 231 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + + + + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE 231 >gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37] gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37] Length = 238 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 157/231 (67%), Positives = 187/231 (80%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TD+GE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLSHANLNVYSTDMGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVA+I TP+ IL+G + K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRVARIDTPILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDET 229 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR E ++DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDDNYIETVWGRGYVLRDPEPSQDEA 231 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ + H + + L+ E + V G + +E + ++ +I+DL + +I G++V Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 R +R + P+ +L+ D+V G + GADDY+ KPF+ +ELVAR++A R + Sbjct: 64 CRDVR-ERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGN 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++ G L + D V + +I T +E++++ L+ + ++E + ++ Sbjct: 123 TAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +D + K+R+KL ++ + TVWG GY A +E Sbjct: 183 GYDFYGDARTVDTHVKKIREKL-ADPKVRSMLATVWGVGYKFDPEAANE 230 >gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 232 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A + L E + V V GE+ L + D ++LD+ L GF Sbjct: 5 KILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIMLPKKDGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ + D V GL+ GADDY++KPF+ E++AR++A +RR++ Sbjct: 65 VCRDIR-RVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQA 123 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL V+ + G I LT +EY ++ L +++E L+ + Sbjct: 124 AKGPGGEFLICDDLQVDTGRMEIRKNGVDIDLTYREYLLLVYLMRNAGYVISREKLLSEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I +LR+K+ YI T G GY +R Sbjct: 184 WGYDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGYFIR 227 >gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ LK E ++ GE+ + L D I+LD+ L + GF Sbjct: 4 KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R LR ISTP+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +R Sbjct: 64 VCRKLR-QSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLIP 122 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + GDL++++D ++ I LT +E+++++ L+ ++ T ++E Sbjct: 123 GEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ +V+ +DV + ++R+KL YI T G GY + Sbjct: 183 LEKVWGYEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGYYFNK 231 >gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus] gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis serovar chinensis CT-43] Length = 238 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234 >gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621] gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621] Length = 242 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ + + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ GD+ +N+ + V + + LT +E++++ELL+ + L E Sbjct: 134 SGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIYE 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+K+ YI+T+WG GY + ++ Sbjct: 194 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241 >gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + ++ D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR + + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRSLR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGD 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + +++D V V+G ++ L KE++++E+L LT+ ++ + Sbjct: 122 VEELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + K +DV + +LR K+ + I TV G GY + A+D Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGYKF-DPAED 229 >gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 232 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I++ + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 221 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD A+ + + L+ E V G + ++L + D +ILDL L + G++ Sbjct: 3 RVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLL--PQADVVILDLMLPQLTGWQ 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ ++++GL+ GADDY++KPF+ E+VAR+RA++RRS Sbjct: 61 VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRSGF 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDL + + +G ++L+ E+ ++ L+ ++E L ++ Sbjct: 121 KQELVF--GDLILRPRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVWGS 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++DV + LRKKL A YIETV G GY R Sbjct: 179 DFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRFR 219 >gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 277 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A + L + V + G ++ + D ++LDL L + G E Sbjct: 21 RILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLPGMDGLE 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR PV +L+ +D++ GL+ GADDY++KPF+ ELV R++++ R Sbjct: 81 VCRRLR-ENGPVPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRARP 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + L ++ A+ G + LT +E+ ++ L +E + ++ Sbjct: 140 GPGIRPLHAAGLVLDPAARRATKNGAELALTLREFDLLAFLLAHPRKVFGREELMREVWG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V + +LR K+ + I+TVWG GY Sbjct: 200 WDF-GDLSTVTVHVRRLRGKVEDDPARPLLIQTVWGVGYRFEP 241 >gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 123/224 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+ +A + L ++ V V GE EL YE+D I+LD+ L I G Sbjct: 1 MKILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RR Sbjct: 61 SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+LS+N + V Q + L+ KEY+++E + + L+HL+ Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 PE + I LR+K+ G + IETV+G GY L+E Sbjct: 181 LEQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRLKEQ 224 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G ++++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|291563400|emb|CBL42216.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 230 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++A+ ++ L E V G + +EL K +F +ILD+ + + G++ Sbjct: 5 KILLVDDERAIRLAVRTALTREGMQVTEAADGSEALELLKKQQFHLVILDVMMEHVGGYD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+A+R A TPV +LSG S D+V GL GAD Y++KPF+ L+ +A++RRS+ Sbjct: 65 VLQAMRAAGDHTPVMMLSGKSDEMDQVLGLGFGADSYLTKPFHTAILIQTAKALIRRSQI 124 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++Q + I G +V+ G ++ T +E + L TKE Sbjct: 125 YSQGAAGDAGIRKGPFTVDTLKMECLKNGEPLNFTAREMTLFRFLMEHPGQVFTKEQLYT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + I V++ ++R K+ + Y++TV G GY+L Sbjct: 185 QVWN-EAVVDDNTITVYVKRIRNKIEDDPKQPRYLKTVRGIGYML 228 >gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 235 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ + Y D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I G+L + +A VE G +I LT +E++++ L+ +T+E Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + + T G GY ++ + + Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVKNPSDE 235 >gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 235 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ + + L L+ F V + G + +E + D ++LD+ L I G+ Sbjct: 1 MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR P+ +L+ + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ Sbjct: 61 AVCRILRRESDV-PLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L +++ A+ G R++LT KE+ ++ LL+ L + + Sbjct: 120 RVEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +V+ +D + LR KL A ++ IETV GY L Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLNPQ 226 >gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium resistens DSM 45100] Length = 231 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ +DD+A+ S+ L + V + G + +E+ D ILD+ + G Sbjct: 1 MKILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +L+ ++ ++V GL +GADDY+ KPF EEL+AR R++ RR Sbjct: 61 EVCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRAT 120 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + DL++N + + V +I LT E+ ++ELL L++ Sbjct: 121 RPAINEAQSHEPLRFEDLTLNPETREVRRDERQISLTRTEFALLELLIRNPRKVLSRNNI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LRKK G I TV G GYVLRE A Sbjct: 181 LEEVWGYDFPTSGNALEVYIGYLRKKTEQD-GESRLIHTVRGVGYVLRETAP 231 >gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD ++ +E L E F + + GE+G+ FD IILD+ + + G E Sbjct: 4 HILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS Sbjct: 64 VVRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I GDL ++L TV+ + ++ LT KE+++++L +N TK N Sbjct: 123 YSATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKLE 228 >gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V V G +G++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 235 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DDK + + L L+ + ++V + G+D + K D ++LD+ L G++ Sbjct: 8 KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLPGKDGWQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ +++ DKV GL+ GADDYI KPF+ +E++ARI A+ RR Sbjct: 68 VCREIR-KISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGT 126 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q + LSVN+D+ ++V G I KE +++ L+ N T++ L+ Sbjct: 127 GISEPEQKEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDE 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + + IDV I +LR+KL K ++TVWG GY + ++ Sbjct: 187 VWGFEYYGDSRTIDVHIKRLREKLEGI-SDKWSLKTVWGVGYKFEADEEE 235 >gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 233 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 12/232 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ +L+ +D+ +A IEL L E + G++ +++ + D ILD+ + I Sbjct: 1 MKPITVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMPKI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R K P+ LS ++ DK+ GL GADDY++KPFN ELVAR+ A +R Sbjct: 61 DGYEVTRQIR-EKHHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R S+ G L ++ + +TV + G + LT KE+ ++ LL+ Sbjct: 120 RFIQLNPSVAGPTDEPVLEAGGLVIHPEHRTVFLYGEPVELTPKEFDILVLLANHPKKVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++ + V I LRKKL I+TVWG GY Sbjct: 180 SSEHIFEKVWGEAYYEGGNTVMVHIRSLRKKLGEDRHKNKLIKTVWGVGYTF 231 >gi|222094843|ref|YP_002528903.1| response regulator [Bacillus cereus Q1] gi|221238901|gb|ACM11611.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRKKTDC-PIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+A+ ++ L + V + + G + +E D ILD+ + + G Sbjct: 1 MKILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V R LR PV +L+ S+ ++V GL +GADDY+ KPF EEL+AR+R+++RR Sbjct: 61 DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + DLS++ + + V RI LT E+ ++ELL L++ L Sbjct: 121 LEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRTAIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V+I LR+K + A G I TV G GYV+RE A Sbjct: 181 EDVWGYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVMRETAP 230 >gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 222 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ LA+ I+ L E + + V GE+ K+ +D IILD+ L G Sbjct: 1 MKILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R I+TP+ +L+ S+ D+V+GL SGADDY+ KPF+ +EL AR+R+++RR Sbjct: 61 TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL++N + V + ++ LT KEY ++E +T+ + ++D Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +IDV+I +LRKK+ + +ETV G GY L Sbjct: 181 IDFEGNSNVIDVYIRRLRKKIGD--KEGKILETVRGAGYRL 219 >gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 236 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G++ +E + FD +ILDL L +PG Sbjct: 7 RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR RA++RR Sbjct: 67 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G+L++++ V V I LT E++++ LS ++ + + Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + ID + LR K+ + ++ TV G GY + K Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ + + L L+ F V + G + +E + D ++LD+ L I G+ Sbjct: 1 MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR PV +L+ + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ Sbjct: 61 AVCRILRRESDV-PVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L +++ A+ G R++LT KE+ ++ LL+ L + + Sbjct: 120 KVEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +V+ +D + LR KL A ++ IETV GY L + Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLNPH 226 >gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + + L+ + V GE+ I L K E+D ++LD+ L G+EV Sbjct: 4 VLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDGYEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 CQAIR-EFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122 Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + GDL ++ D++ V + I+LT KE+ ++ELL+ ++E L Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ D +V+ +DV + +LR+K+ + Y+ T WG GY Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +++ L+ E+++V + GE +++ E+D I+LDL + I G E Sbjct: 6 KILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPGIDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCEEIR-KHKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA + G I+LT KEY+++ L+ + +E Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D I +LR+KL+ N I TVWG GY Sbjct: 185 LLKDVWNYEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGYKFE 234 >gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] Length = 240 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 4/233 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ IE + ++FD ++LDL L IPG Sbjct: 7 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ IED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRTIR-DTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GDL +++ + V+G + LT E++++ L+ + + + Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E + ID + LR KL + ++ TV G GY AK + + Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAKTDKSD 238 >gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51] gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 229 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I+L++D++++ ++E +++ + D G + +E+ D +ILD+ L + GF Sbjct: 1 MKIMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +R + P+ LS I DK G + G DDY+ KPF+ EL RI+A++RR Sbjct: 61 AVCEKIR-SFSDVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPH 119 Query: 121 GHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GDL + L+ V G ++ LT KE++++ L+ + T+E Sbjct: 120 RLEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ E + + VFI ++R+K+ YI TVWG GY + Sbjct: 180 LDRIWGLDFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKFK 227 >gi|260427756|ref|ZP_05781735.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45] gi|260422248|gb|EEX15499.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45] Length = 238 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 157/236 (66%), Positives = 190/236 (80%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L + Y++D I+LDL L DI G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLARLYDYDLILLDLNLPDINGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I+TP+ ILSG E+K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRINTPILILSGADDTENKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKLS A G +NYIETVWGRGYVLR+ E ++A Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDENYIETVWGRGYVLRDP---EPGRDQQSA 233 >gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 246 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E +N+ G +G+E+ + E ++LD+ + I G + Sbjct: 19 ILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGIHM 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS + DK+ GL +GADDY++KPFN ELVAR+++ +RR Sbjct: 79 CMKVR-EQKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMKM 137 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I GD+ +N+ V V + LT +E+ ++ELL + E Sbjct: 138 SGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIYE 197 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K+ A YI+TVWG GY + ++ Sbjct: 198 KVWNERSFQSDNTVMVHIRKIREKVEENARKPRYIKTVWGVGYKVEKD 245 >gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] Length = 238 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234 >gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 228 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K LA +I+ L+ E F V + G +G++L Y +D IILD+ L + G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 EVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R LR + P+ +L+ + S+E++V GL GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q + GDL +NL + V +G ++L+ KE+ ++EL ++E L+ L+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + EP I+DV++ LRKKL + IETV GY L++ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEK-IETVHNIGYRLKKE 224 >gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 226 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + S PV +L+ + DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 63 VCRQLR-QRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + ++++ V V G ++ L KE++++E+L LT+ ++ + Sbjct: 122 PEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFEP 226 >gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 238 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 126/232 (54%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ ENF + D GE +E+ E+D I+LDL + + G + Sbjct: 6 RILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPKLDGMQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR +TP+ +L+ ++V G + GADDYI KPF+ E+V R++AI+RR+ Sbjct: 66 VCEELR-KTKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V V+ ++LT KEY+++ L+ + + ++E Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224 L +++ +++ +D + +LR+KL+ + I TVWG GY N Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENN 236 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD+ + ++ L E + V GE G++L + + D IILD L + G E Sbjct: 4 RILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + P+ +L+ +++D+V+GL +GADDY++KPF EEL+ARIRA++RR++ Sbjct: 64 VCQRLRT-LCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL+++ + I LT KEY ++EL LT+EM + ++ Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LR+KL + G + TV G GYVLRE Sbjct: 183 DFGGESNVLDVYIRYLRQKLESD-GEPRLLHTVRGVGYVLRE 223 >gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD A+ + L E F V + G +E D +ILDL L + G+ Sbjct: 3 RVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQA--PGADLVILDLMLPGMDGWR 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ E++VRG + GADDY++KPF+ E+VAR+RA++RR Sbjct: 61 VAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRVGL 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G L + A+ V ++G + L+ E+ ++ L+ T+E L ++ Sbjct: 121 KDELVY--GPLVIRPRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGP 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++DV + LRKKL + A +IETV G GY RE+ Sbjct: 179 GFEGVDRVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRFRES 221 >gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 265 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 126/236 (53%), Gaps = 11/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ + Y+ D +ILDL L G E Sbjct: 31 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKDGLE 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 91 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 149 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 150 VKKAEAATQEEADKNIKIGNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTR 209 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 210 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILITRRGVGYYVKQPTEE 265 >gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 231 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + +I+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQHIQTIRGVGYKFTSNE 231 >gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 4/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I L +N+ V GE ++L + D +ILD+ L D GF Sbjct: 5 KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ V +L+ ++ DK++G GADDYI+KPF EL AR+RA R Sbjct: 65 LCQEMQSRTRVF-VLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ + V ++ +I L+ E+ ++ L+ + + L + Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +D E E +++DV I ++RKK+ I+T+ G GY+ +E Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGSEEP 234 >gi|229195420|ref|ZP_04322188.1| Response regulator [Bacillus cereus m1293] gi|228587960|gb|EEK46010.1| Response regulator [Bacillus cereus m1293] Length = 234 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAQSSSFGRFKIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 1/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L+ S++ L +E ++V G++G +L + +D IILD+ L G Sbjct: 1 MRILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR ++ TP+ +L+ SI+D+VRGL GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + G L ++ TVE +G I LT +EY ++E +T++M H+++ Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E +IDV++ +LR+K+ +A + T+ G GY L + + Sbjct: 181 YDFECSSNVIDVYVRRLRRKI-DAPFTTKLLATIRGVGYCLSSPGSKQEAQ 230 >gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 251 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + + G++ I +D I+LDL + G E Sbjct: 19 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 79 VCRQIR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 137 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 138 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 197 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 198 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 251 >gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G ++++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + + I + L++E + + + ++L + EFD IILD+ + ++ G E Sbjct: 5 ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMDGIEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR + + Sbjct: 65 CMKIREERNL-PIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKKY 123 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I GDL+VN D + V V+G + LT KE+ ++ELLS K ++ E Sbjct: 124 NTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 184 AVWKEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGYKI 228 >gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] Length = 238 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G++ +E ++D I+LD+ + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R K +TP+ +L+ ++V+G + G+DDYI KPF+ E+V R++A++RR Sbjct: 66 VCKGIR-EKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +IV L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL ++ I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSSDAAKMIVTVWGVGYKFE 234 >gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 804 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 127/221 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ LA I+ LKS+++ V + G+ G+E + +E+D I+LDL L + G Sbjct: 1 MKLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R TP+ +++ KVR L +GADDY+ KPFN +EL+AR+RA++RR Sbjct: 61 QFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G L +N + V QG +HLT KEY ++EL +N ++ + HL+ Sbjct: 121 LSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + P + I LR+KL A N IETV+G GY L Sbjct: 181 FDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRL 221 Score = 72.3 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 2/182 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD L L+ F + + + E + D +ILD+ + +I G + Sbjct: 509 KLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISGID 568 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R PV LS +S + G Q+GADDYI KP +LV+RI + R Sbjct: 569 LCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRILNRLERE 628 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R Q V V K+++ +HL ++ Q + L H Sbjct: 629 RQRRQLADVDSLTGVASRRKSIQEITRMLHLAQRQKQPCCFIILNIENLSQINELYGHAV 688 Query: 180 DG 181 Sbjct: 689 GD 690 >gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I L L+ E + V G + ++ K ++LD+ L I G++ Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ DKV GL+ GADDY+ KPF +ELVAR++A++RR Sbjct: 66 VCREIR-KVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEH 124 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L +N T+ ++G+ I L KE +++ L+ N T+E L H++ Sbjct: 125 KEVDTLEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLEHVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + ++R+K+ G ++TVWG GY Sbjct: 185 GFDFYGDSRTVDVHVKRVREKIDLD-GQPWQLKTVWGVGYKFE 226 >gi|15966471|ref|NP_386824.1| response regulator,controls chromosomal replication initiation protein [Sinorhizobium meliloti 1021] gi|307300492|ref|ZP_07580272.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307318357|ref|ZP_07597792.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|9858148|gb|AAG01017.1|AF288464_1 response regulator CtrA [Sinorhizobium meliloti] gi|15075742|emb|CAC47297.1| Cell cycle transcriptional regulator CtrA, autoregulated, response regulator [Sinorhizobium meliloti 1021] gi|306896039|gb|EFN26790.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306904658|gb|EFN35242.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 233 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE E +YLETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---EGSDYLETA 233 >gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 235 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ + Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I G+L + +A VE G +I LT +E++++ L+ +T+E Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + + T G GY ++ + + Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVKNPSDE 235 >gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 148/224 (66%), Positives = 181/224 (80%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A IE MLK+E V T LGEDG+E+ K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLVVEDDRMMAQVIETMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR ++I TPV ILSG++ + K++GL GADDY++KPF+K ELVARI+AIVRRS+ Sbjct: 61 EVLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG LSVNLD +TV+V G +HLT KEY ++ELLSLRK TLTKE FLNHLY Sbjct: 121 GHAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ Sbjct: 181 GIDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDP 224 >gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 227 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+ED++++ +++ L+ E + ++ GE+GIE+ + D ++LD+ L I GFE Sbjct: 4 KVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR S + +L+ + DK+ GLQ G DDY++KPFN EL RI++I RR Sbjct: 64 VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +LI ++ ++ + LT EYQ+I++ +T+ L + Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +YIETVWG GY + Sbjct: 184 WGDDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGYRWK 227 >gi|222086833|ref|YP_002545367.1| two-component response regulator protein controls chromosomal replication initiation [Agrobacterium radiobacter K84] gi|221724281|gb|ACM27437.1| two-component response regulator protein controls chromosomal replication initiation [Agrobacterium radiobacter K84] Length = 233 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 174/231 (75%), Positives = 202/231 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE +E E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREPDNNELAE 231 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD + + L E ++V V + G + + D ++LD+ + D+ G E Sbjct: 4 RVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A + P+ +L+ ++ D+V+GL GADDY+ KPF EEL+AR+RA+ RR Sbjct: 64 VCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGAP 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ DL ++ + +I LT KEY+++ L LT++ + Sbjct: 124 AQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLMEK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E +++V++ LR KL A G I+TV G GYVL+E Sbjct: 184 VWGYDYSGESNVLEVYVAYLRNKLE-AGGEPRLIQTVRGVGYVLKE 228 >gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] Length = 237 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I L++E + + GE +++ + + D +ILDL L + G E Sbjct: 6 KILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPKMDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R PV +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 66 VCREIRKQSAV-PVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ IV GDL ++ DA + G I LT +E++++ L+ +T+E Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++D +V+ +DV I +LR+K+ + YI T G GY+L+ ++ Sbjct: 185 LETVWDYDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLLKNPDQE 237 >gi|229095705|ref|ZP_04226685.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228687738|gb|EEL41636.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 234 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232 >gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 224 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED ++LAH+I L+ ++ +T G++G+ +D IILD+ L I G Sbjct: 1 MRILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R+ I TPV L+ SIED+V GL +GADDY+ KPF+ +EL+ARIRA++RR Sbjct: 61 NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL ++ ++ V G I LT KEY ++E L+ K LT+ H+++ Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LR+K+ + + I T+ G GY+LR+ Sbjct: 181 YDFEGTSNIVDVYIRYLRRKI-DDGFPEKLIYTIRGVGYMLRDE 223 >gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] Length = 230 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD+A+ ++ L E FNV GE+ + C FD +ILD+ + + G E Sbjct: 4 HILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLNGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + + P+ I+S S DK GL GADDYI+KPF+ E AR++A++RR+ Sbjct: 64 VLKIIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +L +++ ++ G I LT KE+ +++L + TKE Sbjct: 123 YSSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + II+V I +LR+K+ + YI+T+WG GY Sbjct: 183 QMIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 229 >gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 232 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ LK E ++V GE+ + + K D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKYHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G +E D ++LDL L + G E Sbjct: 3 RVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLR-QKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L G + ++++ V V+G + L KE++++E+L LT+ ++ + Sbjct: 122 DEVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G YI TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGYKFEP 226 >gi|222149588|ref|YP_002550545.1| two component response regulator [Agrobacterium vitis S4] gi|221736570|gb|ACM37533.1| two component response regulator [Agrobacterium vitis S4] Length = 233 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 177/236 (75%), Positives = 207/236 (87%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIITGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE ++ EY+ETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DSAEYMETA 233 >gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] Length = 250 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 4/233 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ +E + ++FD I+LDL L + G Sbjct: 18 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 78 VCRAIR-DTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GDL +++ + V+G + LT E++++ L+ + + + Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E + ID + LR KL + ++ TV G GY A+ + + Sbjct: 197 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQSDKAD 249 >gi|209886225|ref|YP_002290082.1| cell cycle transcriptional regulator CtrA [Oligotropha carboxidovorans OM5] gi|209874421|gb|ACI94217.1| cell cycle transcriptional regulator CtrA [Oligotropha carboxidovorans OM5] Length = 233 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 171/229 (74%), Positives = 201/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSEDEA 229 >gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G ++++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +++ ++ L+ + V V G+ EL FDAI+LDL L + G Sbjct: 3 KILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R KISTPV +++ D+V GL+ GADDYI+KPF+ E++AR++A++RRS+ Sbjct: 63 VLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 T +L ++ + K V + LT +EY+++ S R + +E L Sbjct: 123 DHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +++D+ I LR+K+ ++TV G GY Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGY 225 >gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + + L L+ E ++V T G D I+ + ++ D ++LD+ L + G++ Sbjct: 5 KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R K PV +++ DKV GL+ GADDYI KPF+ +E+VARI+A++RR Sbjct: 65 VCREIR-KKSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSG 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L VNL + V G + KE +++ L+ N T++ L+ + Sbjct: 124 AENDTVKEVRYDNLVVNLTNYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I +LR+KL + ++TVWG GY Sbjct: 184 WGFEYYGDSRTVDVHIKRLREKLEGK-SDQWSLKTVWGVGYKFE 226 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR+ Sbjct: 69 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAN 128 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ DL ++ + V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 129 GDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ I T+ G GYVLR+ A Sbjct: 189 NYDFRGDDNIVESYISYLRRKV--DNTQPRLIHTLRGVGYVLRKPA 232 >gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD ++A + L E +N+ GE+G+ + + +D +++DL + + G E Sbjct: 4 HILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ I+S S DK GL GADDY++KPF+ E+ ARI++ +RRS Sbjct: 64 VIRQIRTRSAV-PILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A+ G+L ++ D TV G+ I LT KE +++L + N TK Sbjct: 123 YARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTK 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+V I +LR+K+ +I+T+WG GY Sbjct: 183 AQLYGFIWKDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGYKWE 233 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V G+D ++ DA++LDL + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRAV 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S DL+++ + V I LT E+ ++E+L LT+ L Sbjct: 121 PDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 225 >gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 238 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +++ L+ E + + GE+ + L E+D I+LDL + + G E Sbjct: 6 KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR +TPV +L+ D+V+G + GADDYI KPF+ E+V R++A++RRS Sbjct: 66 VCTELR-KTKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 IV L+++ DA V V G I LT KEY+++ L+ + + ++E Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L +++ +++ +D + +LR+KL+ + I TVWG GY ++ Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGYKFEAASE 238 >gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 233 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 6 ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ GD+ +N+ + V + + LT +E++++ELL+ + L E Sbjct: 125 SGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 65 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 124 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 125 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 244 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 296 >gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis 2.10] gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis 2.10] gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 239 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 160/228 (70%), Positives = 187/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228 >gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLTD 56 R+L++EDDK++ ++ L +E + V V G++ + D I+LDL L + Sbjct: 14 RLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLPN 73 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G E+ R +R I TP+ I+S S D+V GL+ GADDY+ KPF EL+AR RAI+ Sbjct: 74 LNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAIL 133 Query: 117 RRSRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RRS + + ++S+ V I+L KEY+++EL + Sbjct: 134 RRSETNHEKTQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVWS 193 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L ++ + K +DV I +R+K+ + A +YI TV G GY Sbjct: 194 RDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244 >gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 230 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+++ + L+ F+V + G +G++ + E+D +ILD+ L + G+E Sbjct: 3 KILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R K PV I+S DK+ GL+ GADDYI+KPF+ ELVAR+ A + + Sbjct: 63 ILKKIRDEKDI-PVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121 Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + D++ V V G ++L KE+ ++ L+ N ++E Sbjct: 122 LRNKYGNNNVNSITIRGLEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREEI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + V I ++R+K+ + YIETVWG GY LR Sbjct: 182 FDRVWGMDALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRLR 229 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 65 CKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGE 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 125 QEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|301052758|ref|YP_003790969.1| response regulator [Bacillus anthracis CI] gi|300374927|gb|ADK03831.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 234 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QAVSNEQKAHSSSFGRFEIDRYSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + L ++ I+LD+ L I G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR +TPV +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RR Sbjct: 67 VCSRLR-QVKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + IV L + DA V G + LT KEY+++ L++ + ++E Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ + I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKLE 235 >gi|254466033|ref|ZP_05079444.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] gi|206686941|gb|EDZ47423.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] Length = 239 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 159/227 (70%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG ++K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMSRIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVE G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKISVNLDAKTVEADGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ +D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQED 227 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDD +A I L L E + + G + + L + D +ILD+ + + G+EV Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R + P+ LS +S DK+ GL GADDY++KPFN EL+AR+ A +RR R Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + IV G L+++ + + V + RI LT KE+ ++ LL+ + E Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 174 FLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + V I LRKKL + +I+TVWG GY + Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >gi|49477096|ref|YP_035355.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196037687|ref|ZP_03104998.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218902316|ref|YP_002450150.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228926259|ref|ZP_04089333.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120744|ref|ZP_04249987.1| Two-component response regulator [Bacillus cereus 95/8201] gi|254725504|ref|ZP_05187286.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|49328652|gb|AAT59298.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196031929|gb|EDX70525.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218536850|gb|ACK89248.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228662749|gb|EEL18346.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833356|gb|EEM78919.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 234 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+A IE LK + F V + GE +E K FD IILD+ + I GF Sbjct: 4 KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKIDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR P+ +L+ DK+ GL+ GADDY+ KPF+ EL AR++AI+RR Sbjct: 64 VLRELR-KTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ GDL ++L ++ +G I LT +EY++++ L+ ++E L Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D +++ +DV + +LR+K+ + YI T G GY Sbjct: 183 DQVWDYEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGYYF 228 >gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTTGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 10/230 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 MR IL+ +D++ +A I + L+ E ++V G++ + + + D ++LD+ + + Sbjct: 1 MRDISILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R + + P+ LS +S DKV+GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRRIR-EQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q G L + D +TV + G I LT KE+ ++ LL+ Sbjct: 120 RFMKLNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDILYLLASHPKKVFNV 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL +I+TVWG GY Sbjct: 180 ENIFQQVWGEAYFEGGNTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYTF 229 >gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 241 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ EN+ + G + +E ++D I+LDL L G E Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 69 VCKEIRAQ-KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + + L+++ DA V V G + LT KEY+++ L+ + +E Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D I +LR+KL+ A I TVWG GY Sbjct: 188 LLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 241 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++ + +++ L+ EN+ + G +E ++D I+LDL L G Sbjct: 8 IHILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLMLPGKDGI 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 EVCKEIR-EHKTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 126 Query: 121 GHAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + L+++ DA V V G + LT KEY+++ L+ + +E Sbjct: 127 NATYAPVETTTKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDRE 186 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D I +LR+KL+ A I TVWG GY ++ Sbjct: 187 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFEAVSE 241 >gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 239 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD ALA + ++L E ++V G + + D ++LD+ L G Sbjct: 15 HVLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGMS 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL++GADDY+ KPF +EL+AR RA +RR Sbjct: 75 VCREIRAESGV-PIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTP 133 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q+ + GDL++++ + V+ QG I LT E+ ++ L+ + L++E L ++ Sbjct: 134 PQQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWGY 193 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + ++TV G GY Sbjct: 194 QHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGYR 232 >gi|116253499|ref|YP_769337.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|209550655|ref|YP_002282572.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241206026|ref|YP_002977122.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115258147|emb|CAK09248.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|209536411|gb|ACI56346.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859916|gb|ACS57583.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 233 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE + EY ETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DGAEYAETA 233 >gi|324325234|gb|ADY20494.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 234 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHASSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] Length = 224 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 93/225 (41%), Positives = 138/225 (61%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L + I LK NF+V GE+ +E ++ +D I+LD+ L + G+ Sbjct: 1 MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ SI+DK++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL +++ KTV G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRAGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DVGNSKPLIHTKRGLGYVLKEDE 224 >gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 239 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K ++ + LK + + V + + GEDG +D I+LD+ L G Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR + + PV +++ +++++ GL GADDY++KPF +EL+ARI+A+ RRS Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S++ GDL VNL + V G + LT +E+ ++E L LT+ L H++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV + +LRKK+ +A + IETV G GY +R+ Sbjct: 197 YDFDPSTNVVDVCVQRLRKKV-DAGHDVHLIETVRGAGYRMRKE 239 >gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603] gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603] Length = 242 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ + + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ GD+ +N+ + V + + LT +E++++ELL+ + L E Sbjct: 134 SGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIYE 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+K+ YI+T+WG GY + ++ Sbjct: 194 RVWKEKAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241 >gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 236 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 4/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I L +N+ V GE ++L + D +ILD+ L D GF Sbjct: 5 KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNLPDTTGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ V +L+ ++ DK++G GADDYI+KPF EL AR+RA R Sbjct: 65 LCQEMQSRTRVF-VLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ + V ++ +I L+ E+ ++ L+ + + L + Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +D E E +++DV I ++RKK+ I+T+ G GY+ +E Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGSEEP 234 >gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51] gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+K +++ ++ L+ E F+V G + L K +D ++LDL L + G Sbjct: 1 MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLPGLSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R +TPV +L+ +ED+++GL GADDYI KPF+ E+VARI+A++RR+ Sbjct: 61 EICREIR-KISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTH 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ L+++ V +Q I LT E++++ L+ ++ + Sbjct: 120 IETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQ 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ID I KLR+KL I TV+G GY + ++ Sbjct: 180 IVQGHDFGGDERVIDAHIKKLRQKLERVPSDPKIILTVYGVGYKFNAHKEE 230 >gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 223 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + + L+ F V V + GE+G++L E+D IILD+ L + G+ Sbjct: 1 MRILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R K TPV L+ +++D+++GL+ GADDY+ KPF EL+ARIR I+RR Sbjct: 61 QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI DL ++L V G R+ LT KE+ ++ LL+ R LT+ ++D Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ++DV + +LR K+ + I TV G GYVL E Sbjct: 181 IDFESDTNVVDVHMRRLRAKV-DDPFEHKLIHTVRGVGYVLEE 222 >gi|206976559|ref|ZP_03237465.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206745242|gb|EDZ56643.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRKKTDC-PIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 229 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++D+K ++ ++ L E + VY GE+ +E E D ++LDL L + G EV Sbjct: 1 MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---- 119 R +R + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 61 REIR-KTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASSV 119 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 QS + GDL+++ DA V G I LT +E++++ L+ +T+E L Sbjct: 120 KEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQT 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR ++ Sbjct: 180 VWGYDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYLRNPEQE 229 >gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 232 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DDK + + L L+ E ++V ++ GE+ + + D ++LD+ L + G++ Sbjct: 5 KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDYI KPF+ +E++ARI+A+VRR+ Sbjct: 65 VCREIRKKSNI-PILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQ 123 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LSVN+ ++V G + KE +++ L+ N T++ L+ Sbjct: 124 SPAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + + IDV I +LR+KL K ++TVWG GY + +D Sbjct: 184 VWGFEYYGDSRTIDVHIKRLREKLEGV-SDKWELKTVWGVGYKFETDEED 232 >gi|118476709|ref|YP_893860.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044305|ref|ZP_03111541.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|229183424|ref|ZP_04310649.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|118415934|gb|ABK84353.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196024944|gb|EDX63615.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|228600008|gb|EEK57603.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ ++ DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTADLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074] gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074] Length = 223 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKYHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFFTLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ + ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +I+TVWG GY + Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226 >gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 224 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +L I LK E ++V + G D +E E+D +I+D+ + ++ G Sbjct: 1 MKILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ LR ++ PV L+ + EDKV+GL +G DDY+ KPF EL+AR+RA++RRS Sbjct: 61 TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + DL ++ A TV G I LT KE+ ++E L + L+++ L H Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D E ++DV+I LRKK+ + + TV G GYVL+E Sbjct: 181 WDFSYEGASNMVDVYIKTLRKKIDHDF-EPKLLHTVRGAGYVLKE 224 >gi|150397803|ref|YP_001328270.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029318|gb|ABR61435.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 233 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 178/236 (75%), Positives = 204/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE E YLETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---EGSAYLETA 233 >gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 244 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + + D ++LD+ + + G Sbjct: 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL +NL + V G + LT E+ ++E+ LT+E Sbjct: 134 AVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240 >gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 232 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L+ E + V GE+ + + + D +ILD+ + + G E Sbjct: 5 ILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLDGLEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + ++ A P+ ILS + DK+ G + G DDY +KPF+ EL R++A++RR Sbjct: 65 CQKIKGAADV-PIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKGV 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R Q ++ + + L + V + I LT KE+ ++ L++ N ++ L Sbjct: 124 TDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKEFDLLWLMASHPNQVFSRLQLLEQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ R E + + V I +LR+K+ I+TVWG GY + Sbjct: 184 IWESRYEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGYKFEAPKQ 232 >gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 133/230 (57%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ + + L++ + V ++ G++G++ + D +ILDL L D+ G E Sbjct: 4 RVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVDGLE 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + L+ + P+ +L+ S DKV GL+ GADDYI+KPF+ EL+ARI+A++RR+ Sbjct: 64 ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123 Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GD+ ++ V +G + LT KE+++++LLS LT++ L+ Sbjct: 124 QQPEEEKEEIIRFGDIVIDTGKHLVYKKGKVLDLTLKEFELLKLLSQNMGKVLTRDYLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + +DV I LRKK+ + YIETV G GY L++ + Sbjct: 184 KVWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLKDKGE 233 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+EDD+ +A + L L+ E + + G + + L + +DA+ILDL L + G Sbjct: 1 MKQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R +R PV I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR Sbjct: 61 LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120 Query: 120 RGHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + + A+TV + G + LT +E++++ + ++ L Sbjct: 121 QAMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++ I +LR K+ A + TVWG+GY E Sbjct: 181 EQVWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAE 228 >gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6] gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 20 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS+ Sbjct: 80 VAKTIR-KTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 138 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 139 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 198 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV + +LR+K+ + YI T G GY +R NA Sbjct: 199 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 251 >gi|229101805|ref|ZP_04232520.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681598|gb|EEL35760.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + +D IILD+ L + GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPEQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232 >gi|225863073|ref|YP_002748451.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225785922|gb|ACO26139.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEKKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|229154782|ref|ZP_04282897.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628730|gb|EEK85442.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L E F ++ G++ +++ + + D +I+D+ + ++ G+E Sbjct: 3 RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ KV+G + GADDY+ KPF+ ELVAR++A+++R R Sbjct: 63 LCRELR-DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G LS+N + I L KE++++ L+ T T++ + ++ Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + +DV I +LR++ + I T+ G GY L + Sbjct: 182 DYDGDERTVDVHIKRLRERFAQ-PDSPFSIRTIRGLGYRLEAQS 224 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G + +E+ DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DL+++ + V +I LT E+ ++E+L LT+ L Sbjct: 121 PDDEDAESVAMKFSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSRILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 EVWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 226 >gi|229171861|ref|ZP_04299431.1| Two-component response regulator [Bacillus cereus MM3] gi|228611633|gb|EEK68885.1| Two-component response regulator [Bacillus cereus MM3] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTAQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QTTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHIK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QAVPHEQKANFSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ LK+ + ++ G + + + K + + I+LDL + + GF+ Sbjct: 5 KILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGMDGFD 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V + ++ +T + +L+ DK+ GL+ GADDYI+KPF+ EL+AR++A++RR Sbjct: 65 VCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L V+ + V++QG+++ LT KE++++++L K L +EM L+ Sbjct: 125 ASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +DV I LRKK+ +IET+ G GY Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFNP 231 >gi|47567578|ref|ZP_00238289.1| response regulator DrrA [Bacillus cereus G9241] gi|47555773|gb|EAL14113.1| response regulator DrrA [Bacillus cereus G9241] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G ++++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] Length = 271 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ F G + + D +ILD+ + + G Sbjct: 47 KILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDGMT 106 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR---AIVRR 118 LR +R KI TPV +L+ S DK+ GL+ GADDY+ KPF+ ELVAR++ A Sbjct: 107 CLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTMP 166 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +QS V GDLS++ + TV+V G LT KE+ ++ L K L++E L + Sbjct: 167 RTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQKV 226 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +D I LR L +NYI TVWG GY + Sbjct: 227 WNYDYYGEDRTVDTHIKMLRGHLGP---CRNYIVTVWGIGYKFDPD 269 >gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + I L ++ E F V G +E+ + + +ILD+ L G++ Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + PV +LS DKV GL+ GADDY+ KPF +ELVAR++A++RR Sbjct: 66 VCREIR-KISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEH 124 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L +N T++V G + KE +++ L+ N T+E + ++ Sbjct: 125 KDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL + +TVWG GY Sbjct: 185 GYDFYGDSRTVDVHIKRLREKLDSEGQNWQL-KTVWGVGYKFE 226 >gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] Length = 219 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + I+ L E + V GE+GIE +D +ILD+ + I G+ Sbjct: 3 KILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIMMPKIDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R P+ +L+ + D++ G D+Y+ KPFN + LVA+++A+ R + Sbjct: 63 VCRKIREESQV-PIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +V GDL+++ + V ++ + LT KEY ++ K L++E LN ++ Sbjct: 122 IIDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +D I +LRKK+ + Y++TV G GY E Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGD-----KYVQTVRGFGYKFEE 219 >gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 233 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V + G +G+ + + E ++LD+ + I G + Sbjct: 6 ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKIR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++ +N+ V V+ + LT +E+ ++ELL+ + E Sbjct: 125 NGFVVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232 >gi|229090161|ref|ZP_04221411.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693238|gb|EEL46949.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVIPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EQVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] Length = 239 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G+D ++ + FD ++LDL L +PG Sbjct: 8 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPGER 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 68 VCRVIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G+L++++ V V + LT E++++ LS ++ + + Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + ID + LR K+ + ++ TV G GY + K Sbjct: 187 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 234 >gi|254476592|ref|ZP_05089978.1| two component transcriptional regulator, winged helix family [Ruegeria sp. R11] gi|214030835|gb|EEB71670.1| two component transcriptional regulator, winged helix family [Ruegeria sp. R11] Length = 239 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 161/228 (70%), Positives = 189/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+ D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRDPQDDQ 228 >gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + ++ ML+ E F V V + G D ++ D ++LDL L + G E Sbjct: 3 RVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A S PV +++ DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQIR-ATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTE 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G + ++++ V V G+ L KE++++E+ LT+ ++ ++ Sbjct: 122 PDAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K +DV + +LR KL ++ TV G GY L Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKL 223 >gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 233 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA I LK E F V V GE+G+ + +FD +ILD+ L G+ Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+A+R I+TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR++A++RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ + V G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + I LRKK+ + K I TV G GYV+R+ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKI-DRGFKKKIIHTVRGIGYVVRDE 233 >gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + + L+ E +++ + GE ++L ++D I+LD+ L + G EV Sbjct: 7 ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLPGMDGTEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR +TPV +L+ ++V G + GADDY+ KPF+ E++ R++AI+RR Sbjct: 67 CARLR-QFKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSSAT 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + IV L + DA V G + LT KEY+++ L++ + ++E Sbjct: 126 AFLSKDSNSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVFSREEL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ I TVWG GY L Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAVMITTVWGVGYKLE 234 >gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 119/234 (50%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + + G++ I +D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQIR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT K Y+++ L+ + +E Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + + G++ I +D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQIR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 243 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 RIL+++D++A+ ++ L+ + E+ + + E D IILD L D+ G Sbjct: 3 RILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMSGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR I+ P+ L+ + ++V L+ GADDYI+KPF EL ARIRA++RR + Sbjct: 63 DICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRYQ 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G + ++L TV V G + LT KE+Q++ L+ + +T++ Sbjct: 123 LSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+H++ + + +++DV I LR K+ I+TV G GY L Sbjct: 183 LDHIWGFKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229 >gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1] gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1] gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] Length = 238 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ +++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEE 238 >gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV+V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 238 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +++ L+ EN+ + D G+D + ++D I+LDL L G E Sbjct: 6 KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPGRDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCKEIR-EKKATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAAN 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++V L+++ DA V V G ++LT KEY+++ L+ + +E Sbjct: 125 TMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D I +LR+KL+ I TVWG GY Sbjct: 185 LLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFE 234 >gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 231 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 63 VCRQLRARSSA-PVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + ++++ V V G ++ L KE++++E+L LT+ ++ + Sbjct: 122 PEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFEPRV 228 >gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 225 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + +++ L++ F+ + G+ +++ + DA+++D+ + + GF + Sbjct: 8 VLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDGFSL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ L+ DKV+GL+ G DDYI KPF+ EL+ARI A++RR+ Sbjct: 68 CERIRWQSDV-PILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRAYHA 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L+++ + V V G + LT KE+ ++ L+ + ++E L ++ Sbjct: 127 GNHDLSFGPLTIDERGRKVTVDGEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVWGYD 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 V+ +D I LR KL A+ +I TVWG GY Sbjct: 187 YTGNVRTVDTHIKTLRMKLKQAS---EFIHTVWGIGYKFE 223 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G + +++ DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DLS++ + V RI LT E+ ++E+L LT+ L Sbjct: 121 PDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 225 >gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L] gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 235 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E +++ G + +E + + +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 AMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ TV G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|52144209|ref|YP_082619.1| response regulator [Bacillus cereus E33L] gi|196036495|ref|ZP_03103891.1| DNA-binding response regulator [Bacillus cereus W] gi|228944829|ref|ZP_04107192.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977678|gb|AAU19228.1| response regulator [Bacillus cereus E33L] gi|195990969|gb|EDX54941.1| DNA-binding response regulator [Bacillus cereus W] gi|228814857|gb|EEM61115.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGCVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|228990198|ref|ZP_04150168.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769561|gb|EEM18154.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 234 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +LL++D+ A+ + +L+ E F ++ E+ ++ + +D +ILD+ L GF+ Sbjct: 6 VLLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ SS DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G V+ A ++V G + + + +Q++ N +KE Sbjct: 125 QTTQPMKETHFLSFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPQYIKTVRGLGYKF 231 >gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 277 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 44 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 103 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 104 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + +++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 164 LARDSRIDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLL 223 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 224 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 277 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G + +++ DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL+++ + V RI LT E+ ++E+L LT+ L Sbjct: 121 PEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 225 >gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease [Bacillus anthracis CI] gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease protein [Bacillus cereus biovar anthracis str. CI] Length = 841 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 680 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++ +++R + Sbjct: 681 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKRYQIT 739 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 740 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 799 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 800 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 838 >gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 228 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I L L+ E + V G + ++ K ++LD+ L I G++ Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ DKV GL+ GADDY+ KPF +ELVAR++A++RR Sbjct: 66 VCREIR-KVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEY 124 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +N T+ ++G+ I L KE +++ L+ N T+E L ++ Sbjct: 125 KEVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + ++R+K+ + G ++TVWG GY Sbjct: 185 GFDFYGDSRTVDVHVKRVREKI-DLEGQPWQLKTVWGVGYKFE 226 >gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 241 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 4/236 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ E + V G+ +E + + FD I+LDL L + G Sbjct: 7 RILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R S P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 67 VCRAVR-ETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+ + GDL +++ V V+G + LT E++++ L+ T+ + + Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 E + ID + LR KL + ++ TV G GY K + Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFESAQKGAAPAGEK 241 >gi|228913796|ref|ZP_04077421.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932498|ref|ZP_04095379.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827188|gb|EEM72941.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845735|gb|EEM90761.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 239 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++ED+K + + L+ + V + GE E+ + + D +LD+ L + GFE+ Sbjct: 9 IYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGVDGFEI 68 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + ++ P+ +L+ + D+V GL+ GADDYISKPF+ E VAR++ RR Sbjct: 69 CKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFRRQA 128 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G ++++ + + V I +T KE+++++LL + + L+++M L Sbjct: 129 DSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDMLLQK 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E + +DV I LR+K+ + YIETV G GY + E Sbjct: 189 IWGFDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRGIGYRFSDKEVRE 239 >gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 237 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++D+ A+ + LK + V + GE+ + D ++LD+ L + G Sbjct: 3 HVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLPGMDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R+ R I PV L+ D+V GL G DDY++KPF ELV+R++A++RR Sbjct: 63 LCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRRAAA 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +G A I GD+ + VEV G + LT +E+ ++ +++ + T++ L Sbjct: 123 SSRRQGGASHEIRVGDVVIWPQEYRVEVAGKPVQLTAREFTLLTVMASKPGRVWTRDELL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + +I+DV + LR K+ YI TV G GY Sbjct: 183 DRVWGYTYAGDTRIVDVIVSHLRDKIEENPRKPRYITTVRGVGY 226 >gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] Length = 243 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 11 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 71 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 129 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 130 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 190 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 239 >gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 238 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L E + V+V GE+ ++ + D IILDL L I G E Sbjct: 4 KILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-KTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I GDL ++ +A +V +G I LT +E++++ L+ +T+E Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ +V+ +DV + +LR+K+ ++ ++ T G GY LR D+ Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQ 237 >gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L + + V + G D ++L K ++LDL + + G++ Sbjct: 5 KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYD 64 Query: 62 VLRALRVAKISTPV--CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V +A+R + + +L+ DK+ GL+ GADDY++KPF+ EL+ARI+A++RR+ Sbjct: 65 VCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRRT 124 Query: 120 RGHAQSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S + + N + + V + +I LT KE++++E+L + LT+E L+ Sbjct: 125 KSLGGSEEIFKTNGILINFERREVLISDKKIDLTLKEFELLEILVKNRGKILTRETLLDK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ +IET+ G GY N Sbjct: 185 IWGYEYVGETRTVDVHIRYLRKKIEVDDKNPKFIETIRGVGYRFNPN 231 >gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 235 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E +++ G + +E + + +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 SMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ TV G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 241 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 128/236 (54%), Gaps = 6/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + + L+ E + V G G+ + +DA++LDL L + G E Sbjct: 6 RVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G+L V+ A+ V+V+G + LT +E+ ++ + ++ L Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 N ++ + + ++ I +LR K+ I TVWGRGY L +A +E+ E Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKLAISAMEESGE 241 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + + + D ++LD+ L D+ GFE Sbjct: 12 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR+ Sbjct: 72 VIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTST 131 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ DL ++ + V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 132 GEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ N I T+ G GYVLR+ A Sbjct: 192 NYDFRGDDNIVESYISYLRRKVDNV--EPRLIHTLRGVGYVLRKPA 235 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L E F ++ G++ +++ + + D +I+D+ + ++ G+E Sbjct: 5 RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ KV+G + GADDY+ KPF+ ELVAR++A+++R R Sbjct: 65 LCRELR-DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G LS+N + I L KE++++ L+ T T++ + ++ Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + +DV I +LR++ + I T+ G GY L + Sbjct: 184 DYDGDERTVDVHIKRLRERFAQ-PDSPFSIRTIRGLGYRLEAQS 226 >gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 223 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + I++ L F V G+ G+E + +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKTGLEAAQSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+A R PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 DVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA +I + + + + V + I LT +EY+++EL L K LT++ + LY+ Sbjct: 121 GHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +E ++V I LR+KL K +I TV G GY L +N + E Sbjct: 181 WDNEVSSNALEVHIYNLRQKLG-----KQFIRTVHGVGYALGKNDETE 223 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D++ + ++ L E F + G + L + +D I+LD+ L + G E Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H + L + + V + LT KEY+++ L N TLT+E Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ E +++DV I KLR+K+ + YI+T+ G GY +E D T Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 247 >gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 230 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL+I+D + I L+ + V G +G+ + + D ++LD+ + + Sbjct: 1 MRQTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF L+A R + PV +L+ DKV GL+ GADDY++KPF+ +ELVARIRA++RR Sbjct: 61 GFGFLQAYRREHQA-PVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRR 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + + G+L +N + V V I+LT E+ ++ LL T+E Sbjct: 120 TAAARQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L HL E + IDV I LR+K+ YIETV+G GY Sbjct: 180 LEHLQGNSYEGVERTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYR 225 >gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 242 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ +E + ++FD I+LDL L + G Sbjct: 7 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V RA+R P+ +L+ +ED++ GL+ GADDYI KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRAIR-DTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GDL +++ + V+G+ + LT E++++ L+ + + + Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + ID + LR KL + ++ TV G GY A+ Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQ 233 >gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 239 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 8 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 67 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 68 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 126 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 127 RFLTLNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 186 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E H++ + V I LRKKL I+TVWG GY Sbjct: 187 VENIFQHVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 237 >gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 224 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + ++D IILD+ + + G+ Sbjct: 1 MKILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ I++K++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V++ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DIGDSKPIIHTKRGLGYVLKEDE 224 >gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 290 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD +A + L V G + + D ++LDL L + G E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 78 VCRRMRAR-HPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L+++ A+ G + LT +E+ ++ ++E + ++ Sbjct: 137 DPAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I +LR K+ + I TVWG GY Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRF 236 >gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] Length = 233 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++++ +E+ E + G++G + +D +I+D L + G Sbjct: 1 MKILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWMLPVMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR + Sbjct: 61 TLCRKIR-ELSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRRYQ 119 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + I + ++ D + V +G ++ LT KE+ ++ ++E Sbjct: 120 ADSSKQEEANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++ + + + +DV I +LRKK+ + +I TVWG GY E+ Sbjct: 180 LDRVWGYQFYGDERTVDVHIKRLRKKIG--TTSQPFIHTVWGIGYKFDESE 228 >gi|126726434|ref|ZP_01742275.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2150] gi|126704297|gb|EBA03389.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2150] Length = 237 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 154/236 (65%), Positives = 186/236 (78%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIE+ML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIEMMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+AK+ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLAKVETPILILSGSDDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVE +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIHTGGIAVNLDAKTVEAHNKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ + + L A Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLATDGDNYIETVWGRGYVLRDPVAADGPDVLAQA 236 >gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 240 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 138/234 (58%), Gaps = 5/234 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ + + L++ + V ++ G++G+E + D +ILDL L D+ G E+ Sbjct: 5 VLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMDGLEI 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + + P+ +L+ S DKV GL+ GADDYI+KPF+ EL+ARI+A++RR++ Sbjct: 65 CKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I GD+ ++ V +G + LT KE+++++LLS K LT++ L+ Sbjct: 125 QVEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLKEFELLKLLSQNKGKVLTRDYLLDK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ E + +DV I LRKK+ + YIETV G GY LR+ ++D+ E Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKLRDLSEDKGEE 238 >gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649] gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649] Length = 231 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+KALA +I L +E F V V G G L +D I+LD+ L G+ Sbjct: 1 MRVLLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR K+ P +L+ D+ + GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 DVLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++ + +TV GH I LT KE+ +++ L L+K L++++D Sbjct: 121 PARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++V++ LR+K+ A G + ETV G GY L Sbjct: 181 QAFDGSDNIVEVYVGYLRRKIDQAFGVTSL-ETVRGMGYRL 220 >gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] Length = 229 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DDK + + L L+ E + V + + G++ +EL + + + I+LD+ L + G++ Sbjct: 5 KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ + DKV GL+ GADDYI KPF +E+VARI+A++RR+ Sbjct: 65 VCREIR-KKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + LS+NL ++V G ++ KE ++I L+ N T++ L+ + Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV + +LR+KL K ++TVWG GY Sbjct: 184 WGFDYYGDSRTVDVHVKRLREKLEGV-SDKWALKTVWGVGYKFE 226 >gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407] gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407] gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis serovar chinensis CT-43] Length = 234 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 247 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++ +A + L F V + G + L D ++LD L + G E Sbjct: 17 RILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLPGLDGVE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR +S PV +L+ + + +D++ GL+ GADDYI+KPF+ ELV R+R+++RRS Sbjct: 77 VCRRLR-QTMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRRSVQ 135 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +N A+TV G + LT +E+ ++ R N ++E + ++ Sbjct: 136 EFSPEPAVQVAGFELNPAARTVTHHGSPLALTIREFDLLAFFLRRPNQVFSREELIRAVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + +LR+K+ ++TVWG GY L Sbjct: 196 GWDF-GDLSTVTVHVRRLREKIEADPTRPALLKTVWGVGYRL 236 >gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24] gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24] gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24] Length = 280 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A + L + V G + + + D ++LDL L + G E Sbjct: 54 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 113 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR PV +L+ +D+V GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 114 VCRRLRGQ-GPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 172 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A L+V+ A+ G + LT +E+ ++ +E + ++ Sbjct: 173 APAPRPPSAAGLTVDPAARRATKDGTELALTLREFDLLVFFLRHPGRAFAREELMREVWG 232 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + V + +LR K+ + I+TVWG GY ++ Sbjct: 233 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFDPAGRE 278 >gi|228996291|ref|ZP_04155936.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003958|ref|ZP_04161764.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757327|gb|EEM06566.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763483|gb|EEM12385.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 234 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +LL++D+ A+ + +L+ E F ++ E+ ++ + +D +ILD+ L GF+ Sbjct: 6 VLLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + +R K P+ L+ SS DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I G V+ A ++V G + + + +Q++ N +KE Sbjct: 125 QTTQPMKETHFISFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPEYIKTVRGLGYKF 231 >gi|83591864|ref|YP_425616.1| two component transcriptional regulator / cell cycle transcriptional regulator CtrA [Rhodospirillum rubrum ATCC 11170] gi|83574778|gb|ABC21329.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 142/224 (63%), Positives = 181/224 (80%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD A A SI+L+LK E + V TD GEDG+E+ K Y++D +I+DL L D+ G Sbjct: 1 MRVLVIEDDAATARSIDLVLKKEGWVVDTTDSGEDGLEIGKLYDYDILIVDLMLPDMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR ++I+TPV ILSG++ + KV+GL GADDY++KPF+K EL+AR++AIVRRS Sbjct: 61 EVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLTKPFDKSELIARLQAIVRRSM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS++ G + VNLDA+TV V G +HLTGKEY ++ELL+LRK +TLTKE FLNHLY Sbjct: 121 GHSQSVVTVGQMEVNLDARTVSVAGDPVHLTGKEYGILELLTLRKGSTLTKEQFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAQATGGTNYIETVWGRGYVLRDP 224 >gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08] Length = 227 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S++ +L++ + V G + +E D ++ D+ + + G + Sbjct: 7 VLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDGLGL 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A + P+ +L+ S + D V GL +GADDY+SKPF +EL+AR+RA+ RR+ Sbjct: 67 CRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRTTHL 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 S DL + +A V G I L+ EY ++ +L+ L++ + ++ Sbjct: 127 PASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVWGYA 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P ++V+I LR+KL A G I+TV G GY L Sbjct: 187 MTPASNSLEVYISYLRRKLE-AEGEPRIIQTVRGVGYRL 224 >gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 237 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ L E + V G++ ++ + + D ++LD+ L G EV Sbjct: 5 ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKRDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 CREVRKKYDF-PIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVA 123 Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A G L + DA V + I LT +E++++ L +T+E Sbjct: 124 APVAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV I +LR+K+ + +I T G GY LR ++ Sbjct: 184 LLQTVWGYDYLGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRTPEQE 237 >gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 227 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+I L+++D+K + I L E ++V G + I K +D +ILD+ L + Sbjct: 1 MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYT 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R + P+ +L+ DK+ GL+ GADDYI+KPFN EL ARI+A++RR Sbjct: 61 GLEVCQIVR-EFSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRR 119 Query: 119 SRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ GDL + ++K V + + I+LT KE+ M+EL + + +E L Sbjct: 120 SIQEKETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ +V+ +DV + +LR+K+ G YI T WG GY ++ Sbjct: 180 DSIWGKGYPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYFKD 227 >gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 230 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + IE+ LK+E + V G + ++L + + D IILD+ + + G + Sbjct: 6 ILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVVNGIDA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + +TP+ +LS DK+ GL GADDY++KPFN EL+AR++A +RR Sbjct: 66 CIKIR-EQYNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRRFTKL 124 Query: 123 AQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + L + L+ V G I+LT E +++LL + K E Sbjct: 125 NTAHTSSKVLEQDGLTLNLETGKVHKNGDEINLTPTELSILKLLWMNKGMVFKIETIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I KLR+K+ +YI TVWG GY E Sbjct: 185 VWGQEYFDNNNTVMVHIRKLREKIEENPRTPDYIYTVWGVGYKFGE 230 >gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] Length = 238 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 9/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E F V GE+G+ + D +ILDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 63 VCREIR-KTSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +V+ +DV + +LR+K+ + +I T G GY ++ +++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIKTPEQEKEA 238 >gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 5/232 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++ED+ + I+ L++ F V V D GED + D ILD+ L I G EV Sbjct: 6 IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLPGIDGLEV 65 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ + P+ +L+ S DKV GL+ GADDYI+KPF+ ELVAR++A+ RR Sbjct: 66 CRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFRRVN 125 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G+++++ + + V + + KE++++++L L K L++E L+ Sbjct: 126 TATEPKIDVLSHGEITIDCNRREVYKGSRLLEMPLKEFELLKMLVLNKGKVLSREHLLDK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ E + +DV I LR+K+ + YIETV G GY + D Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDNDENPTYIETVRGIGYRFTDKNPDSA 237 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 178 ACMKIR-EDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K ++ Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + V I K+R K+ + YI+TVWG GY + Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D++ + ++ L E F + G + L + +D I+LD+ L + G E Sbjct: 4 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 64 VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L + + V + LT KEY+++ L N TLT+E Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ E +++DV I KLR+K+ + YI+T+ G GY +E D T Sbjct: 184 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 240 >gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D ++ Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 72 AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 131 Query: 122 HAQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + D ++L + V G + LT E+ ++E+ LT+E Sbjct: 132 AAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 191 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245 >gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 235 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 135/235 (57%), Gaps = 3/235 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA+ + L+ E F V GEDG+ FDAI+L++ L + G+ Sbjct: 1 MRVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR +I TP+ +L+ D+ GADDY+ KPF+ LVAR+RA+VRR+ Sbjct: 61 EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDLS++ + V + LT +E+ ++E L +T LTK L +++D Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + + I++V++ LR+K+ +A G + I+TV G GY L + ET E E+ Sbjct: 181 AHYDGDENIVEVYVGYLRRKI-DAPFGAHTIDTVRGVGYRL--TTRPETPESPES 232 >gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 232 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 231 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ ED+K + I L +K EN NV+ G++ +++ + + D I++D+ + I G Sbjct: 1 MNILIAEDEKDIRDLISLHMKKENHNVFEASDGKEALDIFECEKIDLILVDIMMPKINGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ +R + P+ ++ M S DKV L GADDY+ KP + EL AR+ + +RR Sbjct: 61 AVIQKVR-ESSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCY 119 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ TGDL + D V +I L KE+++++LL TK+ Sbjct: 120 RYTENREDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I V + +R+K+ + YI+T+ G GY + Sbjct: 180 VWGEIYIGDSNNIMVHLSHIREKIEDDPKNPVYIKTIRGIGYKIE 224 >gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 248 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ + G I LT +E+ ++ + ++ L Sbjct: 126 LAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 N ++ + E ++ I +LR K+ I TVWGRGY L + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKLAVPGE 236 >gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1] gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 232 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E F + GE IE + D I+LD+ L + GF Sbjct: 4 KILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ISTP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLR-QTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL +++D V+ + LT +E+++++ L+L++ ++E L Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +V+ +DV + +LR+K+ N +YI T G GY Sbjct: 183 KVWGYEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGYYF 227 >gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 228 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTTGEQAVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae NTUH-K2044] gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] Length = 238 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD+ +A + L L+ E + + G + + +DA+ILDL L + G E+ Sbjct: 5 ILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVDGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 65 CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124 Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+L++ LS++ ++ V+++G + LT +E+ ++ + ++ L Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLALLE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++ + E ++ I +LR K+ + I TVWG+GY ++ Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKFAPVTQEAAP 238 >gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT] gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 230 Score = 190 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD L + L E + + + G + + + ++ +ILD+ + I GFE Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ SS DKV GL++GADDY+SKPF +EL+AR++A++RRS+ Sbjct: 65 LCRLIRAESSV-PILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQM 123 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL + ++ V G + + KE+ + L + ++E L Sbjct: 124 QNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I LR+K+ ++ TV G GY E Sbjct: 184 KVWGYDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFEE 230 >gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 331 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ + G + FD +ILDL + + G Sbjct: 106 KILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMDGMT 165 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R I+TPV IL+ DK+ GL+SGADDY+ KPF+ ELVAR++A++ R+ Sbjct: 166 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNRTMP 225 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G+L+++ + TV V G + LT KE+ ++ L+ K L++E L + Sbjct: 226 KPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKV 285 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +D + LR L ++YI TVWG GY +A Sbjct: 286 WNYDYFGEDRTVDTHVKMLRGHLG---KCRSYIATVWGIGYKFDPDA 329 >gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803] gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803] Length = 234 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + +D I+LD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VARI+A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRRHMK 124 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I G +N + + V GH + + + +Q++ N +KE Sbjct: 125 QTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232 >gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 238 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++ED+ + I+ L++ F V V D GED +E D ILD+ L I G EV Sbjct: 6 IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLPGIDGLEV 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ + P+ +L+ S DKV GL+ GADDYI+KPF+ EL+AR++A+ RR Sbjct: 66 CRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFRRVN 125 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G++ ++ + V + + KE++++++L L K L++E L+ Sbjct: 126 TTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPLKEFELLKMLVLNKGKVLSREHLLDK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E + +DV I LR+K+ + YIETV G GY + D Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDNDDNPTYIETVRGIGYRFTDKNPD 235 >gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] Length = 237 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IED+ + + L+SE + VY + GE+G L + Y+ D I+LDL + G+E Sbjct: 4 RIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ IL+ + D++ GL GADDY++KPF+ ELV R++ ++RR Sbjct: 64 LCEEIR-QHSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL ++ + V V GH I LT KE++++ +++ ++ Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++D E + V + +LR+KL +I TVWG GY + +E Sbjct: 183 LEQIWDFEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFDPDGGNE 236 >gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius CECT 5713] Length = 233 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++A+ ++ L+ + V + G D ++ ++D IILDL L I G E Sbjct: 3 KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R KI+T + IL+ DK+ GL+ GADDY++KPF+ E+VAR++A+ RR Sbjct: 63 VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + G+ VNLD+ + + + I LT KE++++ +K L +E Sbjct: 123 YSDNSEKDSKNKYYFGNYVVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN+++ + +++D+ + LR+K+ +++TV G GY + Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFEDE 233 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 122/229 (53%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ + H + + L+ E + V G + +E + ++ +I+DL + +I G++V Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 R +R + P+ +L+ D+V G + GADDY+ KPF+ +ELVAR++A R + Sbjct: 64 CRDVR-ERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGN 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++ G L + D V + +I T +E++++ L+ + ++E + ++ Sbjct: 123 TAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +D + K+R+KL ++ + TVWG GY A +E Sbjct: 183 GYDFYGDARTVDTHVKKIREKL-ADPKVRSMLATVWGVGYKFDPEAVNE 230 >gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037520|gb|ABF64132.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 239 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 158/227 (69%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLS A G+NYIETVWGRGYVLR+ +D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGENYIETVWGRGYVLRDPQED 227 >gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] Length = 234 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ A+ + LK N+ V D G D ++ + D +I+DL L + G Sbjct: 3 MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R P+ +L+ SS DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122 Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++++ TV+ + LT E+++++ L N L+++ L Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +I+D+ I LR KL + I+T+ G GY Sbjct: 183 EQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEF 228 >gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 235 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 ILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR I TP+ ++S S DKV L+ GADDY++KPF+ ELVAR++AI+RR+ Sbjct: 65 CKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSKE 124 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q V G L+V D V H + LT KE++++ L N TLT+E Sbjct: 125 QQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR K+ + +I+T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234 >gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 237 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 13 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR+ Sbjct: 73 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAT 132 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ DL ++ + V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 133 GEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ I T+ G GYVLR+ A Sbjct: 193 NYDFRGDDNIVESYISYLRRKV--DNTQPRLIHTLRGVGYVLRKPA 236 >gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 233 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V + G +G+ + + E ++LD+ + I G + Sbjct: 6 ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKIR-EAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++ +N+ V V+ + LT +E+ ++ELL+ + E Sbjct: 125 NGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ R + V I K+R+K YI+TVWG GY + ++ Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232 >gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 235 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +L H I+ L+ +++ VY TD G+ + L + + D IILDL L D+ G + Sbjct: 5 KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + +R P+ +L+ S +D V GL GADDY+ KPF+ EL+AR+ +++R Sbjct: 65 VCKTIRKKSDI-PILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + LS++ + V V+G + LT E++++E L+ ++ + Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N + E + IDV I +R+K+ + ++I TV+G GY +E DE Sbjct: 184 NLIQGDDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKFQE-VPDE 235 >gi|84500835|ref|ZP_00999070.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597] gi|84390902|gb|EAQ03320.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597] Length = 238 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 159/228 (69%), Positives = 189/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV++I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRVSRIETPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKVSVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ +E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQPEE 228 >gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c] gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 257 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD A+ S+E L+ E + V G +EL D +LD+ + + G E Sbjct: 12 RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR PV +L+ + D+V GL GADDY+ KPF EEL AR+RA+ RRS Sbjct: 72 ACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALSRRSAL 131 Query: 122 HAQSLI--------------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 A++ G + ++ ++ V G + LT EY+++EL Sbjct: 132 AARAGAGRGGAAVSGGPAPLTYGGVVLDQSSRQVTRDGRELTLTKTEYELLELFLTHPRQ 191 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L++ M + ++ P ++VF+ LR+KL A G + TV G GYVLRE A Sbjct: 192 VLSRSMIMERVWGYDFGPSSNSLEVFVSYLRRKLE-AGGEARLLHTVRGVGYVLREQA 248 >gi|326798983|ref|YP_004316802.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326549747|gb|ADZ78132.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 230 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 105/223 (47%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +IEDD+ L + L+SE++ V G+D L + D ++LD L G E Sbjct: 6 KIAVIEDDENLRFLVVHRLESEHYQVIQASNGKDAETLILTEKPDIVLLDWMLPGKQGSE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR A + V +++ S DK+ G DYI+KPFN + LVA I V+ Sbjct: 66 VCANLRKAGFNNLVIMMTAKSQDVDKIDAYSFGVSDYITKPFNMDVLVAMIENKVKFFVN 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +A + G+ + + ++ G +I LT E +++ N ++++ + ++ Sbjct: 126 NANDTLYFGNTEHHPNTHSLIRDGKKIELTILENRILLYFLQNVNRVISRDELMQVVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +D+ I +LRKK+ +++TV G GY + Sbjct: 186 SSNVNTRTLDMHIVRLRKKIEINPDKPYHLQTVRGMGYKFVAD 228 >gi|256396504|ref|YP_003118068.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362730|gb|ACU76227.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 229 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L + V + G +E DA++LD+ + + G Sbjct: 1 MHILVVDDDQAVRDSLRRSLAFNGYEVELAADGLAALEAIAKRRPDAVVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR A PV +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 61 ETCRRLRSAGEDLPVLLLTARDAVPDRVAGLDAGADDYLPKPFALEELLARLRALLRRTQ 120 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + DL+++ + V G + LT E+ ++ELL LT+ L Sbjct: 121 GSLADQSDAPLAFADLTLDPATREVTRAGKPVRLTRTEFNLLELLMRHPRQVLTRAQILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V++ LR+K I TV G GY LRE A Sbjct: 181 EVWGYDFPTTANSLEVYVGYLRRKTEAD-ELPRLIHTVRGVGYSLRETAP 229 >gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 231 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ A+ I++ L+ E ++VY GE+GIE+ + ++LD+ L I GF+ Sbjct: 4 KILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVMLPGIDGFK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GLQ G DDY++KPFN EL RI+++ RR Sbjct: 64 VCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVIP 123 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ ++ G + LT E+ +++ K +T+E LN Sbjct: 124 EDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLNK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + KI+DV I +LR K+ + YIETVWG GY + Sbjct: 184 VWGEEFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGYRWNDE 230 >gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 237 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++L L+ E +++ G G+ + + +DA+ILDL L + G E Sbjct: 6 RILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 66 ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L + L+++ A+ V++ I LT +E+ ++ + ++ L Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 N ++ + E ++ I +LR K+ + I TVWG GY ++ Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGYKFAAPPQE 237 >gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ + ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +I+TVWG GY + Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226 >gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + L L+ E + V G +G+ + ++DA++LDL L I G E Sbjct: 16 RVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 76 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + +S++ A+TV+V R+ LT +E+ ++ + + ++ L Sbjct: 136 IERNARIDAGSLAVHGVSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDLL 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 NH++ + E ++ I +LR K+ I TVWGRGY Sbjct: 196 NHVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGYKF 241 >gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRGKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V +I LT KE+ ++ LL+ + Sbjct: 120 RFLTLNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G +I LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 129/223 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ LK + V + GE G + + + +D IILD+ L + G Sbjct: 1 MRILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR A TPV +L+ + DKV+GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L ++ + K V G +HLT KEY ++EL + L + L HL+ Sbjct: 121 TALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + V I +LRKKL + + IETV+G GY L++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRSVGASPDSIETVYGLGYRLKQ 223 >gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis] Length = 223 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] Length = 238 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E+ ++D I+LDL + G E Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCKGVR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G+ ++LT KEY+++ L+ + +E Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234 >gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ G++ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGYD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|229028889|ref|ZP_04184990.1| Response regulator [Bacillus cereus AH1271] gi|228732460|gb|EEL83341.1| Response regulator [Bacillus cereus AH1271] Length = 234 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEKNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRKKTDC-PIFFLTAKTSDLDKISGFSQGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QAVPNEQKAHSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 227 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++++ + + + ENF V + GE+G+ + D ILD+ L + GF Sbjct: 1 MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR + + +L+ DK+ GLQ GADDY+ KPFN E+ R++A++RR Sbjct: 61 EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I + ++L ++++ + I +T KE+ ++++ T++ LN Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + KI+DV I +LR K+ + YIETVWG GY + Sbjct: 181 LVWGIDFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYRWK 226 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 9/232 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +LL++D++ + ++ L E + + G ++L + FD I+LD+ L + Sbjct: 1 MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R I+TP+ ++S DKV L+ GADDY++KPF+ EL+AR++AI+RR Sbjct: 61 GIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRR 120 Query: 119 SRGHAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + D D V ++LT KEY+++ L N TLT+ Sbjct: 121 TEKDQTDDNDLSDEQWVVNGLRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E L ++ E +++DV I KLR+K+ + +I+T+ G GY +E Sbjct: 181 ERLLERIWGYDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKFKE 232 >gi|86358932|ref|YP_470824.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CFN 42] gi|190893160|ref|YP_001979702.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 652] gi|218682349|ref|ZP_03529950.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 894] gi|86283034|gb|ABC92097.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CFN 42] gi|190698439|gb|ACE92524.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 652] Length = 233 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE + EY ETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DGTEYAETA 233 >gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 224 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 127/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A+ + L + + V + GE G E + + +D I+LD+ L + G Sbjct: 1 MRILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + S PV +L+ + EDKV GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ + V +HLT KEY ++EL +N L++ L++L+ Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + V I LRKKL ++IETV+G GY L++ Sbjct: 181 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 223 >gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM] gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSE 237 >gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 224 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F G + + + D ++LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLMLPGMSGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+ + D V GL+SGADDYI+KPF EL+ARIRA +R++ Sbjct: 64 ICKEIRKESNV-PIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNSE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL V++ V G I LT E+ ++ L+ + T+E L ++ Sbjct: 123 EPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R+ + ++++V + +LR K+ + I TV G GY Sbjct: 183 RNASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGYK 221 >gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 242 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ I GD+ VN+ + V + + LT +E++++ELL + L Sbjct: 134 SGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYE 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 194 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241 >gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+K +++ ++ L+ E F+V G + L K +D ++LDL L + G Sbjct: 1 MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLPGLSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R +TPV +L+ +ED+++GL GADDYI KPF+ E+VARI+A++RR+ Sbjct: 61 EICREIR-KISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTH 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ L+++ V Q I LT E++++ L+ ++ + Sbjct: 120 IETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQ 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ID I KLR+KL G I TV+G GY + ++ Sbjct: 180 IVQGHDFGGDERVIDAHIKKLRQKLEGVPGDPKIILTVYGVGYKFNAHKEE 230 >gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 223 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 6/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + + L E + V + GE G++L FD +ILD+ L G+ Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR ++ TPV +L+ ED+V G + GADDYI+KPFN + L+AR+++++R++ Sbjct: 68 ILREIK-KYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+I GDL +N + +V I L KEY ++ L L++E LN ++ Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID I LRKK+ A I+T+ G GY L Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + + ++LD+ + + Sbjct: 1 MKNISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q I G + ++ + +TV V G I LT KE+ ++ +L+ + Sbjct: 120 RFLTLNQPKIEESKSALEIGGIVIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1] gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1] Length = 223 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 227 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++++ + + + ENF V + GE+G+ + D ILD+ L + GF Sbjct: 1 MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR + + IL+ DK+ GLQ GADDY+ KPFN E+ R++A++RR Sbjct: 61 EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I + ++L ++++ + I +T KE+ ++++ T++ LN Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + KI+DV I +LR K+ + YIETVWG GY + Sbjct: 181 LVWGIDFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYRWK 226 >gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58 RILL+EDDK++ ++ L SE F V G ++ + D IILDL L + Sbjct: 13 RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E+ R +R + TP+ ILS + D+V GL+ GADDY++KPF EL+AR RA++RR Sbjct: 73 GLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRR 132 Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S+ + ++I + + L+ V I L+ KE++++EL +++ Sbjct: 133 SKRNKKNIEKSHTVIEFNHIKMFLEECRVTSFDKEITLSPKEFKLLELFMKNPKRVWSRD 192 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L +++ + K +DV + LR+KL +++TV G GY Sbjct: 193 LILEKIWEIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241 >gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 230 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + I L ++ E F V G +E+ + + +ILD+ L G++ Sbjct: 8 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + PV +LS DKV GL+ GADDY+ KPF +ELVAR++A++RR Sbjct: 68 VCREIR-KISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEH 126 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L +N T++V G + KE +++ L+ N T+E + ++ Sbjct: 127 KDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL + +TVWG GY Sbjct: 187 GYDFYGDSRTVDVHIKRLREKLDSEGQNWQL-KTVWGVGYKFE 228 >gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 233 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE+ + + D IILDL L I G++ Sbjct: 6 KILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS DKV GL+ GADDY+ KPF+ +ELVAR+RA++RR + Sbjct: 66 VCREIRH-TSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + DL+VNL V G ++ + KE +++ L+ N T+E L Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPHWS--IATVWGIGYKFE 229 >gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 236 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 117/233 (50%), Gaps = 4/233 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I L +N+ V GE ++L + D +ILD+ L D GF Sbjct: 5 KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ V +L+ ++ DK++G + GADDYI+KPF EL AR+RA R Sbjct: 65 LCQEMQDRTRVF-VLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ + V + +I L+ E+ ++ L+ + + L + Sbjct: 124 VEDTEMRSLTYGDLVIDPVRREVYISDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +D E E +++DV I ++RKK+ I+T+ G GY+ +E + Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGHEEPRD 236 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L +NV + + G +E+ + +ILD+ + + G Sbjct: 24 MKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VRRS Sbjct: 84 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143 Query: 121 GHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + GDL+++ +++ V G I LT E+ +++LL + LT+ Sbjct: 144 VESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K G I TV G GYVLRE A Sbjct: 204 ILEEVWGYDFPTSGNALEVYIGYLRRKTELE-GEDRLIHTVRGVGYVLRETAP 255 >gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 229 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ + +++ L+ E + V+ GE+GI++ + + ++LD+ L + GF Sbjct: 4 KILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ + DK+ GLQ G DDY++KPFN EL RI+++ RR Sbjct: 64 VCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ I+ ++ + I LT EYQ++++ + ++ L + Sbjct: 124 EEENDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKIV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ YIETVWG GY + Sbjct: 184 WGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYRWQ 227 >gi|94497501|ref|ZP_01304071.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94423132|gb|EAT08163.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 235 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 157/231 (67%), Positives = 191/231 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG+S ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRAAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG LSVNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+ + E + Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLRDPDEVEETQ 231 >gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K L + LK+E+++V G++ ++ + +DA++LD+ + + G Sbjct: 1 MRILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R TPV +L+ S+ED+VRGL +GA+DY+ KPF EEL+ARIR ++R+ + Sbjct: 61 SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q++ DL V+LD V GH I L+GKE+ ++ L L+++ HL++ Sbjct: 121 EAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LRKK+ + I TV G GYV+R Sbjct: 181 YDYAGGSNVIDVYIRYLRKKI-DEGSQTKLIHTVRGAGYVMRAE 223 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 130/227 (57%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E +++ V G + + + + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V + +R + PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A+ R Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I GD+ VN + V + LT KE+++++LL K+ LT+E+ L+ + Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSNE 231 >gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] Length = 232 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q +V G + ++ + +TV V G ++ LT KE+ ++ LL+ Sbjct: 120 RFLTLNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 233 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V+R +R TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR S Sbjct: 69 VIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSAS 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL ++ +A V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ I T+ G GYVLR+ A Sbjct: 189 NYDFRGDDNIVESYISYLRRKV--DNTQPRLIHTLRGVGYVLRKPA 232 >gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 235 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G EV Sbjct: 5 ILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR I TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 65 CKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSKE 124 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q V G L+V D V H + LT KE++++ L N TLT+E Sbjct: 125 QQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRER 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR K+ + +I+T+ G GY +E Sbjct: 185 LLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 178 ACMKIR-EDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K ++ Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + V I K+R K+ + YI+TVWG GY + Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ + G + L +D +ILDL + + G Sbjct: 3 KILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDGMS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R +I+TPV IL+ DK+ GL+ GADDY+ KPF+ ELVAR++A++ R+ Sbjct: 63 CLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + G+LS++ + TV+V G + LT KE+ ++ L+ K L++E L + Sbjct: 123 RTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +D + LR L G YI TVWG GY +A Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 226 >gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126] gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126] Length = 235 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 VAKEIR-KTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA + +G+ + LT +E++++ L+ +T+ Sbjct: 122 IETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256 >gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 232 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + Sbjct: 1 MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRAKHHM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V +I LT KE+ ++ LL+ + Sbjct: 120 RFLTLNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I LRKKL I+TVWG GY Sbjct: 180 VENIFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F+ V + G + + + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLRSRSSV-PIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGD 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++++ V V G + L KE+ ++ELL LT+ ++ + Sbjct: 122 VEALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ Y+ TV G GY L Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKLE 225 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 1/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA + L+SE + V + G +EL + IILDL L + G EV Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + LR + TP+ +L+ DKV GL+ GADDY+SKPFN +EL+ARI A+ R + Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ +V ++ L+ +E+Q++E L T+ +E ++ Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ID I +LR KL + YI TV G GY Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC----------KFYEFDAIILDL 52 IL+IED+ + ++ L L+ E ++ V G + + L + E IILD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L I G ++ R +R + P+ ++S S D+V GL+ GADDY++KPF E++AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 RAIVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RA++RR+R ++ DL + ++G ++L+ KEY+++EL Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L+ ++ + K +DV I LR+K+ YI TV G GY Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] Length = 224 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 91/225 (40%), Positives = 136/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ ++ + +D I+LD+ L + G+ Sbjct: 1 MKILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ +IEDK++GL GADDY+ KPF+ EL+ARIRAI+RR Sbjct: 61 EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKEDE 224 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ +L ++ + +++ + V GE+ + FD IILD+ + I G Sbjct: 10 MKILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGL 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R + I TPV +L+ +EDK++GL GADDY+ KPF+ +EL+AR+RA+ RRS Sbjct: 70 AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S++ DL ++ + V G + LT +E+ ++E L KN +++ H++ Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189 Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P +DV I LR K+ I+T+ G GY+++++ Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIE-NFDNNRIIQTIRGVGYIIKDS 234 >gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2] gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD +++ ++ L E F V + GE+G+ L + +DAI+LD+ L + G + Sbjct: 3 HILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R + PV ++S DK GL GADDYI+KPF+ EL ARI+A +RR+ Sbjct: 63 FLKMIR-EQSKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q ++ +L+V+++ +V+ G + LT E++M+ L TKE Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNDDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 233 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 12/232 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D++ +A + + L+ E ++V G++ I + + D +ILD+ + + Sbjct: 1 MKTISILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R + P+ LS +S DKV GL GADDYI+KPF ELVAR+ A +R Sbjct: 61 DGYEVTRRIR-ETHNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R Q + +L+ +TV + G I LT KE+ ++ LL+ Sbjct: 120 RFMKLNQPRTAVDPKTRLDYRGLVISLEQRTVTLYGENIELTPKEFDILYLLASHPKKVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++ + V I LRKKL +I+TVWG GY Sbjct: 180 SVENIFKQVWGEAYFEGANTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYAF 231 >gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] Length = 224 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L + I LK NF+V GE+ +E + +D I+LD+ L + G+ Sbjct: 1 MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ SIEDK++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL +++ KTV G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DIGNSKPLIHTKRGLGYVLKEDE 224 >gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 132/229 (57%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ + + L++ + V ++ G++G++ + D +ILDL L D+ G E+ Sbjct: 5 VLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEI 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + P+ +L+ S DKV GL+ GADDYI+KPF+ EL+ARI+A++RR++ Sbjct: 65 CKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I GD+ ++ V +G + LT KE+++++LLS LT++ L+ Sbjct: 125 QPEEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + +DV I LRKK+ + YIETV G GY L++ + Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLKDKGE 233 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V+ G + L + E D ++LD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR PV L+ DKV+GL G DDY++KPF+ EE+VARIRAI+RR+ Sbjct: 71 VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTSA 130 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ DL ++ D+ V GH + L+ E++++ L L L+K L+H+ Sbjct: 131 GLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-----KNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ A I T G GY+LRE + Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLLREPS 242 >gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + D G++ I +D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQIR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 233 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ I+ + E + V G++ I L K +D I+LD+ + + GFE Sbjct: 4 KILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R PV +L+ DKV GL+ GADDY+ KPF+ EL+AR++A++RR Sbjct: 64 ALREIR-KTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFDS 122 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL ++L+ V I LT +E+++++ L+ ++E L Sbjct: 123 PDKKDDSSILKVMDLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSREELLEE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +++ +DV + +LR+K+ + G YI+T G GY + Sbjct: 183 VWEYEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGYFFASD 229 >gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 239 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 R+L++EDD +A + + L E ++V G+ G+ L + DA++LD+ L + G Sbjct: 5 RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R P+ I+S S ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQS + G L ++ A+T V G+ + LT +E+ ++ + + + Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ + + ++ I +LR K+ + TVWGRGY L + A Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235 >gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y+ D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + GDL ++L + V G + L E+ ++E+ LT+E Sbjct: 132 AATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQI 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR + Sbjct: 192 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGGAE 243 >gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L + V GE+ + + K +D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQAIR-EFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSP 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GD+ ++ D++ + + + I+LT +E++++E+L +N ++E L Sbjct: 123 ERAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + +LR+K+ Y+ T WG GY Sbjct: 183 IVWGEDYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGY 225 >gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L ED+ L + L E F+V G + I+ +F ++D ILD+ L GF Sbjct: 1 MRLLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQFTDYDVAILDIMLPHADGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR K +TPV L+ SIED+V+GL SGA+DY+ KPF+ EEL+ARIR + R Sbjct: 61 AILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++++ DL +NL + TV G I LT KEYQ++E L K L++E NH+++ Sbjct: 121 NLSENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IDV+I LRKK+ + I TV G GYV+RE+ Sbjct: 181 YDYEGGTNVIDVYIRYLRKKI-DDGFDTKLIHTVRGAGYVIRED 223 >gi|30019274|ref|NP_830905.1| two-component response regulator yvrH [Bacillus cereus ATCC 14579] gi|229078408|ref|ZP_04210970.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|296501821|ref|YP_003663521.1| two-component response regulator yvrH [Bacillus thuringiensis BMB171] gi|29894817|gb|AAP08106.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579] gi|228704901|gb|EEL57325.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|296322873|gb|ADH05801.1| two-component response regulator yvrH [Bacillus thuringiensis BMB171] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L+ F V GE G++ + +DAIILD+ L GF Sbjct: 1 MRVLIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIMLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R T V +L+ + D+V GL++GADDY+ KPF EL+AR+R I+RR Sbjct: 61 EILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI DL ++L G + LT KE++++ LL+ R +++ + ++D Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV + +LR KL + + I TV G GYVL + Sbjct: 181 INFDSGTNVVDVHMYRLRAKL-DDPFSRRLIHTVRGVGYVLED 222 >gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + + LK + +V+V D G +++ + D +ILD+ + + G+ Sbjct: 6 KILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVMMPEYDGWA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D++ G + GAD+Y++KPF+ + LVAR++A++RR Sbjct: 66 VCREIR-KTSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAE 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H +I L ++ + V V G + L+ KE++++ L + L ++ LN ++D Sbjct: 125 HKNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWDY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I LR KL +I+T+ G GY Sbjct: 185 NYFGDARTVDTHIKNLRHKLGAKG---LFIKTIRGLGYKFE 222 >gi|229016415|ref|ZP_04173357.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022644|ref|ZP_04179169.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738653|gb|EEL89124.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744823|gb|EEL94883.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +LK E F ++ E + L + +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILKKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHMQ 124 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G ++ + + V G+ + + + +Q++ N +KE Sbjct: 125 QSVQEQKTHSISFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEIYE 184 Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a] Length = 250 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 16/241 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD A+ S+E L+ E + V G D ++ + D ++LD+ + I G E Sbjct: 9 RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRDQPDIVVLDVMMPRIDGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR PV +L+ + D+V GL GADDY+ KPF EEL AR+RA+ RR+ Sbjct: 69 TCRQLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALTRRAAL 128 Query: 122 HAQSLI---------------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 A++ G +S++ ++ V + LT E++++EL Sbjct: 129 AARAAGAGGAGGPGALADSVLRYGGVSLDQASRQVTRGERELTLTKTEFELLELFLSHPR 188 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L++ M + ++ P ++VF+ LR+KL A G + TV G GYVLRE A Sbjct: 189 QVLSRSMIMERVWGYDFGPTSNSLEVFVSYLRRKLE-AGGEPRLLHTVRGVGYVLREPAG 247 Query: 227 D 227 D Sbjct: 248 D 248 >gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ A+ +++ L+ E ++VY GEDG+ + + + ++LD+ L I GFE Sbjct: 4 KILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R LR + +L+ + DK+ GLQ G DDY++KPFN EL RI+++ R Sbjct: 64 VCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++LI+ ++ ++ + LT EYQ+++ L ++ LN + Sbjct: 124 EEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNLV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + KI+DV I +LR K+ A +IETVWG GY Sbjct: 184 WGEDFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGYRW 226 >gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 227 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++++ + + + ENF V + GE+G+ + D ILD+ L + GF Sbjct: 1 MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR + + +L+ DK+ GLQ GADDY+ KPFN E+ R++A++RR Sbjct: 61 EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I + ++L ++++ + I +T KE+ ++++ T++ LN Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + KI+DV I +LR K+ + YIETVWG GY + Sbjct: 181 LVWGIDFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYRWK 226 >gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L+ F V GE G+E + +DAIILD+ L GF Sbjct: 1 MRVLIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIMLPRRNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R T V +L+ + D+V GL++GADDY+ KPF EL+AR+R I+RR Sbjct: 61 EILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI DL ++L G + LT KE++++ LL+ R +++ + ++D Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV + +LR KL + + I TV G GYVL + Sbjct: 181 INFDSGTNVVDVHMYRLRAKL-DDPFSRRLIHTVRGVGYVLED 222 >gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124] gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124] Length = 235 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 VAKEIR-KTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA + +G+ + LT +E++++ L+ +T+ Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] Length = 237 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED++ + + L+ E ++ G G++L D ++LDL L + GFEV Sbjct: 5 VLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +L+ DKV GL+ GADDYI+KPF EL+AR++A +RRS Sbjct: 65 CRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRRSAMA 124 Query: 123 AQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G + V+ + TV G+ + LT +EY +I L+ + ++E Sbjct: 125 PAQGEQAQPASGKRLELGRVVVDQEKATVYKDGNPLELTQREYDLICYLASQPGKVFSRE 184 Query: 173 MFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + H+++ +V+ +DV + +LR+K+ + +I T G GY+ Sbjct: 185 ALMEHVWNYEGYVGDVRAVDVAVRRLREKIEDDPASPKFIVTKRGMGYLF 234 >gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++++ED+KA++ I+ L+ E + V V GE+G+E+ D ++LD+ + + G Sbjct: 3 KVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ + DKV GL+ GADDYI+KPF EL+AR++A +RR Sbjct: 63 VCKLVR-KTKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTS 121 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 H + I G+L +NL+ V G I LT +E+++++ L+++K T+E Sbjct: 122 HEEIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L ++ +V+ +DV + +LR+K+ + Y+ T G GY R Sbjct: 182 ILLEKVWGFEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYFR 231 >gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V GE+ ++ + D +ILDL L G E Sbjct: 4 KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + + + ++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVRQSHDLSIIMV-TAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G+L + +A VE G I LT +E++++ L+ +T+E L Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKTGTNIELTHREFELLRYLAQHMGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + + + T G GY ++ + Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE 234 >gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L +E + V V + G G + + +D IILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR A++ TP+ +L+ D+ GL GADDY++KPF+ L ARIRA++RRS Sbjct: 61 QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ GDL ++ AKTV I LT KE+ ++E L+ R ++K L H++D Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +V I++V+I LR+KL +A G+ I T+ G GY L + Sbjct: 181 FAYDGDVNIVEVYISYLRRKL-DAPFGRQAITTLRGAGYRLAADG 224 >gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K ++ + L+ E + V V GEDG+ D ++LD+ L + GF+V Sbjct: 5 ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLDGFQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R +R A S P+ +L+ DKV GL+ GADDYI+KPF EL+AR++A +RR+ Sbjct: 65 CRKIR-ASSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTESG 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + TG + ++ V I LT +E+++++ L+L+ T+E L + Sbjct: 124 SGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ +DV + +LR+K+ + + YI T G GY R Sbjct: 184 WGYEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYFR 227 >gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D++ ++L L+ E F V GE+G++ + +D +ILD+ L + GF Sbjct: 3 KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R +R + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA++R Sbjct: 63 VCREIRT-FSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +N+ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 242 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +S+ GD+ +N+ + V + + LT +E++++ELL+ + L Sbjct: 134 SGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIYE 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 194 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241 >gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGF 60 I +IEDD+A+ +E L E + V V G++G+ + FD +++DL + I G Sbjct: 8 IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMPKIDGM 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R A P+ I+S S DK GL GADDYI KPF+ EL AR++AI+RR+ Sbjct: 68 EVIRRIR-AYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRRAT 126 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + GDL ++ D+ V Q I LT KE++++ L + N TK Sbjct: 127 QYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQIY 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I+V + +LR K+ + YI+T+WG GY Sbjct: 187 AKVWNDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGYKWE 233 >gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 222 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + L+ E F V V G +G+ + E+D +I+D L + G Sbjct: 1 MRILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLLPGLSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R R PV L+ ++D + GL+SGA+DY+ KPF EEL+ARIR +R Sbjct: 61 EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRL-S 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G + +NL A V G + LT KE+ ++E L + + T+ + H++D Sbjct: 120 GSETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV++ LRKKL + AG IETV G GYV+R Sbjct: 180 IHFDADTSVIDVYVNFLRKKL-DGAGCGALIETVRGVGYVIR 220 >gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus thermophilus ND03] Length = 235 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 VAKEIR-KTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA + +G+ + LT +E++++ L+ +T+ Sbjct: 122 IETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans TK24] gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 16 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 76 AARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 135 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DL+++L + V G + LT E+ ++E+ LT+E Sbjct: 136 AAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTREQ 195 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 196 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 248 >gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 226 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 122/224 (54%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA +EL L SE + V V G G+ L + D ILD L + G E Sbjct: 4 HILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLTGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 64 ICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ L+ DLS+N + V + I LT KE+ ++E L T++ L ++ Sbjct: 124 TAEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + II+V+I LR KL K I TV G GY LRE + Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEEN-NEKRLIHTVRGVGYALREQS 226 >gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I + L++E ++V GE+ ++ K +ILD+ + + G Sbjct: 4 ILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVMMPRMDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R +TP+ +LS DK+ GL +GADDY+ KPFN EL+AR++A +RR Sbjct: 64 CLKIR-EISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRRQALI 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + SLI+ DLS++ +V+++G+ I LT E+ ++ LL+ + E ++ Sbjct: 123 GKEEFNSLIIIKDLSIDKSKHSVKLKGNEISLTPLEFAILVLLASHPGQVFSSEHIYENV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + V I LR+KL YI+TVWG GY + Sbjct: 183 WKAPYGFSDNTVMVHIRNLREKLEQFPRDPLYIKTVWGVGYKIE 226 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K++ I LK NF V G + + L KF + D ++LD+ L D+ GF+ Sbjct: 4 RILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + + S V +L+ DKVRGL+ GADDYI KPF+ ELVARI+AI R + Sbjct: 64 VCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAGK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I G V+++A+++ + T +E+ ++++ N T++ LN ++ Sbjct: 124 QNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV I ++R+K+ + YIET+WGRGY+ R+ Sbjct: 184 EDFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGYLWRK 226 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 127/228 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ A ++ L S+N+ V G++G EL + + +D I+LD+ L + G Sbjct: 1 MKILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+ ++ DK GL +GADDY+ KPF EEL ARIRA++RR++ Sbjct: 61 TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +QS++ GDL + + V + + LT KEY ++EL + L +L+ Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + P + + I LR+KL A + IETV+G GY L+ + E Sbjct: 181 FEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRLKPKERRE 228 Score = 67.7 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + + +L+ + EL + D +ILD+ + I G E Sbjct: 513 RVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTE 572 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + +R + P+ L+ S E + GADD++SKP Sbjct: 573 LCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPI 616 >gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] Length = 247 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ E + + D G+ +E ++D I+LD+ + G E Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R K +TP+ +L+ ++V+G + G+DDYI KPF+ E+V R++A++RR Sbjct: 75 VCKGIR-EKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +IV L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 134 TTFFTQDTTTKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL +A I TVWG GY Sbjct: 194 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFE 243 >gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 230 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + G + ++L DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTSP 123 Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ + V +I LT E+ ++E+L LT+ L + Sbjct: 124 DEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRILEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V+I LR+K + A+G I TV G GYVLRE Sbjct: 184 WGFDFPTSGNALEVYIGYLRRK-TEASGEPRLIHTVRGVGYVLRE 227 >gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334] gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSHP 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + +A + G + LT +E++++ L+ +T+E Sbjct: 122 IPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 237 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ I + L+ +F V G++ + K + ++LD+ L + G E Sbjct: 6 RILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPGMDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LRV V +L+ DKV GL+ GADDY+ KPFN ELVARIRA++RR + Sbjct: 66 VCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQT 125 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I G ++ A+ + + LT +EY ++++ N L+++ LN Sbjct: 126 DRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + K +DV I +LR+K+ + YIETVWG GY RE K Sbjct: 186 WGEDFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYRWREEGK 233 >gi|206968610|ref|ZP_03229566.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206737530|gb|EDZ54677.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|114707174|ref|ZP_01440072.1| response regulator,controls chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] gi|114537370|gb|EAU40496.1| response regulator,controls chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] Length = 230 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 172/230 (74%), Positives = 201/230 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVGGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+NA GGKNYIETVWGRGYVLRE ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLANATGGKNYIETVWGRGYVLREIEEEAAA 230 >gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150] gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150] Length = 236 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 VAKEIR-KTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + I G+L + DA + +G+ + LT +E++++ L+ +T Sbjct: 122 IETAAAEESSNSGKKEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 256 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256 >gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] Length = 234 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V GE+ ++ + D +ILDL L G E Sbjct: 4 KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + + + ++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVRQSHDLSIIMV-TAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G+L + +A VE G I LT +E++++ L+ +T+E L Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + + + T G GY ++ + Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE 234 >gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA ++ L+ E + V G G++L + + D +ILD+ L + GF V Sbjct: 4 ILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLPKLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D++ GL+ GADDY+ KPF+ EL+AR+RAI+RR+ Sbjct: 64 CRILRRETNI-PIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRRTDRQ 122 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L V+ ++ V + I L KE+ ++ L + L++++ L + Sbjct: 123 PTGVERELLTAANLKVDTGSRRVFRDNNEITLAQKEFDLLVCLMRNRGMALSRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + LR+K+ YI+TV G GY + Sbjct: 183 WGYDFPGDSRTVDVHVRWLREKVEVDPSNPIYIQTVRGIGYRFNDQ 228 >gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 227 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ +A ++ L+ E F V VT G++ + + D IILDL L +I G++ Sbjct: 4 KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEISGWD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + DK+ GL+ GADDY++KPF +ELVAR + +RRS Sbjct: 64 VCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEH 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S V L ++ + + V++ G I LT E+ ++ L+ ++ L+ L Sbjct: 123 TPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDKL- 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LRKK+ YI TV G GY +++ Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKD 225 >gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] Length = 229 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V G++ ++ + ++D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR R Sbjct: 64 VCRAVR-EFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRS 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I +GD+S++ D +++ + G I+LT KE+ M+ LL +++ L+ Sbjct: 123 REAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLH 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ + Y+ T WG GY + Sbjct: 183 TIWGSDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYFQ 228 >gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor A3(2)] gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 16 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 76 AARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 135 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DL+++L + V G + LT E+ ++E+ LT+E Sbjct: 136 AAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTREQ 195 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 196 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 248 >gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ ++L L+ E F V GE+G++ + +D +ILD+ L + GF Sbjct: 3 RLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R +R + P+ +L+ D++ G++ GADDY++KPFN EL+ARIRA++R Sbjct: 63 VCREIRT-FSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +++ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|126737637|ref|ZP_01753367.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6] gi|126721030|gb|EBA17734.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6] Length = 239 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 159/228 (69%), Positives = 189/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG ++K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIINTGKIAVNLDAKTVEVEGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228 >gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 3/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ L + L++E FNV+ G +G+ + + + D I+LD+ + ++ G + Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +RA + TP+ +L+ DK+ GL+ GADDYI+KPFN E++AR+RA++RRS Sbjct: 65 MRAW-NKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + A T+ V + LT E++++ L ++ L+ Sbjct: 124 QPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + IDV I LR K+ YIETV+G GY + E Sbjct: 184 QAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFARPKRPE 231 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I++++D++A+ S+ L + V++ G + +E+ + + + +ILD+ + + G Sbjct: 1 MKIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR+ Sbjct: 61 EVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G+LS N D + V G I LT E+ +++LL L++ L Sbjct: 121 AESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V+I LR+K + G I TV G GYVLRE A Sbjct: 181 EEVWGYDFPTSGNALEVYIGYLRRKTESE-GEPRLIHTVRGVGYVLRETAP 230 >gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 244 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + + D ++LD+ + + G Sbjct: 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GDL +NL + V + LT E+ ++E+ LT+E Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A+G + TV G GYVLR Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEASGEPRLVHTVRGVGYVLR 240 >gi|304321358|ref|YP_003855001.1| two-component transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300260|gb|ADM09859.1| two-component transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 230 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 163/230 (70%), Positives = 198/230 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ GF Sbjct: 1 MRVLLIEDDGATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMTGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LRVAK++TP+ IL+G+ E+KVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKSLRVAKVNTPILILTGLGDTENKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVITTGALTVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A G++YIETVWGRGYVLR+ A++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATDGEHYIETVWGRGYVLRDPAEEVAA 230 >gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 132/230 (57%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD L + +L + V GEDG+ L + +DAI+LDLGL + G Sbjct: 1 MRALIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGLPKLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A +S PV IL+ +KV G +GADDY++KPF+ EEL+AR+RA+ RR+ Sbjct: 61 TVLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S ++ GDLS++ V + I LT E++M+ L ++ +++ + H+YD Sbjct: 121 GHSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + I+VF+ +LRKK+ + IETV G GY L + + E+ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGSN-----RIETVRGLGYRLVDPGETESS 225 >gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 227 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++DDK + + I++ L++E +N+ G + + + +FD +ILD+ + + G Sbjct: 3 INILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVMMPILDGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R + P+ LS DK++GL GADDY+SKPF EL+AR++A +RR + Sbjct: 63 SACIKIR-ENYTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYK 121 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 DL++N D V V+G ++ LT KE+ ++E L+ + + + Sbjct: 122 KFNVEPQNSSIVTIEDLTINFDTHEVTVRGDKVKLTPKEFDILECLARNRGMVFSVQKLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I V I LR+K+ Y++TVWG GY + Sbjct: 182 EIIWKEEFVVSDTSIVVHITNLRQKIEIDPKRPKYVKTVWGVGYKI 227 >gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RRS Sbjct: 69 VIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSTS 128 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL ++ +A V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ I T+ G GYVLR+ A Sbjct: 189 NYDFRGDDNIVESYISYLRRKV--DNTQPRLIHTLRGVGYVLRKPA 232 >gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVITGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222 >gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] Length = 236 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + S+ + + ++V+ G++ +E+ + Y +ILDL L + G E+ Sbjct: 9 VLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLMLPGMTGEEI 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R PV +L+ + ED + GL GADDY++KPF+ ++L AR+ AI+RR+ Sbjct: 69 CQAIRRQSRV-PVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL ++ V QG + LT E++++ + ++E + Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++ID I LRKKL YI+TV+G GY Sbjct: 188 VFGPDFDSYDRVIDTHIKNLRKKLETNPKNPVYIKTVYGLGYKF 231 >gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] Length = 237 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +A I+ L+ E+F+ V G ++L + D IILDL L + G Sbjct: 1 MKILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D+V GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120 Query: 119 SRGH---AQSLIVTGDLSVNLDAKTV-----EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S H ++ T V+LD + + + LT E+ ++ + Sbjct: 121 SLRHGGSQNNVYETPHFMVDLDKHSAVKKLEDNTEDTLELTTLEFNLLSTFMSYPGRVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ L+ + +++D + +LRKK+ +I+TV G GY + Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHVRRLRKKIEPDTANPTFIKTVVGVGYKFEDE 234 >gi|92118832|ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801726|gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis X14] Length = 233 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 169/229 (73%), Positives = 201/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEDEA 229 >gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I+ L +N+ V + G+ + L + + D +ILD+ L D+ GF Sbjct: 5 KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDINLPDVIGFN 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + ++ V +L+ + DK+RG GADDY++KPF EL R+ AI+RR R Sbjct: 65 LCQEMQSRNGVF-VLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + L ++ + V + + LT E+ ++ L+ + + + Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + +++DV I ++RKK+ A I+TV G GY Sbjct: 184 WDYEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227 >gi|299134363|ref|ZP_07027556.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591110|gb|EFI51312.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 233 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 170/229 (74%), Positives = 200/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE + DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSDDEA 229 >gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571] gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571] Length = 238 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237 >gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD +A ++ + + F Y+ G ++ + + D ++LDL L I G+EV Sbjct: 6 VLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLMLPGIDGWEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R R P+ +L+ D++ GL+ GADDY++KPF+ E+VAR+RAI+RRS Sbjct: 66 CRRAR-KIGDIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRSHKI 124 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G+L ++ + + + +T E+++++LL+ K ++ + + Sbjct: 125 AAQPEPIKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + IDV I +R+K+ N YI TV+G GY + Sbjct: 185 YASEGYERTIDVHIKNIRRKIENNPKEPKYIITVYGVGYKFAGD 228 >gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] Length = 229 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ + +++ L+ E + V+ GE+GI++ + + ++LD+ L + GF Sbjct: 4 KILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ + DK+ GLQ G DDY++KPFN EL RI+++ RR Sbjct: 64 VCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I+ ++ + I LT EYQ++++ + ++ L + Sbjct: 124 EEEIDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKIV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ YIETVWG GY + Sbjct: 184 WGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYRWQ 227 >gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius UCC118] gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius UCC118] gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 233 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 127/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++A+ ++ L+ + V + G D ++ ++D IILDL L I G E Sbjct: 3 KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R KI+T + IL+ DK+ GL+ GADDY++KPF+ E+VAR++A+ RR Sbjct: 63 ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + G+ VNLD+ + + + I LT KE++++ +K L +E Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN+++ + +++D+ + LR+K+ +++TV G GY + Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFEDE 233 >gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071] gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGYKFEP 223 >gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] Length = 231 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +L+ +E L+ V VTD G+ + LC +D I+D L + G Sbjct: 1 MRVLLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +++ALR A++ TP+ L+ + ++D+V GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 SLVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAV 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A I GD+ +NL + +G + L KE++++EL +T+ M L H Sbjct: 121 LKTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++D +P+ +++ I +LR KL G I+TV G GY L + + + Sbjct: 181 VWDIHFDPQTSVVETHISRLRNKLEK-PFGDTLIQTVRGVGYKLEQKSGE 229 >gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 234 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +++ D+ + V GH + + + +Q++ N +KE Sbjct: 125 QVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 233 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + L+ F V + G +E+ ++ I+LDL L ++ G E Sbjct: 5 KILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPELDGRE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR K + PV +L+ +++ G + GADDY+ KPF+ ELV R++A+++R Sbjct: 65 VCAQLRKQKDT-PVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVHQ 123 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L++NL+++ V G + LT KEY+++ L+ R T+E L Sbjct: 124 GPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELLR 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 +++ + + + +D I +LR+KL A+ I TVWG GY Sbjct: 184 DVWNYQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGYKFE 230 >gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ + ++LD+ L + G E Sbjct: 3 KILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +I+TVWG GY + Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226 >gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)] gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)] gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans] Length = 223 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 240 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L + V G + + + D ++LDL L + G E Sbjct: 12 RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLPGMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 72 VCRRMRGR-GPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LS++ A+ G + LT +E+ ++ +E + ++ Sbjct: 131 AEQSGALRAAGLSLDPQARRAVKNGTELALTIREFDLLAFFLRHPGRVFGREDLMREVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + V I +LR K+ + I+TVWG GY A+ Sbjct: 191 WDF-GDLSTVTVHIRRLRGKVEDDPARPRLIQTVWGVGYRFESAAE 235 >gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus iners AB-1] gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] Length = 234 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V GE+ ++ + D +ILDL L G E Sbjct: 4 KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + + + ++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVRQSHDLSIIMV-TAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G+L + +A VE G I LT +E++++ L+ +T+E L Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ +V+ +DV + +LR+K+ + + + T G GY +N DE Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYY-VKNPTDE 234 >gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 256 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256 >gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens TC1] gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens TC1] Length = 239 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + + + D +LD+ L D+ GF Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 72 VTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 132 LEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ I+T G GYVLR Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVLR 234 >gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 256 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+ + + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256 >gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 257 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 18/238 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------------KFYEFD--A 47 ++LL+ED++ + ++ L L E F V V D G+ +E+ + D Sbjct: 19 KVLLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISL 78 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 IILDL L + G ++ R +R I P+ ILS + D+V GL+ GADDY++KPF E Sbjct: 79 IILDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRE 138 Query: 108 LVARIRAIVRRSRGHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 L+AR RA++RR + + D++++ D V + + L+ KE++++ELL Sbjct: 139 LIARCRALLRRCQSQDKPNEKSILRFADIALHTDECRVFLGSTEVSLSPKEFKILELLLS 198 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++ ++ + K +DV I LR+KL G Y++TV G GY L Sbjct: 199 QPKRVWSRNQIIDQVWGYDFMGDNKTVDVHIRWLREKLEENPGQPKYLKTVRGFGYRL 256 >gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] Length = 223 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L G+ Sbjct: 1 MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE ++ I LRKK+ + + I TV G GYV A+DE Sbjct: 181 FDDEVFSDVLRSHIKNLRKKV-DKGFKRKIIHTVRGIGYV----ARDE 223 >gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ LA IEL LK E + V V G G+ + D I+LD L I G E Sbjct: 4 HILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR P+ +L+ I D+V GL +GADDYI KPF+ EEL+AR+RA +RR+ Sbjct: 64 ICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + DL +N ++ V I LT KE+ ++E L LT+E L ++ Sbjct: 124 NNADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL N K I+TV G GYVLRE Sbjct: 184 DFMGDSNIIEVYVRYLRLKLENN-QEKRLIQTVRGIGYVLRE 224 >gi|228957490|ref|ZP_04119243.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108678|ref|ZP_04238289.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126530|ref|ZP_04255544.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143826|ref|ZP_04272245.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639587|gb|EEK95998.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228656919|gb|EEL12743.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674819|gb|EEL30052.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802180|gb|EEM49044.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 236 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 68 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 127 QTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234 >gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] Length = 223 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL ED+ AL LK+E F V G + ++ ++D +ILD+ + I G Sbjct: 1 MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV +L+ ++ D+V GL +GADDY++KPF EL ARIRA++RR+ Sbjct: 61 TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+V + V G I L+ +E+ ++E L K L++ N ++D Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LRKK+ + K I TV G GY LRE Sbjct: 181 FGFEGGSNIVDVYIRYLRKKI-DDPFEKKLIHTVRGAGYTLREE 223 >gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 248 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++L+ E F+ V G + + + D I+LD+ L + G + Sbjct: 28 KILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMNGVD 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +LS + D V GL+SGADDYI+KPF +ELVAR+RA +RR Sbjct: 88 VCRAIR-KTSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GDL +++ V+ G I LT E+ ++ L+ R LT+E L ++ Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWGY 206 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++++V I +LR K+ I+ V G GY + E Sbjct: 207 KQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKIGE 248 >gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 131/225 (58%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA +++ +LK + V V GE G +L +D ILD+ L + G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++LRA+R A + TPV +L+ ++ED+V GL +GADDY+ KPF+ +EL+AR+RA R Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G ++L+ +TV G + LT KE+Q++EL N L+KE+ L+ ++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ ++ LRKK+ + +YI TV G GY+ + Sbjct: 181 GPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMFHPD 224 >gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ ++ + + ++LK E + V G G+ + + D IILD+ L DI G E Sbjct: 5 KILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDINGNE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + S P+ +L+ S I DK+ GL+ GADDY++KPF+ EL+ R++A++RR+ Sbjct: 65 VCKMVR-SNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ D+ +NL K + RI LT EYQ++EL + T+E L ++ Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D+ I +LRKK+ + + YI T +G GY + Sbjct: 184 GYDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCFK 226 >gi|229068774|ref|ZP_04202071.1| Two-component response regulator [Bacillus cereus F65185] gi|229177635|ref|ZP_04305012.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605825|gb|EEK63269.1| Two-component response regulator [Bacillus cereus 172560W] gi|228714391|gb|EEL66269.1| Two-component response regulator [Bacillus cereus F65185] Length = 236 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 68 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 127 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234 >gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 242 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPG 59 +L++EDD ++ ++ +L++E F V G + L D I+LDL L + G Sbjct: 15 LLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGG 74 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ R LR +TP+ ++S S D+V GL+ GADDY+ KPF ELVAR RA++RRS Sbjct: 75 LDLCRELRRINNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 134 Query: 120 RG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + V G + L+ KEY+++EL +++ Sbjct: 135 SQSETSAPQPHSFTHANLCLFPSECRVTRDGMDLTLSPKEYKILELFIQNPKRVWSRDQL 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+K+ I TV G GY Sbjct: 195 LEKIWGVDFIGDTKTVDVHIRWLREKVEQEPSSPQLILTVRGFGYRF 241 >gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus] gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 237 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ + + L+ E + VY G++G EL ++ D IILDL + G+E Sbjct: 4 RILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKNGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K + P+ +L+ +++ GL GADDY++KPF+ ELV RI+ I RR Sbjct: 64 LCEEIR-QKSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRRGSQ 122 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL + + V V + LT KE++++ L++ ++ Sbjct: 123 VSIQAKDSLLELIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++ E + V + +LR+KL +I T+WG GY N ++ET Sbjct: 183 LELIWGFEYEGVSNTVTVLVSRLREKLEKHTIKNRWIHTIWGIGYRFEPNERNET 237 >gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 119/221 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++++ +++ L+ N V GE+G++L +LD+ L I GF+ Sbjct: 3 KILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ DK+ GL+ GADDYI KPFN E+V RI+A++RR Sbjct: 63 VCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLGD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G ++L ++ V I +T KEY ++++ N T++ L+ ++ Sbjct: 123 EDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWGE 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + KIIDV I +LR K+ + A YIET+WG GY + Sbjct: 183 NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGYRWK 223 >gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] Length = 227 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD ALA I ++L++E +NV G+ +E + D ++LD+ L + G E Sbjct: 4 KVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ +L+ S D V GL++GADDY+ KPF +EL+AR++A +R Sbjct: 64 ICSLIR-QKSDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRGREE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDL V++ V G I LT E+ ++ L ++E L ++ Sbjct: 123 TTEEHVRLGDLVVDVSGHHVTRAGQPIQLTPLEFDLLVALGRSPWKVFSREELLETVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIERDPEHPEIVITVRGVGYR 221 >gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563] Length = 255 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/250 (29%), Positives = 132/250 (52%), Gaps = 29/250 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L+ E + V + G+ G+EL ++ D IILDL L + G + Sbjct: 3 KVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + LR KI+TP+ +L+ +K+ GL+ GADDY++KPF+ E++AR++AI+R Sbjct: 63 VCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRRATY 122 Query: 118 -------------------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152 + +I GD+ ++++ V V+G I +T Sbjct: 123 SVSSVDAENGVEEKHKITLTKDSVGNFKDEDVEIIKAGDIEIHVNDYVVYVRGESIEMTP 182 Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212 KE++++ ++ R N TL++E L L+ E +I+DV + LR+K+ YI Sbjct: 183 KEFELLTYMARRVNRTLSREQLLQKLWRFDYAGETRIVDVHVSHLREKIELDTKNPEYII 242 Query: 213 TVWGRGYVLR 222 TV G GY Sbjct: 243 TVRGFGYKFE 252 >gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] Length = 226 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F+ V G D + + ++ D I+LD+ L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ + D V GL+SGADDYI+KPF +EL+AR+RA +RRS Sbjct: 64 VCRTVR-EFSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPE 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G++ ++ V G I+LT E+ ++ L+ R ++E L ++ Sbjct: 123 EADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 GYRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGYK 223 >gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 227 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DDK + + L L+ E F+V G+ ++ + +ILD+ L I G Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLPGIDGIA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ DKV L+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 66 LCREVR-KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V+L V +G + LT KE +++ L N T++ L +++ Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+K+ + K + TVWG GY N Sbjct: 185 GYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227 >gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 225 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D++ ++L L+ E F V GE+G++ + +D +ILD+ L + GF Sbjct: 3 KLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R +R + P+ +L+ DK+ G++ GADDY++KPFN EL ARIRA++R Sbjct: 63 VCREIRT-FSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +N+ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580] gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580] gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] Length = 240 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ EN+ + + G++ I+ ++D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 68 VCRQVR-DKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYLNTDTTAKNVLVFSHLSIDHDAHRVMADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ I TVWG GY Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPKAAKKIVTVWGVGYKFE 236 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G + +++ DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 61 EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL+++ + V RI LT E+ ++E+L LT+ L Sbjct: 121 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 225 >gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 232 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 2/231 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD AL + ++ + F V +G + D ++LD+GL D GF+ Sbjct: 3 RLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +RV + P+ L+ V GL G DDYI+KPF EL++R+RA++RRS Sbjct: 63 LCRQIRVENGT-PILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 +V+G ++++ + V G I LT EY+++ LL + TLT+E L+ L+D Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G D + + V+I +LR K+ + +I TV G GY + E C Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYRWKAEEGGEACR 232 >gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 5/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L+ E + V GE ++L + D +I+D+ + + G E Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +++ P+ ILS + DK+ G + G DDY +KPF+ EL R++A++RR Sbjct: 66 SQKIKMKVDV-PIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ + + + V + G + LT KE+ M+ L++ N ++ L + Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + + V I +LR+K+ A I+TVWG GY + Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232 >gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 234 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E +++ G + +E K + +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 SMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ V G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+EDD +A + L L+ E + + G ++ + +DA+ILDL L ++ G Sbjct: 1 MKQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R +R PV I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR Sbjct: 61 LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120 Query: 120 RGHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + + A+TV + G + LT +E++++ + ++ L Sbjct: 121 QAMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++ I +LR K+ A I TVWG+GY E Sbjct: 181 EQVWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAE 228 >gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + F V GE+ I++ + + I+LD+ + + G+ Sbjct: 5 KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R P+ +L+ +D+++G + G D+YISKPF+ + LVAR+ AI+RRS Sbjct: 65 EVLKTIR-KYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSS 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ +I G + ++ A VE+ G + L+ KE++++ + + L++E LN++++ Sbjct: 124 PGAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ID + KLR KL YI+T+WG GY + Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGYKFEVES 225 >gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 226 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DDK + + L L+ E F V G+ + + +ILD+ L I G Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLPGIDGIA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R P+ +L+ DKV GL+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 66 LCKEVR-KFSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEG 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL V+L V +G I LT KE +++ L N T++ L +++ Sbjct: 125 ESEDKSVSYPDLYVSLSEYKVIYKGKNIDLTPKELELLYFLCTHPNRVFTRDQLLENVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+K+ K + TVWG GY N Sbjct: 185 YDYMGDSRTVDVHIKRLREKVGEGPNWK--LTTVWGVGYKFEVN 226 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD L + L E + + + G + + ++ +ILD+ L I GFE Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ SS DKV GL++GADDY+SKPF EL+AR++A++RRS+ Sbjct: 91 LCRLIRTESSV-PILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL + ++ V G + + KE+ + + + ++E L Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I LR+K+ ++ TV G GY E Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555] gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016] gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM 555] gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ ++S + V V + G+ Y+ D +ILD+ L +I G + Sbjct: 7 KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV GL+ GADDYI KPF +E++ARI+A++RR Sbjct: 67 VLKWIRKDYET-PVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L++++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + + +DV + +LR+KL GG N+ IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGYKFE 226 >gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus LMG 18311] Length = 235 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 VAKEIR-KTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA + +G+ + LT +E++++ L+ +T+ Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ + ++ L+ + + GE+G+ +D IILD+ L I G E Sbjct: 4 KILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKINGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + S P+ +L+ DK+ GL+ GADDY++KPFN EL AR++AI RR Sbjct: 64 VCRQVR-EQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + +L++N + +TV V G +LT KE+ ++E+L + ++E L Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++ +DV I +LR+KL I T WG GY + Sbjct: 183 VWKYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGYYFAQE 229 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + G + ++ DA+ILD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTVS 123 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++ + V G +I LT E+ ++E+L LT+ L + Sbjct: 124 DDSGDSQKMTFSDLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V+I LR+K + A G I TV G GYVLRE Sbjct: 184 WGFDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 227 >gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222 >gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 232 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++A+ ++ L+ ++V + G ++L + ++DA++LDL L ++ G Sbjct: 3 RILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVDGMS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R I PV +++ D++ GL+ GADDYI+KPF+ E++AR++A++RR Sbjct: 63 VLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYHE 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + DL ++ K V+ G + LT +EY+++ + R + +E L Sbjct: 123 QSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++D+ I LR+K+ ++TV G GY + + Sbjct: 183 TSVWGYDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGYTMSD 230 >gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDDK ++ ++ L EN+ V G++ + +F I+LDL + I G + Sbjct: 5 KILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMIPKINGMD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ +R P+ I+S S DK GL GADDYI+KPF+ E++ARI+A +RR Sbjct: 65 VMQHIR-EHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q G+L +NL T+ G R+ LT KEY++++LL TKE Sbjct: 124 YDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + ++V I +LR K+ YI TVWG GY L EN Sbjct: 184 ALVWKDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGENV 233 >gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 117/221 (52%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L E ++ G++ +++ + + D +I+D+ + ++ G+E Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ +KV+G GADDY+ KPF+ ELVAR++A+++R R Sbjct: 63 LCRELR-DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G LS+N + + L KE++++ L+ T T++ + ++ Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ + +I T+ G GY L Sbjct: 182 DYEGDERTVDVHIKRLRERFAQ-PNAPFFIRTIRGLGYRLE 221 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ + G + L FD +ILD+ + + G Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R I+TPV IL+ DK+ GL+ GADDY+ KPF+ ELVAR++A++ R+ Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G+L+++ + TV V G + LT KE+ ++ L+ K L++E L + Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +D + LR L G YI TVWG GY +A Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 297 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L + L +E+++V GE ++ E+D +ILD+ + G Sbjct: 1 MRILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R PV +L+ S+ED+VRGL +GA+DY+ KPF EEL+ARIR ++RR Sbjct: 61 SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G L V++D V G I L+GKE+ ++ + K L++E HL++ Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +IDV+I LRKK+ + + I TV G GYVL+E Sbjct: 181 YDYAGGSNVIDVYIRYLRKKI-DEPFEEKLIHTVRGAGYVLKEKV 224 >gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 238 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + + G G+ + + +DA+ILDL L I G + Sbjct: 6 RILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLPGIDGLD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ ++S SS +V GL+ GADDY++KPF+ EL AR++A+ RR Sbjct: 66 ICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQEA 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L + L+++ A+ V + I LT +E+ ++ + + ++ L Sbjct: 126 MSRNLQMDAGRLDMAGLTIDPIARAVWMNQQPIDLTPREFDLLYFFAKNPDKVFSRLQLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + ++ I +LR K+ YI TVWG GY Sbjct: 186 DQVWGYQHDGYEHTVNTHINRLRIKIEADPSEPQYILTVWGSGYKF 231 >gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 235 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 15/235 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + ++ L+ F V G++ +E D ++LDL L +I G E Sbjct: 3 KILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDGME 61 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + + +L+ +++ GL+ GADDY++KPF+ EL+ARI+AI RR Sbjct: 62 VCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFRRM 121 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +I+ GD +++ V+ + I LT KE++++ L L + L++ Sbjct: 122 EELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLSRN 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + L ++ + + +DV I +LRKK YI+TV G GY + D Sbjct: 182 LLLEKIWGYEYAGDTRTVDVHIRRLRKK-----SSSEYIKTVRGVGYKFVKVETD 231 >gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 237 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++D++A+ + ++L+ E F V+ G D + L + +FD IILD+ L D+ G Sbjct: 5 RILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILDIMLPDLSGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115 E+ RA+R P+ +S SS DK+ G G DDYI+KPFN E+VAR++A Sbjct: 65 EMCRAIR-KGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ ++ G +NL A + V+G + + + Y+++ N TKE Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I K+R+K+ Y++T+ G GY L K Sbjct: 184 YQVWGEDQLVDDNTVMVHIRKIREKIEKDPSKPQYLKTIRGIGYKLVTEEK 234 >gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+++D+K + ++ L+ E + V G++ ++ K E+D ++LDL L + G+ Sbjct: 1 MKALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR++ Sbjct: 61 EVCQQIR-EFSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNK 119 Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I +G L ++++AK + ++ I LT KE+ +++LL+ +E Sbjct: 120 RKAPAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + + + +DV + +LR+K+ YI T WG GY + Sbjct: 180 LTLIWGSKYPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYFQ 227 >gi|154252621|ref|YP_001413445.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156571|gb|ABS63788.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 235 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 162/226 (71%), Positives = 198/226 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LRV KI+TP+ ILSG++ IE+KVRGL GADDY++KPF+K+ELVARI A+VRRS+ Sbjct: 61 EVLKSLRVGKITTPILILSGLAGIENKVRGLGFGADDYMTKPFHKDELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVINTGKLTVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ + GG +YIETVWGRGYVLR+ A+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASTGGDHYIETVWGRGYVLRDPAE 226 >gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13] Length = 239 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L+ EN+ + D G +E+ E+D I+LD+ + + G E Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGME 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCKEIR-EKKATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V +G I+LT KEY+++ L+ + +E Sbjct: 125 TTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGYKFE 234 >gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 239 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 124/236 (52%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + + + L+ EN+ + G + +EL +D I+LD+ + + G Sbjct: 5 IRILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPEKDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +A+R K +TPV +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 65 EVCQAIR-EKKATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRTS 123 Query: 121 GHAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + V L+++ DA V ++LT KEY+++ L+ + Sbjct: 124 TQSSYIPAEATSKDLLVFPHLTIDHDAHKVLADDMEVNLTPKEYELLHFLAKSPEKVFDR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAK 226 E L ++ +++ +D + +LR+KL+ + I TVWG GY ++ Sbjct: 184 EQLLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSEQSAKMIVTVWGVGYKFEVGSE 239 >gi|228951584|ref|ZP_04113689.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229149424|ref|ZP_04277660.1| Two-component response regulator [Bacillus cereus m1550] gi|228634066|gb|EEK90659.1| Two-component response regulator [Bacillus cereus m1550] gi|228808149|gb|EEM54663.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E + V + GE+ + K +FD I++D+ + I GFE Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R +TP+ L+ + +DK++G SG DDYI+KPF+ EL R+ AI+RRS Sbjct: 64 AIKVIR-KFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNV 122 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L T+ I LT KE+ ++ LL+ K Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGEGEITLTPKEFDILCLLARNKGRVFPSSELYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KL++ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+ F+V D GE + L + Y D ++LD+ L D+ GFE Sbjct: 12 RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR V L+ + DKV GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 72 VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGS 131 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL +N D+ V G + L+ E++++ L L N ++K L+H++ Sbjct: 132 TVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D E I++ +I LR+K+ A G I T G GYVLR + Sbjct: 192 DYDFRGESGIVESYISYLRRKI--DADGPPLIHTKRGVGYVLRVPPE 236 >gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 238 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + L+ E + + + GE ++ ++ I+LD+ L + G E Sbjct: 7 RILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR STPV +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RRS Sbjct: 67 VCTRLR-QTKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV +L + DA V G I LT KEY+++ L++ + ++E Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLE 235 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I++++D++A+ S+ L ++V++ + G +E+ + + + +ILD+ + + G Sbjct: 1 MKIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR+ Sbjct: 61 EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 121 GHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G+L+ + D + V G I LT E+ +++LL L++ L Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V+I LR+K + G I TV G GYVLR+ A Sbjct: 181 EEVWGYDFPTSGNALEVYIGYLRRKTESE-GEPRLIHTVRGVGYVLRDTAP 230 >gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 235 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E +++ G + +E + ++ +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 AMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ TV G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L+ E + + GE+ +EL E+D I+LD+ + + G E+ Sbjct: 7 LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVEM 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 + LR K + PV +L+ ++V+G + GADDYI KPF+ E+V R++A++R Sbjct: 67 CQELRKKKAT-PVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASAT 125 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + ++V G L+++ DA V V I LT KEY+++ L+ + ++E Sbjct: 126 KFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ I TVWG GY Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGYKFE 234 >gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] Length = 233 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDDK ++ ++ L EN+ V G++ + +F I+LDL + I G + Sbjct: 5 KILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMIPKISGMD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ +R P+ I+S S DK GL GADDYI+KPF+ E++ARI+A +RR Sbjct: 65 VMQHIR-EHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q G+L +NL T+ G R+ LT KEY++++LL TKE Sbjct: 124 YDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + ++V I +LR K+ + YI TVWG GY L EN Sbjct: 184 ALVWKDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGENV 233 >gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 258 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD++++ ++ L E F+V GE+GI+L + FD I+LDL L + G ++ Sbjct: 32 ILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLMLPKLNGMDL 91 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R + PV I+S +K GL GADDYI+KPF+ EL AR++A +RR+ + Sbjct: 92 LKIIR-EQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQY 150 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I +L+++++ + + I LT KE+Q+I+LL T+E Sbjct: 151 AVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIYR 210 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 211 SVWNEDYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 257 >gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + + G++ I +D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQVR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYLNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++LKSE F + G+ +E + D I+LDL L G E Sbjct: 4 RILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V+GL+SGADDY+ KPF +ELVAR+RA +R S Sbjct: 64 VCREIREESGV-PIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GD+S+++ TVE G + LT E++++ L+ + ++E L ++ Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGYK 221 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G + +EL DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + DL+++ + V RI LT E+ ++E+L LT+ L Sbjct: 121 PEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GESRLIHTVRGVGYVLRE 225 >gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + S+E L+ F V G D + + DA++LD+ + + G Sbjct: 6 KILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGTG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR A P+C+LS +S++D++ GL+SGADDY+ KPF ELVARIRA++RRS Sbjct: 66 VVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSNT 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G+L ++L + V V G + LT +E++++E+L+ LT+E L Sbjct: 126 PAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++DVFI LR+K + G + TV G G+VLREN Sbjct: 186 ELVWGYDFVADTNVVDVFIGYLRRKFE-SGGSPRLLHTVRGVGFVLREN 233 >gi|218234767|ref|YP_002365906.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162724|gb|ACK62716.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QTIPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42] gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42] gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens LL3] Length = 240 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + + G++ I++ ++D ++LDL + G E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQLR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ G I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEVGAE 240 >gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 225 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA IEL LK E +N+ V + G G+ + D I+LD L I G E Sbjct: 5 RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR P+ +L+ I D+V GL +GADDYI KPFN EEL+AR+RA +RR++ Sbjct: 65 ICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNKE 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ DLS+N + + V I LT KE+ ++E L L+++ L ++ Sbjct: 125 ENPDLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL A K I+TV G GYVLR+ Sbjct: 185 DFMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225 >gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 256 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + + L++E + VY G + D +ILD+ L + GFEV Sbjct: 23 ILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGMDGFEV 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + L+ S DK+ GL GADDY++KPF+ EL AR++ I+RRSR Sbjct: 83 -CRRIQQDFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSRTP 141 Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +++ TV G I LT +E+ ++ +L+ ++ Sbjct: 142 GPRVHTHQPIERPALRFEQFTIDPGCYTVWRDGEAIILTPREFDLLYVLAEYAGRVCNRD 201 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +++DV I +LR+K+ I+T+ G GY L Sbjct: 202 QLLERIWGSNFAGIDRVVDVHIKQLRRKIEVDPSNPQIIQTLRGVGYRLV 251 >gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I+ L +N+ V + G+ + L + + D +ILD+ L D+ GF Sbjct: 5 KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDVNLPDVIGFN 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + ++ V +L+ + DK+RG GADDY++KPF EL R+ AI+RR R Sbjct: 65 LCQEMQSRNGVF-VLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + L ++ + V + + LT E+ ++ L+ + + + Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + +++DV I ++RKK+ A I+TV G GY Sbjct: 184 WDYEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227 >gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] Length = 244 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V GE+ ++ + D +ILDL L G E Sbjct: 14 KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + + + ++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 74 VAREVRQSHDLSIIMV-TAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G+L + +A VE G I LT +E++++ L+ +T+E L Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + + + T G GY ++ + Sbjct: 193 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE 244 >gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+++++ + +L E ++V V G + + D ++LDL L G E Sbjct: 3 RILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGASGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR+ Sbjct: 63 VCRQLRAKSKV-PIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRRNTE 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++++ V+G + L KE++++E+L +T+ ++ + Sbjct: 122 SSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLIDRI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ + TV G GY Sbjct: 182 WGQDYVGDTKTLDVHVKRLRAKIEETPSEPKLLVTVRGLGYKFE 225 >gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 234 >gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D ++ Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A DL ++L + V G ++ LT E+ ++E+ LT+E Sbjct: 132 AAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQVLTRE 191 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245 >gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + G D +E Y+ + I+LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR ++ PV +L+ ++ D+V GL +GADDY+ KPF +EL+ARIRA++RRS Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + + GDL ++L + V G R+ LT E+ ++E+ LT+E Sbjct: 132 AAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ EP +DV++ LR+K + AAG + TV G GYVLR A+ E Sbjct: 192 ILKAVWGFEFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRP-AEGEPS 246 >gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D+ L I L L+ + + V G +E FD I+LDL L + GF Sbjct: 1 MRVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV +L+ ++ +V+GL GADDY+ KPF+ EL+ARIRA++RRS Sbjct: 61 TVLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++ ++ + + V + + LT KE+ ++E L +N +++ H++ Sbjct: 121 EQISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWG 180 Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +P IDV I +RKKL++ G I TV G GY+ AKDE Sbjct: 181 DAFDPFTMSNNIDVHIKNVRKKLNDQGG--RIIVTVRGVGYM----AKDEQA 226 >gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 227 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A IE+ LK++ + + G + ++ + D I+LD+ + + G E Sbjct: 3 RILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ ++S + DK+ GL +GADDY+ KPFN EL AR++A++RR+ Sbjct: 63 FCKYVR-KNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRANY 121 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G ++++ + V +G I LT +E++++ LL+ + E Sbjct: 122 KTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ E K + V I +R+KL A G++ I+TVWG GY + + Sbjct: 182 VWNEPGEGSNKTVMVHISNIREKLEAALPGESVIQTVWGVGYKIEK 227 >gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus] Length = 267 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 6/239 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L + V D G + + D ++LDL L + GFE Sbjct: 19 RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPAMDGFE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ ED++ GL++GADDY++KPF+ ELV R+ +++RR+R Sbjct: 79 VCRRMR-EHGPVPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVLRRARA 137 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + G LS++ ++ GH + LT +E+ ++ L +E + Sbjct: 138 AAPADGTGPLSGGGLSLDPASRQASRDGHGLALTLREFDLLAFLLRHPGRAFGREELMRE 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 ++ ++ + V I +LR K+ + I TVWG GY L + E +A Sbjct: 198 VWGWDF-GDLSTVTVHIRRLRGKVEDDPARPRLIRTVWGVGYRLDLAPESPGTEARPSA 255 >gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRSRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 230 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ LA +E L + V V G + + D ++LD L I G E Sbjct: 10 HILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLPGISGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR+ PV +++ + D+V GL +GADDY+ KPF+ +EL+ARIR ++ +G Sbjct: 70 VCRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPKG 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S +V DL+++ + ++ LT KEY ++ L LT++ L H++ Sbjct: 130 SGDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGY 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR K+ G K I+TV G GYVLRE Sbjct: 190 DFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVLRE 230 >gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ A ++ L +E F V G +G+ + +D ++LD+ L ++ G+ Sbjct: 1 MRLLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPELSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A+ TPV +L+ D+ GADDY+SKPF+ L+AR+RA++RR Sbjct: 61 EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ A+TV RI LT +E+ ++E L R L+K L+H++D Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V+I LR+K+ +A G + IETV G GY L + Sbjct: 181 AHYDGDENVVEVYIGYLRRKI-DAPFGTHTIETVRGVGYRLVD 222 >gi|259416014|ref|ZP_05739934.1| cell cycle transcriptional regulator CtrA [Silicibacter sp. TrichCH4B] gi|259347453|gb|EEW59230.1| cell cycle transcriptional regulator CtrA [Silicibacter sp. TrichCH4B] Length = 239 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 158/227 (69%), Positives = 188/227 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ +D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGDNYIETVWGRGYVLRDPQED 227 >gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+G+E + ++ + +ILD+ L + G E Sbjct: 3 KILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + KI+DV I +LR K+ +I TVWG GY + Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGYRWQ 226 >gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +N + + V GH + + + +Q++ N +KE Sbjct: 125 QTVPHEQKPHSISFGRFEINQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 235 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E +++ G + +E + + +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 SMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ TV G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIHEYGDVKFDINNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 224 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 127/222 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ L+++N+ + V GE G E + +E+D I+LD+ L + G Sbjct: 1 MRILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R A + PV +L+ S +DKV GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ LS+N + V H +HLT KEY ++EL ++ L HL+ Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P + + V I +R+KL + IETV+G GY L+ Sbjct: 181 FEDPPSEEAVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRLK 222 >gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 237 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ EN++V + GE ++ Y++D I+LDL + + G E Sbjct: 6 RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCEKIRKQ-KATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A L+++ DA V I LT KEY+++ L+ + +E Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ N I TVWG GY Sbjct: 185 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGYKFE 234 >gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + ++ L + V GE+ +E + ++D I+LD+ L + G Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ AR++AI+RR+ Sbjct: 73 VCQQIR-EFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + GD+ ++ D++++ + I+LT KE+ ++E+L++ +++ L Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +DV + +LR+K+ N Y+ T WG GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 245 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ + V G I LT +E+ ++ + ++ L Sbjct: 126 LAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 N ++ + E ++ I +LR K+ I TVWGRGY L + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKLAVPGE 236 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M+IL+++DD+A+ S+ L + V + G + + DA+++D+ + + G Sbjct: 3 MQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRLDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E + LR P+ +L+ ++ D+V GL +GADDY+ KPF+ EEL+AR+RA+ RRS Sbjct: 63 LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122 Query: 120 RGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R +Q D++++ + V G RI LT E+ +++ L + LN Sbjct: 123 RPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V+I LR+K G I TV G GYVLRE A Sbjct: 183 EVWGFDFPATANSLEVYIGYLRRKTEQE-GEPRLIHTVRGVGYVLRETAP 231 >gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 240 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + + + D ++LD+ + + GF Sbjct: 13 RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGFG 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V+R LR + TPV L+ + EDKV GL G DDY++KPF+ +E++ARIRA++R Sbjct: 73 VVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRRSTG 132 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + D+ ++ ++ V G + L+ E++++ L L+K L+H Sbjct: 133 PQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKAQILDH 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++ +I LR+K+ + T+ G GY LR Sbjct: 193 VWNYDFNGDANVVESYISYLRRKV--DTTEPRLLHTIRGVGYTLR 235 >gi|325002312|ref|ZP_08123424.1| two component response transcriptional regulatory protein MprA [Pseudonocardia sp. P1] Length = 232 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DDKA+ S+ L + V + + G+ ++ DA++LD+ + + G Sbjct: 1 MRILVVDDDKAVRDSLRRSLAFNGYQVDLAEDGQAALDRMLTDRPDALVLDVMMPRVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRV 120 Query: 121 GHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 DLS++ D + V G I LT E+ ++ELL LT+ Sbjct: 121 PDTDDGADPPSAALTFADLSLDPDTREVSRGGRSISLTRTEFSLLELLLAHPRRVLTRGQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V++ LR+K G I TV G GYVLRE+ Sbjct: 181 ILEQVWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRESPP 232 >gi|293376013|ref|ZP_06622270.1| putative transcriptional regulatory protein CutR [Turicibacter sanguinis PC909] gi|325841065|ref|ZP_08167248.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1] gi|292645369|gb|EFF63422.1| putative transcriptional regulatory protein CutR [Turicibacter sanguinis PC909] gi|325490082|gb|EGC92426.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1] Length = 224 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 131/221 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+K + +++ L+ E + V VT GE+ +EL F ++ ++LD+ L I GF Sbjct: 1 MRLLIIEDEKDILLALQKGLQKEGYAVDVTGDGEEALELLNFNTYNLVVLDINLPSIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR ++T V I+S IEDK+RGL GA+DY+ KPF+ EL ARIRA++RR Sbjct: 61 SILEILREKDMTTRVIIVSANREIEDKIRGLDLGANDYLVKPFDFSELKARIRALLRREF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G+L ++L V ++LT KEY +++ L K ++ E + H++D Sbjct: 121 TSVPTIIKEGELCLDLATHKVTFNDQILNLTLKEYSILKYLIQNKGRIVSSEELIQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I V I LRKKL +G N I+T+ G GY+ Sbjct: 181 ENADPFTTVIRVHIYSLRKKLITISGKDNIIQTIKGVGYLF 221 >gi|218896157|ref|YP_002444568.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218545429|gb|ACK97823.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G ++ + + V GH + + + +Q++ N +KE Sbjct: 125 QAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I LK E ++V G++ ++ E+D +I+D+ + ++ G Sbjct: 1 MKILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR PV L+ + S +DKV GL SG DDY+ KPF +EL+ARIR+++RRS Sbjct: 61 TLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++ V G I LT KE+ +++ L + T L++E L H Sbjct: 121 AQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E ++DV+I LRKK+ + TV G GYVL+ Sbjct: 181 WDFSYEGYSNMVDVYIKTLRKKIDRDF-EPKLLHTVRGTGYVLK 223 >gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 244 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V GE+ ++ + D +ILDL L G E Sbjct: 14 KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + + + ++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 74 VAREVRQSHDLSIIMV-TAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G+L + +A VE G I LT +E++++ L+ +T+E L Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ +V+ +DV + +LR+K+ + + + T G GY +N DE Sbjct: 193 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYY-VKNPTDE 244 >gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+++LA + +L+ E F V G + + D ++LDL L + G + Sbjct: 3 HVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAD 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 TAGGEGLDDGVLEGGPVRMDVERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPKHLVTVRGLGYKLEP 229 >gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ + + L++ + V ++ G++G++ + D +ILDL L D+ G E+ Sbjct: 5 VLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEI 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + P+ +L+ S DKV GL+ GADDYI+KPF+ EL+ARI+A++RR++ Sbjct: 65 CKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I GD+ ++ V +G + LT KE+++++LLS LT++ L+ Sbjct: 125 QPDEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + +DV I LRKK+ + YIETV G GY L + + Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLNDKGE 233 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + G + ++L DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTTP 123 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DLS++ + V I LT E+ ++E+L LT+ L Sbjct: 124 DDGAGESAAMTFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRILEE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 184 VWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 228 >gi|30261228|ref|NP_843605.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526390|ref|YP_017739.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184060|ref|YP_027312.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318498|ref|ZP_00391457.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871824|ref|ZP_02216467.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635393|ref|ZP_02393707.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640233|ref|ZP_02398499.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688103|ref|ZP_02879315.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707629|ref|ZP_02898081.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654173|ref|ZP_02936146.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566754|ref|ZP_03019671.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227816035|ref|YP_002816044.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603977|ref|YP_002865651.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682711|ref|ZP_05146572.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254734129|ref|ZP_05191842.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740227|ref|ZP_05197919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753567|ref|ZP_05205603.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758664|ref|ZP_05210691.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254842|gb|AAP25091.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501538|gb|AAT30214.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177987|gb|AAT53363.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712401|gb|EDR17935.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511834|gb|EDR87214.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529221|gb|EDR91974.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127404|gb|EDS96279.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667998|gb|EDT18749.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172080880|gb|EDT65960.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562306|gb|EDV16274.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006114|gb|ACP15857.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268385|gb|ACQ50022.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L + ++D IILD+ L GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V G + + + +Q++ N +KE Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWEAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 51 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 110 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 111 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 169 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 170 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 229 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 230 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 279 >gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DDK L + ++L L+ E F+V + G+ G E + Y ++ +ILD+ L ++ G+EV Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R + + P+ +L+ +DK+ GL+ GADDY+ KPF+ ELVAR+RA++RR + Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL+V+ + V V+ + + L KE++++ LL T+E L + Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D + ++RKKL +G + I+TVWG GY Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229 >gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 238 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 149/224 (66%), Positives = 184/224 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ ++ +IE MLK+E V T LGEDG+E+ K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLVVEDDQLMSRAIESMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+I TPV ILSG+S + K++GL SGADDY++KPF+K ELVARI+AIVRRS+ Sbjct: 61 EVLRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG LSVNLDA+TV V G +HLT KEY ++ELLSLRK TLTKE FLNHLY Sbjct: 121 GHAQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ Sbjct: 181 GIDEPELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRDP 224 >gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 232 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 166/227 (73%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELML+SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLQSEGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LRV+K+STP+ ILSG++ I+DKVRGL GADDY++KPF+K+ELVARI+AIVRRS+ Sbjct: 61 EVLKTLRVSKVSTPILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTV+V G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL A GGK+YIETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLQTATGGKHYIETVWGRGYVLRDPGHE 227 >gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + +L++E F V + G + + + +ILD+ + ++ G E Sbjct: 4 KILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVMMPEMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R + PV ILS ++ DK G DDY+SKPF+ E+ R++A+++R R Sbjct: 64 FLKKIRPQFDT-PVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKRYRK 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q ++ G+L +N D+ + G I LT +E++++ +L L++E L Sbjct: 123 VEKSSAAQDIVKIGELEINFDSYQLFAGGEEIDLTPREFKLLGILMRNAGMVLSREQLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D ++ +I+VF+ +LR+K+ Y++TVWG GY + Sbjct: 183 LADDREYFGDLNVINVFVRRLRQKIEKDPANPKYLQTVWGVGYKFSK 229 >gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus] Length = 235 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 IVKEIR-KTSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA + +G+ + LT +E++++ L+ +T+ Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + +++ L E F V G + + L K +D ++LDL L + G Sbjct: 3 KILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R PV IL+ D+V GL+ GADDYI KPF+ E+VAR++A++RR Sbjct: 63 ICKEIR-KFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +L DL +N +++ V V+G I LT +E+ ++ L+ ++E L Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +++ +D I +LR KLS G + I TVWG GY Sbjct: 182 TNVWGYDYFGDLRTVDTHINRLRDKLSVN-GARQPIATVWGVGYKFE 227 >gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] Length = 233 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGNDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 234 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ + + L++ + V ++ G++G++ + D +ILDL L D+ G E+ Sbjct: 5 VLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVDGLEI 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + P+ +L+ S DKV GL+ GADDYI+KPF+ EL+ARI+A++RR++ Sbjct: 65 CKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GD+ ++ V +G + LT KE+++++LLS LT++ L+ Sbjct: 125 QPEEEKEEIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + +DV I LRKK+ + YIETV G GY L + + Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLNDKGE 233 >gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545] Length = 234 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS+ Sbjct: 63 VAKTIR-KTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV + +LR+K+ + YI T G GY +R NA Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234 >gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 234 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 234 >gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 234 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E ++ G + +E + ++ +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 SMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ TV G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D++A+A I+ + E + V + G + + K + I+LD+ + + GF Sbjct: 3 IKILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMPKLNGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ +R TPV +L+ DKV GL+ GADDY+ KPF+ EL+AR++A++RR Sbjct: 63 DTLKEIR-KSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRRFG 121 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I G+L ++++ V+ G I LT +E+++++ LS ++E Sbjct: 122 PPTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSREEL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L +++ +++ +DV I +LR+K+ + + YI T G GY K Sbjct: 182 LEKVWEYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGYYFDGEVK 233 >gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] Length = 237 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F V GE+ ++ + D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I G+L + DA VE G +I LT +E++++ L+ +T+E Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L + +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 HLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE 237 >gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225 >gi|86138408|ref|ZP_01056982.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193] gi|85824933|gb|EAQ45134.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193] Length = 239 Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats. Identities = 158/228 (69%), Positives = 188/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG ++K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKIAVNLDAKTVEVDSKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ +D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQEDQ 228 >gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 236 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A + + L E ++V G G+ + + A++LDL L + G E Sbjct: 6 RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 66 ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G LS++ A+ V G + LT +E+ ++ + + ++ L Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N ++ R + ++ I +LR K+ I TVWGRGY L E+A Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 126/235 (53%), Gaps = 15/235 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++AL ++E LK + + V V G ++L + ++ + I+LD+ L + GFE Sbjct: 4 KILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + PV +L+ + D+V GL+ GADDY++KPF+ EL+AR++A++RR R Sbjct: 64 LCRRLRQEMNT-PVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122 Query: 122 HAQSLIVT--------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + + + G+L +NL + V + G + + KE++++ L + Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+++ L L+ + + +DV I LR+K+ I TV G GY Sbjct: 183 VLSRDYLLKELWGWDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGYRFE 237 >gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus pseudintermedius ED99] Length = 233 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+V G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYT 122 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + +YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGYFLQQH 232 >gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] Length = 237 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+K + +E+ L +E + V G++ +++ + + D ++LD+ + + G E Sbjct: 10 KILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVNGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +LS S DK++GL +GADDY++KPFN E R++A++RRS Sbjct: 70 VCKKVR-QNKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYY 128 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L+++ V G I LT +E+ ++ L++ K + E Sbjct: 129 LNNNNSSEESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEI 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR KL G+ I TVWG GY + + Sbjct: 189 FEKVWKEKYFQSNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIEK 237 >gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 6/234 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD+ +A + L L+ E + + G+ + + +DA+ILDL L + G E+ Sbjct: 5 ILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVDGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 65 CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124 Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+L++ LS++ ++ V+++G + LT +E+ ++ + ++ L Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLALLE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++ + E ++ I +LR K+ + I TVWG+GY +++ Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKFAPMSQEVAP 238 >gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC] gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112] gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC] gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAANQEEPDKNIKIGNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++ +V+ +DV + +LR+K+ N + T G GY +++ ++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIENNPIQPQVLVTRRGVGYYVKQPSE 237 >gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus helveticus H10] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237 >gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 226 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L ++ F V GE+ ++ + ++LD+ + + G+ Sbjct: 5 KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV +L+ S D+++G G D+YISKPF+ + LVAR+ AI+RRS Sbjct: 65 EVLKTIR-KYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + ++ A V + G I L+ KE++++ + L++E LN++++ Sbjct: 124 VVSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ +YI+T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG---DYIKTIWGMGYKFE 222 >gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 230 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 2/232 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA + L+ E F V GEDG+ FD I+LD+ L + G+ Sbjct: 1 MRVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR +I TP+ +L+ D+ GADDY+ KPF+ LVAR+RA+VRR Sbjct: 61 EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDLS++ + V + LT +E+ ++E L +T LTK + L +++D Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + + I++V+I LR+K+ +A G + I+TV G GY L A+ E+ Sbjct: 181 AHYDGDENIVEVYIGYLRRKI-DAPFGAHTIDTVRGVGYRLT-TARPESPAG 230 >gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus CNRZ1066] Length = 235 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ I+ L E + V G + +E + + D +ILDL L ++ G E Sbjct: 3 KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R TP+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 IVKEIR-KTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA + +G+ + LT +E++++ L+ +T+ Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] Length = 231 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+A+ S+ L + V + GE+ ++L D ILD+ + G Sbjct: 1 MKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V R LR P+ +L+ S+E++V GL +GADDY+ KPF EEL+AR R++ RR Sbjct: 61 DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 120 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + + DL++N + + V +I LT E+ ++ELL L++ Sbjct: 121 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K I TV G GY LRE A Sbjct: 181 LEEVWGYDFPTSGNALEVYIGYLRRKTEAN-NETRLIHTVRGVGYALRETAP 231 >gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 227 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DDK + + L L+ E F+V G+ ++ + +ILD+ L I G Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ DKV L+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 66 LCREVR-KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V+L V +G + LT KE +++ L N T++ L +++ Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+K+ + K + TVWG GY N Sbjct: 185 GYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227 >gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6] gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6] Length = 235 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R S P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ + +++ L+ E + V GE+G++ + D ++LD+ + + GF Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ IED+V GL +GADDY+ KPF+ +EL+AR+RA++RR + Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ G++ +++ +T +H T KEY M+ LLS +++E FL+ ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P + +D I LR K+ + +I+TV G GY L Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >gi|331694656|ref|YP_004330895.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949345|gb|AEA23042.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 233 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 9/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V + G+ ++ + DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 EVCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRT 120 Query: 121 GHAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + G + D + V I LT E+ ++ELL LT+ Sbjct: 121 PDEIAAAAAGASKPLEFADLSLDPDTRDVRRGDRPISLTRTEFSLLELLLAHPRRVLTRA 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K + A G I TV G GYVLRE+ Sbjct: 181 QILEQVWGYDFPTTGNALEVYIGYLRRK-TEAGGEPRLIHTVRGVGYVLRESPP 233 >gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 235 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E ++ G + +E + + +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ ELVAR++ +RR+ Sbjct: 65 SMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ TV +G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKRGKELTLTAKEIKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + IETVWG GY L Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|228919942|ref|ZP_04083297.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839758|gb|EEM85044.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 236 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 68 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G ++ + + V GH + + + +Q++ N +KE Sbjct: 127 QTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234 >gi|228964165|ref|ZP_04125288.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795515|gb|EEM42999.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 68 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G ++ + + V GH + + + +Q++ N +KE Sbjct: 127 QAVPHEQNSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ + V + G + +E + + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +S + DL ++ D + V G I LT E+ +++LL L++ Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ ++V+I LRKK G I TV G GYVLRE+ Sbjct: 181 ILEEVWGYDFPTSGNALEVYIGYLRKKTEGE-GDARLIHTVRGVGYVLRES 230 >gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16] Length = 237 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F V GE+ ++ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I G+L + DA VE G +I LT +E++++ L+ +T+E Sbjct: 123 VQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L + +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 HLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE 237 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ + + + D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 71 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEK 129 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 TSTSGIPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEIL 189 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 190 EQVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 238 >gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] Length = 241 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 6/235 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + ++ L+ EN+ V G+ +E + + FD +ILDL L + G Sbjct: 7 RILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRAIR-DVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAHK 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G L++++ + ++G + LT E++++ L+ ++ + + Sbjct: 126 ESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231 E + ID + LR KL + +++ TV G GY NA +T E Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPHWLFTVHGVGYRFEAAPNAYSDTAE 240 >gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + IE+ LK+E + V G + +E+ + D IILD+ + + G E Sbjct: 6 ILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIMMPKMDGIEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R + P+ +LS + DK+ GL SGADDY+ KPFN EL+AR+++ +RR + Sbjct: 66 CLNIR-KNRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYKKL 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I +L+++++ V++ I+LT +E+ ++ LL+ + E Sbjct: 125 NVGSENKEGVIEIDNLTIDVNTHEVKLDNREINLTAREFDILLLLARNRGIVFNTEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I +R+K+ +I+T+WG GY + + Sbjct: 185 KVWKDEFFESDNTIMVHIRNIREKIEENPKKPVFIKTIWGVGYKIEK 231 >gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1] gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 73 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWGY 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 192 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231 >gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 230 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ A+ I + LK + V + G + ++ + FD ++LD+ + ++ GF Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + +L+ + EDKV GL GADDYI+KPF+ EL+ARI++++RR Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G ++L AK V+ G + +T EY ++ ++ ++++ L+ Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV I +LR+K+ +IET+WG GY R Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWR 227 >gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 231 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + LK E F V D GE+ + L +D +LD+ L + G+E Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR PV LS + DKV GL+ G DDY++KPF EL+AR+RA++RR Sbjct: 67 LCRRLRSKTTV-PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A I ++++ DA T + I LT +E++++ L +++E L Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E K +D I +LR K+ A +ETV G GY R+ Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIEGAGYDPGLVETVRGYGYRFRQ 231 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + +EL + FD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIREERNM-PIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + GDL+VN D + V ++G + LT KE+ ++ELL+ K L+ Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + S PV +L+ + DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 63 VCRQLR-QRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S + G + ++++ V V G ++ L KE++++E+L LT+ ++ + Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGYKFEP 226 >gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] Length = 237 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L ++V G+ G+ L + +DA+ILDL L + G + Sbjct: 5 RILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGVDGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R TP+ I+S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 65 ICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQEA 124 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++L+ G L+++ A+ V I LT +E+ ++ + ++ L Sbjct: 125 MGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + ++ I +LR K+ + +I TVWG GY + Sbjct: 185 DKVWGYQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGYKFGD 232 >gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] Length = 237 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F V GE+ ++ + D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ + DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRDI 122 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I G+L + DA VE G +I LT +E++++ L+ +T+E Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L + +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 HLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE 237 >gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium KLH11] gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium KLH11] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 157/224 (70%), Positives = 186/224 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDP 224 >gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 242 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E +D Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGED 242 >gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 227 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DDK + + L L+ E F+V G+ ++ + +ILD+ L I G Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ DKV L+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 66 LCREVR-KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124 Query: 122 HAQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ V+L V +G + LT KE +++ L N T++ L +++ Sbjct: 125 ESEEKQAVSYPELYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+K+ + K + TVWG GY N Sbjct: 185 GYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ LA IEL LK E + V V G G+ + D +ILD L I G E Sbjct: 4 HILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGISGPE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 64 ICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ DLS+N + V I LT KE+ ++E L LT+E L ++ Sbjct: 124 EDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL ++TV G GYVLR+ Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEAN-NESRLVQTVRGVGYVLRD 224 >gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 226 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++++A + +L+ E F+ + G D +E D ++LDL L + G E Sbjct: 3 RVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR PV +++ S DKV GL+ GADDYI+KP++ EL+ARIRA++RR Sbjct: 63 VCKQLRGRGAV-PVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGAD 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G + +++D V V G L KE+ ++E L LT+ ++ + Sbjct: 122 ADDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ Y+ TV G GY L Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKLE 225 >gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ IL+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 68 CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 127 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550] gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L +NV + + G +E+ + +ILD+ + + G Sbjct: 1 MKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VRRS Sbjct: 61 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 120 Query: 121 GHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + GDL+++ +++ V G I LT E+ +++LL + LT+ Sbjct: 121 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K G I TV G GYVLRE A Sbjct: 181 ILEEVWGCDFPTSGNALEVYIGYLRRKTELE-GEDRLIHTVRGVGYVLRETAP 232 >gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 233 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + L+ F V G + L + ++LDL L + G +V Sbjct: 5 ILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMDGLDV 64 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 RALR P+ +L+ D++ GL+ GADDYI+KPF+ ELVAR+RA++RRS Sbjct: 65 TRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRSE 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G L ++L+ ++V G I LT E+ ++ +L+ T+ L+ + Sbjct: 125 GSTSPGKQIQIGGLVIDLECRSVRRDGETIELTATEFDLLAVLASAPGRPFTRAQLLDRV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRE 223 Y+ + ID I LR+K+ + G I TV+G GY E Sbjct: 185 YNTEYTGFDRTIDAHIKNLRRKIEPDSNGPPRLILTVYGVGYKFAE 230 >gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 635 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 124/223 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD + + +I L + + V + GE G+EL + + +D I+LD+ L + G Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + TP+ +L+ + D V GL++GADDY+ KPF+ EL+ARI+A+ RR + Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N V QG +HLT EY ++EL ++++ ++ ++ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P + I I LR+KL +N I+TV+G GY L E Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223 Score = 62.3 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++LI+DD ++ L FNV + + + D +ILDL + G + Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 +A+R P+ LSG E + L GAD Y+ K Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTI 612 >gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842] Length = 233 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 6 ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVR-EIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ I GD+ VN+ + V + + LT +E++++ELL + L Sbjct: 125 SGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+K+ YI+TVWG GY + ++ Sbjct: 185 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232 >gi|118588295|ref|ZP_01545704.1| two-component transcriptional regulator [Stappia aggregata IAM 12614] gi|118439001|gb|EAV45633.1| two-component transcriptional regulator [Stappia aggregata IAM 12614] Length = 243 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 173/230 (75%), Positives = 196/230 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 14 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG + IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 74 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 134 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE + Sbjct: 194 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLREPDVEAAA 243 >gi|77463175|ref|YP_352679.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462047|ref|YP_001043161.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332558049|ref|ZP_08412371.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77387593|gb|ABA78778.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] gi|126103711|gb|ABN76389.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|332275761|gb|EGJ21076.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 237 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 158/229 (68%), Positives = 188/229 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG + VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ ET Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229 >gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] Length = 227 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V G + +E D ++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF--NKEELVARIRAIVRR 118 EV R LR A P+ +L+ S+ ++V GL +GADDY+ KPF + R Sbjct: 61 EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRSLLRRTT 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++ + V +I LT E+ ++E+L LT+ L + Sbjct: 121 RDEEESEAVSFADLTLDPVTREVTRGERQISLTRTEFALLEMLMSNPKRVLTRSRILEEV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V+I LR+K G I TV G GYVLRE Sbjct: 181 WGYDFPTSGNALEVYIGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 224 >gi|294011554|ref|YP_003545014.1| OmpR-family two-component system response regulator [Sphingobium japonicum UT26S] gi|307294329|ref|ZP_07574173.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|292674884|dbj|BAI96402.1| OmpR-family two-component system response regulator [Sphingobium japonicum UT26S] gi|306880480|gb|EFN11697.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 235 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 154/228 (67%), Positives = 190/228 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG++ ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRAAKVQTPVLILSGVAEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+ A G+NYIETVWGRGYVLR+ + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACNGENYIETVWGRGYVLRDPDEAE 228 >gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 68 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 127 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V G+DG+ + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R + TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L+++ + V G I LT +E+ ++ + ++ L Sbjct: 126 LSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKLVAPGPAEA 239 >gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 231 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + L++E + V G + + D ++LD+ + G++V Sbjct: 7 VLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYDV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R PV L+ DK+RGL GADD+I K E+VARI+A++RR R Sbjct: 67 LRRIR-ENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRRG 125 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G L +++ A V V G + LT +E+++++L + T+E L+ Sbjct: 126 EPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + V I +LR+K+ YI TVWG GY A+ Sbjct: 186 G--EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEAR 230 >gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 226 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L+ E + VT G +G+E + D I+LDL L + G E Sbjct: 3 KVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMGTE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 V ALR + + PV +L+ D+V G + GADDYI KPF+ EL+ RIRAI+R Sbjct: 63 VCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRS 122 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I G + ++ + V V G I LT EY+++ L+ + +E+ L Sbjct: 123 SQEPDTTERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +D + +LR KL +A I+TV G GY L E Sbjct: 183 DVWGYNFVGDTRTVDTHVTRLRNKLGDAG---EMIKTVRGFGYKLEE 226 >gi|75761429|ref|ZP_00741398.1| Two-component response regulator yvrH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899799|ref|ZP_04064045.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228906846|ref|ZP_04070715.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|74491087|gb|EAO54334.1| Two-component response regulator yvrH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228852850|gb|EEM97635.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228859818|gb|EEN04232.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 236 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E + L K +D IILD+ L GF+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 68 ICPIIRQQTDC-PIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G ++ + + V GH + + + +Q++ N +KE Sbjct: 127 QAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ + YI+TV G GY Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234 >gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03] gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03] Length = 235 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I +L + +A VE G +I LT +E++++ L+ +T+E Sbjct: 123 TQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + + T G GY ++ + + Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVKNPSDE 235 >gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597] gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564] gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564] gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597] Length = 235 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 ASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + +FD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIREERNM-PIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + GDL+VN D + V V+G + LT KE+ +++LL+ K L+ Sbjct: 123 YNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237 >gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ ++ L+ N++V V + G+ +L +FDAI+LDL L + G Sbjct: 3 KILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR KISTPV +++ D+V GL+ GADDYI+KPF+ E++AR++A++RRS+ Sbjct: 63 VLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122 Query: 122 HAQSLIVTGDL-----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + ++ + K V + LT +EY+++ + R + +E L Sbjct: 123 DHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +++D+ I LR+K+ ++TV G GY Sbjct: 183 AVWGYEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGY 225 >gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 232 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + + L+ E F V G D + ++ D ++LD+ + + G+E Sbjct: 5 KILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGYE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + P+ L+ + DK+ GL G+DDY++KPF+ EL+ RIRAI+RR Sbjct: 65 VCRKIR-EQSNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRRVAD 123 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I L +N +TVE +G I LT KE+ ++ LL+ N T++ + Sbjct: 124 NSSVENKDVIKVPGLVINRATRTVEFEGKEIELTPKEFDLLWLLASHPNQVFTRDQLIYQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + I+ + +LR+K+ YI+T+ G GY Sbjct: 184 IWDTEYCEDTGIVTTLVKRLREKIELDTANPRYIKTIRGVGYKF 227 >gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLTD 56 R+L++EDDK++ ++ L +E + V G++ + D I+LDL L + Sbjct: 14 RLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLMLPN 73 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G E+ R +R I TP+ I+S S D+V GL+ GADDY+ KPF EL+AR RAI+ Sbjct: 74 LNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAIL 133 Query: 117 RRSRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RRS + + ++S+ V I+L KEY+++EL + Sbjct: 134 RRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVWS 193 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L ++ + K +DV I +R+K+ + A +YI TV G GY Sbjct: 194 RDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244 >gi|146277940|ref|YP_001168099.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556181|gb|ABP70794.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 158/229 (68%), Positives = 188/229 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG + VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ ET Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229 >gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKLSIKTIRGLGYRLE 225 >gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 224 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++++ E F+ V D G + ++ + D I+LDL L + G + Sbjct: 4 KILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLMLPGMSGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ + D V GL+SGADDY++KPF +ELVAR+RA +RR Sbjct: 64 VCRTVR-ETSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRQED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ V G I LT E+ ++ L+ R +++ L ++ Sbjct: 123 SPSETLEVGDLTIDVPGHAVFRDGKEISLTPLEFDLLHALASRPKQVFSRDELLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + TV G GY Sbjct: 183 QHTSDTRLVNVHVQRLRSKIELDPENPQIVLTVRGVGYK 221 >gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D +E Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DL ++L + V G + LT E+ ++E+ LT+E Sbjct: 132 AAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR + Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRAGGAE 244 >gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 231 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + LK E F V D GED + L +D +LD+ L + G+E Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLPGMDGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR PV LS + DKV GL+ G DDY++KPF EL+AR+RA++RR Sbjct: 67 LCRRLRSKTTV-PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + ++++ DA T I LT +E++++ L +++E L Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E K +D I +LR K+ +A +ETV G GY ++ Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIESAGYDPGLVETVRGYGYRFKQ 231 >gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 224 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+ +D+ + + LK E + + G ++L + D IILD+ + G+ Sbjct: 5 KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R P+ +L+ D++ G GAD+YI+KPF+ + L ARI+A++RR + Sbjct: 65 TVCREIR-KSSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRRVQ 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G ++ + V V G + L+ KE++++ L+ L++E LN ++D Sbjct: 124 NNRTVRSFDGL-EIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +V+ +D I KLR KL + I+TV G GY Sbjct: 183 YDYFGDVRTVDTHIKKLRLKLGEKSY---LIQTVRGLGYRFE 221 >gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +D+ + + + K E F V G + + + + D I+LD+ + + G EV Sbjct: 7 VLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPVLDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ S +D++ GL+ GADDYISKPFN E+VAR++A++RR+ Sbjct: 67 CKQVR-KISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLRRTNAS 125 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +L +NL V G I T KE +++ L+ ++ L + Sbjct: 126 MSSQNKQVLEYPNLMINLSEYRVVAFGREITFTAKEMELLWCLASNPGIVFSRNQLLEKI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I ++R KL I TVWG GY Sbjct: 186 WGYTYYGDTRTVDTHIKRVRHKLDIPPDSTWDIMTVWGVGYKFE 229 >gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I++ L +E + G + +EL K IILD+ + + G E Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS S DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 65 ACMKIREEKSM-PIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S D+++N+ V + + LT +E+ ++ELL+ + + E Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVRIGDQLVKLTPREFDILELLARNRGVVFSIEKI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I KLR+K+ YI+TVWG GY + + Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1] gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1] Length = 223 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q G + +N ++ +EV G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ + I L+ E + G + +EL K + D I+LD+ + + Sbjct: 1 MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V R +R + +L+ S+ DK+ G + GADDYI+KPF+ + LVA+I A+++R Sbjct: 61 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 120 Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L G L++N + TV + G I LT KE++++ L K LT+EM + Sbjct: 121 ADAGAQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMM 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ +++ +D I +LR+KL I TV G GY L Sbjct: 181 NLVWGYEYYGDLRNVDSHIKRLRQKLK---SEGRLITTVRGSGYKLE 224 >gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 227 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 92/228 (40%), Positives = 142/228 (62%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I LK E + V GE+ + + E+DAIILD+ L + GF Sbjct: 1 MRLLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R K P+ +L+ +I+DKV+GL GADDY+ KPF EEL+ARIR ++RR+ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +++ +L V+LDAKTV I L+G+EY ++E L K L++E +H+++ Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +IDV+I LRKK+ + + I T+ G GYVLR + ++E Sbjct: 181 YDYEGGTNVIDVYIRYLRKKI-DDSYTPKLIHTIRGLGYVLRVDNENE 227 >gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 251 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A+ + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 14 RVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 74 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + ++ + V G RI LT +E+ ++ + R ++ L Sbjct: 134 MAKDARMEAGSLNLAGLFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLL 193 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ + E ++ I +LR K+ + I TVWGRGY + Sbjct: 194 NAVWGYQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGYKFVAD 242 >gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 229 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL+ +D+ + I L LK ENF V + G + + F ++D+ + ++ G Sbjct: 7 KILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDG 66 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 F + R +R + PV ++ +++ G + GADDYI KPF+ E+ AR++A+ R Sbjct: 67 FALCREIR-SFSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + LI TG + +N++ + V V G +I+LT KE+ ++ L K L++E + Sbjct: 126 NPVQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + + +D I KLR+KL AG + I+T+WG GY N Sbjct: 186 WDYDYFGDQRTVDTHIKKLREKLGEKAGNE--IKTIWGVGYKFEVN 229 >gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 227 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ L L+ E F V GE +E D +ILD+ L G+ V Sbjct: 6 ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +LS D+V GL+ GADDY++KPF+ ELVAR++A++RRS Sbjct: 66 CREIRRQTAV-PIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSNAP 124 Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + L+++ +A+ VEV+G I LT KE++++ L+ R ++E L + Sbjct: 125 AGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLAGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + + +D I +LR+KL G+NY++TVWG GY Sbjct: 185 WDYEYPGDTRTVDTHIKRLREKLR--GTGRNYLKTVWGLGYKFE 226 >gi|152974657|ref|YP_001374174.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023409|gb|ABS21179.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E+ + L + + +D +ILD+ L GF+ Sbjct: 6 ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHLK 124 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G V+ A ++V G+ + + + +Q++ N +KE Sbjct: 125 YTPKTIQTSDIYSFGRFQVDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKFIP 233 >gi|254503130|ref|ZP_05115281.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222439201|gb|EEE45880.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 230 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 173/230 (75%), Positives = 196/230 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDNATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG + IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLREPDVEAAA 230 >gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L+ E ++V G++ +E+ IILDL L D+ G EV Sbjct: 4 ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLSGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +L+ S D++RGL GADDY+ KPF+ ELVAR+RA++RR+ + Sbjct: 64 CVQIRKESRV-PILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGDY 122 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL+++++ K V G + +T EY+++ L T +E + + Sbjct: 123 STLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVMG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + ID I LR+K+ YI+TV+G GY + Sbjct: 183 FDFEGYDRTIDTHIKNLRQKIEADPKQPEYIKTVYGLGYRFDDP 226 >gi|163939018|ref|YP_001643902.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861215|gb|ABY42274.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 233 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLI+D+ A+ + +L+ E F ++ E + L + +D IILD+ L GF+ Sbjct: 6 ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K P+ L+ +S DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPILR-QKTDCPIFFLTAKTSDVDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G ++ + + V G+ + + + +Q++ N +KE Sbjct: 125 QNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELYE 184 Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|220923532|ref|YP_002498834.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948139|gb|ACL58531.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 233 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 174/228 (76%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPSDDE 228 >gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 235 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I L++ + V V + GE ++ C+ D IILD+ L I G EV Sbjct: 6 ILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLEV 65 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR VA P+ +L+ DKV GL+ GADDYI+KPF EL+AR++A++RR+ Sbjct: 66 CKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRRTE 125 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G L+++ V G+++ T KE+++++LL L + L+++ L+ + Sbjct: 126 NNDMEPKIIKVGGLTIDTSKYEVYKNGNKLDFTLKEFELLKLLVLNQGKVLSRDYLLDQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E + +DV I +R+KL + YIET+ G GY + + E Sbjct: 186 WGYEYFGETRTVDVHIRHIRQKLGDDMDEAKYIETIRGVGYKFIASEEGE 235 >gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 232 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V G++ ++L +D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLPKLDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V +++R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+R Sbjct: 64 VCQSIR-EFSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASI 122 Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + R +++I GDL ++ + + + G +LT KE+ M+ LL ++E Sbjct: 123 GMAAAQERREEENIIENGDLVLDKSNRRLTILGVEYNLTSKEFDMLLLLVTNPRKVFSRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV + +LR+K+ Y+ T WG GY Sbjct: 183 DLLHTIWGTDYPGDERTVDVHVRRLREKIEPNPKEPKYVRTKWGVGY 229 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + I +L E + V + G + + + D +ILDL L D+ G E Sbjct: 5 KILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR PV I+S DK+ G GADDY++KPF+ ELV R++A++RR + Sbjct: 65 VCRQLRAKYAI-PVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I L ++ ++TVE+ G I+LT +E+ ++ +L+ N +++ LN Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I +LR+KL I+TVWG GY + Sbjct: 184 VWKNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGYKFQ 228 >gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 239 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 R+L++EDD +A + + L E ++V G+ G+ L + DA++LD+ L + G Sbjct: 5 RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R P+ I+S S ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQS + G L ++ A+T V+G + LT +E+ ++ + + + Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ + + ++ I +LR K+ + TVWGRGY L + A Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKLVDPA 235 >gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 44 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 103 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 104 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 164 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 223 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 224 NAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPDQRDA 277 >gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 236 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A + + L E ++V G G+ + + A++LDL L + G E Sbjct: 6 RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 66 ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G LS++ A+ V G + LT +E+ ++ + + ++ L Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N ++ R + ++ I +LR K+ I TVWGRGY L E+A Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235 >gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 234 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V V G + ++L + E D ++LD L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVEGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R + PV +++ S DKV GL+ GADDY++KPF+ EL+ARI+A +RR Sbjct: 63 VLRQIRTKSQT-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L+++ DA V G I LT +E++++ LS +T++ Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + ++R+K+ + T G GY L+ + + Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLKASEE 234 >gi|114152683|gb|ABI52588.1| two-component response regulator [Bacillus cytotoxicus] Length = 235 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + +L+ E F ++ E+ + L + + +D +ILD+ L GF+ Sbjct: 6 ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHLK 124 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G ++ A ++V G+ + + + +Q++ N +KE Sbjct: 125 YTPKTIQTSDIYSFGRFQIDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKFIP 233 >gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I+ L++E F V G G+ + +D +ILD+ L + G+ Sbjct: 1 MRVLVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A + +L+ D+ L +GADDY+SKPF+ LVAR++A+ RR Sbjct: 61 RVCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A V GDL V+ A+T G I LT +E+ +++ L+ R ++K L ++D Sbjct: 121 SRAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++V I LR+K+ + G++ ++TV G GY L + Sbjct: 181 AAADSDPNTVEVHISALRRKI-DTPFGRSALQTVRGAGYRLEPDG 224 >gi|229010510|ref|ZP_04167712.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229132011|ref|ZP_04260874.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166052|ref|ZP_04293816.1| Two-component response regulator [Bacillus cereus AH621] gi|228617463|gb|EEK74524.1| Two-component response regulator [Bacillus cereus AH621] gi|228651411|gb|EEL07383.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228750708|gb|EEM00532.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLI+D+ A+ + +L+ E F ++ E + L + +D IILD+ L GF+ Sbjct: 6 ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPILR-QKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G ++ + + V G+ + + + +Q++ N +KE Sbjct: 125 QNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELYE 184 Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 228 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++DD+ + + + + L++ENF + ++ I++ E + ++LD+ + I Sbjct: 1 MKGYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R K P+ ++S S DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 61 GIEACMRIRKDKNM-PIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119 Query: 119 SRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + GDL++N D + + V + LT KE+ ++ELL+ K L+ Sbjct: 120 YQKYNTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIR 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LR+K+ YI+T+WG GY + Sbjct: 180 KIYEEVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ ++L L+ E + V G+D + + +D ++LD+ + + G E Sbjct: 4 RILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R A+ TP+ +L+ + DKV GL GA+DYI+KPF EEL+AR+R +R+ Sbjct: 64 VLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVVQ 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A DL V+L A V G +I LT +E+ ++ L KN LT+E + ++ Sbjct: 124 AANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++DV+I LR+K+ I+TV G GY ++E+ + Sbjct: 184 GYDYFGDTNVVDVYIRYLRQKVDKNFEIP-IIQTVRGVGYTIKEDKQ 229 >gi|115526264|ref|YP_783175.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520211|gb|ABJ08195.1| cell cycle transcriptional regulator CtrA / two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 233 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 169/228 (74%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPTEDE 228 >gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 227 Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I K E F G + +ELC+ +D +++D+ + + GF Sbjct: 3 KILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIMMPHLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ K P +LS + D++ G G DDY+ KPF+ +EL+ RI AI++R Sbjct: 63 AVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVHP 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ A+TV ++G RI L+ KEY+++ L LT+E L ++ Sbjct: 123 VEAVSSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQNV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I LRK L + A YI T+ G GY + Sbjct: 183 WGYDFFGDDRTLDTHIKLLRKNLGDYA---KYIITLRGVGYRFEK 224 >gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus pseudintermedius ED99] Length = 241 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E + + G + +++ Y++ I+LDL L ++ G EV Sbjct: 6 ILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++R Sbjct: 66 AVKLR-ELKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTESS 124 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ HA+ +I L+++ DA V G ++LT KEY+++ L+ N +E Sbjct: 125 KAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY + DET Sbjct: 185 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEVSKSDETT 241 >gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] Length = 238 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237 >gi|229056843|ref|ZP_04196242.1| Two-component response regulator [Bacillus cereus AH603] gi|228720493|gb|EEL72062.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLI+D+ A+ + +L+ E F ++ E + L + +D IILD+ L GF+ Sbjct: 6 ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ +S DK+ G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G ++ + + V G+ + + + +Q++ N +KE Sbjct: 125 QNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELYE 184 Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I KLR+K+ YI+TV G GY Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + +EL + FD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIREERNM-PIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + GDL+VN D + V ++G + LT KE+ ++ELL+ K L+ Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGYKI 228 >gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++++ +E+ E ++ G+ G E +D +I+D L + G Sbjct: 1 MKILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPIMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR + Sbjct: 61 TLCRKIR-ELSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRFQ 119 Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ +++ G + LT KE+ ++ L T+E Sbjct: 120 AETGSADEPHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPKQVFTREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ ++ + + + +DV I +LRKK+ + +I TVWG GY E A D Sbjct: 180 LDSVWGYQFYGDERTVDVHIKRLRKKIG--TEEQPFIHTVWGVGYKFDETAAD 230 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 133/233 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ A+++ +L ++N+ V V G EL + Y++D I+LD+ L + G Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+G S +K GL +GADDY+ KPF++EELVAR+RA++RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ ++ G+L ++ + V + + LT KEY ++EL + M L H++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 D P + + I LR KL NA + +ETV+G GY L+ +++ + Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGSKEE 233 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD + ++ +L+ + V+ G++ I D I+LDL + + G+E Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 + L+ + + + I+ D++SKP + Sbjct: 1439 MAMLKESTETKHIPIVICSVYKPTSNHQPSRDFVDWVSKPVQESY 1483 Score = 68.5 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L ++DD + ++ +L V D E + D +ILD+ + G E Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 439 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + +R + P+ L+ E + GADD++SKP Sbjct: 440 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPI 483 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD LA + + + + G + I L + D +ILDL L + GF Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1559 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 V+ + PV + S E + + L+ G ++++K Sbjct: 1560 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKG 1602 >gi|17986706|ref|NP_539340.1| response regulator CTRA [Brucella melitensis bv. 1 str. 16M] gi|23502462|ref|NP_698589.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330] gi|62290479|ref|YP_222272.1| cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1 str. 9-941] gi|82700402|ref|YP_414976.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148559147|ref|YP_001259466.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC 25840] gi|161619539|ref|YP_001593426.1| hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365] gi|163843848|ref|YP_001628252.1| hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445] gi|189024706|ref|YP_001935474.1| transcriptional regulator [Brucella abortus S19] gi|225628033|ref|ZP_03786069.1| response regulator CTRA [Brucella ceti str. Cudo] gi|225853072|ref|YP_002733305.1| hypothetical protein BMEA_A1651 [Brucella melitensis ATCC 23457] gi|237815987|ref|ZP_04594984.1| response regulator CTRA [Brucella abortus str. 2308 A] gi|254689779|ref|ZP_05153033.1| hypothetical protein Babob68_06309 [Brucella abortus bv. 6 str. 870] gi|254694268|ref|ZP_05156096.1| hypothetical protein Babob3T_06319 [Brucella abortus bv. 3 str. Tulya] gi|254697923|ref|ZP_05159751.1| hypothetical protein Babob28_09480 [Brucella abortus bv. 2 str. 86/8/59] gi|254702316|ref|ZP_05164144.1| hypothetical protein Bsuib55_15851 [Brucella suis bv. 5 str. 513] gi|254704844|ref|ZP_05166672.1| hypothetical protein Bsuib36_13179 [Brucella suis bv. 3 str. 686] gi|254708258|ref|ZP_05170086.1| hypothetical protein BpinM_15199 [Brucella pinnipedialis M163/99/10] gi|254710630|ref|ZP_05172441.1| hypothetical protein BpinB_10241 [Brucella pinnipedialis B2/94] gi|254714814|ref|ZP_05176625.1| hypothetical protein BcetM6_16039 [Brucella ceti M644/93/1] gi|254717874|ref|ZP_05179685.1| hypothetical protein BcetM_16006 [Brucella ceti M13/05/1] gi|254719624|ref|ZP_05181435.1| hypothetical protein Bru83_08785 [Brucella sp. 83/13] gi|254730813|ref|ZP_05189391.1| hypothetical protein Babob42_06339 [Brucella abortus bv. 4 str. 292] gi|256032123|ref|ZP_05445737.1| hypothetical protein BpinM2_16008 [Brucella pinnipedialis M292/94/1] gi|256045215|ref|ZP_05448113.1| hypothetical protein Bmelb1R_12041 [Brucella melitensis bv. 1 str. Rev.1] gi|256061645|ref|ZP_05451784.1| hypothetical protein Bneo5_14960 [Brucella neotomae 5K33] gi|256114167|ref|ZP_05454921.1| hypothetical protein Bmelb3E_15257 [Brucella melitensis bv. 3 str. Ether] gi|256160319|ref|ZP_05458013.1| hypothetical protein BcetM4_15036 [Brucella ceti M490/95/1] gi|256255524|ref|ZP_05461060.1| hypothetical protein BcetB_14813 [Brucella ceti B1/94] gi|256258031|ref|ZP_05463567.1| hypothetical protein Babob9C_11923 [Brucella abortus bv. 9 str. C68] gi|256263445|ref|ZP_05465977.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256370012|ref|YP_003107523.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM 4915] gi|260169258|ref|ZP_05756069.1| cell cycle transcriptional regulator CtrA [Brucella sp. F5/99] gi|260547010|ref|ZP_05822749.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260565187|ref|ZP_05835671.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260565914|ref|ZP_05836384.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755311|ref|ZP_05867659.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758532|ref|ZP_05870880.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762356|ref|ZP_05874699.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884328|ref|ZP_05895942.1| response regulator CtrA [Brucella abortus bv. 9 str. C68] gi|261214576|ref|ZP_05928857.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219720|ref|ZP_05934001.1| response regulator CtrA [Brucella ceti M13/05/1] gi|261222734|ref|ZP_05937015.1| response regulator CtrA [Brucella ceti B1/94] gi|261315759|ref|ZP_05954956.1| response regulator CtrA [Brucella pinnipedialis M163/99/10] gi|261318202|ref|ZP_05957399.1| response regulator CtrA [Brucella pinnipedialis B2/94] gi|261322609|ref|ZP_05961806.1| response regulator CtrA [Brucella ceti M644/93/1] gi|261325655|ref|ZP_05964852.1| response regulator CtrA [Brucella neotomae 5K33] gi|261752882|ref|ZP_05996591.1| response regulator CtrA [Brucella suis bv. 5 str. 513] gi|261755541|ref|ZP_05999250.1| response regulator CtrA [Brucella suis bv. 3 str. 686] gi|261758771|ref|ZP_06002480.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265984635|ref|ZP_06097370.1| response regulator CtrA [Brucella sp. 83/13] gi|265989235|ref|ZP_06101792.1| response regulator CtrA [Brucella pinnipedialis M292/94/1] gi|265991648|ref|ZP_06104205.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1] gi|265995486|ref|ZP_06108043.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether] gi|265998696|ref|ZP_06111253.1| response regulator CtrA [Brucella ceti M490/95/1] gi|294852911|ref|ZP_06793584.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026] gi|297248862|ref|ZP_06932580.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str. B3196] gi|306837741|ref|ZP_07470609.1| response regulator CTRA [Brucella sp. NF 2653] gi|306843047|ref|ZP_07475672.1| response regulator CTRA [Brucella sp. BO2] gi|306844599|ref|ZP_07477186.1| response regulator CTRA [Brucella sp. BO1] gi|81325649|sp|Q9ZHS1|CTRA_BRUAB RecName: Full=Cell cycle response regulator CtrA gi|81752222|sp|Q8FZ93|CTRA_BRUSU RecName: Full=Cell cycle response regulator CtrA gi|81832695|sp|Q7CNV1|CTRA_BRUME RecName: Full=Cell cycle response regulator CtrA gi|123547126|sp|Q2YQA4|CTRA_BRUA2 RecName: Full=Cell cycle response regulator CtrA gi|223635099|sp|B2S753|CTRA_BRUA1 RecName: Full=Cell cycle response regulator CtrA gi|223635100|sp|A9M708|CTRA_BRUC2 RecName: Full=Cell cycle response regulator CtrA gi|223635101|sp|A5VRW9|CTRA_BRUO2 RecName: Full=Cell cycle response regulator CtrA gi|223635102|sp|B0CI76|CTRA_BRUSI RecName: Full=Cell cycle response regulator CtrA gi|19223933|gb|AAL86376.1|AF411570_1 response regulator CtrA [Brucella abortus] gi|2952543|gb|AAC69920.1| response regulator CtrA [Brucella abortus] gi|17982329|gb|AAL51604.1| response regulator ctra [Brucella melitensis bv. 1 str. 16M] gi|23348453|gb|AAN30504.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330] gi|62196611|gb|AAX74911.1| CtrA, cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1 str. 9-941] gi|82616503|emb|CAJ11570.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148370404|gb|ABQ60383.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC 25840] gi|161336350|gb|ABX62655.1| Hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365] gi|163674571|gb|ABY38682.1| Hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445] gi|189020278|gb|ACD73000.1| Transcriptional regulatory protein [Brucella abortus S19] gi|225617196|gb|EEH14242.1| response regulator CTRA [Brucella ceti str. Cudo] gi|225641437|gb|ACO01351.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789285|gb|EEP63496.1| response regulator CTRA [Brucella abortus str. 2308 A] gi|256000175|gb|ACU48574.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM 4915] gi|260096060|gb|EEW79937.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260151255|gb|EEW86349.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155432|gb|EEW90512.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260668850|gb|EEX55790.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672788|gb|EEX59609.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675419|gb|EEX62240.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260873856|gb|EEX80925.1| response regulator CtrA [Brucella abortus bv. 9 str. C68] gi|260916183|gb|EEX83044.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921318|gb|EEX87971.1| response regulator CtrA [Brucella ceti B1/94] gi|260924809|gb|EEX91377.1| response regulator CtrA [Brucella ceti M13/05/1] gi|261295299|gb|EEX98795.1| response regulator CtrA [Brucella ceti M644/93/1] gi|261297425|gb|EEY00922.1| response regulator CtrA [Brucella pinnipedialis B2/94] gi|261301635|gb|EEY05132.1| response regulator CtrA [Brucella neotomae 5K33] gi|261304785|gb|EEY08282.1| response regulator CtrA [Brucella pinnipedialis M163/99/10] gi|261738755|gb|EEY26751.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261742635|gb|EEY30561.1| response regulator CtrA [Brucella suis bv. 5 str. 513] gi|261745294|gb|EEY33220.1| response regulator CtrA [Brucella suis bv. 3 str. 686] gi|262553320|gb|EEZ09154.1| response regulator CtrA [Brucella ceti M490/95/1] gi|262766599|gb|EEZ12388.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether] gi|263002432|gb|EEZ15007.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1] gi|263093453|gb|EEZ17503.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661432|gb|EEZ31693.1| response regulator CtrA [Brucella pinnipedialis M292/94/1] gi|264663227|gb|EEZ33488.1| response regulator CtrA [Brucella sp. 83/13] gi|294821500|gb|EFG38499.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026] gi|297176031|gb|EFH35378.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str. B3196] gi|306275043|gb|EFM56806.1| response regulator CTRA [Brucella sp. BO1] gi|306286777|gb|EFM58323.1| response regulator CTRA [Brucella sp. BO2] gi|306407197|gb|EFM63408.1| response regulator CTRA [Brucella sp. NF 2653] gi|326409615|gb|ADZ66680.1| Transcriptional regulatory protein [Brucella melitensis M28] gi|326539318|gb|ADZ87533.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 232 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 168/227 (74%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL +G ++YIETVWGRGYVLRE + Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLREPDAE 227 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q G + +N ++ +EV G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 134/222 (60%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++++ + ++++L+ E + V + G+D IE+ K D IILD+ L D GF+ Sbjct: 3 KILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ V P+ +L+ + I DKV GL+ GADDY++KPF+ EL+AR++A++RR Sbjct: 63 ILK-KIVPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL VN D V+ +G I+LT KE+ ++++L K LT+E L+ ++ Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D+ I +LRKK+ + YI TV+G GY Sbjct: 182 GYDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGYKF 223 >gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88] gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + L++E + V + G +EL + + D IILD+ + ++ G E Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+AR+++ +RR + Sbjct: 66 CTKIREEKNM-PIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 D ++N V+V ++ LT +E+ ++ELL+ K + E Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I KLR+K+ Y++TVWG GY + + Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEK 232 >gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 73 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKRYQI 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 231 >gi|39934702|ref|NP_946978.1| two-component cell cycle transcriptional regulatorCtrA [Rhodopseudomonas palustris CGA009] gi|192290218|ref|YP_001990823.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|316935200|ref|YP_004110182.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|39648552|emb|CAE27073.1| two-component cell cycle transcriptional regulator ctrA, winged helix family [Rhodopseudomonas palustris CGA009] gi|192283967|gb|ACF00348.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|315602914|gb|ADU45449.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 168/228 (73%), Positives = 201/228 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPSEDD 228 >gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ LA IEL L+ E + V V G G+ + + D +ILD L + G E Sbjct: 4 HILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 64 ICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DLS+N + V I LT KE+ +++ L LT++ L ++ Sbjct: 124 EDPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + II+V++ LR KL G K ++TV G GYVLRE++ Sbjct: 184 DFMGDSNIIEVYVRYLRLKLEAN-GEKRLVQTVRGVGYVLRESS 226 >gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 226 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 117/221 (52%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L E ++ G++ +++ + + D +I+D+ + ++ G+E Sbjct: 5 RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ +KV+G GADDY+ KPF+ ELVAR++A+++R R Sbjct: 65 LCRELR-DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G LS+N + + L KE++++ L+ T T++ + ++ Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ + +I T+ G GY L Sbjct: 184 DYEGDERTVDVHIKRLRERFAQ-PNVPFFIRTIRGLGYRLE 223 >gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 228 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++DD+ + + + + L++ENF + ++ I++ E + ++LD+ + I Sbjct: 1 MKGYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R K P+ ++S S DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 61 GIEACMRIRKDKNM-PIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119 Query: 119 SRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + GDL++N D + + V + I LT KE+ ++ELL+ K L+ Sbjct: 120 YQKYNTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIR 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LR+K+ YI+T+WG GY + Sbjct: 180 KIYEEVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228 >gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9313] gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9313] Length = 245 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58 R+L++EDD A+ +I L +E F + G + + + ++FD IILD+ L I Sbjct: 18 RLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIG 77 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R LR T + ++S + D+V GL+ GADDY+ KPF+ ELVAR RA +RR Sbjct: 78 GLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRR 137 Query: 119 SRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I G+L + ++ V G + L KEY++++LL L+++ Sbjct: 138 YQERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQI 197 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I +R+K+ I TV G GY Sbjct: 198 LERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFGYRF 244 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ +A ++L L+ E + + G +G+ + ++D I+LD+ L ++ G + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 VL+ +R + TPV +L+ S +EDKV+GL GA+DY++KPF EEL+ARIR + Sbjct: 64 VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQK 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + G LS+N + V I LT +EY ++ L LT+E L ++ Sbjct: 124 VSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++DV+I +R+KL A I+T+ G GYVL+E++ Sbjct: 184 GYDYYGDTNVVDVYIRYVRQKLEAANPTP-LIQTIRGVGYVLKEHS 228 >gi|75674723|ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74419593|gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi Nb-255] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 169/228 (74%), Positives = 201/228 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEDE 228 >gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13] gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13] gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ ED++ + + +EL L E + V+ G + +++ K +LD+ + I GF Sbjct: 1 MNILIAEDEQDIRNLLELHLLKEGYTVFKAVNGLEALDILKKEHIHLALLDVMMDGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR PV L+ +DK+ GL GADDY+ KPF EL+ARI++ +RR Sbjct: 61 NLLKMLR-EWSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCY 119 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ I G+L ++ + TV+ G + L KE++++E+L TK+ ++ Sbjct: 120 KYSGENELIKIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I V I LR K+ I+T+ G GY + Sbjct: 180 WQEEYLGDDNTIMVHISHLRDKIEEDPKNPCKIKTIRGIGYRFEK 224 >gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA IEL LK E +NV V + G G+ + + D I+LD L + G ++ Sbjct: 6 ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + P+ +L+ I D+V GL +GADDYI KPFN EEL+AR+RA +RR++ Sbjct: 66 CKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQQD 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+ DL++N + + V I LT KE+ ++E L LT++ L ++ Sbjct: 126 DPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWGYD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL A K I+TV G GYVLR+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEKEKRIIQTVRGVGYVLRD 225 >gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + L++E + V G + +++ K + IILD+ + ++ G E Sbjct: 6 ILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIMMPNMDGIEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 66 CIKIR-EHKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTKL 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ ++N+ V+V I+LT +E+ ++ELL+ + + E Sbjct: 125 NNAMQNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I K+R+K+ + YI+TVWG GY + Sbjct: 185 ERVWNEEFYQSDNTVMVHIRKIREKIEENSRKPKYIKTVWGVGYKIE 231 >gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] Length = 226 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L ++ F V GE+ +++ + ++LD+ + + G+ Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R PV +L+ S D+++G G D+YISKPF+ + LVAR+ AI+RR+ Sbjct: 65 EVLRTIR-KYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTN 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + ++ A V + G I L+ KE++++ + L++E LN++++ Sbjct: 124 VASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ YI+T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG---EYIKTIWGMGYKFE 222 >gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +DD +A IE+ LK E + V GED IE+ + D ++LD+ + + Sbjct: 1 MKPITILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R + P+ LS +S DKV+GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRTK-QNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + ++ + +TV V G RI LT KE+ ++ LL+ + Sbjct: 120 RFLTLNQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYS 179 Query: 171 KEMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + + V I LRKKL I+T+WG GY Sbjct: 180 LENIFQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 231 >gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 240 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 118/231 (51%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A + L L+ E + + G G+ + +DA+ILDL L + G E Sbjct: 6 KILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 66 ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L + L ++ A+ V + + LT +E+ ++ + ++ L Sbjct: 126 MSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVELTPREFDLLYFFAKNPGKVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 N ++ E ++ I +LR K+ I TVWG+GY +++ Sbjct: 186 NQVWGYEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGYKFVSSSE 236 >gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896] Length = 230 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 126/229 (55%), Gaps = 8/229 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+IED+K ++ ++ LK E +++ G DG + D I+LD+ L + Sbjct: 1 MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+V R +R K S P+ +++ DK+ GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 61 GFDVCRHIR-EKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRR 119 Query: 119 SRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + I +L ++ +V + LT +EY++++ L+++ N ++E Sbjct: 120 TSMPNNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQ 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +++ +DV I +LR+KL + A YI T G GY + Sbjct: 180 LLKQVWGYEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFFK 228 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ + V + G + +E + + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +S + DL ++ D + V G I LT E+ +++LL L++ Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ ++V+I LRKK I TV G GYVLRE+ Sbjct: 181 ILEEVWGYDFPTSGNALEVYIGYLRKKTEGE-SDARLIHTVRGVGYVLRES 230 >gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 257 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD +A + L V G + + D ++LDL L + G E Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 78 VCRRMR-ERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L+++ A+ G + LT +E+ ++ ++E + ++ Sbjct: 137 DPAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + V I +LR K+ + I TVWG GY +ET E Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE---AEETGE 243 >gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A L+ + F V + G +G++ K +D +ILD+ L + G+ Sbjct: 3 KILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIMLPKLHGYN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + PV ++S DK++GL GADDYI+KPF+ ELVAR+ A ++ Sbjct: 63 V-MKSIQDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKNYER 121 Query: 122 HAQSLIVTGDLSVNLDA--------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + V + G ++LT KE+ ++ L N +E Sbjct: 122 LKNKFGSKPQDNDIIIRGLQVKKPSRQVFINGKEVNLTQKEFDLLLYLVENPNRVFGREE 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I V I ++R K+ + YIETVWG GY R Sbjct: 182 LFERIWGLEALGDNATITVHIGRIRDKIESNPSEPQYIETVWGAGYRFR 230 >gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 624 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 1/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L +N+ V + GE G EL +D I+LD+ L + G Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR + +L+ + DKV GL +GADDY+ KPF+ +EL ARIRA++RR Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ V ++LT KE+ +++L ++ ++ L+ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 D PE I I LR+KL A ++IETV+G GY L+ + +++C E Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKALSHEQSCPTDEP 236 Score = 60.4 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI+++EDD + I+ L++ + + + + D +ILD + I G E Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + + +R PV + S + + GADD +SKP L+A I + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSADIVEQIFAIGADDCVSKPIVSSTLIACILNRM 615 >gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 23 VLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAV 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 83 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASHT 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G ++++ + V V G R+ LT +E+ ++ +L+ L+++ L ++ Sbjct: 143 EQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVWG 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + DVFI LR+KL G I TV G GYVLRE Sbjct: 203 YDFDVDTNVADVFISYLRRKLERD-GVPRVIHTVRGIGYVLREE 245 >gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 235 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 ASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234 >gi|254473206|ref|ZP_05086604.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211957927|gb|EEA93129.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 229 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 172/226 (76%), Positives = 199/226 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG++ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDTKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL++A GKNYIETVWGRGYVLRE + Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATAGKNYIETVWGRGYVLREPEE 226 >gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 124/223 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L + + V + GE G E + +D I+LD+ L + G Sbjct: 2 MRILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + + PV +L+ + EDKV GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 62 GLCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ V +HLT KEY ++EL +N L++ L++L+ Sbjct: 122 VAPNPILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + V I LRKKL ++IETV+G GY L++ Sbjct: 182 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 224 >gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 245 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ +A I L+ E F VT+ GE G+ + + D I+LDL L + G EV Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 63 LRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R S +L+ D++ GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + T V+LD + LTG E+ ++ + Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + L+ + +++D I +LRKK+ +I+TV G GY + Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDP 244 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + H I + L++E + + + + FD IILD+ + ++ G E Sbjct: 5 ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIMMPEMDGIEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK++GL SGADDYISKPFN EL+AR+++ +RR + + Sbjct: 65 CMKIREEQHM-PIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYKKY 123 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++IV G L +N D + V G I LT KE+ ++ELL+ K ++ Sbjct: 124 NTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R+K+ YI+T+WG GY + Sbjct: 184 SVWKEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGYKI 228 >gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 65 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 124 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 184 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A IEL L+ E + + G +E + + I+LD+ L + G E Sbjct: 5 RILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +TPV +L+ +I DKV GL GA+DY++KPF EEL+ARIRA +R Sbjct: 65 VLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLS 124 Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + G+L+ VN + ++ I LT +E+ ++ L +T+E L Sbjct: 125 TSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQILE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 H++ + ++DV+I +R+KL + I TV G GYV++E+ Sbjct: 185 HVWGFDYFGDTNVVDVYIRYMRQKL-DKPFDAPLIHTVRGVGYVMKESV 232 >gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GD+ +N V + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGDVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L+ E + + + GE ++ ++D I+LDL L + G + Sbjct: 9 RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGVD 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K + PV +L+ ++V G ++G DDY+ KPF+ ELV R++A++RR Sbjct: 69 VCRELRNKKAT-PVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++IV +L+++ DA V G + LT KEY+++ L+ + T+E Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D I +LR+KL+ A I TVWG GY L Sbjct: 188 LLRDVWNYEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKLE 237 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++G Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I GD+S+ + V V+G + KE++++E L K +T+ ++ ++ Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K +DV + ++R K+ Y+ TV G GY + Sbjct: 182 GSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKI 223 >gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 233 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A + L L E F + + GE+ ++ + D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR+RA++RR Sbjct: 66 VCREIRH-TSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + DL +NL +V GH+I + KE +++ L+ N T+E L Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPNWA--LSTVWGIGYKFE 229 >gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 65 CFELR-KYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 124 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 184 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222 >gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I++ L +E + G + +EL K IILD+ + + G E Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS S DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 65 ACMKIREEKSM-PIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S D+++N+ V++ + LT +E+ ++ELL+ + + E Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I KLR+K+ YI+TVWG GY + + Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614] gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E + V + G D + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S PV ++S DKV GL+ GADDY++KP++ ELVARIRA++RR + Sbjct: 63 VCRQIR-QTSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQE 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G + ++++ V V G L KE++++E+ LT+ ++ ++ Sbjct: 122 PDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGYKF 223 >gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 222 >gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L+ E + V G + + + D ++LD+ L + GFE Sbjct: 4 RILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ALR P+ +L+ S D V GL++GADDY+ KPF ELVAR+RA +R Sbjct: 64 VCAALRAESNV-PIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + I DL +++ V I LT E+ ++ L+ + ++E L ++ Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGYR 221 >gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] Length = 234 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + + Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDAPVE 234 >gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 236 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++ G++ + + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes] gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes] gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes] gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes] gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes] gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes] Length = 233 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 227 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F+V V G + + + D ++LD+ L + G E Sbjct: 3 RLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR K S PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRALR-QKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + ++++ V V G + L KE++++E+ LT+ ++ Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ + G ++ TV G GY Sbjct: 182 VWGSDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGYKFEP 227 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ LK + V + G +E+ + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + DL ++ D + V +I LT E+ ++ LL L++ Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ ++V+I LRKK +G I TV G GYV+RE Sbjct: 181 ILEEVWGYDFPTSGNALEVYIGYLRKKTEE-SGEPRLIHTVRGVGYVMRE 229 >gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ ++ Y+ D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G+L + DA VE G +I LT +E++++ L+ +T+ Sbjct: 123 VKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV + +LR+K+ + + T G GY +++ Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQP 235 >gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 228 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIRKDSNV-PVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V +++ ++ V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G +ETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226 >gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 277 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 6/235 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 43 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 102 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R + TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 103 ICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 162 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ V SV+ A+ V G RI LT +E+ ++ + ++ L Sbjct: 163 LARDSRVDAGTLDVAGLSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDLL 222 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 223 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDAP 277 >gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 238 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + L+ E + + + GE ++ ++ I+LD+ L + G E Sbjct: 7 RILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR +TPV +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RRS Sbjct: 67 VCTRLR-QTKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV +L + DA V G I LT KEY+++ L++ + ++E Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L +++ +++ +D + +LR+KL+ I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLE 235 >gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ L + L L E ++V GE+G+E K FD +ILDL L I G + Sbjct: 4 ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDGLTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 + +R + + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA+ RR Sbjct: 64 CKEVR-SFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTSP 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I GD+++N+ K V+ G I LT KE+ ++ LL+ +K+ ++ ++ Sbjct: 123 FVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++V I KLR+K+ + +I T WG GY ++ Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225 >gi|312138612|ref|YP_004005948.1| two component system response regulator [Rhodococcus equi 103S] gi|325676321|ref|ZP_08156000.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311887951|emb|CBH47263.1| two component system response regulator [Rhodococcus equi 103S] gi|325552882|gb|EGD22565.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 228 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V + G D +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYTVDLAVDGMDALEKVAASRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + DL+++ + V G I LT E+ ++E+L L++ L Sbjct: 121 PAAGDDSEAMTFEDLTLDPVTREVTRGGRSISLTRTEFALLEMLMANPRRVLSRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 225 >gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+LL++D++A+ H + +L+ E F + +E C+ Y +D I+LD+ L D GF Sbjct: 5 RLLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVMLPDRSGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ +R P+ L+ S+ DK+ G GADDYI+KPFN E+ ARI+A +RR Sbjct: 65 DICPLIR-ETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q++ G + +N A V V G RI L + YQ++ LS N +K Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 H++ E + V I KLR+K+ + +I TV G GY Sbjct: 184 HVWGEEGFGEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGYKFVPEG 232 >gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + + + G+DG++ ++D IILD+ L + GFE Sbjct: 3 RILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R ++ P+ I+S + DK+RG GADD+++KPF+ ELVAR +A + R Sbjct: 63 ICKTIR-ERLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYER 121 Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ D ++N + V V + LT KE++++ ++ N +K+ Sbjct: 122 FKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSKDQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I ++R+KL +IETVWG GY Sbjct: 182 FEKIWGLDSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGYRF 228 >gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 236 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + G + IE + D IILDL L + G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEVR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S I GDL + DA + +G I LT +E++++ L+ +T Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 235 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ +A + L L+ E + V G G+EL + + D ++LD+ L + G+ Sbjct: 4 KVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMDGWS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R TPV +L+ EDKV GL+ GADDYI KPF +E++ARI A++RR Sbjct: 64 VLKKIR-ESDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGA 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + L +NLD+ + V G R+ KE +++ L+ N T+ L+ Sbjct: 123 EEEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+KL + ++TVWG GY Sbjct: 183 VWGFDYFGDSRTVDVHIKRLREKLEGV-SEQWSLKTVWGVGYKFE 226 >gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] Length = 282 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 49 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 108 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 109 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 168 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + +++ A+ V G R+ LT +E+ ++ + ++ L Sbjct: 169 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 228 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 229 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 282 >gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 236 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +A I+ L+ E+F+ V G ++L + E D IILDL L + G Sbjct: 1 MKILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D+V GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EVCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRR 120 Query: 119 SRGH---AQSLIVTGDLSVNLDAKTVE-----VQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S H ++ T V+LD + + LT E+ ++ + Sbjct: 121 SLRHGGTQNNVYETSHFMVDLDKHSAIKKADNNTEEILELTTLEFNLLSTFMSYPGRVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ L+ + +++D + +LRKK+ +I+TV G GY + Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHVRRLRKKIEPKTANPTFIKTVVGVGYKFEDE 234 >gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei 87.22] gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces scabiei 87.22] Length = 244 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D +E Y D +ILD+ + + G Sbjct: 12 RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 72 AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSTY 131 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DL ++L + V + LT E+ ++E+ LT+E Sbjct: 132 ATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 244 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + ++ + ++ D +LD+ L D+ GF Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR A PV L+ EDK+ GL G DDY++KPF+ +E+VARIRA++RR+ Sbjct: 69 VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ DL ++ DA V G + L+ E++++ L + N L+K L+H+ Sbjct: 129 LDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I++ +I LR+K+ + G + I T G GY+LR Sbjct: 189 WEYDFNGDASIVESYISYLRRKI-DVGGHEKMIHTKRGVGYMLR 231 >gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 22/242 (9%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ +A I L L E + + G + ++L + Y D ++LD+ L + G++V Sbjct: 6 ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +TP+ +LS + DKV GL+ GADDYI KPF+ ELVAR+ A++RRS Sbjct: 66 CTEIR-KTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124 Query: 123 AQSLIVTGDLSVN-------------------LDAKTVEVQGHRIHLTGKEYQMIELLSL 163 + T + + + + TV +GH + + KE +++ LS Sbjct: 125 ESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLSS 184 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 R N T+E L+ L+ + + +DV I +LR+KL+N I TVWG GY Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGYKFEW 242 Query: 224 NA 225 A Sbjct: 243 RA 244 >gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 235 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD +A IE +L V G G+ + + E+DA+I+D L + G Sbjct: 11 KVLVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEKDGLT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ R A +TP LS + +++KV+GL++GA+DY+ KPF EL AR+ A+ RR Sbjct: 71 LLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQTN 130 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL +NL + V G +I L +E++++E L +T+ M L ++ Sbjct: 131 AEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ ++TV G GY L+ Sbjct: 191 DYNFDPQTNVIDVHISRLRAKIDKEFAEP-LLQTVRGAGYRLQ 232 >gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 224 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 111/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 4 ILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPIMDGWTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 64 CKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G++ ++ V + L KE++++ L+ T+E ++ ++ Sbjct: 124 STQTVHFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ + IETV G GY L Sbjct: 184 YAGDDRTVDVHIKRLRERFAETPD--FRIETVRGLGYRLE 221 >gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes] gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes] gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes] gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes] gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes] gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes] gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1] gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1] Length = 238 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + L+ EN+ + + GE +EL E+D I+LDL + + G E Sbjct: 6 KVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K STPV +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCKELR-QKKSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSK 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L+++ DA V G ++LT KEY+++ LS + +E Sbjct: 125 TSYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDREH 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ + I TVWG GY N + Sbjct: 185 LLKEVWHYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVNNE 238 >gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58 RILL+EDDK++ ++ L SE F V G ++ + D IILDL L + Sbjct: 13 RILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E+ R +R + TP+ ILS + D+V GL+ GADDY++KPF EL+AR RA++RR Sbjct: 73 GLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRR 132 Query: 119 SRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S+ + + + + + L+ V I L+ KE++++EL +++ Sbjct: 133 SKRNKKYIENSKTVLEFNHIKMFLEECRVTSFDREITLSPKEFKLLELFMKNPKRVWSRD 192 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L +++ + K +DV + LR+KL +++TV G GY Sbjct: 193 LILEKIWEIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241 >gi|90425706|ref|YP_534076.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107720|gb|ABD89757.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris BisB18] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 168/229 (73%), Positives = 200/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEEEA 229 >gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E + V+VT G+ ++ + + D ++LDL L +I G + Sbjct: 5 KILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGLD 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R P+ +L+ D++ GL+ GADDY++KPF+ ELVAR++AI+RR+ Sbjct: 65 ICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRRT 124 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + I G++ ++L+ V + +++ T KE++++ LL+ LT+ L Sbjct: 125 GSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRE 223 ++ + + +DV I + R+KL+N YIETV G GY +E Sbjct: 185 KEIWGYGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRFKE 233 >gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143] gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143] Length = 235 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 ASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 131/224 (58%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ +++ +N V G + E+ Y+ D ++LD+ L + G + Sbjct: 7 KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV GL+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIRKEYET-PVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ V DL++++++ TV +G I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + + +DV + +LR+KL GG N+ IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGYKFE 226 >gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 235 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ + + L+++ +NV +TD G++G+E C+ D ++LDL L DI G +V Sbjct: 5 ILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDIDGIDV 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + ++ + + P+ +L+ S DK+ GL+ GADDYI+KPF+ EL+ARI+ ++RR Sbjct: 65 CKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRRSK 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I GD++++ + V + LT KE+++++LLS + LT++ L+ + Sbjct: 125 NETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLLDKV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +DV I LRKK+ + YIETV G GY L++ Sbjct: 185 WGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229 >gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] Length = 272 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G G+ L + +DA+ILDL L + G E Sbjct: 39 RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 98 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 99 ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 158 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 159 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 218 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 219 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPEQRDA 272 >gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 7/231 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++D+ + L+ F+V G + L + I+LDL L + Sbjct: 1 MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMD 60 Query: 59 GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G +V RALR ++ P+ +L+ D++ GL+ GADDYI+KPF+ ELVAR+RA++ Sbjct: 61 GLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120 Query: 117 RRS--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RR +I G L+++L+ + V I LT E++++ +L+ T+ Sbjct: 121 RRIEGHLQPTKVIQAGRLTIDLERRIVRRDNEIIELTATEFELLTILASAPGRPFTRAQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLREN 224 L+ +Y+ + ID I LR+K+ G I TV+G GY E Sbjct: 181 LDRIYNTNYIGFDRTIDAHIKNLRRKIEPDPNGPPRLILTVYGVGYKFAEP 231 >gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 234 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD+++A L+ F V + G+ G++ E+D I+LDL L I GFE Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R K + PV ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 VLRKVRAEKDT-PVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYER 121 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L + A+ V ++LTGKE+ ++ L+ N TKE Sbjct: 122 LTGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIET+WG GY Sbjct: 182 RIWGMDSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGYRF 226 >gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 228 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA +EL L SE + V V G G+ L + D +LD L + G E Sbjct: 4 HILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR S PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 64 ICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ DLS+N + V I LT KE+ ++E L T++ L ++ Sbjct: 124 TDEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL K I TV G GY LRE Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEEH-NEKRLIHTVRGVGYALRE 224 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A + L E + V + G +++ + D ++LDL L I G EV Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A P+ +L+ +I D+V GL++GADDY+ KPF EEL+ARIR +RR + Sbjct: 64 ARRLRAASDV-PIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G L+++L A V + R+ LT KEY ++EL LT+++ + ++ Sbjct: 123 DAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL A G I TV G GY+LRE Sbjct: 183 NFGGESNIIEVYVRYLRQKLE-AHGEPRLIHTVRGVGYILREE 224 >gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + G + ++L DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTSP 123 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL+++ + V I LT E+ ++E+L LT+ L Sbjct: 124 VDGDGESAAMTFSDLTLDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTRSRILEE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 184 VWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 228 >gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 237 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V G + + + D ++LDL L + G E Sbjct: 3 RILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR PV +L+ DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRELRSRGDV-PVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 ++ G ++++++ V V+G + KE+ ++E L L Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 T+ ++ ++ + K +DV I ++R K+ G I TV G GY + Sbjct: 182 TRGQLIDRVWGSDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGYKFAD 235 >gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 229 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR G Sbjct: 64 CKQLRTRSGV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGD 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + +++D TV V G + L KE+ ++E L LT+ ++ Sbjct: 123 ELDGNGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIEADPAKPEHLVTVRGLGYKLE 228 >gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] Length = 238 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD +A + L L+ E + + G+ + + +DA+ILDL L + G E+ Sbjct: 5 ILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVDGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 65 CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124 Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+L++ LS++ ++ V+++G + LT +E+ ++ + ++ L Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLALLE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++ + E ++ I +LR K+ + I TVWG+GY +++ Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKFAPMSQEVAP 238 >gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 227 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DDK + + L L+ E F V G+ ++ + +ILD+ L I G Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIMLPGIDGIA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ DKV L+ GADDYI KPF+ +EL+AR++A++RR Sbjct: 66 LCREVR-KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V+L V +G + LT KE +++ L N T++ L +++ Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+K+ + K + TVWG GY N Sbjct: 185 GYDYMGDSRTVDVHIKRLREKIGDGTNWK--LTTVWGVGYKFEVN 227 >gi|153008899|ref|YP_001370114.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|223635103|sp|A6WZ81|CTRA_OCHA4 RecName: Full=Cell cycle response regulator CtrA gi|151560787|gb|ABS14285.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 232 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 168/227 (74%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL +G ++YIETVWGRGYVLRE + Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLREPDAE 227 >gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] Length = 228 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + L L E +NV + G + D ++LD+ + + G+E Sbjct: 5 KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDGWE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DKV GL+ GADDYI KPF+ +E+ ARI+A++RRS Sbjct: 65 VCRKIRAKDNT-PIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTK 123 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L ++++ ++V+G + KE +++ L+ N T++ L+ ++ Sbjct: 124 EEDNKGVYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + IDV + +LR+KL A K ++TVWG GY Sbjct: 184 GFEYYGDSRTIDVHVKRLREKLE-GASDKWNLKTVWGVGYKFE 225 >gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 63 VCRQLR-QRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S + G + ++++ V V G ++ L KE++++E+L LT+ ++ + Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGYKFEP 226 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ LA +E+ L+ E + V G G+E ++D ++LD+ L + G E Sbjct: 4 KILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV +L+ S+ DKV GL SGADDYI+KPF EEL+ARIRA +R+ Sbjct: 64 VLRRLRRESDL-PVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H S++ G+L+++++ V V+G + LT KE+ ++ L K LT+E L+ ++ Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWGF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +DV+I LR K+ A G I TV G GYV+RE+ Sbjct: 183 DFVGETNSVDVYIRFLRSKIDEAFGI-KLIHTVRGVGYVIRES 224 >gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + L+ E F+V G + + L + + D ++LD+ + GFE+ Sbjct: 5 ILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPDGFEI 64 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R + PV +L+ D+V GL GADDY+ KPF+ EL+ RIRA+ R + Sbjct: 65 CRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRRGT 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ + + DA T E G + LT E++++E L + T+E LN ++ Sbjct: 125 RSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D + +LR KL +AA +ETV G GY ++E Sbjct: 185 GYSFEGYARTVDTHVRRLRAKLGHAAS---MLETVRGVGYRIKE 225 >gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +ILLIEDDK++ ++ L SE F V G ++ +FD I+LDL L + Sbjct: 13 KILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLN 72 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E+ R +R ++ TP+ ILS + D+V GL+ GADDY++KPF EL+AR RA++RR Sbjct: 73 GLELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRR 132 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +++I ++ + + V I L+ KE++++EL +++ Sbjct: 133 SKRGKEKKQKIETIIEYKNIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRD 192 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L ++ + K +DV + LR+KL I+TV G GY Sbjct: 193 LILEKIWAIDFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRF 241 >gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 230 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A I+L L+ E + + G +G+ + +++D ++LD+ L ++ G E Sbjct: 5 RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R TPV +L+ ++ DKV GL GA+DYI+KPF EEL ARIR +R Sbjct: 65 VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + T G+L VN + V + I LT KEY ++ + KN L+ E L Sbjct: 125 TSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + I+ V+I LRKK+ +A YI+TV G GY+L+E Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKI-DAPFSTPYIQTVRGVGYMLKE 230 >gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G++ +E+ + + D +ILDL L ++ G + Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A++RRS Sbjct: 63 VARTIR-KTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + GDL + DA V+ G + LT +E++++ L+ +T+E Sbjct: 122 IPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232 >gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 228 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +D+ A+A I+ LK E + GE+ +E+ K E+D +ILD+ + + GFE Sbjct: 3 RVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR PV +L+ D+V GL+ GADDY+ KPF+ EL+AR++A +RR Sbjct: 63 TLRELR-KFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRREV 121 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +S+ V GDL ++L V+ +G I LT +E+++++ L+ + ++E L+ Sbjct: 122 EVKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELLS 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +++ +DV + +LR+K+ + YI TV G GY Sbjct: 182 SVWGYEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGYYF 226 >gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 239 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 R+L++EDD +A + + L E ++V G+ G+ L + DA++LD+ L + G Sbjct: 5 RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R P+ I+S S ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQS + G L ++ A+T V G+ + LT +E+ ++ + + + Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ + + ++ I +LR K+ + TVWGRGY L + A Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235 >gi|168187464|ref|ZP_02622099.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169294662|gb|EDS76795.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 231 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++++ I+L+L+ +NF V GEDG++ +ILD+ L I GF+ Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPVVVILDIMLPGIDGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR S + +L+ + DK++GL++GADDY+ KPFN EL ARI +++RR Sbjct: 66 VCEILRKNYSSIGIIMLTALGQDVDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G+ ++L++K ++LT KE+ ++++ +L+++ L+ Sbjct: 126 SSNTSSDILISGEFKIDLNSKIAYKNDKELNLTPKEFLLLKIFMENIGRSLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR KL + Y++TVWG GY+ +E+ Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231 >gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435] gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 226 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F+ V G + + + + D I+LDL L + G + Sbjct: 4 KILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+ + D V GL+SGADDY++KPF +ELVAR+RA +RRS Sbjct: 64 ICKTIR-RSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +L++++ + TV + LT E+ ++ L + T+E L ++ Sbjct: 123 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + TV G GY Sbjct: 183 KHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 221 >gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA+ I+ L+ E + V + G+ IE+ ++ +ILDL L + G+E Sbjct: 3 RILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ P+ ILS DKV+GL GADDYI+KPF EL+AR+ A +RRS+ Sbjct: 63 ICQNIRIKSTI-PILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I ++ + VE G + L+ E++++ LS ++E + Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + V I +LR+K+ + YI TVWG GY Sbjct: 182 WGFDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225 >gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 228 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + + I LK E +++ G++ +E F+ +ILDL L + G E Sbjct: 5 KILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVEKY-NNSFNLVILDLMLPYVDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV ILS M D++ GL GADDY+ KPF+ ELVAR++A +RR Sbjct: 64 VLRQIRT-VNNAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLRRYVY 122 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + L ++ V + ++LT E+++++ + TK N+ Sbjct: 123 YNEDKHNSLLTYDKLKLDTSNYKVFKENRELNLTPIEFELLKFFLENPDRVFTKAQIFNN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR K+ + YI TVWG GY L E Sbjct: 183 VWKNEYVNDDNTVMVHIKRLRNKIEDNPNNPKYIITVWGIGYKLGE 228 >gi|163758753|ref|ZP_02165840.1| response regulator,controls chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] gi|162284043|gb|EDQ34327.1| response regulator,controls chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 175/236 (74%), Positives = 203/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGSQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+ +AGGKNYIETVWGRGYVLRE + E LE+A Sbjct: 181 GMDEPELKIIDVFICKLRKKLATSAGGKNYIETVWGRGYVLREPDE---SEILESA 233 >gi|110634562|ref|YP_674770.1| two component transcriptional regulator / cell cycle transcriptional regulator CtrA [Mesorhizobium sp. BNC1] gi|110285546|gb|ABG63605.1| cell cycle transcriptional regulator CtrA [Chelativorans sp. BNC1] Length = 249 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 170/226 (75%), Positives = 198/226 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 19 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 79 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 139 GHAQSVITTGDLIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL A+GG+NYIETVWGRGYVLRE + Sbjct: 199 GMDEPELKIIDVFICKLRKKLDMASGGQNYIETVWGRGYVLREPEE 244 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++IED+ + + L+ E + VY G +G + + Y+ D IILDL + G+E Sbjct: 4 RIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIR-QYSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL ++ + V V GH I LT KE++++ +++ ++ Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L +++ E + V + +LR+KL +I TVWG GY + +ET Sbjct: 183 LEQIWNFEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFEPDGGNET 237 >gi|149185450|ref|ZP_01863766.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21] gi|148830670|gb|EDL49105.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21] Length = 231 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 155/227 (68%), Positives = 193/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG++ ++ K+R GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGVAEMDSKIRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRDPNEE 227 >gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E F V+ GE+ +E K + D I+LDL L + G + Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R TP+ ++S S DKV GL+ GADDY++KPF+ EL+ARI+A +RR Sbjct: 63 VAREIR-KTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G+L +N G ++ LT +E++++ L+ +T+E Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV + +LR+K+ + Y+ T G GY Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGY 226 >gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 229 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 PGSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228 >gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 225 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 222 >gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 225 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L E ++V V G G+E+ +D ++LDL L I GFE Sbjct: 3 RILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A P+ +L+ ++ D+V GL++GADDY+ KPF EEL+ARIRA +RR + Sbjct: 63 VARRIRAASNV-PIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQT 121 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +L+++ ++ + V R+ LT KEY ++EL N LT+++ + +++ Sbjct: 122 YQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVWN 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E II+V++ LR+KL G I TV GY+LRE+A Sbjct: 182 YDFGGESNIIEVYVRYLRQKLEAN-GEPRLIHTVRSVGYILREDA 225 >gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V V G + ++L + + D ++LD L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPELEGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV +++ S DKV GL+ GADDY++KPF+ EL+ARI+A +RR Sbjct: 63 VLRQIRTKSQT-PVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTP 121 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G L+++ DA V G I LT +E++++ L+ +T++ Sbjct: 122 VVGQNVMDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + ++R+K+ + T G GY L+ + + Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLKASEE 233 >gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 225 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + ++ L+ F+V + G +G+ L + ++D I+LD+ L + G+ Sbjct: 1 MHILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVMLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ + D+VRGL+ G DDY+ KPF E +AR+R + RR Sbjct: 61 AVLKVLR-ATHATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL R+ L++ ++++D Sbjct: 120 PRESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++V I +LR K+ + A I+TV G GYV+ D Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIQTVRGVGYVIEAKDPD 225 >gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 232 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +DD +A IE+ LK E + V GE IE+ + D ++LD+ + + Sbjct: 1 MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R + P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRTK-QNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q + G + ++ + +TV V G RI LT KE+ ++ LL+ + Sbjct: 120 RFLTLNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSL 179 Query: 172 EMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + + V I LRKKL I+T+WG GY Sbjct: 180 ENIFQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230 >gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 229 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+++ F V GE ++L + D ++LD+ L I G E Sbjct: 3 KVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A V +++ + DK+ GL GADDY++KPF+ E+ AR++A++RR RG Sbjct: 63 VLRRLR-AVSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRRDRG 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LS++L + V G + L+ E+ ++ L+ ++ L + Sbjct: 122 GRTGEDVVLRFRGLSIDLAGREVHADGAPVALSSLEFDLLAALAGAPGRVFSRAQLLERV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++DV I LR +L + A I TV G GY Sbjct: 182 WGYDFYGDERVVDVHIRSLRSRLGDPAADPRLIATVRGVGYKFV 225 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|227823287|ref|YP_002827259.1| two component response regulator [Sinorhizobium fredii NGR234] gi|227342288|gb|ACP26506.1| two component response regulator [Sinorhizobium fredii NGR234] Length = 233 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIATGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE ++ YLETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREPDGND---YLETA 233 >gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 248 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 25 VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 84 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 85 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 144 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ L+ L+++ L ++ Sbjct: 145 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 204 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + DVF+ LR+KL G I TV G GYVLRE A Sbjct: 205 YDFDVDTNVADVFVSYLRRKLERD-GLPRVIHTVRGIGYVLREEA 248 >gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] Length = 223 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD A+ + L +E V G++ L D ++D L G Sbjct: 3 RVLIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALL--PRADVAVMDWMLPGAAGPV 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R A + P+ +L+ EDK+ GL+ G DDY+ KPF+ E+VAR+RA++RR Sbjct: 61 LAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGV 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H L+++L +TV V G + L+ E+ ++ L+L T+E L L+ Sbjct: 121 HQDVRS--DSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWGP 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++DV I LRKKL + YIETV G GY RE Sbjct: 179 DFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRFRE 220 >gi|158319439|ref|YP_001511946.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139638|gb|ABW17950.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++++ + L +EN+ + GE+ +E + FD IILD+ L D GFE Sbjct: 5 KILIIDDEESIRKLVRRSLINENYLIEEASNGEEALERLRNNTFDLIILDVVLGDEDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ ++V I TP+ +SG D++ GL GA +YI+KPF+ L A ++A +R SR Sbjct: 65 LIQEIKVLGIKTPIIFVSGRCEDHDQILGLGLGATNYITKPFSPAILCAHVKAQLRTSRE 124 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + I+ G +L + I L+ KE +I+ TKE Sbjct: 125 YVAEKTRSSNYIMEGPFKFDLKTYKLYKNNEFIELSSKENLLIKFFMENPGQVFTKEQLY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++++ + I V+I +LRKKL + +I TVWG GY Sbjct: 185 ENIWN-NSIIDDNAIMVYIHQLRKKLEDNVKSPKHIVTVWGIGYKF 229 >gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans 2-40] gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family [Saccharophagus degradans 2-40] Length = 232 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED + + I + L+ +++V G +G+ L FD IILD+ L + G + Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR I TP+ +L+ S D+V GL++GADDY++KPF+ EL AR++A +RR+ Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G+L ++ + + + I LT KE+ ++ ++ ++E Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ + ++ I +LR KL Y+ TVWG GY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family protein [Streptomyces clavuligerus ATCC 27064] gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L E F V T G +EL + E+DAI+LD+ L + G Sbjct: 1 MRILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR +I TPV +L+ D+ GL +GADDY++KPF+ LVAR+RA+VRR R Sbjct: 61 RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL V+ + E G + LT +E+ ++ L+ ++ + K L+H++ Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +V +++V++ LR+K+ + G+ I TV G GY L + Sbjct: 181 -DFEGDVNVVEVYVSALRRKI-DTPFGRRTIHTVRGAGYRLED 221 >gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 230 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD L + L E + + + G + + + ++ +ILD+ + I GFE Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ SS DKV GL++GADDY+SKPF +EL+AR+RA++RRS+ Sbjct: 65 LCRLIRAESSV-PILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL + ++ V G + + KE+ + L + ++E L Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I LR+K+ ++ TV G GY E Sbjct: 184 KVWGYDYPGGTRTVDVHISWLRQKIEVDPSKPRHLITVRGTGYKFEE 230 >gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 235 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I+ L E +++ G + +E + + +I+D+ + + G E Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R K P+ ILS DK+ GL GADDYI KPF+ EL+AR++ +RR+ Sbjct: 65 SMRRIR-EKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ +++ V +G + LT KE ++++L N TK Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKEGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++ + + V + +LR K+ + IETVWG GY L + K Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGDRK 235 >gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 228 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIRKDSNV-PVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V +++ ++ V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G +ETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226 >gi|90419036|ref|ZP_01226947.1| two component repsonse/transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337116|gb|EAS50821.1| two component repsonse/transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 231 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 170/225 (75%), Positives = 197/225 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVNGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATEGKNYIETVWGRGYVLREPE 225 >gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 242 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|182677341|ref|YP_001831487.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633224|gb|ACB93998.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 171/228 (75%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A S+ELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSVELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL VNLD KTVE+ G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGDLIVNLDQKTVEICGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE +E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGRNYIETVWGRGYVLREPNDEE 228 >gi|163850257|ref|YP_001638300.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218528815|ref|YP_002419631.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137328|ref|YP_002961797.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens AM1] gi|254559507|ref|YP_003066602.1| cell cycle transcriptional regulator ctrA [Methylobacterium extorquens DM4] gi|163661862|gb|ABY29229.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218521118|gb|ACK81703.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007294|gb|ACS38520.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens AM1] gi|254266785|emb|CAX22584.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens DM4] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 173/228 (75%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREPVEGE 228 >gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 234 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+A+ S+ L + V + GE+ ++L D ILD+ + G Sbjct: 4 MKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V R LR P+ +L+ S+E++V GL +GADDY+ KPF EEL+AR R++ RR Sbjct: 64 DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + + DL++N + + V +I LT E+ ++ELL L++ Sbjct: 124 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K I TV G GY LRE A Sbjct: 184 LEEVWGYDFPTSGNALEVYIGYLRRKTEAN-NETRLIHTVRGVGYALRETAP 234 >gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 247 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 71 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 246 >gi|239832477|ref|ZP_04680806.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301] gi|239824744|gb|EEQ96312.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301] Length = 232 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 168/227 (74%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL +G ++YIETVWGRGYVLRE + Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLREPDAE 227 >gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 10/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++DDK L + L ++V G G+E+ + F A+ILD+ + + GF Sbjct: 11 IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR PV +L+ M D++ GL+ GADDY+ K F+ EL+AR+RA+ RR R Sbjct: 71 EMLKQLRKQSDI-PVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129 Query: 121 GHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + G+L ++L A+T + G ++LT EY ++ L+ L++ Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + L+ + + + +DV I LR+KL +I+TV GY+ + Sbjct: 190 DQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDP 242 >gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 236 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ LKSE + GE+ + + + D +ILD+ + + G + Sbjct: 7 ILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVMMPKLNGIDT 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 67 CLKIREEREM-PIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125 Query: 123 AQSLIVTGDLSV----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + NL+ V + + + LT E+ ++ LLS + + E Sbjct: 126 NTKHMEDEKEEESIIEIDELIINLETHEVILSNNLVKLTPTEFDILLLLSKNRGKVFSIE 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ + +I+TVWG GY + + Sbjct: 186 NIYESVWNQEFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236 >gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144] gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis] gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144] gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909] gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU144] gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU028] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132] gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819] gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1] gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus] gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819] gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED133] gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus JKD6159] gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03] gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00] gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus CGS01] gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21189] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 233 >gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 254 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57 RIL +ED+ + + L E + GE + + +D ++LDL L + Sbjct: 15 RILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLMLPGL 74 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR TPV +++ ++I D V GL+ GADDY++KPF+ L+AR++A++R Sbjct: 75 DGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALLR 134 Query: 118 RSRGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R R +V G+L ++ D V + GH + LT KE+ ++ L + + Sbjct: 135 RHRHPDAGDDGIVETPPMVHGELVIDSDRHRVTLAGHALQLTAKEFALLALFARHPGHSF 194 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 T+ L+ ++ + ++ I +LR K+ +I+TVWG GY + +D Sbjct: 195 TRGELLDRVWGEEFDGYDHTVNTHINRLRNKIETDPARPRFIQTVWGIGYRFADEERD 252 >gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED L ++ L +E F V + G +G+ +DAI+LD+ L + G+ Sbjct: 1 MRVLVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR AK TPV +L+ D+ GL GADDY++KPF+ L AR+ A++RR Sbjct: 61 DVCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ +T G I LT +E+ ++E L + ++K+ L H++ Sbjct: 121 IPRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +++V+I LR+K+ + IETV G GY L + + Sbjct: 181 EHFDLDPNVVEVYIGYLRRKI-DTPFRVRSIETVRGAGYRLAADGR 225 >gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 226 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 131/227 (57%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDDK +A + LK + V TD G+ G+ + +D +++D L ++ G Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR TPV +LS + ++D+V+GL++G DDY+ KPF+ EL+ARI A++RRS+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++L A+TV+ G I L +E++++E LT+ M L + Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ + T+ G GYVLRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETP-LLHTIRGAGYVLREAA 226 >gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 252 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 20 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 80 VAKAIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 139 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 199 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251 >gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] Length = 223 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + ++L L F+V G+ G++ +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++ R A PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 EVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH +I + + + + V ++ + LT +EY ++EL K+ LT+ LY Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR+KL K +I TV G GY L +N + Sbjct: 181 WDDEVSSNALEVHIYNLRQKLG-----KQFIRTVHGVGYALGKNDE 221 >gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD LA I L E + V + G DG+++ + D +ILD L I G + Sbjct: 4 HILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVISGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR + P+ IL+ I D+V GL +GADDY++KPF+ EEL+AR++A +RR+ Sbjct: 64 LCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTHA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL++N A+ V I LT KE+ ++E + LT+E L ++ Sbjct: 124 QDLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL +A K I+TV G GYVLR+ Sbjct: 184 DFMGDSNIIEVYIRALRVKLE-SANPKRLIQTVRGVGYVLRD 224 >gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755] gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755] Length = 223 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + ++L L F+V G+ G++ +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++ R A PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 EVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH +I + + + + V ++ + LT +EY ++EL K+ LT+ LY Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR+KL K +I TV G GY L +N + Sbjct: 181 WDDEVSSNALEVHIYNLRQKLG-----KQFIRTVHGVGYALGKNDE 221 >gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family [Actinobacillus succinogenes 130Z] Length = 226 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD + + + + L F+V G+ G+E K +DA++LDL L + G Sbjct: 1 MRVLLIEDDPLIGNGLNIGLTKSGFSVDWFTDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ +++++V GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 DILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I + + + V ++ + LT +EY+++EL L K LT+ LY+ Sbjct: 121 GQANPIIEHSLVKFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 ++ ++V + LRKKL K +I TV G GY L +N DET E Sbjct: 181 WDEDISSNALEVHMYNLRKKLG-----KQFIRTVHGVGYALGKN--DETPETT 226 >gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 229 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD I+ L + + V V G+D + ++ IILD L + G Sbjct: 1 MRILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A+ + PV ILS + S++++V+GL+ G DDY+ KPF EL+AR+ ++RR Sbjct: 61 TVLNTLRSAQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A DL ++L + V G I L KE+Q++ L +T+ + Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +P+ +IDV + +LRKK+ +ET+ G GY L E A Sbjct: 181 VWDYDFDPQTNVIDVHVARLRKKVETD-DLPPILETIRGVGYRLVEKA 227 >gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 227 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L +ED+ +A+ + LK + F V D G++G E+D +ILD+ + G Sbjct: 1 MNVLFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMVPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ + ++D++ GL GADDYI+KPF EEL ARI A+VRRS Sbjct: 61 SILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + Q+++ G + ++ + V I LT +E+ ++E L T+ L H++ Sbjct: 121 SNRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 P ++DV I ++RKK+ +IE++ G GY R+ Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPI-DEPVWIESIRGVGYRFRKPE 224 >gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 229 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IED+KA++ I+ L+ + + VY GE+G+ L K + D ++LD+ L G E Sbjct: 3 RIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ I+S + DKV L+ GADDY++KPF E++AR++A +RR Sbjct: 63 ICKEIR-QTKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMT 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +V +L ++L V I LT +E+++++ L K ++E L Sbjct: 122 EGNKAEANEDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + A Y+ T G GY R Sbjct: 182 EKVWGYEYYGDVRTVDVTIRRLREKIEDDASKAAYVLTKRGVGYYFR 228 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L +NV + + G +E+ + +ILD+ + + G Sbjct: 24 MKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VRRS Sbjct: 84 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143 Query: 121 GHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + GDL+++ +++ V G I LT E+ +++LL + LT+ Sbjct: 144 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K G I TV G GYVLRE A Sbjct: 204 ILEEVWGCDFPTSGNALEVYIGYLRRKTELE-GEDRLIHTVRGVGYVLRETAP 255 >gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 230 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + L L+ E F V G+ +++ +D IILDL L I G+ Sbjct: 6 RILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDGWT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K TPV +L+ DKV G + GADDY+ KPF+ EL AR++A++RR Sbjct: 66 VCKKIR-EKYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L ++ A+ V+V G + LT KE+ ++ L+ K +E L + Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ +D I +LR+KL + +YI TVWG GY Sbjct: 185 WGYDFYGSLRTVDTHIKQLREKLGR-SKAASYINTVWGIGYKFE 227 >gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 232 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E+F V GE G+EL ++D ++D L + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A + PV L+ +++D V GL +GADDY+ KPF EEL+ARIRA +R+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQ-N 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++ + H + LT KE+ ++E L + T+ + H++D Sbjct: 120 TPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDE 228 + + +IDV++ LR+KL AAG I+TV G GYV+R A +E Sbjct: 180 IHFDADTSVIDVYVNFLRRKLE-AAGCTGLIKTVRGVGYVIRTPEANNE 227 >gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD +E L +E F V G++ ++L D +ILD+ + + GF Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R A P+ +L+ DKV G + GADDY++KPF+ ELV R+ AI+RR Sbjct: 66 VCGRIRAASAV-PILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S G L +N +TV V LT +E+ ++ L++ T+E L ++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G + + V I +LR+K+ + +I+TVWG GY + Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+ + + I LK+EN+N+ G+D +E F IILDL L I G E Sbjct: 5 KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKY-DNTFQLIILDLMLPYIDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV ILS + D+V GL GADDY+ KPF+ EL AR++A +RR Sbjct: 64 VLRKIR-ENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYIY 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L+ + + ++LT KE+++++ + TK N Sbjct: 123 YNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIFN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +LR K+ + YI TVWG GY L E Sbjct: 183 GVWENDYLHDDNTVMVHIKRLRNKIEDNPNNPKYIVTVWGIGYKLGE 229 >gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DDK + + L L+ + + V + GE+ + + D I+LD+ L I G++ Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ DKV GL+ GADDYI KPF+ +E++ARI+A+ RR Sbjct: 65 VCREIRKKSNV-PIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQ 123 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LSVN+ + V G + KE +++ L+ N T++ L+ Sbjct: 124 SSAESEIKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + + IDV + +LR+KL K ++TVWG GY +E Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGV-SDKWALKTVWGVGYKFEVAETNE 233 >gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 242 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234 >gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 239 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRLDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ R E ++ I +LR K+ I TVWGRGY L + + Sbjct: 186 NAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 239 >gi|304393343|ref|ZP_07375271.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130] gi|303294350|gb|EFL88722.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130] Length = 234 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 170/231 (73%), Positives = 200/231 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 2 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSG++ IEDKVRGL GADDY++KPF+K+ELVARI+AIVRRS+ Sbjct: 62 EVLRTLRLSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 122 GHAESIITTGDLKVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKL++A GG N+IETVWGRGYVLRE E E Sbjct: 182 GMDEPELKIIDVFICKLRKKLASATGGTNFIETVWGRGYVLREPEGAELAE 232 >gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +DD +A IE+ LK E + V GE IE+ + D ++LD+ + + Sbjct: 1 MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R + P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRTK-QNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q + G + ++ + +TV V G RI LT KE+ ++ LL+ + Sbjct: 120 RFLALNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSL 179 Query: 172 EMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + + V I LRKKL I+T+WG GY Sbjct: 180 ENIFQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230 >gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 234 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 73 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 231 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A + L E +NV + G +E+ + D ++LDL L I G EV Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A P+ +L+ ++ D+V GL++GADDY+ KPF EEL+ARIR +RR + Sbjct: 64 ARRLRAASDV-PIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G L+++L A V + R+ LT KEY ++EL +T+++ + ++ Sbjct: 123 DTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL A G I TV G GY+LRE Sbjct: 183 NFGGESNIIEVYVRYLRQKLE-ARGEPRLIHTVRGVGYILREE 224 >gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD + + L+ E + V + + G +EL + D ++LD+ L ++ G + Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + P+ +LS + D+V GL+ GADDYI+KPF+ EL+ARI+A +R Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 120 RGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R ++ GDL + ++ V ++G ++ LTGKE++++ + R N ++E L Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV I LR KL + + IE+V G GY L N Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVS---PIIESVRGVGYRLAVN 227 >gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] Length = 237 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E ++V G + +E+ D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + STPV I++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 121 Query: 122 HAQSLIVTGDLSV----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +GD S DA TV G + LT +E+ ++ L+ R LT+ Sbjct: 122 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E L ++ +V+ +DV + +LR+K+ ++ + T G GY ++ ++ Sbjct: 182 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 235 >gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] Length = 234 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD ++H I++ L + + V + G +G E+ FD IILD+ L ++ G Sbjct: 5 KVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEMDGIA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR TP+ +++ S DKV GL+SGADDYI+KPF E +AR++AI+RR Sbjct: 65 ICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMRRQDQ 124 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L ++ + V + R+ LT KE+ ++ L++ + ++ L Sbjct: 125 FNMVASKEADQLQFNSLEIDEKKRKVLLDEKRMDLTPKEFDLLVLMAKNPGRSYSRGELL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ I +LR K+ N+I T WG GY + Sbjct: 185 ELIWGYDFSGYEHTVNAHINRLRAKIEKDPNNPNFILTTWGVGYRFNDE 233 >gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4] Length = 234 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 116/236 (49%), Gaps = 10/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M+IL++ED++++ IE+ E + G++G L + +D I+LD L + Sbjct: 1 MKILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R +R + PV +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRRR 120 Query: 119 SRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKE 172 + ++ + + + Q I LT KE+ ++ T+E Sbjct: 121 YEEIQPKGASLHYKESTYFKISKETREIFYQDTAIDGLTPKEFDLLYYFIHHPKQVFTRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ ++ + + +DV I +LRKK+ A +I TVWG GY E +E Sbjct: 181 QLLDRIWGYEYYGDERTVDVHIKRLRKKIRTATH--PFIHTVWGVGYKFDETVVEE 234 >gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RRS Sbjct: 63 VARTIR-KTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G+L + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+++LA + +L+ E F + + G + + + D ++LDL L + G E Sbjct: 3 HVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 ICKTIRAKSAV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGV 121 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A G + +++ TV V G + L KE+ ++E L LT+ + Sbjct: 122 VADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGYKFEP 229 >gi|260433792|ref|ZP_05787763.1| cell cycle transcriptional regulator CtrA [Silicibacter lacuscaerulensis ITI-1157] gi|260417620|gb|EEX10879.1| cell cycle transcriptional regulator CtrA [Silicibacter lacuscaerulensis ITI-1157] Length = 238 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 158/227 (69%), Positives = 187/227 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGRIAVNLDAKTVEVDGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQGD 227 >gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 249 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 3/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L + V + G + + D ++LDL L + G E Sbjct: 22 RVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGLE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 82 VCRRMRGR-GPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 140 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + L+++ A+ G + LT +E+ ++ ++E + ++ Sbjct: 141 VTAPRPLHASGLALDPAARRATKDGEELALTIREFDLLAFFLRHPGRAFSREDLMREVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + V + +LR K+ + I+TVWG GY + E Sbjct: 201 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFGTTPRQEA 248 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + ++ + ++ D +LD+ L D+ GF Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A PV L+ EDK+ GL G DDY++KPF+ +E+VARIRA++RR+ Sbjct: 69 VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL ++ DA V G + L+ E++++ L + N L+K L+H++ Sbjct: 129 LDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ + G + I T G GY+LR Sbjct: 189 EYDFNGDASIVESYISYLRRKI-DVGGREKMIHTKRGVGYMLR 230 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ++ + L+ F V G + ++L + + D ++LD+ L D+ GF Sbjct: 11 RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR + PV L+ DKV GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 71 VTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGG 130 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +V DL + D+ V G + L+ E++++ L L N L+K L+H+ Sbjct: 131 VDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E I++ +I LR+KL I T G GYVLR Sbjct: 191 WDYDFNGEAGIVESYISYLRRKLDTEGLEP-LIHTKRGVGYVLR 233 >gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220 >gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA + L+ + V V GE L FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A+ + PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V + G + LT E++++ +L R +++ ++H+Y Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDVFI +LRKKL IETV G GY L + Sbjct: 181 QDFDRDSNTIDVFIARLRKKLP-----PGTIETVRGLGYRLAD 218 >gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W] gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W] Length = 229 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + LK+E + + + +E + D IILD+ L + G E Sbjct: 6 KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPKMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ LS DK++GL SGA+DYI+KPFN EL+ARI++ +RR R Sbjct: 66 ACLKIR-EQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q + G L V+ + V ++ + LT KE+ ++ LL K + E Sbjct: 125 YQTEEVKQFIHEIGHLKVDEKTRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ + V I K+R+K+ Y++TVWG GY Sbjct: 185 MVWEDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall processes YvrG [Bacillus subtilis subsp. subtilis str. 168] gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall processes [YvrG] [Bacillus subtilis subsp. subtilis str. 168] gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] Length = 237 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ I+ +L+ E + + E+ I + K + D I+LD+ + + GFE Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 66 ACTLIR-EYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 124 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + V G + + + Q+++ N L+K+ Sbjct: 125 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I KLR+K+ YI TV G GY N + Sbjct: 185 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 233 >gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes] gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes] gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes] gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes] gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes] gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes] gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes] gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes] gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes] gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes] gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes] gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes] gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes] gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes] gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes] gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes] gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes] gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes] gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes] gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes] Length = 233 Score = 188 bits (477), Expect = 6e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCREIRSKAAT-PIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ L++NL +V GH + + KE +++ L+ N T+E Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWN--ISTVWGIGYKFE 231 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 133/239 (55%), Gaps = 6/239 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E + V G + L + + DA++LD+ L D+ G E Sbjct: 20 RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ Sbjct: 80 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 139 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++L V GDL+++ +++ V G +HLT E++++ L+K L+ Sbjct: 140 TTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 +++ + ++++++ LRKK+ AG I T+ G GYVLR D T+ Sbjct: 200 VWNYDFGGQANVVELYVSYLRKKI--DAGRPPMIHTMRGAGYVLRPAETDYPVRPEGTS 256 >gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V ++G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220 >gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] Length = 226 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ALA + ++L+ E F + G IE + + D ++LDL L G + Sbjct: 4 KILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL+SGADDYI KPF +ELVARIRA +RR Sbjct: 64 VCREIRAESRV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD+++++ A TV G I LT E+ ++ L+ + T+E+ L H++ Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGYK 221 >gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 242 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 12/242 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +LL++D++ + ++ L E + + + G ++L +D I+LD+ L + Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R I TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR Sbjct: 61 GIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRR 120 Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + D + + V ++LT KE++++ L N T Sbjct: 121 TDKEDNRQNDRERFAEESWIINDFLIYPERHEVYKDKILLNLTPKEFELLLYLVKHPNMT 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LT+E L ++ E +++DV I KLR+K+ + I+T+ G GY +E +E Sbjct: 181 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKNPKCIKTIRGYGYQFKEKQDEE 240 Query: 229 TC 230 Sbjct: 241 KS 242 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L+S ++ G+ Y+ D ++LD+ L + G + Sbjct: 7 KILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDYI KPF +EL+ARI+A++RR Sbjct: 67 VLKWIRKECET-PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V ++++++ V + + I + KE++++ L+ N T+E L ++ Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + + +DV I +LR+KL GG N+ IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGYKFE 226 >gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 247 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G D + + D ++LD+ L D GF Sbjct: 16 RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV L+ ++ED++ GL +G DDY++KPF+ +E+V R+RAI+RR R Sbjct: 76 VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 135 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +L +A V G + L+ E++++ L + +++ L+ Sbjct: 136 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 195 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + ++++ +I LR+K+ + I T+ G GYVLR ++ Sbjct: 196 VWNYEFGGDSRVVESYISYLRRKI--DSTAPPLIHTIRGVGYVLRLPPDEQ 244 >gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ + V V G DG L + FD +ILD+ L + G+ Sbjct: 1 MRILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R TPV L+ ++ED+VRGL+ GADDY+ KPF+ EL+AR+R ++RR Sbjct: 61 QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V QG RI+LT KE+ ++ LL R+ L++ + ++ Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LR K+ + I TV G GYVL +A Sbjct: 181 MNFDSDTNVVDVAIRRLRAKV-DDPYPLKLIHTVRGMGYVLDVSA 224 >gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 230 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L K +D I+LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 233 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RRS Sbjct: 63 VARTIR-KTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G+L + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 255 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 120/243 (49%), Gaps = 23/243 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ E V G + + L + D I+LDL L G + Sbjct: 4 KILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEEQPDLILLDLMLPVKDGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRTRLHM-PIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHLRRQQK 122 Query: 122 ----------------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159 + + +L ++ D V G + LT +EY+++ Sbjct: 123 TSEAAASSLDNANAGDNGQGAADEKQGLKLFNLFIDTDMYVVYKDGEPLDLTHREYELVY 182 Query: 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +T+E L ++ +V+ +DV I +LR+K+ + YI T G GY Sbjct: 183 YMARNSGKVMTREHLLQAVWGFEYFGDVRTVDVTIRRLREKIEDDPSRPEYIMTRRGLGY 242 Query: 220 VLR 222 ++R Sbjct: 243 MMR 245 >gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein [Campylobacter concisus 13826] gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus 13826] Length = 219 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I LK ++V GE+ ++ +D I+LDL + + G Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ R AK+ TPV IL+ ++D V+GL +GADDY+ KPF+ +EL+AR+R ++RR+ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S I G+L ++L K+VE G +I LTGKEY+++E L L K LT++ H++D Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +IDV I +RKKL I+T G GYV+++ Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA----IQTKRGLGYVVKD 219 >gi|257464207|ref|ZP_05628587.1| DNA-binding response regulator [Fusobacterium sp. D12] Length = 226 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + + I K E + V G + ++ K FD +ILD L + G Sbjct: 1 MKVLIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGS 60 Query: 61 EVLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 ++ + +R V +++ + ED + G GAD+Y+ KPF+ EL+AR + +++ Sbjct: 61 QLTKIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQ 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H+++ L ++ V +G + L+ KEY ++ L + + +T+E L+ Sbjct: 121 NKIPHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV+I KLR+KL G I+TV G GY L E Sbjct: 181 VWGSTYYIGDRTVDVYISKLREKL---PGISTSIKTVKGVGYKLEE 223 >gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 224 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ G+E Sbjct: 3 KILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIMMPNMDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ KV+G Q G DDY+ KPF+ ELV R++A+++R + Sbjct: 63 LCYELR-RYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V V I L KE++++ +L + T ++E + ++ Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K I+T+ G GY L Sbjct: 182 DFEGNERTLDVHINRLREKFQKETASFA-IKTIRGLGYRLE 221 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K + + L E + G+ G++L + D ++LDL L + GF+ Sbjct: 4 RILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R++R +TPV +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRREM 123 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G +SV+ D G + LT +EY+++ L+ R ++E Sbjct: 124 AGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSREA 183 Query: 174 FLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++++ +V+ +DV + +LR+K+ + I T G+GY+L Sbjct: 184 LMENVWNYEGYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLL 232 >gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 254 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251 >gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 239 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +LL++D+ ++ +E+ L+ E F + GE+G+ L + D ++LD+ L D+ GFE Sbjct: 4 LLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVMLPDLEGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + + P+ L+ S+ DK+ GL G DDYI+KPFN E+VAR++A +RR + Sbjct: 64 VCRRLR-SFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQQL 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G ++ A + V+G + +E+Q++ L N +K Sbjct: 123 AGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQLY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + V + +LR+K+ Y+ TV G GY L + Sbjct: 183 EQVWGEESLGEDNTVMVHVRRLREKIEPDPAKPRYLVTVRGLGYKLLPPEE 233 >gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 227 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +++ + L+ E + VY + G +EL EF+ IILDL L DI G E Sbjct: 3 KILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPDIQGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + + +R + + S++ED++ GL +GAD+Y+ KPF+ ELVAR+ ++ RR S Sbjct: 63 ICKIIRNKSDVYIFMV-TAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G+L ++ D++ V+V+G + LT E+ ++ L++ K LT+E ++ ++ Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +RKK+ + YI TV GY Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGYKF 223 >gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] Length = 225 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L ++ F V GE+ +++ + ++LD+ + + G+ Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV +L+ S D+++G G D+YISKPF+ + LVAR+ AI+RRS Sbjct: 65 EVLKTIR-KYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + ++ A V + G I L+ KE++++ + L++E LN++++ Sbjct: 124 MVSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ YI+T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG---EYIKTIWGMGYKFE 222 >gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 222 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ + E + + G++ +E + FD I+LD+ + GF+ Sbjct: 3 KILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R + + PV +++ DK+ G GADDYI+KPF+ +EL+ARI+A+++RS Sbjct: 63 TLSEIRGSCNT-PVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 IV GDL VN+ + TV + G+ + LT KE+ ++ L+ + L++E L ++ Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D I LR++L + + I+TVWG GY Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGYKF 218 >gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp. subtilis str. 168] gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ I+ +L+ E + + E+ I + K + D I+LD+ + + GFE Sbjct: 17 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 77 ACTLIR-EYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 135 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + V G + + + Q+++ N L+K+ Sbjct: 136 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 195 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I KLR+K+ YI TV G GY N + Sbjct: 196 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 244 >gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + I++ L F+V G+ G++ K +DA++LDL L + G Sbjct: 6 MRILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLPGMDGM 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R KI TPV IL+ ++ D+V GLQ GADDY+ KPF E++AR++A++RR Sbjct: 66 DILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ + + +++ V +QG I LT +EY ++EL + K L++ LY+ Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLYN 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR+KL K +I TV G GY L +N + Sbjct: 186 WDDEVSSNALEVHIHNLRQKLG-----KQFIRTVHGVGYALGKNEE 226 >gi|312891216|ref|ZP_07750737.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311296295|gb|EFQ73443.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++I L+EDD+ L + L+ E + V + G+ ++ D ++LD L G Sbjct: 5 IKIALVEDDENLRFLVAERLELEGYKVLEAEDGDKAEKMIMEEMPDIVLLDWMLPGKQGS 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV ++R V +++ + DK+ Q G DYI+KPFN + LVA I ++ + Sbjct: 65 EVCTSIRDKGFDKLVIMMTAKAQDVDKIEAYQFGVSDYITKPFNMDVLVAMIDNKIKFTL 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + + T+ G +I LT E +++ KN + +E + ++ Sbjct: 125 NNEKSESYKFANMEHHPNTHTLLRDGRKIELTILENRILLYFLKNKNKVINREELMMEVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D+ I +LRKK+ N Y++TV G GY Sbjct: 185 GYNADVNTRTLDMHIVRLRKKIENNPDSPQYLQTVRGIGYKFV 227 >gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 227 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 142/228 (62%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I L+ E + V GE+ I + E+DAIILD+ L + GF Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R K P+ +L+ +I+DKV+GL GADDY+ KPF EEL+ARIR ++RR+ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A ++I +L V+LDAKTV G I L+G+EY ++E L K L +E +H+++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +IDV+I LRKK+ + + I T+ G GYVLR + ++E Sbjct: 181 YEYEGGTNVIDVYIRYLRKKI-DDSYTPKLIHTIRGLGYVLRVDNENE 227 >gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes] gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes] gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes] Length = 233 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa] gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa] Length = 239 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ + + + + ++LD+ + + G+ Sbjct: 7 KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+ Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L ++++ + V G RI LTG E+ ++ELL + ++ Sbjct: 126 PTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQI 185 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 LQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGYLFQ 235 >gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 222 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ALA ++ L++ F V GE+G L +DA +LDLGL + G Sbjct: 1 MRILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +K++G +GADDY++KPF +E+V R+RA++RR+ Sbjct: 61 SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+Q + G + ++ + V + G + LT +E++++ L +++ + H+YD Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V I +LRKK+ I+TV G+GYVL Sbjct: 181 RNFDSDSNVLEVMIGRLRKKIGA-----EMIQTVRGQGYVLSAPE 220 >gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 235 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 122/221 (55%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD++L +I +ML+ E F G DG E + D +++DL L + G E+ Sbjct: 15 ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGTEI 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A+++TP+ +LS M DKV L+ GADDY+ KPF EL ARIRA++RR+ Sbjct: 75 CKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRASTD 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A+ ++ ++ V+ + + V+ +G + LT EY ++ + LT++M LN ++ Sbjct: 135 ARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVWGYE 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P + +D + KLR+KL + TV G GY Sbjct: 195 FFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122] gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781] gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719] gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635] gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299] gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115] gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300] gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224] gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948] gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937] gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30] gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3] gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796] gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122] gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781] gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719] gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635] gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299] gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115] gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300] gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224] gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948] gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937] gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3] gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30] gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus TW20] gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796] gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11] gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46] gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus T0131] gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21172] gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21193] Length = 235 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 6 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 66 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 124 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 125 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 235 >gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ +E + E D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 71 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 NGVPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238 >gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 227 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 3/228 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL++ED++ + + L+ E +NVY T G DGIEL K +F +ILDL L DI G Sbjct: 1 MKNILVVEDEENVLEIVRAYLEKEGYNVYCTTQGLDGIELFKKVKFQLVILDLMLPDIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 EV R LR + + +++D++ GL GAD+Y+ KP + EL AR+ A R Sbjct: 61 EEVCRILRRISDVYIFIL-TAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRV 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G+L + D + V ++ +I LT E+ ++ L L K L++E + + Sbjct: 120 FKDENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + IDV I +RKK+ YI TV GY + K Sbjct: 180 FGLDFDGFDRTIDVHIKNIRKKIEEDTKKPKYIITVTKLGYKFGGDIK 227 >gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +LL++D++ + ++ L E + + + G ++L + +D I+LD+ L + Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R I TP+ ++S S DKV L+ GADDY++KPF+ ELVAR++AI+RR Sbjct: 61 GIEVCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRR 120 Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + +L + + + ++LT KE++++ L N T Sbjct: 121 TDKEDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMT 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LT+E L ++ E +++DV I KLR K+ + +I+T+ G GY +E Sbjct: 181 LTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKFKE 235 >gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] Length = 247 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L ++ L + + V + G++ + C+ F+ I+LD+ L G Sbjct: 10 KILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR TP+ +L+ S D++ GL+ GADDYI KPFN EL+ARI A++RR+ Sbjct: 70 ICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRRNTV 129 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + G +NL +T+ + +T E+ ++++ + L++ Sbjct: 130 EFEHPGAPSTEDLVVNFGPFKLNLSTRTLTKNDEPVPMTTGEFAILKVFARHPREPLSRY 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + E + +DV I ++RK + +I+TVWG GYV + ++ Sbjct: 190 KLMELARGKEYENFDRSLDVQISRVRKLIEVNPSYPQFIQTVWGLGYVFVPDPEN 244 >gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 236 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++ED+K + I LK ++V D GE + C+ + D +LD+ L I G EV Sbjct: 6 IYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLPGIDGLEV 65 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R ++ + P+ +L+ + DKV GL+ GA+DYI+KPF+ EL+ARI+ I RR Sbjct: 66 CRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFRRQA 125 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 I G +++++ V + I +T KE+++++LL L K L++E+ L Sbjct: 126 DSVETNPEKIKVGKITIDVARHEVYKEKQLIEMTYKEFELLKLLILNKGIVLSRELLLEK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +DV I LR+K+ + YIETV G GY + Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDDDNSPVYIETVRGVGYRFSD 231 >gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 226 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F+V V G + + + D ++LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR + + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRALR-QRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + T G + ++++ V V G + L KE++++E+ LT+ ++ + Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGYKFEP 226 >gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264] gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264] Length = 229 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + LK+E + + + +E + D IILD+ L + G E Sbjct: 6 KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIMLPKMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ LS DK++GL SGA+DYI+KPFN EL+ARI++ +RR R Sbjct: 66 ACLKIR-EQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q + G L V+ + + V ++ + LT KE+ ++ LL K + E Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ + V I K+R+K+ Y++TVWG GY Sbjct: 185 MVWEDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|148557747|ref|YP_001265329.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502937|gb|ABQ71191.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 231 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 159/230 (69%), Positives = 188/230 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A SIELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDDPTTAKSIELMLGAEGFNVYTTDLGEEGLDLGKLYDYDIIALDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG+ ++ KVR L GADDY++KPF++EELVARI AIVRRS+ Sbjct: 61 DVLKKLRGAKVQTPVMILSGIGEMDSKVRALGFGADDYVTKPFHREELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ + + Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACSGDNYIETVWGRGYVLRDPEEGQVA 230 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V+ G + L + D ++LD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV L+ DKV+GL G DDY++KPF+ EE+VARIRAI+RR+ Sbjct: 71 VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTAP 130 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ D V GH + L+ E++++ L L L+K L+H+ Sbjct: 131 DEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-----KNYIETVWGRGYVLREN 224 + + I++ +I LR+K+ I T G GY+LRE+ Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLLRES 241 >gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + G D ++ Y D I+LD+ + + G Sbjct: 9 RILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGLT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 69 AARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSAY 128 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + GDL ++L + V G + LT E+ ++E+ LT+E Sbjct: 129 AAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTREQ 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 189 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGESRLVHTVRGVGYVLR 236 >gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus SB 1003] gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus] gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus SB 1003] Length = 237 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 154/228 (67%), Positives = 187/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ IL+G E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+ GG+NYIETVWGRGYVLR+ + + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVLRDPDQGD 228 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + + + + E F V + G I + + D ++LD+ + + G E Sbjct: 7 KILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVLDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ +D++ GL+ GADDYI+KPFN E+VAR++A++RR+ Sbjct: 67 VCKQVR-KMSDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAGT 125 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I L +++D V G+++ T KE +++ L+ ++ L Sbjct: 126 QEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLET 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +D I ++R+KL+ K I T+WG GY Sbjct: 186 IWGYSYYGDTRTVDTHIKRIRQKLNIPPDSKWDITTIWGVGYKFE 230 >gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus] Length = 239 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 10 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 70 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 128 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 129 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 189 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 239 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L + L +E+++V GE ++ E+D +ILD+ + G Sbjct: 1 MRILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R PV +L+ S+ED+VRGL +GA+DY+ KPF EEL+ARIR ++RR Sbjct: 61 SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G L V++D V G I L+GKE+ ++ + K L++E HL++ Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +IDV+I LRKK+ + I TV G GYVL+E Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDESFKE-KLIHTVRGAGYVLKEKV 224 >gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 225 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ L E F V V G G L +D I+LD+ L G+ Sbjct: 1 MRVLLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + PV +L+ D+V GADDY++KPF+ LVAR+RA+ RR Sbjct: 61 DVLAGLRRDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G L+++ V I LT KE+ ++ L+ R +K L++++ Sbjct: 121 PERPTVLDVGGLTIDPARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E +++V++ LR+K+ +A G +ETV G GY L E A+ Sbjct: 181 ADFEGNDNVVEVYVGYLRRKI-DAPFGTASLETVRGHGYRLVEAAE 225 >gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDDK + ++L L++E F V GE+ +E+ + E ILD+ + + GFE Sbjct: 4 KILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ ILS + DK+ GL GADDY++KPFN E++AR+++ +RR Sbjct: 64 LTKKIR-EISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++++ G+LS+N ++ + G+ I +T EY+++ LL TK Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + I V I KLR K+ + + YI+T+ G GY + + Sbjct: 183 IYELIKGEYFESDENTIMVHISKLRDKIEDDSKNPLYIKTIRGLGYKIEKQ 233 >gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 236 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++ G++ + + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 227 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD A+ S+ L ++V + D G+ + + D +ILD+ + + G Sbjct: 1 MRVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR A PV +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA+VRRS Sbjct: 61 ETCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSA 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++L + V I LT E+ ++E+ L + L + Sbjct: 121 PGPGASQQLRFSDLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEEV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V++ LR+KL A G I T+ G GY LRE Sbjct: 181 WGYDFPTTANSLEVYVGYLRRKLE-AQGEPRLIHTIRGVGYALRE 224 >gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ V DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] Length = 229 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A + + LK+E F V G + ++L + ++FD +LD+ L D GF Sbjct: 4 KILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDCSGFH 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + + PV +L+ DK+ GL GADDYI+KPFN E+ AR++A +RR Sbjct: 64 LCEEIR-SHYNYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRRYMR 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + N + G +++LT E+ ++++L + ++ + Sbjct: 123 YNSQKRDDNIIDFQGLILNCSTHECTLYGEKLNLTPTEFSILQMLCENRGKVISSQDLFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I ++R+K+ +I+TVWG GY + + Sbjct: 183 SIWKEKYFESNNTVMVHIRRIREKMHEQPRNPKFIKTVWGMGYKIEK 229 >gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 225 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D++ ++L L+ E F V GE G++ + +D +ILD+ L + GF Sbjct: 3 KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R +R + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA++R Sbjct: 63 VCREIRT-FSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +N+ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|170742091|ref|YP_001770746.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168196365|gb|ACA18312.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 174/228 (76%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPTDDE 228 >gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300] gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300] Length = 235 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 239 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 126/236 (53%), Gaps = 10/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +L + LK F+V G+ +++ + D ++LD+ L + G + Sbjct: 3 KVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEESGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K P+ +L+ + DKV GL+ GADDY++KPF+ E++AR+ A++RR Sbjct: 63 VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q G L+++ D V+ G + LT KEY+++ ++ R+ L++E Sbjct: 123 KTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLSRET 182 Query: 174 FLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ ++ P+ +++D+ + LR K+ Y++TV G GY + + DE Sbjct: 183 ILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGYRF-DRSHDE 237 >gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D I+L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYT 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + DA +++ +G I LT +E+++ L+ +T+E Sbjct: 123 QPAQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590] gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590] Length = 238 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 9 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 69 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 127 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 128 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 188 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 237 >gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 225 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR+K + I+T+ G GY L Sbjct: 183 DFEGNERTLDVHMNRLREKFQEE-KSRFSIKTIRGLGYRLE 222 >gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 222 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E LK+ F + V + G D ++ +FD +ILDL L GF+ Sbjct: 3 RILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR P+ IL+ IEDKV GL+ GADDY++KPF EL+AR+RA +R Sbjct: 63 ILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQTL 122 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GD+ ++L + +V I L+ KE+Q++E L +++E L+ + Sbjct: 123 SPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P I+DV++ LRKKL IETV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGGN-----RIETVRGMGYRLCP 222 >gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8] gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8] Length = 245 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A +EL L V V G+DG+ +D I+LD+ L GF+ Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR K TP+ +++ + DKV GL+ GADDYI+KPF+ E++AR++A+ RR Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G + V + + V V+G + LT KE++++ L + +++ Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ ++ + ++ I +LR K+ Y++TVWG GY E + Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum EA 2018] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + I + L +E FNV + G + +E+ K E ++LD+ + + G Sbjct: 6 VLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITT 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +TP+ +LS DK+ GL +GADDYISKPFN EL+AR+++ +RR Sbjct: 66 CMKIR-EDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKL 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G++++N D V++ + LT +E+ ++ LLS K + E Sbjct: 125 NSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I K+R+K+ YI+TVWG GY + +N Sbjct: 185 SVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232 >gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 225 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ ++L L+ E F V GE+G+E + +D +ILD+ L + GF Sbjct: 3 RLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R +R + P+ +L+ D++ G++ GADDY++KPFN EL+ARIRA++R Sbjct: 63 VCREIRT-FSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I GDL +N+ + V +G +I LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+KL + YI T WG GY ++ Sbjct: 182 WGVDFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYMK 225 >gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKEA 220 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + +EL + FD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIREERNM-PIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + GDL+VN D + V ++G + LT KE+ ++ELL+ K L+ Sbjct: 123 YNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 229 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + LK+E + + + +E + D IILD+ L + G E Sbjct: 6 KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPKMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ LS DK++GL SGA+DYI+KPFN EL+ARI++ +RR R Sbjct: 66 ACLKIR-EQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q + G L V+ + + V ++ + LT KE+ ++ LL K + E Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ + V I K+R+K+ Y++TVWG GY Sbjct: 185 MVWEDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] Length = 234 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ G Y+ TV G GY + ++ Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKIDTPSE 234 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A++RR Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + +A +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2] gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2] Length = 242 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L ED++ L + L+ E + V G + +E ++DA+ILD+ + + G+ Sbjct: 19 MRLLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIMMPVMDGY 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV LS SIED+V GL SGA+DY+ KPF+ EL+ARIR ++R S+ Sbjct: 79 AVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLSK 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G SL+ GDL+++ TV I L+ KEY ++E + L KN L++E H++D Sbjct: 139 GSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIWD 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DV+I LRKK+ + A I TV G GYV++E + Sbjct: 199 FDYAGGTNLVDVYISYLRKKI-DGASTCKLIHTVRGSGYVIKEPS 242 >gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVISGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225 >gi|85375673|ref|YP_459735.1| DNA-binding response regulator CtrA [Erythrobacter litoralis HTCC2594] gi|84788756|gb|ABC64938.1| DNA-binding response regulator CtrA [Erythrobacter litoralis HTCC2594] Length = 231 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 159/231 (68%), Positives = 194/231 (83%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG++ ++ K+R GADDY++KPF++EELVARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+ DE E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRDP--DEQSE 229 >gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 230 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L+ ++ L+ E + V G G+E + + D +ILD+ L + GF V Sbjct: 6 ILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVMLPRLDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ IL+ D++ GL+ GADDY++KPF+ EL+AR+RAI+RRS Sbjct: 66 CRILRQESEV-PILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDRR 124 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G + ++ ++ ++L+ KE+ ++ L + L++++ L ++ Sbjct: 125 ISALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I LR+K+ G YI+TV G GY Sbjct: 185 GYDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGYRFEAP 229 >gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 234 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 IAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + ++ + D ++LDL L + G E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +++ S DKV GL+ GADDYI+KP++ ELVARIRA++RR+ Sbjct: 63 VCRELRT-TSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G + +++D V V G I L KE++++E+ LT+ ++ + Sbjct: 122 PTDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGYKFE 225 >gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806] Length = 246 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ +E + E D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 71 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 NGAPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238 >gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R] gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R] Length = 226 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L +E F+ G +E + D I+LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + D V GL+SGADDY++KPF +ELVARIRA +R + Sbjct: 64 ICRLIRQESSV-PIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDLS+++ A TV+ G I LT E+ ++ L+ + T+E L ++ Sbjct: 123 EPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|86751020|ref|YP_487516.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|91978137|ref|YP_570796.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|86574048|gb|ABD08605.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris HaA2] gi|91684593|gb|ABE40895.1| cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris BisB5] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 168/228 (73%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPTEDD 228 >gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115] gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355] gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 233 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G++ +E+ + + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VARTIR-KTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRADL 121 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + G+L + DA + G + LT +E++++ L+ +T+E Sbjct: 122 VVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4] gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4] Length = 229 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +LA + +L+ E F V V G +E + D ++LDL L + G + Sbjct: 3 RVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKRLRM-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAE 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G + ++++ TV V+G + L KE+ ++E L LT+ + Sbjct: 122 AEAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 DRVWGSDYVGDTKTLDVHVKRLRSKIETDPGKPVHLVTVRGLGYKFE 228 >gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] Length = 228 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL LK+EN++V+ ++ + + + D +LD+ + DI GF Sbjct: 1 MNILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R ++ PV +L+ DK+ G GADDYI+KPF ELVAR++A +RR Sbjct: 61 TILRKIR-ETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFT 119 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S D+ +N + + V + I LT E+ ++ L + T ++ E Sbjct: 120 LYNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I LR+K+ +AA YI+TVWG GY + + Sbjct: 180 FQEIWGEKYFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTIEK 228 >gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037] Length = 235 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 PGSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228 >gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 244 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D +E Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + ++L + V ++ LT E+ ++E+ LT+E Sbjct: 132 AAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + AAG + TV G GYVLR+ + Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRQGGAE 244 >gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A + L + F V V + G+ E FD ++LD+GL + GF Sbjct: 3 RILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV IL+ S++D V GL+ GADDY+ KPF EEL+AR+R + R Sbjct: 63 VLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVRLRLVSDRS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L ++L + V G + L+ +E+ + E L++E L+ ++ Sbjct: 123 QEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ LR+KL I TV G GY L E Sbjct: 183 DFDPGSNVVDVYVRYLRRKLGAD-----RITTVRGMGYRLEE 219 >gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ EL+ R++A+++R + Sbjct: 74 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQIT 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 133 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231 >gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 228 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 68 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 127 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 242 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + + L+ E + + G G+ + +DA++LDL L + G E Sbjct: 6 RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G+L + A+ V V G I LT +E+ ++ + ++ L Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN-AKDE 228 N ++ + + ++ I +LR K+ I TVWGRGY L A DE Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKLSPTGAGDE 239 >gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 227 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E F V V G D + +D I+LDL L + GF Sbjct: 1 MRVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A +PV +LS ++ D+VRGL GADDY+ KPF+ +EL ARIRA++RR Sbjct: 61 EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ +TV G + L+ KE+ ++E L L + L H++D Sbjct: 121 HERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++D ++ LR+K+ + G + +ETV G GY LR +A+ + Sbjct: 181 FAYDGTSNVVDQYVAYLRRKI-DKPFGTSQLETVRGAGYRLRTSARTD 227 >gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 223 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L + I+ L E+++V GE+ ++ + +D ++LD+ L GF Sbjct: 1 MRILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIMLPGKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R TP+ +L+ IED+V+GL GADDY+ KPF EEL+ARIR ++RR Sbjct: 61 AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL+++ D + V G I L+ KE+ ++E L +N +T++ + ++ Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IDV+I LRKK+ +A K I TV G GYV+RE Sbjct: 181 YDYEGGSNVIDVYIRYLRKKI-DAGYEKKLIHTVRGTGYVMREE 223 >gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110] gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 243 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + + L E F V V + G+ + D I+LDL + G Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+AR+ A++RR Sbjct: 70 VCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRPP 129 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + +L ++T++ G + LT E+ M++ L L++E Sbjct: 130 LEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV I +LRK + A YI+TVWG GYV + Sbjct: 190 LAQLARGREFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVFVPDG 241 >gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + IE+ LKSE ++V GE+ + L Y +D +ILD+ + + G Sbjct: 4 KILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLDGI- 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + K + P+ LS DK++GL GADDYISKPF EL+AR++A +RR + Sbjct: 63 LTCIKIREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYKK 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I + + N+D V V+G I LT KE+ ++E L+ K + E Sbjct: 123 FNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I +R+K+ YI+TVWG GY + Sbjct: 183 TVWKEKFVVSDTSVVVHITNIRQKIEIDPKAPQYIKTVWGVGYKI 227 >gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes] Length = 233 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 71 ATKLR-EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 130 TVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246 >gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A + + L+ E + V G G + +DA++LDL L I G E Sbjct: 6 RVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R RV TP+ I+S S+ ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 ICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G+L + A+ V V G I LT +E+ ++ + ++ L Sbjct: 126 LARNARMESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETC 230 N ++ + + ++ I +LR K+ I TVWGRGY L + K++ Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRAKVEVDPAQPRRILTVWGRGYKLSIGADGKEDAA 242 >gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] Length = 234 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIR-KTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV I +LR+K+ +A YI T G GY Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGY 228 >gi|188580015|ref|YP_001923460.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343513|gb|ACB78925.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 233 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 173/228 (75%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGKNYIETVWGRGYVLREPVEGE 228 >gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158] gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158] Length = 286 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V T G G+ L + +DA+ILDL L + G E Sbjct: 53 RILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGLE 112 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 113 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 172 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 173 LARDSRIDAGTLDVAGLSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDLL 232 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 233 NAVWGYQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKLAAPDQRDA 286 >gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 242 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + E D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIIEPGEE 242 >gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 220 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGA-----ELIRNVRGLGYMIAKDA 220 >gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032] Length = 226 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L +E F+ G +E + D I+LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + D V GL+SGADDY++KPF +ELVARIRA +R + Sbjct: 64 ICRLIRQESSV-PIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I GDLS+++ A TV+ G I LT E+ ++ L+ + T+E L ++ Sbjct: 123 EPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 243 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + + L E F V V + G+ + D I+LDL + G Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+AR+ A++RR Sbjct: 70 VCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRPP 129 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + +L ++T++ G + LT E+ M++ L L++E Sbjct: 130 LEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV I +LRK + + A YI+TVWG GYV + Sbjct: 190 LAQLARGREFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVFVPDG 241 >gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 252 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 20 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +++R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 80 VAKSIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 139 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 199 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251 >gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 127/232 (54%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE+ + + D I+LDL L + G+E Sbjct: 6 KILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVRHKSNV-PIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ DL+VNL +V +G+ + + KE +++ L+ N T+ Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 E L++++ + + +DV I +LR+K+ G ++ + TVWG GY Sbjct: 185 EQLLDNIWGYEYVGDTRTVDVHIKRLREKI---PGNTHWSLSTVWGIGYKFE 233 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I L+EDD +A ++L LK E + + G +E + + +DA+ILDL L + G E Sbjct: 9 KIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 69 ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 128 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q+L + + ++ A+ V G I LT +E+ ++ + +++ L Sbjct: 129 MSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQALL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + E ++ I +LR K+ A I TVWGRGY L Sbjct: 189 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234 >gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 244 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 22/239 (9%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ +A I L L E + + G + ++L + Y D ++LD+ L + G++V Sbjct: 6 ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R +TP+ +LS + DKV GL+ GADDYI KPF+ ELVAR+ A++RRS Sbjct: 66 CTEIR-KTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124 Query: 122 ------------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 H + + L VN+ TV +GH + + KE +++ L+ Sbjct: 125 ESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLAS 184 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R N T+E L+ L+ + + +DV I +LR+KL+N I TVWG GY Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGYKFE 241 >gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 239 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + +++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRLDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 239 >gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 242 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIIEPGEE 242 >gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] Length = 235 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDI 121 Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 236 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G + I + + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQH 235 >gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 223 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K LA+ ++ L+ +F V + GE+G+ + + +D ++LD+ L + GF Sbjct: 1 MRILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPLMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + + P +L+ +IEDKVRGL GADDY+ KPF+ EL ARIRA++RR + Sbjct: 61 EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H Q+ + DLS++L + G I LT KE+ ++E N LT+ H++D Sbjct: 121 VHYQTKLTVADLSLDLATHRLYRNGETIDLTNKEFALLEFFLRNLNIVLTRTQITEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DVF+ +LR K+ I T+ G GY+++E Sbjct: 181 YNFDSFTNVVDVFVNRLRNKIDKN-RETKLIHTIKGVGYIMKE 222 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + K +DV + ++R K+ Y+ TV G GY + Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKI 229 >gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp. subtilis str. SMY] Length = 293 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ I+ +L+ E + + E+ I + K + D I+LD+ + + GFE Sbjct: 62 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 121 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 122 ACTLIR-EYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 180 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + V G + + + Q+++ N L+K+ Sbjct: 181 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 240 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I KLR+K+ YI TV G GY N + Sbjct: 241 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 289 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 187 bits (475), Expect = 9e-46, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ F V G I E D IILD+ L D+ GF Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + LR A + P+ L+ EDK+ GL G DDY++KPF+ +E+VARI+AI R Sbjct: 66 VTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMH 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G+L+++ D V V I L+ E++++ L L N L+K L+H+++ Sbjct: 126 ADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+KL + I+T G GY+L+ Sbjct: 186 YDFNGDAGIVESYISYLRRKLDQHSSEP-VIQTKRGFGYMLK 226 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F + G++ +L ++ I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ATQLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY N DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240 >gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 222 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ + E + + G++ +E + FD I+LD+ + GF+ Sbjct: 3 KILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R + + PV +++ DK+ G GADDYI+KPF+ +EL+ARI+A+++RS Sbjct: 63 TLSEIRGSCNT-PVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 IV GDL VN+ + TV ++G+ + LT KE+ ++ L+ + L++E L ++ Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D I LR++L + + I+TVWG GY Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGYKF 218 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 5/234 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+EDD +A + L L+ E + + G + ++ + +DA+ILDL L ++ G Sbjct: 7 MKQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDG 66 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R +R P+ I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR Sbjct: 67 LEICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 126 Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ I L+++ A+TV + G + LT +E++++ + ++ L Sbjct: 127 QAMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + E ++ I +LR K+ A + TVWG+GY E D + Sbjct: 187 EQVWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQNHDAS 240 >gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 237 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G++G +L ++ D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL + + V V + LT KE++++ L++ ++ Sbjct: 123 VQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR+KL +I TVWG GY N +ET Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|332187122|ref|ZP_08388862.1| response regulator [Sphingomonas sp. S17] gi|332012822|gb|EGI54887.1| response regulator [Sphingomonas sp. S17] Length = 235 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 158/235 (67%), Positives = 194/235 (82%), Gaps = 2/235 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLGSEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVA++STPV ILSG++ ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKRLRVARVSTPVLILSGINEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV+ R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVENARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 G DEPE+KIIDVFICKLRKKLS A G+NYIETVWGRGYVLRE DE + + Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACDGENYIETVWGRGYVLREP--DEVGQPEQA 233 >gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 240 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 121/235 (51%), Gaps = 6/235 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRIDAGTLDIAGLSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 N ++ R E ++ I +LR K+ I TVWGRGY L + + Sbjct: 186 NAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPDQRDAS 240 >gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8] gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans A8] Length = 242 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + L L+ E + V G +G+ + +DA++LDL L I G E Sbjct: 6 RVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 66 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + +S++ A+T EV G R+ LT +E+ ++ + + ++ L Sbjct: 126 LERNARIDAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ + E ++ I +LR K+ I TVWG+GY Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGYKF 231 >gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family [Chlorobium chlorochromatii CaD3] Length = 225 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V + G+ G+ + ++D +I+D + + G Sbjct: 1 MRLLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPALSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A P+ L+ ++ED + GL++GA+DYI KPF EEL+ARIR +R R Sbjct: 61 EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQLRS-R 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G +++N V G + LT KE+ ++E L K+ T+ + H++D Sbjct: 120 TQGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDV+I LR+KL N+I+T+ G GY++RE Sbjct: 180 IHFDADTSVIDVYITFLRRKLEAVGCN-NFIQTIRGIGYIIRE 221 >gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V ++G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKEA 220 >gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 225 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLR-ETHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V I +LR K+ + A I TV G GYVL KD+ Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP--KDDA 225 >gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 230 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A I+L L+ E + + G +G+ + +++D ++LD+ L ++ G E Sbjct: 5 RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R TPV +L+ ++ DKV GL GA+DYI+KPF EEL ARIR +R Sbjct: 65 VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + T G+L VN + V + I LT KEY ++ + KN L+ E L Sbjct: 125 TSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + I+ V+I LRKK+ + YI+TV G GY+L+E Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKIDASFSTP-YIQTVRGVGYMLKE 230 >gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 226 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+K + I+ L+ ++ V G++ ++ + E+D I+LD+ L + GFEV Sbjct: 6 LVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMTGFEVC 65 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SRG 121 + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR Sbjct: 66 QQIR-EFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASKNA 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +I GDL +N + + V V I++T +EY+++ELL+ ++E L ++ Sbjct: 125 DSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIWGT 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +V+ +DV I +LR+KL + Y+ T WG GY + Sbjct: 185 EYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYFQ 225 >gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 236 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ LKSE + GE+ + + + D +ILD+ + + G + Sbjct: 7 ILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPKLNGIDT 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 67 CLKIREEREM-PIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125 Query: 123 AQSLIVTGDL----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++NL+ V + + + LT E+ ++ LL+ + + E Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ + +I+TVWG GY + + Sbjct: 186 NIYESVWNQEFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236 >gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 245 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++ I+ L ++ + V G + +E + +D I LD+ + + GF+ Sbjct: 20 RILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGFD 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ I++ +D V+G + GAD+YI+KPF E VAR+ AI+RR Sbjct: 80 ACERIRAKSDV-PIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDM 138 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G+L ++ A V V+G + LT E++++ L+ T+E+ Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E ++DV + +LR+K+ I TV G GY L Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|85713634|ref|ZP_01044624.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85699538|gb|EAQ37405.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 233 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 169/228 (74%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHDDE 228 >gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 238 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +++ L+ E + V + GE + + ++ I+LD+ + + G EV Sbjct: 7 VLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPEKDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR K +TP+ +L+ ++V+G + GADDYI KPF+ E+V R++AI+RRS Sbjct: 67 CAELR-EKKTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSAVF 125 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 126 SPVSNSSSSKDLVVFPHLTIDHDAHRVTADGTEVNLTPKEYELLYFLAKSPDKVFDREQL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFE 234 >gi|260576790|ref|ZP_05844775.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259021042|gb|EEW24353.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 237 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 155/228 (67%), Positives = 188/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ IL+G E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVETPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTV+V G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIRTGKVAVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ A + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGQSYIETVWGRGYVLRDPAPAD 228 >gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LA ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ TV+ I LT +EY ++E L K+ +TK L +++D Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220 >gi|326386598|ref|ZP_08208220.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208913|gb|EGD59708.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 157/224 (70%), Positives = 191/224 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLSAEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG+S ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRDP 224 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ + ++ L+ E + V GE+ + + + + + I+LD+ + I G Sbjct: 4 IKILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDGV 63 Query: 61 EVLRALRVAKISTPV--CILSGMSSIEDKVRGLQSGADDYISKPFNKE----ELVARIRA 114 EV R LR L+ ++ L G DDYI+KP + A +R Sbjct: 64 EVCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRR 123 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + +I G LS++ D +V+ I L KE++++ LL + ++E Sbjct: 124 SDRLPQEEGLDVIKIGGLSIDRDRVSVQKGEEVIELAKKEFELLFLLVSKPGKVFSREEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ + IDV I KLR+K+ + YI+T+ G GY Sbjct: 184 FNKVWGTDVIVGNRTIDVHIRKLREKIGDD-----YIKTIKGIGYKFE 226 >gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 222 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LA ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ TV+ I LT +EY ++E L K+ +TK L +++D Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220 >gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ ENF + D GE +E+ ++D I+LDL L + G E Sbjct: 6 RILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R +TP+ +L+ ++V G ++G DDY+ KPF+ E++ R++AI+RR Sbjct: 66 VCQRVR-EFKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ S++V +L+++ DA V G + LT KEY+++ L+L + T+E Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D I +LR+KL+ N I TVWG GY L Sbjct: 185 ELLKDVWHYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKLE 235 >gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT] gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT] Length = 231 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++++ I+L+L+ +NF V GEDG++ +ILD+ L I GF+ Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPIVVILDIMLPGIDGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR S + +L+ + DK++GL++GADDY+ KPFN EL ARI +++RR Sbjct: 66 VCEILRKNYPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T G+ VNL++K ++LT KE+ ++++ T+L+++ L+ Sbjct: 126 SNNTSSDTLVSGEFKVNLNSKIAYKNDKELNLTPKEFILLKIFMENIGTSLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR KL + Y++TVWG GY+ +E+ Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231 >gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 226 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 12/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ + I+ L++ + V + GE+G + D IILDL L I G Sbjct: 3 KILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL-NDSIDLIILDLMLPRIDGLS 61 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R P+ +L+ DK+ GL+ GADDYI+KPF+ ELVARI+A++RR Sbjct: 62 FCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLRRV 121 Query: 120 RGHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + D +++ + G ++LT KE+ ++ L + LT+++ L Sbjct: 122 QKNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDILL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I +LR+K+ + YI TV G GY + Sbjct: 182 EKVWGYEYAGDTRTVDVHIRRLRRKIGDN-----YIVTVRGVGYKFVK 224 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+ ED+ +A +E+ L+ E + V G +EL + +D IILD+ L Sbjct: 1 MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E+LR +R TP+ +L+ SS+EDKV GL GA+DYI+KPF EEL+ARIRA +R Sbjct: 61 GIEILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRI 120 Query: 119 SRGHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V L V N + V I LT +E+ ++ L K L +E Sbjct: 121 KSAGTEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + ++DV+I LRKK+ + I T+ G GYVL+E Sbjct: 181 ILEAVWGYDFLGDTNVVDVYIRYLRKKI-DMPERPALIHTIRGVGYVLKE 229 >gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V G+ + LT EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL I+TV G GY+L A D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGVD-----IIQTVRGLGYLLSPPAAD 222 >gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 241 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240 >gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 111/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 4 ILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDGWTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R++A+++R R Sbjct: 64 CKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+E ++ ++ Sbjct: 124 STQTIQFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ + IETV G GY L Sbjct: 184 YAGDDRTVDVHIKRLRERFATTPD--FRIETVRGLGYRLE 221 >gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 225 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 133/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L E+DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ S + GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL + I T+ G GY L + A+ Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLG-----PDVITTIRGLGYSLDDPAE 221 >gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 290 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A ++ L++ F+V G + + + D ++LDL L I G E Sbjct: 54 RVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLPGIDGIE 113 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ D+V GL++GADDY++KPF+ EL R+R+++RR+ Sbjct: 114 VCRRLR-EQRPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRAAE 172 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G L V+ A+TV G + LT +E+ ++ L T+ L ++ Sbjct: 173 PPRASGALHAGMLVVDAAARTVTRHGVALSLTVREFDLLAFLLRHPGRAFTRSELLEQVW 232 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + V I +LR+K+ + + TVWG GY Sbjct: 233 GWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 272 >gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + + D ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ K++G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 LCYELR-KYYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N + V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRNTFEVNAGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222 >gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] Length = 234 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ ++ + GE + + + I+LDL L + G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-QKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + DL++NL +V G ++ + KE +++ L+ N T+E Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHIKRLREKIKDHPSWA--LSTVWGIGYKFE 230 >gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J] gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J] Length = 236 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G++ + + + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IESAVAEENASAGSQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13] Length = 228 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIRKDSNV-PVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V +++ ++ V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +DV I +LR+KL G +ETVWG GY Sbjct: 186 GYDYPGYSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226 >gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 237 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G++G +L ++ D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL + + V V + LT KE++++ L++ ++ Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR+KL +I TVWG GY N +ET Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1] gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 243 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F + + + G+ + D I+LDL + G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 EP + +DV + +LRK + A YI+TVWG GYV + + Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVFVPDGAN 243 >gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] Length = 244 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++++DD + + L E F V + + + + D I+LDL L G Sbjct: 11 RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLMLPGEDGLS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 71 ICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRRPA 130 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G +L + + G +I LT E+ M++ L L+++ Sbjct: 131 PEAPGAPSKEPQVVNFGPFEFDLSLRRLSKNGEQIALTTGEFSMLKALVRHPRQPLSRDK 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV I +LRK L YI+TVWG GYV + Sbjct: 191 LAQLARGREFEPFDRSLDVQISRLRKMLEPDPAQPRYIQTVWGVGYVFVPDG 242 >gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD + + I + L++E G+E K + D IILD+ + + G + Sbjct: 4 KILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RRS Sbjct: 64 ACLKIREEKSM-PIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ G+L +N D + V VQ I LT KE+ ++ELL+ K L+ + Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I +R+K+ YI+TVWG GY + Sbjct: 183 EAVWKEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGYKI 228 >gi|167644991|ref|YP_001682654.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167347421|gb|ABZ70156.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 231 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 158/230 (68%), Positives = 194/230 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LRVAK++TP+ ILSG + I+ KV+ GADDY++KPF+K+E++ARI A+VRRS+ Sbjct: 61 DVLRTLRVAKVNTPIMILSGSAEIDTKVKTFSGGADDYMTKPFHKDEMIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAQGKHHIETVWGRGYVLRDPNEQVAA 230 >gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 237 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G++G +L ++ D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSQ 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL + + V V + LT KE++++ L++ ++ Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR+KL +I TVWG GY N +ET Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 628 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 125/224 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ ML S+ + V + + G+ G E + +D ++LD+ L + G Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ +L+ ++ +DKV+GL +GADDY+ KP + EL ARIRA++RRS Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ + ++ V G + LT KEY ++ELL + T + + L+ L+ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + I LR+KL A G +IETV+G GY L +N Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + +I+ +L+ D + + D ++LD+ + + G E Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + +R PV ++ + + + + Q+GADDY++KPF Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPF 600 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L ++V GE+ +E+ + + D ++LD+ + + G+ Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDGYG 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 68 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I GDL ++ + + V + RI LTG E+ ++ELL R ++ L Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 235 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 235 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +D+ +A ++L L+ E + V V G + EL + D ILD+ + + GF Sbjct: 3 MTILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPLMDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + PV ++S +S DK+ GL GADD+I+KPFN E+VAR++A +RR+ Sbjct: 63 ALLKHIRT-IHTFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRRAN 121 Query: 121 GHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + G L ++ + T+ I LT EY++++ L TK Sbjct: 122 EFNKPSVPEQPADTTTLGRLVLDHSSCTLLRGDEPIPLTALEYRLLKTFMLSPGKIFTKR 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I V I +LR+K+ YI+TV G GY +E Sbjct: 182 HLFELVWSDLYLGDDNAIMVQISRLREKIEEQPKQPRYIQTVRGLGYKFQE 232 >gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] Length = 226 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA+ I+ L E + V + G+ IE+ ++ +ILDL L + G+E Sbjct: 3 RILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ P+ ILS DKV+GL GADDYI+KPF EL+AR+ A +RRS+ Sbjct: 63 ICQNIRIKSTI-PILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRRSQV 121 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I ++ + VE G + L+ E++++ LS ++E + Sbjct: 122 FNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSREQLYERI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + V I +LR+K+ + YI TVWG GY Sbjct: 182 WGFDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225 >gi|229080389|ref|ZP_04212913.1| Response regulator [Bacillus cereus Rock4-2] gi|228702951|gb|EEL55413.1| Response regulator [Bacillus cereus Rock4-2] Length = 240 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K + + +E +LK E F +Y GE+GI +CK + D IILD+ L D+ G+ Sbjct: 12 KILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGEEGIRMCKQVQPDLIILDIMLPDLDGY 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R P+ LS + DK+ GL G DDYI+KPF+ +E+ +++A RR++ Sbjct: 72 SVCQQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GD++++ TV + LT KE+ ++ L N +K + Sbjct: 131 YQEKARIMYQFGDITIDDAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKTRLYEAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+ V I LR+K+ + +Y+ TV G GY L Sbjct: 191 WGETYLGNDNIMMVHIRHLREKIEDNPSKPHYLVTVRGLGYKL 233 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ATKLR-EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 240 >gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 225 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 AVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V I +LR K+ + A I TV G GYVL KD+ Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP--KDDA 225 >gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 229 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + + D ++LD+ L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 64 CKQLRAKSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + V G + ++++ V V G + L KE+ ++E L LT+ ++ Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ G ++ TV G GY L E Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 229 >gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L] gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L] Length = 254 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251 >gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DDK + + L L+ + + V + GE+ + + D I+LD+ L I G++ Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ DKV GL+ GADDYI KPF+ +E++ARI+A+ RR Sbjct: 65 VCREIRKKSNV-PIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQ 123 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LSVN+ + V G + KE +++ L+ N T++ L+ Sbjct: 124 SSAESEIKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + IDV + +LR+KL K ++TVWG GY Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGV-SDKWALKTVWGVGYKFE 227 >gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84] gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84] Length = 234 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIR-KTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 PETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV I +LR+K+ + YI T G GY Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGY 228 >gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + L L+ E + V ++ GE+ + + D ++LD+ L + G++ Sbjct: 5 KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLPGLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K + PV +L+ DKV GL+ GADDY+ KPF+ +E++ARI+AI RR Sbjct: 65 VCREIR-KKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQ 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ +V L VN+ ++V G + KE +++ L+ N T++ L+ Sbjct: 124 SNQQAEVKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + IDV + +LR+KL K ++TVWG GY N Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGV-SDKWALKTVWGVGYKFEVNE 230 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 71 ATKLR-EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 130 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246 >gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 228 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 67 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225 >gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIP 58 M+IL+IED+K L +++ L+ E + V + GE+ + + F +D +ILD+ L I Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + + LR P+ +L+ +EDK+ GL+SGADDY+ KPF+ EEL+ARIRA++RR Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ D+S++ +K V I LT KE+ ++E L N ++KE ++H+ Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ I LRKKL +N IET+ G GY ++E Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERK-RDENIIETIRGMGYRIKE 224 >gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905] gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905] Length = 230 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 132/226 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L+ + LK + V GE+ +EL + E+D IILDL L + G Sbjct: 1 MKLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +RV + ILS S+I DK+ GL GA+DY+ KPF+ +EL ARIR ++RR+ Sbjct: 61 EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ ++++ K V V G I +T KEY ++E L L++N ++ E + H++D Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I LRKK+++ G K I+TV G+GY++ E+ K Sbjct: 181 SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMITESDK 226 >gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] Length = 244 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E ++V G + +E+ D ++LD L +I G E Sbjct: 10 KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + STPV I++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 70 VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 128 Query: 122 HAQSLIVTGDLSV----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +GD S DA TV G + LT +E+ ++ L+ R LT+ Sbjct: 129 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 188 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E L ++ +V+ +DV + +LR+K+ ++ + T G GY ++ ++ Sbjct: 189 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 242 >gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 231 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+K +A ++ L+ + V G++GIE K D I+LD+ + DI G+E Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDGYE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ LS S D+++G G DDY+ KPF+ +EL+ARI A +RR + Sbjct: 62 VCRKIR-DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++++L ++ V V+G+ I LT KE+ ++ELLSL +KE Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + + I +R K+ N YI+TVWG GY + Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229 >gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 238 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + L+ EN+ + + G+ +++ ++ I+LD+ + G E Sbjct: 6 KILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + L K TPV +L+ ++V G + GADDYI KPF+ E+V R++A++RRS Sbjct: 66 VCQEL-HEKKMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRSLQ 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++V ++++ DA V G ++LT KEY+++ L+ + +E Sbjct: 125 TGFLNADTKAKDIVVFPHITIDNDAHRVTADGKEVNLTPKEYELLYFLAKSPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSENAAKMIVTVWGVGYKFE 234 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + +FD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 69 VCMKIREERNM-PIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + GDL+VN D + V V+G + LT KE+ +++LL+ K L+ Sbjct: 128 YNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 188 EAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 235 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 4 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+ARIRA++RR++ Sbjct: 64 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ G Y+ TV G GY + ++ Sbjct: 183 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKIDTPSE 235 >gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD+ + + I + L++E F G+ L + E D IILD+ + + G + Sbjct: 4 RILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS S DK+ GL +GADDY++KPFN EL+AR+++ +RR + Sbjct: 64 AAFKIREEKNM-PIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL +N + V V+G I LT KE+ ++ELL K T ++ Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R+K+ + YI+T+WG GY + Sbjct: 183 VWQEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226 >gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676] gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676] Length = 243 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G RI+LT EY ++ L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243 >gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 237 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + ++ L+ EN+ V G+ +E + + FD +ILDL L + G Sbjct: 7 KILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRAIR-DTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRTYS 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G L++++ + + + LT E++++ L+ T+ + + Sbjct: 126 EPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDET 229 E + ID + LR KL + ++ TV G GY NA E Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLFTVHGVGYRFEAGNASHEA 237 >gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA ++ L +E F V V G DG+E +FD ++LD+ L + G+ Sbjct: 1 MRILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR ++ TPV +LS D+ GADDY++KPF+ LVAR+RA++RR Sbjct: 61 QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G+L+++ + V + LT +EY ++E L K ++K L ++D Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V+I LR+K+ +A G IETV G GY L Sbjct: 181 SNYDGDDNVVEVYIGYLRRKI-DAPFGMATIETVRGVGYRL 220 >gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA I+L L SE + V V G G+ L + + D ILD L + G E Sbjct: 4 HILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLTGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 64 LCRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ DLS+N + V I LT KE+ ++E L T++ L ++ Sbjct: 124 VDEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL G K I TV G GY LRE Sbjct: 184 DFMGDSNIIEVYVRYLRLKLEE-QGEKRLIHTVRGVGYALRE 224 >gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72] gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72] Length = 228 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD A I L+ V V G DG+ L FDAI+LD L + G Sbjct: 1 MKILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRMLPRVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR ++I+TPV +LS + ++D+V GL++G+DDY+ KPF EL+AR+ A+ RR Sbjct: 61 TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G Q+ + T DL ++L ++V RI L KE++++E L +T+ M L Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +P+ +IDV I LR K+ + G I TV G GY L +A Sbjct: 181 VWDYHFDPQTNVIDVHISNLRAKI-DLPGLPPLIHTVRGAGYRLGGDA 227 >gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei] gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei] gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD + +EL L +V + GEDG+ + + ++LDL L I GFEV Sbjct: 4 ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A PV +L+ D V GL +GADDY+ KP L ARIRA++RR+ Sbjct: 64 CRGIRAAGPV-PVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAASS 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V DL ++ + TV +G + LT E +++ LS L+++ L +++ Sbjct: 123 PDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++D + +LR K+ Y++TV G GY Sbjct: 183 YLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGYRFGP 223 >gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 245 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++ I+ L ++ + V G + +E + +D I LD+ + + GF+ Sbjct: 20 RILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGFD 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ I++ +D V+ + GAD+YI+KPF E VAR+ AI+RR Sbjct: 80 ACERIRAKSDV-PIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDM 138 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G+L ++ A V V+G + LT E++++ L+ T+E+ Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E ++DV + +LR+K+ I TV G GY L Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD + I+ L E ++V G + ++ I+LD+ L G Sbjct: 1 MKVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R PV +++ S +EDKV GL +GADDYI+KPF+ +E++ARI A++RR + Sbjct: 61 KVLSRIR-EVKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N + V +G I LT +E++++++L+ L++E ++ Sbjct: 120 KEEEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV+I LR KL + I TV G GY+L+ Sbjct: 180 SSYGENSNVVDVYIKNLRNKLEDRP--PKLIHTVRGMGYMLKPQ 221 >gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ ++V + G++ + + + D +LD+ + + G Sbjct: 1 MKILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR+R Sbjct: 61 GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120 Query: 121 GHAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A G DL +++ ++ V I LT E+ ++ LL LT++ Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K G I TV G GYV+RE+A Sbjct: 181 ILEEVWGHEFPSSGNALEVYIGYLRRKTEAD-GEPRLIHTVRGVGYVMRESAP 232 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I L+EDD +A ++L LK E + + G +E + + +DA+ILDL L + G E Sbjct: 6 KIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 66 ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q+L + + ++ A+ V + G + LT +E+ ++ + +++ L Sbjct: 126 MSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQALL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDET 229 + ++ + E ++ I +LR K+ A I TVWGRGY L NA+ + Sbjct: 186 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKLAAVNAEHQP 240 >gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51] gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 8/227 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ + I L+ E + G + +EL K D I+LD+ + + Sbjct: 2 MKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKLD 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V R +R + +L+ S+ DK+ G + GADDYI+KPF+ + LVA+I A+++R Sbjct: 62 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 121 Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L++N + TV + G I LT KE++++ L K LT+EM + Sbjct: 122 ADAGAQETPEIYEIGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMM 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ +++ +D I +LR+KL I TV G GY L Sbjct: 182 NLVWGYEYYGDLRNVDSHIKRLRQKLK---SEGRLITTVRGSGYKLE 225 >gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG EV Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 62 RQLRGRSNV-PVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120 Query: 124 QSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 121 EAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + K +DV + ++R K+ Y+ TV G GY + Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGYKI 229 >gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104] gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104] Length = 222 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MRVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ TV+ I LT +EY ++E L K+ +TK L +++D Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220 >gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + +++ A+ V G R+ LT +E+ ++ + ++ L Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 239 >gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT] gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +D++ + + L L+ + +Y G + +++ E D I+D+ + I G+ Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R +R PV +LS S DK+ GL GADDYI+KPFN E++AR++A +RR Sbjct: 63 LVRKIR-ENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNK 121 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N++ T+ + ++LT EY+++ L K TK+ Sbjct: 122 SMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + I V I LR K+ + + +YI+T+ G GY L N Sbjct: 182 FEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 222 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I L E +NV G+ ++ + +D I+D+ + + G Sbjct: 1 MRVLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMIPNKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R A I PV L+ + +D VRGL +GA DY++KPF EL+AR+R ++R Sbjct: 61 TVLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I G L V+++ + G I LT +EY ++E L+ +N +T+E ++++ Sbjct: 121 PVNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D+ +IDV+I LR+K+ + + I T+ G GY L Sbjct: 181 IDDDVNSNVIDVYIRYLRRKIDDN-YEEKLIHTIRGVGYKLE 221 >gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 227 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DDK + + L L+ E F V G+ ++ + +ILD+ L I G Sbjct: 6 KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIMLPGIDGIA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ DKV L+ GADDYI KPF+ +EL+AR++A++RR Sbjct: 66 LCREVR-KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V+L V +G + LT KE +++ L N T++ L +++ Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGKNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+K+ + K + TVWG GY N Sbjct: 185 GYDYMGDSRTVDVHIKRLREKIGDGINWK--LTTVWGVGYKFEVN 227 >gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D+K + I +L E + V DG+ + D +ILD+ L D G+ Sbjct: 7 KVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIMLPDGEGY 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS DK+ GL G DDYI+KPF+ +E+ R++A +RRS Sbjct: 67 DICKQIR-DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSS 125 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S I G +N + G I LT KE ++ N ++KE Sbjct: 126 YLQPSQAEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I +LR+K+ N+ ++ TV G GY Sbjct: 186 TVWGEDFFGSDNTVMVHIRRLREKIENSPSTPEFLVTVKGLGYKFV 231 >gi|188589410|ref|YP_001921180.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188499691|gb|ACD52827.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 237 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E +LK E FN VY ++G+ + + +ILD+ L D G+ Sbjct: 4 KILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ + +R P+ LS + DK+ G G DDYI+KPF+ +E+ R++A +RR Sbjct: 64 EICKDIRSKSNV-PILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +I G +N + G I LT KE +++ LL+ +N ++K Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKTIELTAKELKILSLLAHNQNQIISK 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ I V I KLR+K+ + YI TV G GY L Sbjct: 183 EKLWDKVWGEDYFGFDNTIMVHIRKLREKIEEDSSNPKYILTVRGLGYKL 232 >gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 225 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ L ++L L E + V GE+G+E K +D +ILDL L I G + Sbjct: 4 ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDGLTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA+ RR+ Sbjct: 64 CKEVR-SFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTTP 122 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GD+++N+ K V+ G I LT KE++++ LL+ +K+ ++ ++ Sbjct: 123 YVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++V I KLR+K+ + +I T WG GY ++ Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225 >gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM B1551] gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM B1551] Length = 238 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D+ + +++ L+ E + + G + IE ++D I+LDL + I G E Sbjct: 6 RLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCKQIR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LLREVWHYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFE 234 >gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] Length = 240 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 134/239 (56%), Gaps = 10/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++L L+ E+F++ G++ +++ ++ I+LDL L ++ G E Sbjct: 3 KILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++R Sbjct: 63 VANRLR-EYKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ HA+ LI L ++ DA V G +++LT KEY+++ L+ N +E Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETCE 231 L ++ +++ +D + +LR+KL+ + + I+TVWG GY N DET + Sbjct: 182 LLKDVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVNNNDETTQ 240 >gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 235 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ A + L + V + G D + +DAI+LDL L + GF Sbjct: 1 MRVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A+ +P+ +L+ ++D++ GL +GADDY++KPF+ EL AR+RA++RR Sbjct: 61 EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GD+ ++ A++V+ G + L+ KE+ ++ELL R LT+ L+H++D Sbjct: 121 VERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ LR+K+ A G IETV G GY LR Sbjct: 181 LGYDGTSNVVDQYVRYLRRKIDPADGLSR-IETVRGAGYRLR 221 >gi|158422824|ref|YP_001524116.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329713|dbj|BAF87198.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 233 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 169/224 (75%), Positives = 198/224 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K YE+D I+LDL L D+ GF Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LR+AK+ TP+ ILSG+++ EDKV+G GADDY++KPF+K+E+VARI AIVRRS+ Sbjct: 61 EVLRSLRLAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVEGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREP 224 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+A ++ L+ + V V G + K +F+AI+LDL L ++ G Sbjct: 3 KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR K+STP+ +++ D+V GL+ GADDYI+KPF+ E+VAR++A++RRS+ Sbjct: 63 VLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 122 Query: 122 HAQSLIVTGDLS------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +N KTV + + LT +EY ++ + R + +E L Sbjct: 123 STDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +++D+ I LR K+ + ++TV G GY Sbjct: 183 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGY 226 >gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE ++ ++ D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + Sbjct: 66 VCREIRH-TSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++NL +V G +I + KE +++ L+ N T+E L Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGYKFE 229 >gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL LK+EN+NV+ ++ + + D ILD+ + I GF Sbjct: 1 MNILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIMMPHIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R + PV +L+ DK+ G GADDYI+KPF EL+AR++A +RR Sbjct: 61 TVLQKIR-ETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFT 119 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + +N + + V + ++ LT E+ ++ L + ++ E Sbjct: 120 LYNQSSKPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I LR+K+ ++ +I+TVWG GY + + Sbjct: 180 FQEIWGEKYFNSNNTVMVHIRHLREKMKDSVENPKFIKTVWGVGYTIEK 228 >gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 231 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + +L+ E F V + G++ + E D ++LDL L + G EV Sbjct: 4 VLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R+ PV +++ + DKV GL+ GADDY++KP++ EL+ARIRA++RR R Sbjct: 64 CKNIRLKSSV-PVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRRGRHD 122 Query: 123 AQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G + ++++ V V G + + KE+ ++E L + LT+ Sbjct: 123 DSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMPLKEFDLLEYLLRNRGRVLTRGQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ + K +DV I +LR K+ ++ TV G GY + Sbjct: 183 IDRVWGSDYVGDTKTLDVHIKRLRSKIERNPSSPEFLVTVRGLGYKFED 231 >gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G D + + D ++LD+ L D GF Sbjct: 10 RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV L+ ++ED++ GL +G DDY++KPF+ +E+V R+RAI+RR R Sbjct: 70 VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 129 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +L +A V G + L+ E++++ L + +++ L+ Sbjct: 130 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + ++++ +I LR+K+ + I T+ G GYVLR ++ Sbjct: 190 VWNYEFGGDSRVVESYISYLRRKI--DSTAPPLIHTIRGVGYVLRLPPDEQ 238 >gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 220 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ ED+ + + +L+S ++V G + ++L + FD +ILD+ + + GFE Sbjct: 3 HILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ L+ + +++V+G G DDYI+KPF+ L+ RI A++RR R Sbjct: 63 VAQQVR-KTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + ++++ + V + G+ + LT KE+Q++ LL L +E + L+ Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWGF 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I LRKK+ YI+TV G GY L Sbjct: 182 DAFGDTRFLDTHIKNLRKKI-----NVPYIQTVKGVGYKLE 217 >gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 231 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ ED+K ++ I+ L+ E + + GED ++ E + IILD+ L + GFE Sbjct: 4 RVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K S P+ +++ DK+ GL+ GADDYI+KPF+ ELVAR++A VRR Sbjct: 64 ICKRVR-EKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEM 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ S++L V+ I LT +E+++++ L+ +K+ ++E L Sbjct: 123 NINADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV + +LR+K+ + + YI T G GY + Sbjct: 183 ERVWGYEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYFK 229 >gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] Length = 243 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60 ++L+++DD A+ + +++ F G++ + L + +FD I+LD+ + GF Sbjct: 15 KVLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNGVDDGF 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R+LR P+ ILSG + D + GL GADDYI+KPFN L A+I+A++RR++ Sbjct: 75 DAIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNK 134 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +A + I G + I L+ KE M++L TKE Sbjct: 135 KAAYNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYEL 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + I V+I LR K+ + YI+TVWG GY N + Sbjct: 195 VWG-NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTVNEGE 243 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I++++D++A+ S+ L +++ + + GE +++ + + D +ILD+ + + G Sbjct: 1 MKIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR Sbjct: 61 EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +Q+ I DL +N D + V I LT E+ +++LL L++ L Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDVVRGNRTISLTRTEFALLQLLMTNPRRVLSRSTIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++V+I LR+K G I TV G GYVLR+ A Sbjct: 181 EEVWGYDFPTSGNALEVYIGYLRRKTEQE-GEPRLIHTVRGVGYVLRDTAP 230 >gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I + L++E +V G + I+L E D +ILD+ + + G + Sbjct: 4 ILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVMMPRMDGIKA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + S P+ +LS DK+ GL GADDY++KPFN EL+AR++A +RR + Sbjct: 64 CMHIR-EQYSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQKML 122 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 I +L +++ V ++G + LT E+ +++LL+ + + Sbjct: 123 TSKEGVHDQITIDELVIDVAKHFVSIRGQVVMLTPLEFAILKLLAANPGQVFSADTIYES 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I LR+KL YI+TVWG GY + + Sbjct: 183 VWKERIGFSDNTVMVHIRNLREKLEINPRKPEYIKTVWGVGYKMDK 228 >gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 238 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I++ L+ E+F + G+ +E ++D IILD+ + + G E Sbjct: 6 KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR TPV +L+ ++V+G + GADDYI KPF+ E V R++A++RR Sbjct: 66 VCKELRKE-KDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRRVST 124 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++V L+++ DA V + LT KEY+++ L+ + +E Sbjct: 125 KTYQEVDTSSKNMLVFPHLTIDHDAHRVAADNQEVSLTPKEYELLCFLANAPDKVFNREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNTVSKEAAKMIVTVWGVGYKFEVEE 237 >gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 242 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + E D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 TGATGIPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234 >gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 234 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 74 CLELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 133 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231 >gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas palustris CGA009] gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 224 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G+ + LT EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL I+TV G GY+L A D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGVD-----IIQTVRGLGYLLSPPAAD 222 >gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 234 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ I L+ N+ V D G D +E+ + D +I+DL L + G E Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R P+ +L+ +S DK+ GL+ GADDYI+KPF+ +EL++RI+ I+RR+ Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +++++ V+ +I LT E++++ L N L+++ L Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+D+ I LR KL N I+T+ G GY Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+++LA + +L+ E F V + G + D ++LDL L + G E Sbjct: 3 HVLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +ALR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 ICKALRTRSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G + ++++ V V G +I L KE+ ++E L LT+ ++ Sbjct: 122 LAEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLID 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKLE 227 >gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family [Chloroherpeton thalassium ATCC 35110] gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family [Chloroherpeton thalassium ATCC 35110] Length = 239 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD +A+ +++ L + + G GIE +D IILD+ L + G E Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR I P+ +L+ S +DKV L +GADDYI+KPF+ EL AR+ A +RR R Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + + + V + I +T KE+ ++ L T ++ Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ ++ I +LR K+ YI TVWG GY Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + + L+ ++ V G++ + D I+LD+GL ++ GF Sbjct: 1 MKILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ L+ D + GL+ GADDY++KPF+ ELVARI+AI +RSR Sbjct: 61 EVCRRIR-QRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L+++ A + G I LT +E +++LL+ +K ++H++ Sbjct: 120 ANGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +D + LR K S AG IETV G G LR++ + Sbjct: 180 AGSQVSDRTLDSHLRNLRGKFSE-AGNPELIETVHGAGIRLRDSGQ 224 >gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++++ V V G I L KE+ ++E L LT+ ++ Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] Length = 227 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ +A + L E F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L++LR A + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R R S Sbjct: 61 RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +L ++ + G RI+LT KE+ ++ELL+ + L++ + + ++ Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + I TV G GY L +D Sbjct: 181 DINFDSDTNVIDVAIRRLRAKMDDDF-EPKLIHTVRGMGYRLDLPDED 227 >gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGA-----ELIRNVRGLGYMIAKEA 220 >gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 234 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A + LKSE F V + G+ I+ EF+ ILD+ L D+ G E Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R K S PV +L+ + DKV GADDYI KPF+ EL AR++A++RR+ G Sbjct: 63 VLQYIR-RKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G L +N D V+V+G+ I L KE+ +++ L+ R N +T Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I +LR K+ ++TV G GY L Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDV 122 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++++ V V G I L KE+ ++E L LT+ ++ Sbjct: 123 DDPGVPDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 230 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ LA +E L E + V V G G+ D ++LD L I G E Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV +++ + D+ GL +GADDY+ KPF+ +EL++RIR +R+ R Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +V DL ++ + V ++ LT KEY ++ L LT++ L H++ Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR K+ G K I+TV G GYVLR+ Sbjct: 190 DFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVLRD 230 >gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+K +A ++ L+ F V + GE+G+ + + Y +DA++LD+ L + G Sbjct: 1 MKILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR + PV +++ IE +++GL GADDYI KPF+ EL+AR+++++RRS+ Sbjct: 61 SILSALRSKRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ DLS++ ++++V G I L+ EY ++E L+L +++ H+YD Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +IDV++ LR KL + + I TV G GY+L+ +A Sbjct: 181 TDFDRDSNVIDVYVNHLRNKL-DKGFDRQLIHTVRGAGYILKGDA 224 >gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 239 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 117/238 (49%), Gaps = 14/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + ++L + + F V + GE +E Y + +ILDL L G+E Sbjct: 3 KVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV------------ 109 V R +R + P+ +L+ DK+ GL+ GADDYISKPF+ +ELV Sbjct: 63 VCREIR-KTSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEA 121 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A A + H I DL ++ + TV G RI + KE +++ L+ N Sbjct: 122 ACPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVF 181 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENAK 226 +E L ++ E + +DV I ++R+K+ + ++ I+TVWG GY + Sbjct: 182 NREQLLGQVWGYDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGYKFEVTGE 239 >gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 226 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L +E F+ G +E + + D I+LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + RA+R + P+ +L+ + D V GL+SGADDY++KPF +ELVARIRA +RR+ Sbjct: 64 ICRAIR-QDSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ TV+ I LT E+ ++ L+ + T+E L ++ Sbjct: 123 EPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 223 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K +A I+ L+ ++++V + G +G++ + E+ ILD+ + G Sbjct: 1 MKILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR PV +L+ + +D V GL++GADDY++KPF EL+AR+RA++RRS Sbjct: 61 TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ + V G+ I LT KEY ++E L N L++ M H++D Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ I TV G+GY+LRE Sbjct: 181 YAFDSFTNIIDVYVNYLRKKVDKEYST-KLIHTVRGQGYILRE 222 >gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 230 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A L+ V V GE G+ D ++LD+ L + GFE Sbjct: 3 RILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLPGVSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 ++ LR V +L+ + D+V GL+ GADDY++KPF+ EL AR+RA++RR Sbjct: 63 IVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRRGVG 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V G L ++ A+ V V G ++LT +E+ ++ L+ T+ L + Sbjct: 123 PEPKPAGPLVFGALEIDPAARRVRVDGRTVNLTAREFDLLYELARHPGRVYTRAELLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ I +LR K+ A Y+ETVWG GY Sbjct: 183 WGAGFSGYEHTVNSHINRLRAKIEPDAKRPVYVETVWGVGYRF 225 >gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + I+ L++ + V + G+ + + D ++LDL L ++ G E Sbjct: 3 KILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE-IDLVVLDLMLPEVDGME 61 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R +R K P+ +L+ +++ GL+ GADDY++KPF+ ELVARI+AI RR Sbjct: 62 VCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFRRI 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +I G L +++ V + +I LT KE++++ L + + L+++ Sbjct: 122 KELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLSRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + L ++ + + +DV I +LR+K+ I TV G GY + Sbjct: 182 LLLEKIWGYEYAGDTRTVDVHIRRLRQKIKADQ-----IVTVRGVGYKFAK 227 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E + V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDGTT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + GD+ + + V V+G + KE++++E L K LT+ Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ + K +DV + ++R K+ Y+ TV G GY + E A Sbjct: 182 IDRIWGADYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKIDEPA 232 >gi|187934770|ref|YP_001885970.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722923|gb|ACD24144.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 237 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E +LK E FN VY ++G+ + + +ILD+ L D G+ Sbjct: 4 KILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ + +R P+ LS + DK+ G G DDYI+KPF+ +E+ R++A +RR Sbjct: 64 EICKDIRSKSNV-PILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +I G +N + G I LT KE +++ LL+ +N ++K Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ I V I KLR+K+ + + YI TV G GY L Sbjct: 183 EKLWDKVWGEDYFGFDNTIMVHIRKLREKIEDDSSNPKYILTVRGLGYKL 232 >gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 265 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + +E L +N+ + + ++ FDA++LDLGL D G Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + + PV +LS ++ D+VRGL GADDY+ KPF+ +E+VAR+R+++RR Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G + ++L ++V G + LT +EY ++EL LT+ + +++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E +IDV++ +LR+KL A G I+T+ G GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKLE-APGQPPLIKTIRGTGYQL 264 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 68 ATKLR-EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243 >gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] Length = 231 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A +IE+ LKSE + ++ G + +E+ + I++D+ + + G + Sbjct: 5 KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ ILS S DKV GL GADDYI+KPFN E++AR+++ +RR Sbjct: 65 AIMHIR-ETSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I G LS++L+AKTV ++G + +T EY+++EL N + + Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I ++R+K+ YI+ VWG GY + +N Sbjct: 184 RVWNETSFQSENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231 >gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] Length = 231 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F GE + + D +ILDL L + G++ Sbjct: 6 KILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVR-RNNNLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + LS+NL +V G + + KE +++ L+ N T+E L Sbjct: 125 PKADTAADAKTVEYPGLSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ + + +DV I +LR+K+ + + I TVWG GY Sbjct: 185 DHIWGYEYLGDTRTVDVHIKRLREKIKDH--EQWSIATVWGIGYKFE 229 >gi|54026938|ref|YP_121180.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018446|dbj|BAD59816.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V + G D +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLTFNGYTVDLAVDGVDALEKATAQRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRA 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DLS++ + V I LT E+ ++E+L LT+ L Sbjct: 121 PDPGDTSETLRFADLSLDPVTREVSRGDRAISLTRTEFSLLEMLMANPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V+I LR+K + A G I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 225 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL G NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGE---GGNYIQTVWGVGYKFE 222 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL ED+ AL LK+E F V G + ++ ++D +ILD+ + I G Sbjct: 1 MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV +L+ ++ D+V GL +GADDY++KPF EL ARIRA++RR+ Sbjct: 61 TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+V + V G I L+ +E+ ++E L K L++ N ++D Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LRKK+ + K I TV G GY LRE Sbjct: 181 FGFEGGSNIVDVYIRYLRKKI-DDPFEKKLIHTVRGAGYTLREE 223 >gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA IEL LK E + V V + G G+ + D I+LD L I G ++ Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ I D+V GL +GADDYI KPFN EEL+AR+RA +RR+ Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+ DLS+N + + V I LT KE+ ++E L L+++ L ++ Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL A K I+TV G GYVLR+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225 >gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 620 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + IE+ L + +NV + G++ +++ K +ILD+ + + G EV Sbjct: 5 VLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++ P+ +LS S DK++G+ +GADDY++KPFN EL R+++++RR+ Sbjct: 65 CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G + ++ + +V V G+ I LT +E+ ++ LL+ K + E Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V + ++R K+ G+ I TVWG GY + Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229 >gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus subtilis subsp. spizizenii str. W23] Length = 230 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L K +D I+LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58 ++IL+ +D++ + + LK + + V D G +++ + +ILD+ + + Sbjct: 4 IKILIADDEERMRRLVADFLKKQGYAVIEADNGMKALQIIIEQKETISLVILDVMMPIMD 63 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E LR++R PV +L+ + D++ GAD+YI+KPF+ L+AR++A+++R Sbjct: 64 GWEALRSIR-QYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKR 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++L A TV V G I LT KE++++ L L++E LN + Sbjct: 123 LNININGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +V+ +D I KLR KL ++I+T+ G GY Sbjct: 183 WDYGYFGDVRTVDTHIKKLRLKLGEKG---DFIQTIRGLGYKFE 223 >gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] Length = 233 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE+ + + Y+ + ++LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRSKHNT-PIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +NL V V G + + KE +++ L+ N T+E Sbjct: 125 AKPETPAASRGKVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDQIWGYEYVGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGYKFE 231 >gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ + G + FD +ILDL + + G Sbjct: 3 KILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R I+TPV IL+ DK+ GL+SGADDY+ KPF+ ELVAR+RA++ R+ Sbjct: 63 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTMP 122 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G+L+++ + TV V G + LT KE+ ++ L+ K L++E L + Sbjct: 123 RPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +D + LR L ++YI TVWG GY +A Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLG---KCRSYIATVWGIGYKFDPDA 226 >gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] Length = 226 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ LA +EL L+ E + V G +G+E FD ++LD+ L + G E Sbjct: 3 KILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV +++ ++ DKV GL SGADDYI+KPF EEL+ARIRA +R+ Sbjct: 63 VLRRLRRESQV-PVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S + G L+++ + V V+G + LT +E+ ++ L K +++E L++++ Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E +DV+I LR K+ A G I TV G GYV+RE + Sbjct: 182 FDFVGETNAVDVYIRFLRAKIDEAFGI-KLIHTVRGVGYVIREENE 226 >gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 233 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE ++ + D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + Sbjct: 66 VCREIRHNSDV-PIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++NL +V G ++ + KE +++ L+ N T+E L Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGYKFE 229 >gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1] gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1] Length = 243 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++++ +E+ E G +G + K E+D +ILD L + G Sbjct: 10 MKVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDGV 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARIRA+ RR + Sbjct: 70 TICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQ 129 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174 G + I T D ++ + + V ++G + +LT KE+ ++ LS ++E Sbjct: 130 GEKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ + + +DV I +LR K+ + K Y+ TVWG GY E A + Sbjct: 190 LERVWGYDFYGDERTVDVHIKRLRNKIGSN--EKPYLHTVWGVGYKFDETAAGD 241 >gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321] gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321] Length = 235 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 243 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F V V + G+ L D I+LDL + G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+AR+ A++RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRPA 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241 >gi|16127265|ref|NP_421829.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus CB15] gi|221236066|ref|YP_002518503.1| cell cycle response regulator CtrA [Caulobacter crescentus NA1000] gi|295690880|ref|YP_003594573.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|239977105|sp|B8H358|CTRA_CAUCN RecName: Full=Cell cycle transcriptional regulator CtrA; AltName: Full=Response regulator SokA gi|239977106|sp|P0CAW8|CTRA_CAUCR RecName: Full=Cell cycle transcriptional regulator CtrA; AltName: Full=Response regulator SokA gi|1151107|gb|AAA93080.1| cell cycle transcriptional regulator [Caulobacter crescentus CB15] gi|13424677|gb|AAK24997.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus CB15] gi|220965239|gb|ACL96595.1| cell cycle response regulator ctrA [Caulobacter crescentus NA1000] gi|295432783|gb|ADG11955.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 231 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 160/226 (70%), Positives = 194/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LRVAKI+TP+ ILSG S I+ KV+ GADDY++KPF+K+E++ARI A+VRRS+ Sbjct: 61 DVLRTLRVAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRGYVLRDPNE 226 >gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 229 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 5/226 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D+K + + L + G +++ + D IILDL L D+ G Sbjct: 1 MKNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPDLSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R P+ +L+ ++ GL GADDY+ KPF+ E+VAR++AI+RRS Sbjct: 61 EEVCREIRRQSAV-PILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRS 119 Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL V+ KTV G +HLT EY++I++L+ ++E + Sbjct: 120 ADDLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ + + ID + LR K+ Y +TV+G GY Sbjct: 180 KLFGFDYSGDERTIDQHVKNLRNKVEPDPKNPTYFKTVFGFGYRFE 225 >gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 225 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ + E V G D +E + +FD I++D+ + + GF Sbjct: 3 KILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIMMPRLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + ++ + PV +LS DK+ G + G DDY+ KPF+ +EL+AR+ I R + Sbjct: 63 AYKEIK-KTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ L ++LD ++V V G R+ LT KEY+++ L+ KN L++E LN ++ Sbjct: 122 LNDNRVMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +D I LR + + + +I TV G GY E+ + Sbjct: 182 YDFYGDDRTVDTHIKMLRNSIKHY---RKFIVTVRGVGYKFEEDENN 225 >gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 121/226 (53%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++ I L L E + G +E+ + + D ++LD+ L ++ G++ Sbjct: 3 KILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPELDGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR+ Sbjct: 63 VCKEIRKQHRT-PIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRRNTQ 121 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ IV +L ++ D +V +G + L KE +++ L+ T+E L+ Sbjct: 122 PIEEVAPKNRIVLDNLIIDKDNYSVTYEGALVELPPKELEVLYFLASHPKQVFTREQLLD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR K I+TVWG GY Sbjct: 182 KIWGYDFVGDTRTVDVHIKRLRDKFEGD--HTWSIKTVWGVGYKFE 225 >gi|251778767|ref|ZP_04821687.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083082|gb|EES48972.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 237 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E +LK E FN VY ++G+ + + +ILD+ L D G+ Sbjct: 4 KILIVDDEIEILKLLETVLKKEGFNSVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ + +R P+ LS + DK+ G G DDYI+KPF+ +E+ R++A +RR Sbjct: 64 EICKDIRSKSNV-PILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +I G +N + G I LT KE +++ LL+ +N ++K Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++ I V I KLR+K+ + + YI TV G GY L Sbjct: 183 EKLWDKVWGEDYFGFDNTIMVHIRKLREKIEDDSSNPQYILTVRGLGYKL 232 >gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33] gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7] gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407] gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3] gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407] gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7] gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein, C-terminal [Streptococcus suis GZ1] gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14] gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3] Length = 234 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIR-KTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV I +LR+K+ + YI T G GY Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGY 228 >gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 242 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ ++ + + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIIEPGEE 242 >gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ A+ I + LK F+V+ G + + FD ++LD+ + ++ GFE Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 A+R + + +L+ + EDK+ GL GADDYI+KPF+ ELVARI+A++RR Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G +++L AK V G I LT EY +I L + L+++ L+ + Sbjct: 123 VKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDAV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I +LR+K+ + YIET+WG GY R Sbjct: 183 WGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] Length = 238 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 14/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF------------YEFDAII 49 R+L++EDD+ + +++ L+ E F+V G D + + F ++ Sbjct: 4 RLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFALVV 63 Query: 50 LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 LDL L + G +V RALR A TP+ ++S S D+V GL+ GADDY+ KPF ELV Sbjct: 64 LDLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMRELV 123 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 AR RA++RRS + V ++ L V G ++L+ KEY+++EL Sbjct: 124 ARCRALLRRSASQGAAEKVLEHANIKLYQEECRVTRDGLPVNLSPKEYRLLELFMQHPRR 183 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ L H++ + K +DV I LR+K+ ++ TV G GY Sbjct: 184 VWSRDKLLEHVWGVDYFGDSKTVDVHIRWLREKIEEEPSAPCHLVTVRGFGYRF 237 >gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F +Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251 >gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD A+ + LK+E V G E D ILD L + G ++ Sbjct: 4 ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQL--PRADLAILDWMLPGVSGVDL 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R R + ++ P+ +L+ EDK+RGL G DDY+ KPF+ E+VAR+RA++RR Sbjct: 62 AREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRVGVQ 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + GDL ++L + + G R+ L+ E+ ++ L+ +E L ++ Sbjct: 122 EEIAV--GDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWGSD 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++DV I LRKKL + + +IETV G GY RE Sbjct: 180 FPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRFREE 221 >gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + V GE+ ++ + ++LD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R P+ +L+ +D++ G + G D+YISKPF+ + LVAR+ AI+RR+ Sbjct: 65 EVVKEIR-KVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTV 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G + +++ V + G I+L+ KE+++++ + LT+E LN +++ Sbjct: 124 QTEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR KL YI T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS---YIHTIWGMGYKFE 222 >gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + + D ILD+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 LCYELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222 >gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] Length = 228 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 8 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ IL+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 68 CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 127 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225 >gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 110/221 (49%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + L + + + G++ + + +D ++LD+ + ++ G V Sbjct: 6 VLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 66 CKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q I G + +N ++ VE G I LT KE+ ++ L ++E L ++ Sbjct: 125 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 185 DYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRSRSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDA 122 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G + ++++ V V G I L KE+ ++E L LT+ ++ Sbjct: 123 DDAGIGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911] gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911] Length = 238 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ EN+ + G + +E ++D I+LDL + G E Sbjct: 6 KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + +TPV +L+ ++V+G ++G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCRELR-ERKATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSST 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L+++ DA V G + LT KEY+++ L+ + +E Sbjct: 125 TSYLQTETAAKDVIVFRHLTIDNDAHRVIADGKEVSLTPKEYELLYFLAKSPDKVFDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEQAARMIVTVWGVGYKFE 234 >gi|13472497|ref|NP_104064.1| two-component transcriptional regulator [Mesorhizobium loti MAFF303099] gi|260462502|ref|ZP_05810709.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319781794|ref|YP_004141270.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023243|dbj|BAB49850.1| two-component transcriptional regulator [Mesorhizobium loti MAFF303099] gi|259031698|gb|EEW32967.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317167682|gb|ADV11220.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 231 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 171/225 (76%), Positives = 197/225 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL A+GG+NYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAASGGQNYIETVWGRGYVLREPE 225 >gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363] gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp. cremoris NZ9000] gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis CV56] Length = 233 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E F V+ GE+ +E K + D I+LDL L + G + Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R TP+ ++S S DKV GL+ GADDY++KPF+ EL+ARI+A +RR Sbjct: 63 VAREIR-KTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G+L +N ++ LT +E++++ L+ +T+E Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRENL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV + +LR+K+ + Y+ T G GY Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGY 226 >gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 227 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F V G + + + D ++LD+ L + GF+ Sbjct: 4 RILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R Sbjct: 64 VCRAIRH-VSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +T DLS+++ V+ GH I LT E+ ++ L+ ++E L ++ Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGYR 222 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D++ + + L+ E + G + IE K F ++LD+ + ++ G Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +L+ S D++ GL+ GADDYI+KPF+ EL+ARI A +RR+ Sbjct: 67 ACMRIR-EFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G LS++++ + V V+G ++LT KE+ ++ L ++E L+ + Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ +D I LR KL A G YI+TVWG GY N Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes] Length = 233 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G EV Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G A Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121 Query: 124 QSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 122 EIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ +++ E +I+DV + LR K+ YI+T+ G GY + Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHE 233 >gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 234 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 73 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I+T+ G GY L Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 231 >gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 243 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 20 VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 80 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139 Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ +L+ L+++ L ++ Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + DVFI LR+KL G I TV G GYVLR+ Sbjct: 200 YDFDVDTNVADVFISYLRRKLERD-GLPRVIHTVRGIGYVLRDE 242 >gi|56750974|ref|YP_171675.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81299367|ref|YP_399575.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56685933|dbj|BAD79155.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81168248|gb|ABB56588.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 237 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L + + V G + + + D +ILD+ L D G++ Sbjct: 5 KILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNLPDTNGYQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ V +L+ D + G GADDYI+KPF+ + ARI AI+RR R Sbjct: 65 LCEIVQKRTGVY-VILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V G I LT E+ ++ L+ + + + + Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNELIQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I ++RKKL I+TV G GY Sbjct: 184 WEYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227 >gi|197104317|ref|YP_002129694.1| cell cycle transcriptional regulator CtrA [Phenylobacterium zucineum HLK1] gi|196477737|gb|ACG77265.1| cell cycle transcriptional regulator CtrA [Phenylobacterium zucineum HLK1] Length = 231 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 163/226 (72%), Positives = 193/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LRV KI+TP+ ILSG + IE KV+ GADDY++KPF+K+ELVARI A+VRRS+ Sbjct: 61 DVLRTLRVGKINTPIMILSGTAEIETKVKTFTGGADDYMTKPFHKDELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDITVNLDAKTVEVNGIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ AA GK++IETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAAADGKHHIETVWGRGYVLRDPQE 226 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7] gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ + +E L + F V+ G + +E + + + I+LDL L DI G Sbjct: 1 MKILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLMLPDISGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R P+ +L+ S+ D + GLQ GADDYI KPF+ +ELVAR+ ++RRS Sbjct: 61 VICQKIR-KTSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRSD 119 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+L + + K V + LT E++++ LL+ ++E L Sbjct: 120 SSVVTETKWSFDKGNLVIYPENKQVFKNQKEVILTPTEFELLTLLASYPKKIFSREQLLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + +IID I LR+K+ + +I TV+G GY KDE+ Sbjct: 180 NVKGLEFDVLDRIIDSHIKNLRQKIEDNTRQPYFILTVYGMGYRFG-GKKDES 231 >gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 237 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A ++L L+ E +++ G G+ + + +DA+ILDL L I G E Sbjct: 6 KILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 66 ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L + L+++ A+ V + I LT +E+ ++ + ++ L Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVHLNQQTIDLTPREFDLLYFFAKHPGKVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ + E ++ I +LR K+ I TVWG GY Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGMGYKF 231 >gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU121] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKFEM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L L++ +F V+ G++ +E K + +ILD+ + ++ G E Sbjct: 4 KILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ P+ LS SS++DK+ GL GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 64 VLK-TIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++I G+LS + D + + G+ ++L KEY+++ + TK+ +L+ Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I V I LR+K+ + I T+ G GY+LR+ Sbjct: 183 YYFEDDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYMLRKE 225 >gi|159044057|ref|YP_001532851.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae DFL 12] gi|157911817|gb|ABV93250.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae DFL 12] Length = 237 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 155/230 (67%), Positives = 187/230 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A SIELML N NVY T +GE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILIIEDDPTTAKSIELMLTHANLNVYCTAMGEEGIDLAKLYDYDLILLDLGLPDMTGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R+A+I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQIRLARIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG++ VNLDAKTVEV G ++HLTGKEYQ++ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIKTGEILVNLDAKTVEVDGMQVHLTGKEYQILELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKLS A GG+N+IETVWGRGYVLR+ E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGENHIETVWGRGYVLRDPDPVEAP 230 >gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter aphrophilus NJ8700] gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter aphrophilus NJ8700] Length = 223 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + I++ L F V G+ G+E + +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKIGLEAAQSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+A R I PV IL+ ++++++ GLQ GADDY+ KPF E+VAR+ A++RR Sbjct: 61 DVLQAWRQKGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA +I + + + V + I LT +EY+++EL L K L++ LY Sbjct: 121 GHANPVIQHSLVRFEPNQRKVFLCDQEISLTTREYKLLELFMLNKERVLSRNFIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +E ++V I LR+KL K +I TV G GY L +N +++ Sbjct: 181 WDNEVSSNALEVHIYNLRQKLG-----KQFIRTVHGVGYALGKNDEED 223 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G +G ++ Y+ D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL + + V V +++ LT KE++++ +++ ++ Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR KL +I TVWG GY N +ET Sbjct: 183 LELIWDFEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] Length = 224 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L H I L++E + V G D + +DAI+LD L GF Sbjct: 1 MKILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLPGKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R KI TPV L+ ED V GL GADDY+ KPF+ EE++AR+R I++RS Sbjct: 61 EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++ D K+V G I L+ KEY ++E + KN L++ ++ + Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV+I LRKK+ + I+TV G GY+L E Sbjct: 181 LDFEDESNIIDVYIRYLRKKIDDDFDV-KLIQTVRGIGYMLTEP 223 >gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G RI+LT EY + L++ +N T E Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 229 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E+F V G + ++ Y D I+LD+ L GF+ Sbjct: 4 KILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKNGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K P+ LS DKV GL+ GADDYI+KPF+ E+VAR++A++RR + Sbjct: 63 ICREIR-DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++L+A+TV+V + LT KE+ ++ L++ T+E LN + Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +D I ++R+K+ G Y+ TVWG GY Sbjct: 182 WGYDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGYRFEVPE 228 >gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319] gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319] Length = 238 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D+ + +++ L+ E + + G + IE ++D I+LDL + I G E Sbjct: 6 RLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 ACKQIR-EKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LLREVWHYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFE 234 >gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 229 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E F V + G + + +D I+LDL L + GF Sbjct: 1 MRVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A PV +LS S + D+VRGL GADDY++KPF+ +EL ARIRA++RR Sbjct: 61 EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ +T G + L+ KE+ ++E L L++ L H++D Sbjct: 121 HERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D +I LR+K+ + G + +ETV G GY L Sbjct: 181 FAYDGTSNVVDQYIAYLRRKI-DRPFGISQLETVRGAGYRL 220 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-ENRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D V V+G LT KE+ ++ELL K L+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 232 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F G ++ + D ++LDL L + G + Sbjct: 11 KILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLMLPGMNGID 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + D V GL+SGADDYI+KPF +EL+AR+RA +RR+ Sbjct: 71 ICRIIRQESAV-PIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELIARLRARLRRTED 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GDL++++ V I LT E+ ++ L+ + T+E L ++ Sbjct: 130 SPSETIEIGDLTIDVLGHEVTRGDEEIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R+ + ++++V + +LR K+ + + TV G GY Sbjct: 190 RNASDTRLVNVHVQRLRSKIEKDPENPHIVLTVRGVGYK 228 >gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I+ LK E FNV + G+D +++ K + ++LD+ + + G+ Sbjct: 5 ILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMDGWTT 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + +R PV +L+ + ED++ G + G D+Y++KPF+ + LVA+++A+ R Sbjct: 65 CKEIR-KISQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKRAYPD 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L +N A ++ I+L+ KE++++ + K L++E L+ ++ Sbjct: 124 ENNQDNFFDGLYINEKAHETKINDEDIYLSPKEFELLSYFAKNKGMVLSREQILDSVWGI 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR+KL A I TV G GY Sbjct: 184 DYYGDLRTVDTHIKRLREKLGEKAY---LISTVRGTGYKFE 221 >gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes (paired with YvrG) [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ I+ +L+ E + + E+ I + K + D I+LD+ + + GFE Sbjct: 17 ILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 77 ACTLIR-EYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 135 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + V G + + + Q+++ N L+K+ Sbjct: 136 SKETNSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 195 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I KLR+K+ YI TV G GY N + Sbjct: 196 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 244 >gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] Length = 225 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + LK V G+DG+ L +DA+++D L G Sbjct: 1 MKILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL LR P +LS +SS+ED+V+GL++GADDY+ KPF EL+AR+ A R Sbjct: 61 SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++L A++V G + L +E+ ++E L +T+ M L ++ Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV I +LR+K+ I TV G GYVLR Sbjct: 181 DYHFDPQTNVIDVHIARLRQKIDKDHPAP-LIHTVRGAGYVLRAPG 225 >gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] Length = 239 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPEQRDA 239 >gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 228 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD ++ + LK E + V G+ G+ L +DA ++D+ L ++ G Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++R LR + + PV LS +S+ED+V+GLQ+G DDY++KPF EL AR++A I R S Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + + GD++++L ++TV V G + L +E+ ++E L +TK M L H++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ ++DV + +LR K+ K IET+ G GYV + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPD---KTRIETLRGVGYVFK 225 >gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] Length = 234 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ L S+ L T GE G+E + +FDAI+LDL L I G Sbjct: 12 MHILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLMLPGIGGL 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR I TP+ IL+ + S++D+V+GL GADDY+ KPF EL+AR+ A+ RR+ Sbjct: 72 EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+++L ++ V I L+ E+ ++ELL ++++M HL+ Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +IDV I LR+K+ I TV GRGYVLR Sbjct: 192 QDWNGMTNVIDVHINHLRQKVDRGFDEP-LIHTVRGRGYVLR 232 >gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1] gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1] Length = 226 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+K +A +EL LK++ F VY G + ++ + D ILD+ L DI G Sbjct: 1 MKVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +L+ + DK+ GL GADDY++KPF EL+AR++A +RR + Sbjct: 61 EICQTIR-ENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYK 119 Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G L+++ D + + LT E+ ++ LL K +T + Sbjct: 120 TMTPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQ 179 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ + I V I LR+K+ ++A YI+TVWG GY + Sbjct: 180 ELWGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGYKI 225 >gi|311032119|ref|ZP_07710209.1| two-component response regulator [Bacillus sp. m3-13] Length = 236 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++D++++ ++L+L E F V GE + K + +D I+LD+ L D+ G+ Sbjct: 5 RILMVDDEQSIIDMMKLVLTKEGFQQVDTCSTGEMALHKLKHHAYDLILLDIMLPDMTGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA----IV 116 E+ +A+R P+ LS +S DK+ G G DDYI+KPFN E+VARI+ + Sbjct: 65 EICQAIR-KTTDAPIFFLSAKTSDLDKLTGFAHGGDDYITKPFNPLEVVARIKVQLSRYL 123 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + ++ G ++NL + + V G + L+G+ Y ++ N TKE Sbjct: 124 KTTTSKKEDVLEFGRFNLNLQSAELTVLGESVVLSGQLYHLLVFFCKNPNRIFTKEQLYY 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 H++ + + V I KLR+K+ YI+TV G GY L A ++ Sbjct: 184 HVWKDNILVDENTVMVHIRKLREKIEENPSKPEYIKTVRGIGYKLVPAAGNQ 235 >gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] Length = 235 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ EDD+ + + L+SE + V GE+ ++L K FD ++LD+ + G++ Sbjct: 4 HILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKSGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ DKV GLQ GADDYI+KPF EL+ARI A++RR+R Sbjct: 64 VCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRRARR 123 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + L G+ ++ + I L+ +E ++++ L N L+++ Sbjct: 124 NHEEAKKGENVPDLFKFGESQIDAKTFKMMKGRKSIDLSEREVKLLQFFFLHANEVLSRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 LN ++ + +D I +LRKK+ +I TV GY Sbjct: 184 QLLNAVWGIDYYGTTRTLDQHIAQLRKKVERDPSNPRFIRTVHRVGYR 231 >gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] Length = 234 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A+ +E LK E ++V V + GE +EL D I+LDL L G E Sbjct: 5 KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVRAKKNI-PIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123 Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + + + +A ++ G I LT +E+ + L+ + LT+E Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + + YI T G GY + E Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGEE 234 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K +A ++L L+ E + G DG+E + + +D ++LD+ L ++ G E Sbjct: 3 RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R+ TP+ +L+ +SI DKV GL GA+DYI+KPF EEL+AR+RA +R + Sbjct: 63 VLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQT 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +L++N + V+ I LT KE++++ K L++E L +++ Sbjct: 123 RERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDV++ LRKKL ++TV G GY L+E Sbjct: 183 GFDYYGDTNVIDVYVRYLRKKL----SLTEALQTVRGVGYRLKE 222 >gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 227 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ L +E F V VT G G+ +D I+LDL L G+ Sbjct: 1 MRVLLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + TPV +L+ D+ GADDY++KPF+ LVARIRA++RR Sbjct: 61 DVLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ +++V I LT +EY ++ L ++K L++++D Sbjct: 121 PERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++V+I LR+K+ + G + TV G GY+L + Sbjct: 181 PAFEGGDNVVEVYIGYLRRKI-DVPFGLQTLATVRGMGYMLGAD 223 >gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 225 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ L + L++E F V V G DG+ + + + +DAI+LD+ + + G+ Sbjct: 1 MRILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A+ TP+ +L+ D+V L +GADD++SKPF+ LVAR+R++VRR Sbjct: 61 TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ A+ V I LT +E+ ++E L ++K L++++D Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + I++V++ LR K+ + G+ IET+ G GY L Sbjct: 181 GDFEGDPNIVEVYVRHLRNKV-DRPFGRASIETLRGAGYRL 220 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 9/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+ A+ S+ L +NV + G +E+ + + +ILD+ + + G Sbjct: 1 MKVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VRRS Sbjct: 61 EVCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSA 120 Query: 121 GHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + GDL++N + + V I LT E+ ++ELL L + Sbjct: 121 VESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRN 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LR+K G I TV G GYVLRE A Sbjct: 181 TILEEVWGYDFPTSGNALEVYIGYLRRKTEQE-GESRVIYTVRGVGYVLRETAP 233 >gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 236 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G + + + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 235 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+D+ ++A + M + + G +G+ + + D +I+D+ + + GF Sbjct: 3 KILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R I+ PV LS I DK G Q+G DDY+ KPF+ EL+ I A +RR+ Sbjct: 63 TCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRASM 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ G ++ V G R+ LT KE+++ L+ L+KE + Sbjct: 123 AAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQLV 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + E I VFI KLR+K+ + I+TVWG GY ++ Sbjct: 183 EAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGRE 234 >gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + + Y+ + ++LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +LS + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCRELRAKSQV-PIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L++NL +V G + + KE +++ L+ N T+E Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + G + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPGWG--LSTVWGIGYKFE 231 >gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 243 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 20 VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 80 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139 Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ +L+ L+++ L ++ Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + DVFI LR+KL G I TV G GYVLR+ Sbjct: 200 YDFDVDTNVADVFISYLRRKLERD-GLPRVIHTVRGIGYVLRDE 242 >gi|296444660|ref|ZP_06886624.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257928|gb|EFH04991.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 172/228 (75%), Positives = 201/228 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLVVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE ++ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPSEAD 228 >gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 228 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ +DD +L + +L SE + V G + ++ FD +ILD+ + I G Sbjct: 2 MRVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVMMPHIDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R I+ PV +L+ +EDKV+GL GADDY++KPF+ +EL+AR+RA++RRS Sbjct: 62 SLLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSE 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ L ++ ++ V G I LT KE+ ++E L KN +++ H++ Sbjct: 122 GRHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWG 181 Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +P IDV I LR+KL AG I+TV GY++ + + Sbjct: 182 DAFDPFTMSNFIDVHIKNLRRKLG-DAGNDKIIQTVRSVGYMIEDGEQ 228 >gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +D++ L LK++ + V D G+D + +D ILD+ + G Sbjct: 1 MRILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR A + PV +L+ + ++ D+V GL +GADDY++KPF +EL+ARIR ++RRS Sbjct: 61 SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL++ L +TV G I L+ KEY ++E L K L++ +H++D Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV++ LR+K+ + K I+TV G GY +R+ Sbjct: 181 YDFEGGSNIVDVYVRYLRRKI-DDPFEKKLIQTVRGVGYTIRQ 222 >gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42] gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY] gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 243 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + L E F V V + G+ + D I+LDL + G Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV I +LRK + A YI+TVWG GYV + Sbjct: 190 LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241 >gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 232 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +D+ + + L K E F V G + + + + D I+LD+ + + GFEV Sbjct: 7 VLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIMMPVLDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ +D++ GL+ GADDYI+KPFN E+VAR++A++RRS Sbjct: 67 CKQVR-KISDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRRSSQF 125 Query: 123 AQSLIVTGDLSVNLDA----KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS +L V G + T KE +++ L+ ++ L + Sbjct: 126 LQSQNKQVLEYPDLMINLSEYRVVAFGREVIFTAKEMELLWCLASNPGIVFSRNQLLEKI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I ++R KL K I TVWG GY Sbjct: 186 WGYTYYGDTRTVDTHIKRVRHKLDIPKDAKWDIVTVWGVGYKFE 229 >gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 236 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +E+ LKSE + GE+ + + + D +ILD+ + + G + Sbjct: 7 VLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPKLNGIDT 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 67 CLKIREEREM-PIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125 Query: 123 AQSLIVTGDL----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++NL+ V + + + LT E+ ++ LL+ + + E Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ + +I+TVWG GY + + Sbjct: 186 NIYESVWNQEFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236 >gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08] Length = 229 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +LL+ED+ L ++ L SE ++V G++ ++L + D I+LDL L D+ Sbjct: 1 MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMS 60 Query: 59 GFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G E+ R LR +TP+ +++ D++ G + GADDYI KPF+ E + R+ A++ Sbjct: 61 GLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAML 120 Query: 117 RR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +R + + I+ G L +++ A V+++ + LT KE+ ++ L R T++ Sbjct: 121 KRSGDKINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDA 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ E + +D + +LR KLS+ IETV G GY Sbjct: 181 LLDDVWGYNCEVTTRTVDTHVKRLRAKLSDVGNN---IETVRGVGYRF 225 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L ++V GE+ +E+ + D ++LD+ + + G+ Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDGYG 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 68 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +I GD+ ++ + + V + RI LTG E+ ++ELL R ++ L Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 235 >gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 236 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + G + I + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEVR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S I GDL + DA + +G I LT +E++++ L+ +T Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ + VY GE+ +E D I+LD+ L + GF Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ L+ + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 65 VCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G L V+ + + V G RI LT E+ ++ELL + Sbjct: 124 TVTVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183 Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 228 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L+S ++ G+ Y+ D ++LD+ L + G + Sbjct: 7 KILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDYI KPF +EL+ARI+A++RR Sbjct: 67 VLKWIRKESET-PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V ++++++ V + + I + KE++++ L+ N T+E L ++ Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKENEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + + +DV I +LR+KL GG N+ IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGYKFE 226 >gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)] gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 256 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A + L + V G + + + D ++LDL L + G E Sbjct: 30 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 89 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR PV +L+ +D+V GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 90 VCRRLRGQ-GPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 148 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A L+ + A+ G + LT +E+ ++ +E + ++ Sbjct: 149 APAPRPPSAAGLTADPAARRATKDGAELALTLREFDLLAFFLRHPGRAFAREELMREVWG 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + V + +LR K+ + I+TVWG GY ++ Sbjct: 209 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFDPAGRE 254 >gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 RIL+++D+ + + LK + + D G+ + L D IILD+ L + GF Sbjct: 5 RILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPEYDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R P+ +L+ D+V GL GAD+YISKPF+ L+AR+ A++RR+ Sbjct: 65 TVCREIRKKSKV-PIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRAN 123 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ A V + G + L+ KEY+++ LS L++E L+ + Sbjct: 124 SEDKGKELKDFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ +D I +LR KL + +YI+TV G GY E Sbjct: 184 WGYDYYGDLRTVDTHINRLRIKLDRKS---DYIQTVRGYGYRFEE 225 >gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205] Length = 249 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 9/237 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L + V G++ +E + D ++LD+ + + G+ V Sbjct: 12 ILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVMMPKLDGYGV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 72 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIGKE 130 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I ++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 131 GAAGIPNSGVIQINEIRIDTNKRQVFRGDERIRLTGMEFSLLELLVGRSGEPFSRGEILK 190 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + +++DV I +LR KL + I T G GY+ + + E Sbjct: 191 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVEAVAPE 247 >gi|87198328|ref|YP_495585.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134009|gb|ABD24751.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 233 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 157/224 (70%), Positives = 191/224 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG+S ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRDP 224 >gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 224 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G +++ + D ++LDL L + G E Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 64 VCRQVRAESDV-PIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+++++ TV RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 KAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221 >gi|302542452|ref|ZP_07294794.1| transcriptional regulatory protein PcoR [Streptomyces hygroscopicus ATCC 53653] gi|302460070|gb|EFL23163.1| transcriptional regulatory protein PcoR [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L++E F V V G +G+ + +D I+LD+ L + G+ Sbjct: 1 MRLLIVEDERRLALSLAKGLRAEGFAVDVVHDGREGLHRAQEGTYDLIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G L+V+ A+ VE G + LT KE+ ++E L++ +K L H++D Sbjct: 121 SGASPVVRVGALAVDRGARRVERDGDEVSLTAKEFSVLEHLAMNGGDVCSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++V++ LR+KL +IETV G GY LR Sbjct: 181 FAYDGDPNIVEVYVSALRRKLG-----PGFIETVRGAGYRLR 217 >gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxidans DMS010] gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxydans DMS010] Length = 230 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD A+ + LK F GE G++ K + D I+LD L I G E Sbjct: 5 VLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLPGIDGIEF 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R LR + + PV +L+ ED V+GL GADDY++KPF+ EL+ARIRA++RR + Sbjct: 65 IRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLRRCQ 124 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+L ++ + V V RI L E++++ + L++ Sbjct: 125 PDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQLLDY 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I +LRK L ++G + I+TV G GY + Sbjct: 185 VWGDTVYIEERTVDVHIRRLRKALE-SSGHDHLIQTVRGVGYRFSVD 230 >gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W] gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W] Length = 254 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251 >gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 266 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD + + L F V G+ E FD I+LD+ + GF Sbjct: 34 RLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIMMPGDDGFT 93 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R P+ +L+ + D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 94 LCKEVRTKSNI-PIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRYEE 152 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFL 175 +I GD S++L + ++ Q + L G ++ +++L R L+++ Sbjct: 153 TAVVPKVAEIIRFGDFSLHLTNRELQYQDNPPEALNGADFNLLKLFLSRPGEVLSRDDLS 212 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +HL P + IDV I +LR KL + I+TV G GY+L +E+ Sbjct: 213 HHLRGRDASPFDRSIDVQISRLRSKLRDDGKSPQLIKTVRGAGYILTAPVVNES 266 >gi|84686906|ref|ZP_01014790.1| two component transcriptional regulator, winged helix family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665103|gb|EAQ11583.1| two component transcriptional regulator, winged helix family protein [Rhodobacterales bacterium HTCC2654] Length = 237 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 154/228 (67%), Positives = 186/228 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYSTDLGEEGVDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K+RG GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGNDDTENKLRGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAK+VEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIQTGRVAVNLDAKSVEVDGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+ A G+NYIETVWGRGYVLR+ E Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATEGENYIETVWGRGYVLRDPQPVE 228 >gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 5/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M++LL+ED+K++ + + LK E + V GE+ ++L + ILD+ L I G Sbjct: 1 MKVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLADQQTDIVIAILDVMLPGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV LR + +L+ S DKV GL+ GADDY+SKPF+ EL+AR++A+ RR Sbjct: 61 FEVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRRL 120 Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ I + LD + + I LT KE+ +I+LL+ N ++++ L Sbjct: 121 TPIPEAEDKNEINIAPFRLLLDERKLIRTEQEIDLTPKEFAIIKLLAENANKAISRDEIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ ++KI+DV I ++R+K+ + ++ETVWG GY+ R++ DE Sbjct: 181 TAVWGQFFVGDLKIVDVNIRRIRQKIEDDPAHPAFLETVWGYGYLWRKDVPDE 233 >gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 254 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251 >gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I+ L+ E F+ + G + + + + D IILDL + + G Sbjct: 1 MDILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMIPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D+V GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVE-----VQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +G + T V++D +T Q + LT E+ ++ + Sbjct: 121 SLRQGGQNQVSRTQHFIVDVDQRTASRQIDAHQAEALDLTTLEFNLLSTFVSNPGRVWNR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ + +++D + +LRKK+ ++I+TV G GY ++ Sbjct: 181 TQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFEDS 233 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 65 VCKEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222 >gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ + + E D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 VGAAGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234 >gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 222 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A++RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + G+L ++ A+ V + I LT KE+ ++E L LR ++K L H+ Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + + I++V+I LR+KL I+TV G GY L Sbjct: 181 WDFAYDGDPNIVEVYISTLRRKLG-----PTLIKTVRGAGYRLE 219 >gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 225 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 125/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ + IE L +N+ V + G+ E +++D I+LD+ L + G Sbjct: 1 MKILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TP+ +L+ +I+D+V+GL +GADDY+ KPF+ EEL AR+RA++RR Sbjct: 61 SLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L V+ + V Q + L+ KEY+++E ++ L+HL+ Sbjct: 121 TSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + I LR+KL A + IETV+G GY L+E Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKE 223 >gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 237 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I++ LK E ++ + GE+ + + + D IILD+ + + G E Sbjct: 5 RILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIMMPKVNGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL +GADDY++KPFN ELVAR+R+ +RR + Sbjct: 65 ACLKIREEREM-PIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYKR 123 Query: 122 HAQ------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +++ ++S+NL+ V G I LT E+ ++ LL + Sbjct: 124 FNNTLAKEELVVKQDNVLEIDEISINLETHEVFKDGEEIKLTPTEFDILVLLGENRGKVF 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E N ++ + V I K+R+K+ +I+TVWG GY + Sbjct: 184 SIENIYNSVWKQEFMQSDNTVMVHIRKVREKIEEDPRKPKFIKTVWGVGYKI 235 >gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 74 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 133 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231 >gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A I + L+ E ++V GE+ + + + D +ILD+ + + Sbjct: 1 MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +RV P+ LS +S DKV GL GADDY++KPF ELVAR+ A +R Sbjct: 61 DGYEVTRQIRVKYNM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + G + +NL+ + + V G +I LT KE+ ++ LL + Sbjct: 120 RFLTLNQPKVEENKSVLEVGGVVINLEQRKLNVYGEQIELTPKEFDILYLLVSHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L ++ + V I LRKK+ I+TVWG GY Sbjct: 180 VENILQQVWADDYYDGGSTVAVHIRTLRKKIGEDTRKNKLIKTVWGVGYTF 230 >gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 236 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++ED+K + + L+ + V + GE E+ + + D +LD+ L + GFE+ Sbjct: 6 IYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGVDGFEI 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + ++ P+ +L+ + D+V GL+ GADDYISKPF+ E VAR++ RR Sbjct: 66 CKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFRRQA 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G ++++ + + V I +T KE+++++LL + + L+++M L Sbjct: 126 DSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDMLLQK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E + +DV I LR+K+ + YIETV GY + E Sbjct: 186 IWGFDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRCIGYRFSDKEVRE 236 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D +E Y D I+LD+ + + G Sbjct: 14 RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A+ + P+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 74 AARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 133 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + D ++L + V + LT E+ ++E+L LT+E Sbjct: 134 AVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQVLTREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR + + Sbjct: 194 ILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGSGE 246 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + GDL+VN D + V V+G LT KE+ ++ELL K L+ Sbjct: 123 YNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228 >gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293] gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293] Length = 218 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q G + +N ++ +EV G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 225 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 5 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ IL+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 65 CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 124 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 184 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222 >gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 226 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++LKSE F + G+ + + D ++LDL L G E Sbjct: 4 RILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ S D V GL+SGADDY+ KPF +EL+AR+RA +R S Sbjct: 64 VCREIR-EISSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A L+ GD+ V++ TV G I LT E+ ++ L+ + ++E L ++ Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + I TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGYK 221 >gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 226 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F+ G ++ + D I+LDL L + G E Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ + D V+GL+SGADDYI KPFN +ELVARIR +R + Sbjct: 64 ICTRVRAESGV-PIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLRPVQV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL V++ A V + I LT E++++ L+ + ++EM L ++ Sbjct: 123 PVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + TV G GY Sbjct: 183 HYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGYR 221 >gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ I++ L E + V G++ IE + +E D I+LD+ L + G++ Sbjct: 4 KILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVNGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + L + P+ +L+ + I DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 64 VCKTL-TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I G LS+ D +TV + G +HLT KE+ ++ LL+ ++ L Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +D+ + ++R+K+ +I+TV+G GY +R+ Sbjct: 183 KIWGYDYYGDTRTVDMHVQRIRRKIDTQPN--KFIQTVFGIGYKMRK 227 >gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + L L+ E F++ G+ + + ++ D I+D+ + +I G+E+ Sbjct: 5 ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R P+ ILS + DK+ GL GADD+ISKPF+ E++ARI+A +RR+ Sbjct: 65 IKIVRKEYKM-PIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 DL ++ + ++ +GH I L+ EY++++L TK+ Sbjct: 124 NTDSLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + I V I +LR+K+ + Y++T+ G GY + + Sbjct: 184 ENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEE 234 >gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +++ L+ E + V + GE IE E+ I+LD+ + + G EV Sbjct: 9 VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + +TP+ +L+ ++V+G + GADDYI KPF+ E+V R++AI+RRS+ Sbjct: 69 CAEIR-ERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 127 Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + V L ++ DA V +G ++LT KEY+++ L+ + +E Sbjct: 128 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 188 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFE 236 >gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRSRSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++++ V V G I L KE+ ++E L LT+ ++ Sbjct: 123 DDVGVADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227 >gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 240 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G + + +DA+ILDL L + G E Sbjct: 6 KILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ ELVAR++A+ RR Sbjct: 66 ICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQEA 125 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ + L ++ A+ V + G I LT +E+ ++ + ++ L Sbjct: 126 MGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHPGEVFSRLTLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++ + E ++ I +LR K+ I TVWG+GY N + Sbjct: 186 DRVWGYQHEGYEHTVNTHINRLRIKIERNPAEPEIILTVWGKGYKFATNKPE 237 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD I+LD+ + ++ G E Sbjct: 4 KILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACLKIREEQTI-PIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKK 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++N D + V V+ + LT KE+ ++ELL+ K L+ E Sbjct: 123 YNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228 >gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440] gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440] Length = 229 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+SE F GE + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R++R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VARSIRGESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L+ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 123 AAPELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 233 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G++ + + + D +ILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++R Sbjct: 63 VARTIR-KTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + S IV GDL + D + +G + LT +E++++ L+ +T+E Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232 >gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] Length = 233 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD +A + L L+ E F V G G+E + ++ ++LD+ L + G+ Sbjct: 4 KVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMDGWT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ EDKV GL+SGADDYI KPF +E++ARI A++RR+ Sbjct: 64 VLKKIREESAT-PVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQ 122 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L +NLD+ + V G R+ KE +++ L+ N T+ L+ + Sbjct: 123 EEEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I +LR+KL + ++TVWG GY Sbjct: 183 WGFDYFGDSRTVDVHIKRLREKLEGV-SDQWRLKTVWGVGYKFE 225 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ ++L L E + V GE G++L + + D +++D+ L + G E Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ ILS + DKV GLQ GADDY+ KPF +EL+ARI A++RR R Sbjct: 64 VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRS 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G++ ++LDA+ V G + LT +E+ ++ + ++E + Sbjct: 124 RGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ R + +D F+ +LR + + A ++ETV G GY Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRF 228 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + G + +++ DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKP 123 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++ + V RI LT E+ ++E+L LT+ L + Sbjct: 124 EDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V++ LR+K G I TV G GYVLRE Sbjct: 184 WGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 227 >gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 14/241 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L F V G + D ++LDL L + G E Sbjct: 9 RVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLPGMDGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR PV +L+ ED++ GL+ GADDY++KPF+ ELV R+ +++RR R Sbjct: 69 VCRALRGR-GPVPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRT 127 Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++++ A+ G + LT +E+ ++ L T+ Sbjct: 128 GPQVPGSSAPAPGGVAHRAGITLDALARRATRDGRELALTVREFDLLSFLLRHPGVAFTR 187 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDET 229 E + ++ ++ + V + +LR K+ + I+TVWG GY A DE Sbjct: 188 EELMREVWGWDF-GDLSTVTVHVRRLRGKVEDDPAAPRLIQTVWGIGYRFDAPPEADDEG 246 Query: 230 C 230 Sbjct: 247 P 247 >gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 243 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + L E F V V + G+ + D I+LDL + G Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV I +LRK + A YI+TVWG GYV + Sbjct: 190 LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 128/227 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD +A ++ L +N+ V V + G+ +L + YE+D I+LD+ L + G Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + P+ +L+G S DK GL +GADDY+ KP ++EELVAR+RA++RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q ++ G L ++ + V Q ++ LT KEY ++ELL + M L+HL+ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D P + I LR KL A + +ETV+G GY L+ D Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227 Score = 65.8 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD ++ +L + V D G+ I D I+LDL + + G+E Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LRALRVA 69 + L+ Sbjct: 1136 MAGLKKC 1142 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++DD ++++L + + E + D +ILD+ + + G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 E+ + +R P+ L+ S+ E + GADD++SKP Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPI 486 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD LA + + + ++ G + I L + D +ILDL L + GF Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKP 102 V+ L+ PV + S + + L+ G ++ +K Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKG 1307 >gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 243 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L ++V GE+ +E+ + E D ++LD+ + + G+ Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234 >gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC 7002] gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC 7002] Length = 242 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L + V GE+ + + D ++LD+ + + G+ Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGGTGIPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234 >gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 240 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L+ E + V GE+ + + + D ++LD L + G E+ Sbjct: 14 VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R +R + P+ +L+ DK+RGL +GADDY++KPF+ EL+AR+RA+ R Sbjct: 74 CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRAQ 133 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I GD+S++L + V G IHL E+++++ T ++E L+ ++ Sbjct: 134 PVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLDAVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 E + +DV I +LRK L+ + I TV GY L E+A Sbjct: 194 GPDIYVEPRTVDVHIRRLRKALNCDT-EADIIRTVRAAGYALDNEDA 239 >gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 225 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 134/227 (59%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L G+E Sbjct: 4 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+++R ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 64 ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V GDL ++ K G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSF 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE ++ I LRKK+ + + I TV G GYV A+DE Sbjct: 184 DDEVFSDVLRSHIKNLRKKV-DKGFKRKIIHTVRGIGYV----ARDE 225 >gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L+ + V+ GE+ +E D I+LD+ L + GF V Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKMDGFAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ L+ + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 66 CRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPS 124 Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G+L V+ + + V G RI LT E+ ++ELL + + Sbjct: 125 ITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPR 184 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 185 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 225 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 134/226 (59%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG + E+DA++LDLGL +I G Sbjct: 1 MRILIVEDEPTLGRQLKSTLEQNGYAVDLSTDGEDGHFMGSTEEYDAVVLDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RRS Sbjct: 61 TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + ++ GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNSSAELIAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL + I T+ G GY L + A+ Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLG-----PDVITTIRGLGYSLNDPAQ 221 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + I L + V G G+E ++D I+LD+ L ++ G Sbjct: 1 MRILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV +L+ + +++D+V+GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ + V+ I L+ +E+ ++E L N L++ H++ Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + K+IDV+I LR+K+ I TV G GY +R Sbjct: 181 FDFYGDYKVIDVYIGYLRRKIDRHGASS-MIHTVRGVGYSMR 221 >gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIRKDSNV-PVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V +++ ++ V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G +ETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226 >gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++ I+ L ++ + V G + +E +FD + LD+ + + GF+ Sbjct: 22 RILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVMMPFVDGFD 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ I++ +D V+G + GAD+YI+KPF E VAR+ AI+RR Sbjct: 82 ACERIRAKSDV-PIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDM 140 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ GDL ++ A V V+G + LT E++++ L+ T+E+ Sbjct: 141 QKARTAPPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFRE 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E ++DV + +LR+K+ I TV G GY L Sbjct: 201 VWGYEYIGETNLVDVCVRRLREKVEVEPSKPKIIVTVRGVGYKLE 245 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 132/238 (55%), Gaps = 6/238 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E + V G + L + + DA++LD+ L D+ G E Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 279 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++L V GDL+++ +++ V+ G +HLT E++++ L+K L+ Sbjct: 280 TTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILDR 339 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +++ + ++++++ LRKK+ AG I T+ G GYVLR T Sbjct: 340 VWNYDFGGQANVVELYVSYLRKKI--DAGRPPMIHTMRGAGYVLRPADPALAPRTSAT 395 >gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+++ + ++ ML+ E F V+ G +G+EL + D ++LDL L + G +V Sbjct: 5 LLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLSGTDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR G Sbjct: 65 CRRLR-ERSNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDGG 123 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 T G + +++D V V+G +HL +E++++E+L LT++ ++ + Sbjct: 124 GDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDRI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + G + K +DV + +LR ++ + ++ TV G GY Sbjct: 184 WGGDYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGYKFEP 228 >gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I ++ED+ LA IE L + + G + + + D I+LD+ L D GFE Sbjct: 4 KIAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVMLPDADGFE 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R + TPV L+ S D+V GL+ G DDY++KPF+ EL+AR++A R Sbjct: 64 LCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLRRE 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G ++ A+ V + G I LT E+ ++E +++ L + Sbjct: 124 EMDAEPGAVGIGPFRLDRTARRVYLNGREISLTSTEFNLLEYFLTHPGRAYSRDQLLEAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LR+++ Y+ TV G GY E Sbjct: 184 WGEQRYVTPRTVDVHVRRLREQIEEQPDAPRYLTTVRGFGYRFEE 228 >gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 229 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A I LK E +++ + GE ++ + +D +ILDL L I G E Sbjct: 4 KILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLMLPGIQGLE 63 Query: 62 VLRALRVAKISTPV--CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R I++ S DK+ GL++GADDYI+KPF+ EL+AR++A++RR+ Sbjct: 64 ICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMRRT 123 Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I DL ++ + V V+G L+ E++++ L+ R N +++ L+ Sbjct: 124 LPAVSNNQIIKIKDLIIDKEKYLVTVKGQPKRLSATEFKLLLYLAERPNKIFSRDHLLDA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR K+ + YI+T+ G GY + Sbjct: 184 VWGQDIYVDPRTVDVHIRRLRLKIEDYPDNPEYIKTLRGIGYYIE 228 >gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 227 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + + +L+ E ++V V + G DG+ D ++LDL L + G + Sbjct: 3 RILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLSGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR + S PV +L+ S DKV GL+ GADDY++KP++ EL+AR++A++RR Sbjct: 63 VCRALR-QRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G + ++++ TV V G L KE++++E+L LT+ ++ + Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ +I TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGYKFE 225 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ +L + I+LDL L ++ G +V Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMDGIQV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 68 ATKLR-EHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243 >gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] Length = 241 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F + G++ +L ++ I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ATQLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTT 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY N DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 132/230 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ A+++ +L ++N+ V V G EL + Y++D I+LD+ L + G Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+G S +K GL +GADDY+ KPF++EELVAR+RA++RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ ++ G+L ++ + V + + LT KEY ++EL + M L H++ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D P + + I LR KL NA + +ETV+G GY L+ +++ Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGS 230 Score = 77.3 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD + ++ +L+ + V G++ I D I+LDL + + G+E Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 + L+ + + + I+ S D+ISKP + Sbjct: 1441 MAMLKESTETKHIPIVICSVYKPTTNNQPSSDFVDWISKPVQESY 1485 Score = 68.5 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L ++DD + ++ +L V D E + D +ILD+ + G E Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + +R + P+ L+ E + GADD++SKP Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPI 485 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD LA + + + + G + I L + D +ILDL L + GF Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 V+ + PV + S E + + L+ G ++++K Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKG 1604 >gi|308173799|ref|YP_003920504.1| yvrH [Bacillus amyloliquefaciens DSM 7] gi|307606663|emb|CBI43034.1| yvrH [Bacillus amyloliquefaciens DSM 7] Length = 235 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D++ + I+ +L E + V DG+ D +ILD+ L D G+ Sbjct: 7 KVLIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIMLPDGEGY 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS DK+ GL G DDYI+KPF+ +++ R++A +RRS Sbjct: 67 DICKQIR-DISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKKVAYRVKAQLRRSS 125 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S T G ++ + G I LT KE ++ N ++KE Sbjct: 126 YLQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I +LR+K+ +++ TV G GY Sbjct: 186 AVWGEDFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKFV 231 >gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 111/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 +IL+++D+ + + LK E + + G +++ + D +ILD+ L + G+ Sbjct: 5 KILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPEYDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ D++ G GAD+YI+KPF+ LVAR+ A++RR+ Sbjct: 65 TVCREIRKKSST-PIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLRRAV 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L ++ +A V + I L+ KEY ++ L+ +++E L+ ++ Sbjct: 124 PVDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR KL NY++TV G GY Sbjct: 184 YDYYGDLRTVDTHINRLRIKLD---SKSNYVQTVRGYGYRFE 222 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + G + +++ DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 64 VCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKP 123 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++ + V RI LT E+ ++E+L LT+ L + Sbjct: 124 EDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V++ LR+K G I TV G GYVLRE Sbjct: 184 WGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 227 >gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM 13528] gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ ++S + V + G+ + Y+ D ++LD+ L +I G + Sbjct: 7 KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV GL+ GADDYI KPF +E++ARI+A++RR Sbjct: 67 VLKWIRKEYET-PVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L++++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + + +DV + +LR+KL GG N+ IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGYKFE 226 >gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 220 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + ++L L E ++V + GE I+L FD +ILD+ L G+ Sbjct: 3 KILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR ++ S PV ILS ED++ G + G D+YI+KPFN + L+ARI+ +++ + Sbjct: 63 VLREIK-KYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKNTSN 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I G +++N + TV V+G + L KEY+++ L L+++ L ++ Sbjct: 122 NTDHIIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ID I LRKKL + I+TV G GY Sbjct: 182 DFPGSDRTIDTHIKNLRKKLGD-----ECIKTVRGIGYKFE 217 >gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 225 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++LK+E F +V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA +RR+ Sbjct: 64 VCRVLRSDSGV-PIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ G + +++ A V G I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGYK 221 >gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 248 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L+ + V+ GE+ +E D I+LD+ L + GF V Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKMDGFAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ L+ + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 66 CRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPS 124 Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G+L V+ + + V G RI LT E+ ++ELL + + Sbjct: 125 ITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPR 184 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 185 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 232 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD + IE L+ ++++V GE+ + L +FD I+LDL L I G + Sbjct: 4 RILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKINGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR R PV I+S S DK GL GADDYISKPF+ EL AR++A +RR+ Sbjct: 64 LLRHFR-ESSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +I DL ++L + +V+V+GH + LT KE+ +++LL + TKE Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ +I+V I +LR+K+ YI T+WG GY + + Sbjct: 183 IYQFIWEDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGYKMGD 232 >gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +++ L+ E + V + GE IE E+ I+LD+ + + G EV Sbjct: 7 VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + +TP+ +L+ ++V+G + GADDYI KPF+ E+V R++AI+RRS+ Sbjct: 67 CAEIR-ERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 125 Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + V L ++ DA V +G ++LT KEY+++ L+ + +E Sbjct: 126 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFE 234 >gi|114569220|ref|YP_755900.1| transcription regulator CtrA [Maricaulis maris MCS10] gi|114339682|gb|ABI64962.1| cell cycle transcriptional regulator CtrA / two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 231 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 159/230 (69%), Positives = 199/230 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A + SIELMLKSE FN+Y TDLGE+G++L K Y++D I+LDL L D+PGF Sbjct: 1 MRVLLIEDDRATSQSIELMLKSEGFNIYTTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TP+ IL+G + I++KVRGL GADDY++KPF+K+E+VARI AIVRRS+ Sbjct: 61 DVLKTLRVAKVDTPILILTGNADIDNKVRGLGCGADDYMTKPFHKDEMVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG + VNLDAKTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGSIGVNLDAKTVEVEGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A G+++IETVWGRGYVLR+ +++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATHGEHHIETVWGRGYVLRDPVEEKAS 230 >gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 224 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++DD + + + ++E+ E+ + + D I+LD+ L D G Sbjct: 1 MKVLIVDDDLDILNIVRTACENESMQTSTAANAEELWSSLRSEKPDVILLDIMLPDANGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R P+ L+ S D + GL+ GADDY++KPFN LVARI+A++RR+ Sbjct: 61 DLVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRTE 120 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GD VNL + TV G LT +E+++++LL+ T+E L+ + Sbjct: 121 ISGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I KLR+K+ +I+TV G GY Sbjct: 181 WGMDFFGDFRTVDVHISKLREKVGE-----GFIKTVRGVGYKFV 219 >gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44] gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44] Length = 243 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F + + + G+ + D I+LDL + G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVFVPDG 241 >gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621] gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 232 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I++ L +E + + G + +EL K IILD+ + + G E Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIMMPKMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS S DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 65 ACMKIREEKSM-PIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S D+++N+ V++ + LT +E+ ++ELL+ + + E Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I KLR+K+ YI+TVWG GY + + Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 247 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + PV +L+ +S +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + G + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + ++ E Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVPQSGEGAT 242 Query: 235 TA 236 T+ Sbjct: 243 TS 244 >gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + I + L++E + + + +++ + D IILD+ L + G E Sbjct: 6 KILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIMLPKMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ LS DK++GL SGA+DYI+KPFN EL+ARI++ +RR R Sbjct: 66 ACLKIR-EQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q + G L V+ + + V ++ + LT KE+ ++ LL K + E Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ + V I K+R+K+ Y++TVWG GY Sbjct: 185 MVWEDLFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium thermophilum] Length = 242 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSEN-FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ I++IEDD +A SI L+ E F+V +T GE G+ + + I+LD+ L + Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 PGFEVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 GFE+ R LR P+ +L+ + DK+ GL GADDYI+KPF+ EL+ARI A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +RR+ G S+ G L ++ + V QG I+LT KE+ +++LL+ K LT+E L Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++ + E + +DV I ++R+KL YIET G GY E K T Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAGKQAT 230 >gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 R+L++ED++ + I + LK F V + GE+ + + + + D ++LD+ L I G+ Sbjct: 3 RVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGIDGY 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R S V +L+ S DKV GL GADDYI KPF+ EL+ARI AI+RR Sbjct: 63 KVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRRIN 122 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G ++L++K + I LT E+ +IEL + L++ L+ Sbjct: 123 NVNNIENKKILTSGIFKLDLESKRFFKEDKEIELTQTEFLLIELFLKNEGKVLSRNEILD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++K++DV + ++R+K+ N + YI TV G GY ++ Sbjct: 183 SVWGSDYFGDIKVVDVNMRRVRQKVENDSSSPEYINTVRGFGYKWGKD 230 >gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] Length = 227 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ + ++ L+ E F V + GE G+EL Y +ILD+ L I GFE Sbjct: 3 KILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + +L+ + D++ GL+SG DDY+SKPFN EL+ RI++++RR Sbjct: 63 VCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLDS 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S ++L +K+ G I LT E +I + ++ LN + Sbjct: 123 IQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMTW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E ++KI+DV I +LR K+ + + YIETVWG GY N Sbjct: 183 GEEFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYRWNSN 227 >gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 792 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 126/226 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A +++ +L N+ V + G+ EL + +E+D I+ D+ L + G Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+G S D+ GL +GADDY+ KPF+ EEL AR+RA++RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L ++ A V+ Q + LT KEY ++EL+ + M L H++ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D P + + I LR+KL + + IETV+G GY L+ A+ Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226 Score = 61.5 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++++DD + ++ + K V D E D ++LD+ + +I G + Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + R +R P+ L+ + + + SGADD+ISKP Sbjct: 549 LCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPI 592 >gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 233 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RR+ Sbjct: 63 VARTIR-KTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ IV GDL + DA V+ G + LT +E++++ L+ +T+E Sbjct: 122 TIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232 >gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 231 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD + + + L+ E V GE+G+ +D ++LDL L G EV Sbjct: 11 VLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGLEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 R +R +TPV +++ + D + GL++GADDY++KPF EEL ARIRA R Sbjct: 71 CREIR-RVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + IV GDL + V G + LT E+ ++ L+ + ++E L ++ Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWGY 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++DV + +LRKK+ + TV G GY L Sbjct: 190 DYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRL 229 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L + V + G + +E+ DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKP 123 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DLS++ + V RI LT E+ ++E+L LT+ L Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 229 >gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC 19977] gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus] Length = 228 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +LA + +L+ E F + + G + + D ++LDL L + G +V Sbjct: 4 VLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRAKSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G + +++D TV V G I L KE+ ++E L LT+ ++ Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + Y D I+LD+ + + G Sbjct: 6 RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A + P+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 66 AARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ DL ++L + V R+ LT E+ ++EL LT+E Sbjct: 126 ASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + AAG + TV G GY LR + Sbjct: 186 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYALRTGGPE 237 >gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] Length = 234 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+AR+RA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDVPAE 234 >gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L++E V G D + + D ++LD+ L + G E Sbjct: 4 RVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL+SGADDY+ KPF +EL+AR+RA +RR Sbjct: 64 VCRRIRAESGV-PIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G + LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGYK 221 >gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 229 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+SE F GE + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VARAIRGESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 123 VAPEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 238 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 119/231 (51%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + L L+ E F++ G+ + + ++ D I+D+ + +I G+E+ Sbjct: 5 ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R P+ ILS + DK+ GL GADD+ISKPF+ E++ARI+A +RR+ Sbjct: 65 IKIVRKEYKM-PIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 DL ++ + ++ +GH I L+ EY++++L TK+ Sbjct: 124 NTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + I V I +LR+K+ + Y++T+ G GY + + Sbjct: 184 ENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEE 234 >gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 229 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+SE F GE + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VARAIRGESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L+ G +S+++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 123 VAPELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 225 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +A I LK + V + G+ G E+D IILD+ L I G Sbjct: 1 MRILLVEDEPGIAQFISQGLKETGYVVDIAPDGQQGKNYVDAVEYDIIILDIMLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R K+S P+ +L+ S+ED+V+GL GADDY+ KPF EL+ARIRA+ RR Sbjct: 61 KLLGEIRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL+++L + V+ I L+ E++++E L N LT+ +++ Sbjct: 121 LQFNTVLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DV++ LR+K+ + TV G GY ++ Sbjct: 181 LDFYSNSNVVDVYVGYLRRKIDRGFQRP-LLHTVRGVGYCMKAEG 224 >gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 225 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ F++ + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I +LR K+ + A I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFSVKLIHTVRGVGYVLEP 221 >gi|323137579|ref|ZP_08072656.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397205|gb|EFX99729.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 233 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 172/228 (75%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIATGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE + + Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPNEAD 228 >gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 243 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ +++ L E + V G D + + Y D I+LD+ + + G Sbjct: 10 RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ DL ++L+ + V R+ LT E+ ++E+ LT+E Sbjct: 130 AAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GY LR D Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242 >gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +++ L++E F V + GE+G+ L +++D I+LD+ L + G+ Sbjct: 1 MRVLVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPRLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A TP+ +L+ D+ L +GADD++SKPF+ LVAR+RA+VRR+ Sbjct: 61 RVCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL+++ +T G + LT +E+ ++E L+ ++K L ++D Sbjct: 121 RRLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++V I LR+K+ +A + + TV G GY L + Sbjct: 181 AAFDGDPNIVEVHISALRRKI-DAPFARTSVGTVRGAGYRLAADG 224 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E + V G + + + D ++LD+ L + GF+ Sbjct: 4 RILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R Sbjct: 64 VCRAIR-RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DLS+++ V+ +G I LT E+ ++ L+ ++E L ++ Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222 >gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 237 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G +G +L + D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL + + V V + LT KE++++ L++ ++ Sbjct: 123 VPIQAEESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR+KL +I TVWG GY N +ET Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|84516173|ref|ZP_01003533.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis SKA53] gi|84509869|gb|EAQ06326.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis SKA53] Length = 237 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 156/234 (66%), Positives = 186/234 (79%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDL L DI G Sbjct: 1 MRVLLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLNLPDINGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ IL+G E K++ GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIDTPILILTGDDGTESKLKSFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTVEV G+ +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIRTGQIAVNLDAKTVEVAGNTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 G DEPE+KIIDVFICKLRKKLS AA G+N IETVWGRGYVLR+ + L Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEAADGENNIETVWGRGYVLRDPESVKPAAKLA 234 >gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD+ + L LK ++ V+ G +GI + + ++LD+ L + G+E Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ P+ LS I DKV+GL +GADDY++KPF+ EL ARI+A +RRS+ Sbjct: 64 ICQKIRM-LSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKM 122 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +A G+L ++LD+ V +G+++ L KE Q++ LL KN + E + Sbjct: 123 NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ ++K + V I LR+K+ I+TV G GY +D Sbjct: 183 QIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTADED 233 >gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 14/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E + + GE+ +++ ++ + I+LDL L + G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELRSSSQV-PIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSLIVTGDLSV-----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q G NL +V GH I + KE +++ L+ N T Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L+H++ + + +DV I +LR+K+ + K + TVWG GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--EKWALTTVWGIGYKFE 234 >gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A I + L+ E ++V GE+ + + + D +ILD+ + I Sbjct: 1 MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R+ P+ LS +S DKV GL GADDY++KPF+ ELVAR+ A +R Sbjct: 61 DGYEVARQIRIKHNM-PIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLR 119 Query: 118 RSRGHAQSLIVTGDLS-------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + +NLD + V V G +I LT KE+ ++ LL+ + Sbjct: 120 RFLTLNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ G + V I LRKK+ I+TVWG GY Sbjct: 180 VEHIFQQVWTGDYYDGGSTVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTF 230 >gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] Length = 249 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED + + I L +E+++V G++ ++ + E+DA+ILD+ + + G + Sbjct: 21 RILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGLQ 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR K PV +L+ M SIED+V GL +GADDY+ KPF EEL+AR+R ++R+ Sbjct: 81 VLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKPAA 140 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL V++D + V G I L+GKE+ ++ + L++E H+++ Sbjct: 141 VKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIWNY 200 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +IDV+I LRKK+ + K I TV G GYVL++ Sbjct: 201 DYTGSSNVIDVYIRYLRKKI-DDGYEKKLIHTVRGAGYVLKD 241 >gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 241 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ +L + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240 >gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 234 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIR-KTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEV---------QGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A +L + +E+ G + LT +E++++ L+ +T+E Sbjct: 122 VAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 234 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+AR+RA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + A+ Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDVPAE 234 >gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA ++L L E + V V + G G+ + E D ++LD + + G E Sbjct: 7 RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ IED+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 67 VCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQP 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DLS+N + V I LT KE+ +++ L LT++ L ++ Sbjct: 127 EDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + II+V+I LR KL A I+TV G GYV+R Sbjct: 187 DFMGDSNIIEVYIRYLRLKLE-AENESRLIQTVRGVGYVMR 226 >gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 231 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 122/231 (52%), Gaps = 7/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + I+ ++ + + + + G+ +ELC+ D +ILDL L D+ G Sbjct: 1 MKILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGL 60 Query: 61 EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++ R +R + P+ +++ + D V GL+ GADDY++KPF+ + L+ARI++++RR Sbjct: 61 DICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRR 120 Query: 119 SRGHAQSLIVTGDL----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S ++ V G + L+ E+ ++E L+ K +++ Sbjct: 121 KGEAFRSNSDEDIKIRSLVISPLKHKVTQNGKEVELSATEFSILEFLARHKGQVFSRQQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLREN 224 +N + + IDV I +RKK+ ++ N +IET+ G GY + E Sbjct: 181 INAVKGSSYPVTDRSIDVQILGIRKKIGDSPESSNPFIETLRGVGYRICEE 231 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A ++L + E + V VT G G++ ++D ++LD+ L I GFE Sbjct: 4 KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ ++DKV GL GADDY++KPF+ EEL AR+RA +R+ + Sbjct: 64 VLKKIR-EHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + D+ ++L V G +I LT KE+ ++E L N LT+E L ++ Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + I+DV+I LR K+ + + I T+ G GY L+E+ ++ Sbjct: 183 YDYYGDTNIVDVYIRYLRSKI-DDPFDRKLIHTIRGVGYTLKEDKDED 229 >gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein [Zunongwangia profunda SM-A87] gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family protein [Zunongwangia profunda SM-A87] Length = 222 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ ++ L+ E+F V + D G+ G+EL ++D ++LD L + G Sbjct: 1 MRILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R R TPV L+ ++++ + GLQSGA+DYI KPF+ EEL+ RI+ +R + Sbjct: 61 EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRP-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + +N G ++LT KE+ ++E L K T+ + ++D Sbjct: 120 SGEHAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LR+KL +NYI+TV G GY+ +E+ Sbjct: 180 INFSYNTGVIDVYINALRRKLDLD-QDENYIQTVRGVGYIAKES 222 >gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++L+ E F V G + ++ + + D I+LD+ L + G + Sbjct: 7 KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCKAIR-ETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 125 Query: 122 HAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + +++ V G I LT E+ ++ L+ R ++E L ++ Sbjct: 126 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ I+TV G GY Sbjct: 186 YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 225 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D+ + + + L + + + G++ + + +D +ILD+ + ++ G Sbjct: 5 KVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEMDGIA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ L+ ++V GL++GADDY+ KPF+ EL+AR+ A++RR Sbjct: 65 VCKEIR-KTSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTK 123 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q G + +N ++ E G I LT KE+ ++ L ++E L ++ Sbjct: 124 QGQQEELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + N I+TVWG GY Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NCIQTVWGVGYKFE 222 >gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++DD A+ I+ LK EN + GE+ L + FD +ILD+ L D GF+ Sbjct: 5 KVLLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQIFDLVILDVSLGDTDGFQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R P+ LSG DK+ L GADDYI+KPF+ LVA+I+A +RR Sbjct: 65 VLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGDK 124 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I+ G +N + + + L+ KE +++ N +K+ Sbjct: 125 IKEHQTSLKKIIQGPFILNTETFQLFKNEKEVFLSSKEIMLMKFFMENPNIVFSKDQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + I V++ LRKKL + + +TVWG GY Sbjct: 185 KVWN-NSIVDDNTIMVYMRHLRKKLEDDPKNPKFFQTVWGIGYKF 228 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L L +E + V V G +G+ +D I+LD+ L + G+ Sbjct: 1 MRLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A TP+ +L+ D+ GL +GADDY++KPF+ L AR++A++RR Sbjct: 61 RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L ++ A+ V + G I LT KEY ++E L LR ++K L H++D Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++V++ LR+KL I TV G GY+L Sbjct: 181 FAYSGDPNIVEVYVSTLRRKLGA-----GLIRTVRGAGYLLE 217 >gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125] gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D++ + I + L+ E ++V G++ +++ D +ILD+ + +I G+EV Sbjct: 6 ILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIMMPNIDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ LS +S DKV+GL GADDY++KPF ELVAR+ A +RR + Sbjct: 66 ARQIR-EQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKKL 124 Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q G L + + + V + G I LT KE++++ LL+ + E + Sbjct: 125 NQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEILYLLASHPKKVYSVENIFH 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + LRKKL + +I+TVWG GY Sbjct: 185 QVWGEAYFEGGNTVMVHVRTLRKKLKDDQRKSKWIKTVWGVGYAF 229 >gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649] gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + + +L+ E + V V + G D + D ++LDL L + G + Sbjct: 3 RILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLPGLSGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR + + PV +L+ S DKV GL+ GADDY++KP++ EL+ARI+A++RR Sbjct: 63 VCRALR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRRLSE 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + ++++ V V G L KE++++E+L LT+ ++ + Sbjct: 122 PEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ +I TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPAAPKHIVTVRGLGYKFE 225 >gi|328553275|gb|AEB23767.1| yvrH [Bacillus amyloliquefaciens TA208] gi|328911939|gb|AEB63535.1| Transcriptional regulatory protein yvrH [Bacillus amyloliquefaciens LL3] Length = 235 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D++ + I+ +L E + V DG+ D +ILD+ L D G+ Sbjct: 7 KVLIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIMLPDGEGY 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS DK+ GL G DDYI+KPF+ +E+ R++A +RRS Sbjct: 67 DICKQIR-DISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSS 125 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S T G ++ + G I LT KE ++ N ++KE Sbjct: 126 YLQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I +LR+K+ +++ TV G GY Sbjct: 186 AVWGEDFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKFV 231 >gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ L E F V V G DG+ + +D I+LD+ L + G+ Sbjct: 1 MRVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A+ TP+ +L+ + D+ L +GADD++SKPF+ L+AR+RA++RR Sbjct: 61 TVCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL+V+ I LT KE+ ++ L+ R ++K L +D Sbjct: 121 RARPVSITVGDLTVDPAGLRCRRGEVEIALTPKEFAVLHGLARRPGEVVSKSELLAQAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++V+I LR+K+ ++ G++ + TV G GY L Sbjct: 181 FSYDGDPNIVEVYISALRRKI-DSPFGRSSLVTVRGAGYRLE 221 >gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD +ILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + V GE+ ++ + + ++LD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R P+ +L+ +D++ G + G D+YISKPF+ + LVAR+ AI+RR+ Sbjct: 65 EVVKEIR-KVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTV 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G + +++ V + G I+L+ KE+++++ + LT+E LN +++ Sbjct: 124 QTEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR KL YI T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS---YIHTIWGMGYKFE 222 >gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX] gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX] Length = 241 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+I+D+ + ++ L+ F V GE+G+ L + D I+LD+ L DI GF+ Sbjct: 11 HVLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFD 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV L+ + D V GL G DDY++KPF+ E L+AR+RA++RR + Sbjct: 71 VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + DL ++ TV G I L+ E++++ + LT+ L Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ + +I++ ++ LR+KL G N I T G GY LR D Sbjct: 191 ENVWGWDYAGQSQIVETYVSYLRRKL--DPFGPNLIHTQRGVGYALRVKEDD 240 >gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 236 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + G + I + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEVR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S I GDL + DA + +G I LT +E++++ L+ +T Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A +++ L++E F V + GEDG+ L + ++D ++LD+ L + G+ Sbjct: 1 MRVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR + P+ +LS D GL GADDY++KPF+ LVAR+RA++RR Sbjct: 61 NVCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDLS++ + V + LT +E+ ++E L R + ++K L H++D Sbjct: 121 NRRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V++ LR+K+ + + ++TV G GY L + Sbjct: 181 T-FDTDPNVVEVYVGYLRRKI-DVPFSRTALQTVRGAGYRLAGDG 223 >gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I++ L +E + G + +EL K IILD+ + + G E Sbjct: 5 KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +R K P+ +LS S DK+ GL +GADDYI+KPFN EL+AR+++ +RR Sbjct: 65 ACMKIREEKSM-PIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ D+++N+ V++ + LT +E+ ++ELL+ + + E Sbjct: 124 LNNSNGNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I KLR+K+ YI+TVWG GY + + Sbjct: 184 KIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 234 >gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 237 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D++++ + L+ + + V G + + + FD ++LD+ L + G E Sbjct: 7 RILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDYI+KPF+ E +R++A +RRS Sbjct: 67 VCRRLRSRSSV-PIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRRSEL 125 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G +L ++ D +TV ++G I T E++++ L+ T++M L Sbjct: 126 SRSAERDGGSLDVHELRIDPDKRTVSLRGEAITTTFVEFEILLTLARSPGRVFTRDMLLA 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + IDV I LR+K+ A Y+ TV G GY R+ Sbjct: 186 RVWGDSAYRDPRTIDVHIRHLREKIERDAKEPEYLFTVRGVGYRFRD 232 >gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ++ ++ L L E+F+V GEDG++L + D ++LDL L I G Sbjct: 6 RVLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLMLPGIDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ + D + GL++GADDY++KP EL ARIRA++RR+ Sbjct: 66 VCRRVR-EHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTAS 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L + D + V G +HLT E++++ L+ + +T+E L ++ Sbjct: 125 ARPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWGH 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++DV I +LR+K+ + + TV G GY + Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGYRIAPE 227 >gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 232 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+K +A +IE L ++ + V + G + +E+ + D I+D+ + + G Sbjct: 5 HILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVMMPKMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR PV +LS S D++ GL GADDY++KPF EL+AR+ + +RR + Sbjct: 65 FTMKLR-EHHHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYKR 123 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++I G L +N + K V G+ + LT EY+++ LL E Sbjct: 124 FSNLLNEESSNVITIGGLELNTETKEFTVDGNAVKLTPIEYKILNLLMKHPGRVFPTEEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ I V I +R+K+ Y++ VWG GY L + Sbjct: 184 YERIWN-ETAINTDTIMVHIRNIREKIEINPKNPKYLKVVWGVGYKLEKQ 232 >gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510] gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A + LK V V + G++G+ L +D +I+D L G Sbjct: 1 MKILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TPV LS + S++D+V+GL++G DDY++KPF EL+ARI +VRR Sbjct: 61 SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRRRG 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GDL ++L +++V+ G I L +E+ ++E L + +T+ M L +++ Sbjct: 121 AAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR+K+ I TV G GY LR Sbjct: 181 DYHFDPQTNVIDVHIARLRQKIDKDFPTP-LIHTVRGAGYSLR 222 >gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 121/223 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ +A ++ L +++ V + GE G EL + + +D ++LD+ L + G Sbjct: 1 MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R + PV +L+ + +KV GL +GADDY+ KP EE+ ARIRA++RR Sbjct: 61 AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ DL +N + V Q I LT KEY ++EL K ++ L HL+ Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + I LR KL A + I+TV+G GY L++ Sbjct: 181 YEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQ 223 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240 >gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+ ++ +I L +++ V V G++ EL + +D I+LD+ L + G Sbjct: 1 MKILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +++ ++ED+V GL GADDY+ KPF +EL AR+RA++RR Sbjct: 61 TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ + V Q I L+ KEY ++E ++ + L HL+ Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 PE + I LR+KL + IETV+G GY L+E + Sbjct: 181 FERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRLKERPE 226 >gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21] gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + G++ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGEVRLDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL I T+ G GY L + A+ Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGA-----EVITTIRGLGYSLDDPAE 221 >gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] Length = 224 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ LA I L + G+D + ++D IILD L + G Sbjct: 1 MKILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + + PV ILS +S ++ +V GL +GADDY++KPF EL+AR++ ++RR Sbjct: 61 TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ TG + ++L + V VQG I +E++++E L +++ M L ++ Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ ++DV I +LR+KL + + I TV G GYV Sbjct: 181 WDYHFDPQTNVVDVHISRLRQKL-DHGQETSVIRTVRGAGYVFE 223 >gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 227 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V + G+ G+++ E+D II+D + I G Sbjct: 1 MRLLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPAISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ L+ ++ED + GL +GA+DYI KPF EEL+ARIR +R + Sbjct: 61 EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRN-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L++N V + LT KE+ ++E L K+ T+ + H++D Sbjct: 120 NRNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +IDV+I LR+KL AAG N I+T+ G GY++RE Sbjct: 180 IHFDSDTSVIDVYITFLRRKLE-AAGCGNIIQTIRGVGYIVREPE 223 >gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 242 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 125/240 (52%), Gaps = 15/240 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ +E + Y D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ DKV GL+ GADDY++KPF+ ELVAR++A +R Sbjct: 64 VAREVR-QTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122 Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + I G+L + DA VE G +I LT +E++++ ++ + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +T+E L ++ +V+ +DV + +LR+K+ + + T G GY +++ ++ Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFIKQQTEE 242 >gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 231 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++++ +++ K NF V GE+G+ + D ++LD+ L I GF+ Sbjct: 4 KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR + +L+ DK++GL+ GADDY+ KPFN EL+ R ++++RR Sbjct: 64 VCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLGG 123 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + +G + L ++ V + I LT KE+ ++++ KN T++ L+ Sbjct: 124 KSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + KI+DV I +LR K+ + YIETVWG GY R+ Sbjct: 184 KIWGYDYVGDTKIVDVNIRRLRSKIEDKDSHGMYIETVWGIGYRWRKE 231 >gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IED++ ++ I+ L+ E +NV+ G++G++ + + D I+LDL + I G Sbjct: 4 INILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMIPKISGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R PV +++ S E+ + GL+ GADDY++KPF+ +EL+ RI+ ++RR Sbjct: 64 DLIKEIRNKSNV-PVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L+ G I LT E+Q+I+ L N T+E + Sbjct: 123 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + +YI+T++G GY Sbjct: 183 EITFGFDYDAYDRAIDTHIKNIRQKIEDNPKKPDYIKTIYGMGYK 227 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD + ++ L E F V GE G+ + D +ILD+ L + G E Sbjct: 4 RILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV +L+ +++VRGL+ GADDY++KPF+ + L AR+RA +RR Sbjct: 64 VLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRET 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +++ G+L+++ +V G I LT +E+++++ + +K + L+ + Sbjct: 124 DAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ ++ +LR+KL G I T+ G GYVLR+ Sbjct: 184 GYLGDPNVVETYVKQLRQKLEGD-GQTRLIHTIRGVGYVLRQ 224 >gi|226307885|ref|YP_002767845.1| two-component response regulator MprA [Rhodococcus erythropolis PR4] gi|229495087|ref|ZP_04388833.1| response regulator [Rhodococcus erythropolis SK121] gi|226187002|dbj|BAH35106.1| two-component response regulator MprA [Rhodococcus erythropolis PR4] gi|229318018|gb|EEN83893.1| response regulator [Rhodococcus erythropolis SK121] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V + G D +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYTVELAVDGLDALEKILANRPDAVVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSAGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRTA 120 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ DL+++ + V+ I LT E+ ++E+L LT+ L Sbjct: 121 PDLDADSEMMAFEDLTLDPVTREVKRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 225 >gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes] Length = 239 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G + + + + + D IILDL L ++ G E Sbjct: 6 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 66 VAKEIR-KTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 124 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 125 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 185 REHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 236 >gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394] gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782] gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394] gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782] Length = 236 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G + + + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36] gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36] Length = 224 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L ++ L FNV + D G DG+ ++D ++LD+ L + G+ Sbjct: 1 MKILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR+ PV +L+ + D+V+GL+ GADDY+SKPF+ EL+ARI +R Sbjct: 61 DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQLRDKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL N + V+ G I LT KE+ ++E L R+ L+K +H++D Sbjct: 121 STHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + II+V I +LR K+ I TV G GYVL Sbjct: 181 INFDSDTNIIEVAIKRLRNKIDQGFSSP-LIHTVRGMGYVLE 221 >gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRSRSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADA 122 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++++ V V G I L KE+ ++E L LT+ ++ Sbjct: 123 DDLGVADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227 >gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I L +++ V GE +E + D ++LD+ L D GF Sbjct: 5 KILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALECFDQFSPDLVVLDVNLPDTTGFI 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ + + + ++ DK++G GADDYI+KPF EL AR+RA R Sbjct: 65 LCQEMQSRTSVFILLL-TSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V GDL ++ + V + I L+ E+ ++ L+ + + L + Sbjct: 124 VADSEPRSLVYGDLLIDPSRREVYIDDKLIPLSALEFDLLYCLASKPGRAWRRSELLQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +D E E +++DV I ++RKK+ I+T+ G GY+ K+ Sbjct: 184 WDYDYEGEQRVVDVHIGQIRKKVEPDVNKPVLIKTIRGVGYMFDRRVKE 232 >gi|85702768|ref|ZP_01033872.1| DNA-binding response regulator CtrA [Roseovarius sp. 217] gi|85671696|gb|EAQ26553.1| DNA-binding response regulator CtrA [Roseovarius sp. 217] Length = 238 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 153/228 (67%), Positives = 185/228 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTSRSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+++TP+ ILSG + K+RG GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVATPILILSGAGDTDSKIRGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTV+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGMVNVNLDAKTVDAGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATDGANYIETVWGRGYVLRDPELGE 228 >gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E + V ++ GE+ ++ + +F+ I++D+ + + GFE Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ L+ S +DK++G SG DDYI+KPF+ EL R+ AI++R Sbjct: 64 AIKRIR-KLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I DL +NL T+ + + I LT KE+ ++ LL+ K Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KLS+ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD +ILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ D IILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIR-KTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A IV GDL + DA V+ + LT +E++++ L+ +T+E Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 232 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L+ + V G + + DA+I+D+ + + G Sbjct: 3 MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR P+ +L+ +++D+V GL +GADDY+ KPF +EL+AR+RA+ RRSR Sbjct: 63 EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + LS + ++ V RI LT E+ ++ + L + L Sbjct: 123 PEPEQDEAPEQLSFADLTLDPGSREVTRGNRRISLTRTEFALLAVFLQNPEKVLERSWLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++V+I LR+K + G I TV G GYVLRE Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEPRLIHTVRGVGYVLRE 229 >gi|296281989|ref|ZP_06859987.1| DNA-binding response regulator CtrA [Citromicrobium bathyomarinum JL354] Length = 231 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 156/227 (68%), Positives = 192/227 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ + A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPSTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG+S ++ KVR GADDY++KPF++EELVARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLS+A G+NYIETVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACDGENYIETVWGRGYVLRDPNEE 227 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 133/229 (58%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ + I L+ EN++V G++ ++ E+D +ILD+ L + GF Sbjct: 8 MRILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TPV L+ S++D+V+GL GADDY+ KPF+ EEL+ARIR I+R++ Sbjct: 68 EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNS 127 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ +L+V+ + TV RI L+ KE+ ++E + K ++K+ H Sbjct: 128 IKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQH 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +YD E +I+V I LRKK+ I T+ G GYVL+E + Sbjct: 188 IYDFDSEINSNVIEVHIRLLRKKIDTDF-TPKLIHTIRGVGYVLKEENE 235 >gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F + G + +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G + ++++ V V G + L KE+ ++E L LT+ ++ + Sbjct: 122 SEELLPQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKVEPDPATPRHLVTVRGLGYKFE 225 >gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 635 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 123/223 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD + + +I L + + V + GE G+EL + + +D I+LD+ L + Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDRI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + TP+ +L+ + D V GL++GADDY+ KPF+ EL+ARI+A+ RR + Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N V QG +HLT EY ++EL ++++ ++ ++ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P + I I LR+KL +N I+TV+G GY L E Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223 Score = 62.3 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++LI+DD ++ L FNV + + + D +ILDL + G + Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 +A+R P+ LSG E + L GAD Y+ K Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTI 612 >gi|126736445|ref|ZP_01752186.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2] gi|126713983|gb|EBA10853.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2] Length = 237 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 154/234 (65%), Positives = 187/234 (79%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TD+GE+GI+L K Y++D I+LD+ L D+ G Sbjct: 1 MRVLLVEDDPTTSKSIELMLTHANLNVYATDMGEEGIDLAKLYDYDLILLDINLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIDTPILILSGDDGTESKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIKTGQIAVNLDAKTVEVEGSTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 G DEPE+KIIDVFICKLRKKLS A G+NYIETVWGRGYVLR+ E + Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATMGENYIETVWGRGYVLRDPEPSTAHEPIA 234 >gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 224 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA +E+ L E + V V + G G+ + + D I+LD L G E Sbjct: 4 HILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFSGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ I D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 64 VCRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +L++N + + I LT KE+ ++ L + LT++ L ++ Sbjct: 124 EDPDVLEFSNLTLNQRTREIFRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL K I+TV G GYV+RE Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEEN-QEKRLIQTVRGVGYVMRE 224 >gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + + E F V T GED + + +D +ILD+GL I GF Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +L+ + D+V GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ GD + + + + ++ L KE+ ++ L+ T+E+ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I +LR KLS N I+T WG GY E Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 235 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 134/225 (59%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ + + L+++ +NV +TD G+ G+E CK D ++LDL L DI G +V Sbjct: 5 ILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDIDGIDV 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + + P+ +L+ S DK+ GL+ GADDYI+KPF+ EL+ARI+ ++RRS+ Sbjct: 65 CKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRRSK 124 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I GD++++ + V + LT KE+++++LLS + LT++ L+ + Sbjct: 125 NESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLLDKV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +DV I LRKK+ + YIETV G GY L++ Sbjct: 185 WGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229 >gi|297160788|gb|ADI10500.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA ++ L +E F V V G G+ + + ++D I+LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLATALARGLAAEGFAVDVAHDGVSGLHMAQEQDYDLIVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR TP+ +L+ D+ GL +GADDY++KPF+ L ARIRA++RR Sbjct: 61 RVCAQLRAVGDETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLQARIRALLRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+V+ A+ VE G + LT KE+ ++E L+L ++K L H++D Sbjct: 121 RAGVQVLKIGDLTVDPGARRVERAGAEVTLTAKEFAVLEQLALHAGRVVSKADVLAHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++V++ LR+KL + G+ I TV G GY L + Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-DLPFGRRSITTVRGAGYRLEADG 224 >gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 242 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + + L+ E + + G G+ + +DA++LDL L + G E Sbjct: 6 RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ G+L ++ A+ V V I LT +E+ ++ + ++ L Sbjct: 126 LARNARLESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + + ++ I +LR K+ I TVWGRGY L E Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVEADPAEPRRILTVWGRGYKLSPTGAGE 238 >gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E + VY G+ + + D IILDL L DI G E Sbjct: 7 KILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLMLPDISGEE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R P+ +L+ S ++ + GL GADDY+ KPF+ ++L+AR+ A++RR+ Sbjct: 67 ICKRIR-KISLVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRRTVK 125 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + G+L ++ + G I+LT EY+++ ++ T T+E + Sbjct: 126 ESSEDNKSKIIFDNGNLVIDTFVHEIRKAGSIINLTPNEYRILITMAGYPKKTFTREELI 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D I LR+K+ + Y+ TV G GY Sbjct: 186 SMALGDDFEGFDRTVDTHIKNLRQKIEDDPKAPKYLVTVHGVGYRF 231 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K +A + L E F V V G GI + D +ILD+ L + GFE Sbjct: 9 RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ +L+ ++ D+V GL+SGADDY+ KPF EEL+ARIRA++RR Sbjct: 69 VCRRLR-AGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L +N ++ V + G + LT KEY+++EL LT+++ + ++ Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL +G + TV G GY+LRE Sbjct: 188 GYDFGGESNIIEVYVRYLRQKLEE-SGEGRMLHTVRGAGYILREQ 231 >gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 222 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ ++ L+ E F V + G+ G+++ E+D +I+D + I G Sbjct: 1 MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A S P+ L+ ++ED V GL +GA+DYI KPF EEL+ARIR +RR Sbjct: 61 EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRR-N 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G ++VN V + I LT KE+ ++E L+ K+ T+ + H++D Sbjct: 120 NPESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +IDV+I LRKKL + G N I+T+ G GY++RE+ Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DIVGCGNIIQTIRGVGYIIRES 222 >gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 13/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ L +I L+ E + V + G+ +EL + D ++LD+ L +I G EV Sbjct: 4 VLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN-PDIVVLDILLPEIDGLEV 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR + S P+ +L+ + D++ GL+ GADDY++KPF+ EL+ARI+A++R Sbjct: 63 CRRLR-QRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + + +V+GDL ++ V+ G I LT +E+ ++ L + K + Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L ++ + +V+ + V I LR+K+ + IETV G GY Sbjct: 182 ERLLEEVWGYDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGYRF 231 >gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] Length = 244 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ ED+ L + + LKSE ++V + GED ++ F ++LD+ + G Sbjct: 24 IKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIMMPKRDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +R P+ +L+ ++ D++ G Q GAD+YISKPF+ + LV R+++I++R+ Sbjct: 84 EVCAEIR-KLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAG 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G+L ++ +V V RI LT +EY ++ L KN L +E L ++ Sbjct: 143 LLQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWG 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++ +D I LR K+ G + YI+T+ GY Sbjct: 203 MDYEGDIRTVDTHIKCLRIKI---PGAQEYIKTIRKIGYKFE 241 >gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E + V + GE+ + + +FD I++D+ + I GFE Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ L+ + +DK++G SG DDYI+KPF+ EL R+ AI++R Sbjct: 64 AIKRIR-RLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVST 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI DL +NL T+ I LT KE+ ++ LL+ K Sbjct: 123 GVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KL++ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I+L L+S + +++ G+ + Y+ D ++LD+ L G + Sbjct: 7 KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R +TPV +L+ DKV L+ GADDYI KPF +ELVAR++A++RR+ Sbjct: 67 VLKWIR-KADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANS 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S V +++ + TV I + KE++++ L+ KN T+E L ++ Sbjct: 126 ENVSSQVLNFNGLKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + +LR+KL G I+TVWG GY Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLHE--GNGWDIQTVWGVGYKFE 226 >gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 226 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D I+LD+ L + G+ Sbjct: 1 MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV L+ IED+VRGL+ GADDY+ KPF E +AR+R ++RR R Sbjct: 61 AILQTLRRSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + +L ++L + V G RI LT KE+ ++ELL RK L + + + ++D Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+V + +LR K+ + I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRVKV-DDPFEPKLIRTVRGMGYVLE 221 >gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 127/224 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ + IE L +N+ V V GE + +++D I+LD+ L + G Sbjct: 1 MKILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TP+ +L+ +I+D+V+GL +GADDY+ KPF+ EEL ARIRA++RR Sbjct: 61 ALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL V+ + V Q ++L+ KEY+++E ++ L+HL+ Sbjct: 121 TALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 PE + I LR+KL A + IETV+G GY L+E+ Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKES 224 >gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ D IILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIR-KTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A IV GDL + DA V+ + LT +E++++ L+ +T+E Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + ++L L E ++V + GE I+L FD +ILD+ L G+ Sbjct: 3 KILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR ++ S PV ILS ED++ G + G D+YI+KPFN + L+ARI+A+++ + Sbjct: 63 VLREIK-KYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKNTSN 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I G + +N + TV V G + L KEY+++ L L+++ L ++ Sbjct: 122 NTDHIIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ID I LRKKL I+TV G GY Sbjct: 182 DFPGSDRTIDTHIKNLRKKLGE-----ECIKTVRGIGYKFE 217 >gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ ALA + L+ E + V GE+ + L + D ++LD L + Sbjct: 3 MKPLILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLS 62 Query: 59 GFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI- 115 G EV R LR + P+ +L+ DK+RGL +GADDY++KPF+ EL+ARIRA+ Sbjct: 63 GIEVCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAML 122 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + ++ GD++++L A V +HL E+++++ ++E L Sbjct: 123 RRVQPVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ E + +DV I +LRK L+ + I TV GY L Sbjct: 183 NAVWGPDIYVEPRTVDVHIRRLRKALNGD-NDADIIRTVRAAGYAL 227 >gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 224 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G +++ + D ++LDL L + G E Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 64 VCRQVRAESDV-PIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+++++ TV RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 KAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221 >gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L+IEDD + ++L L+ E + V + GE G+ ++ D I+LD+ L I G+ Sbjct: 5 INVLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLPKIDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + PV +++G DK++GL+ GADDY+ KPF+ +E++AR++A++RR+ Sbjct: 65 EVCREIRKDRNV-PVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTN 123 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +N+ T+ + I L KE +++ L KN T++ L+ + Sbjct: 124 PYFGTNEEIALFGLKINIREYTLLREEKEIVLPPKELELLFFLISHKNNVFTRQQLLDEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + + IDV I ++R+K+ G+ ++T+ G GY N Sbjct: 184 WGYDYEGDPRTIDVHIKRIREKIGE-GSGEWSLKTIRGVGYKFEVNE 229 >gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 225 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L++ NF+ + GE+ +++ K + D I++D+ + + GF + Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ L+ DKV+GL+ G DDYI KPF+ EL+ARI AI+RR+ + Sbjct: 66 CARIR-EQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q G L ++ + V V G + LT KE+ ++ L+ ++E L ++ Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR KL A+ ++I+TVWG GY Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKFE 223 >gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 247 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ ++ + + D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 71 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 129 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I ++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 NGASGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238 >gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 227 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + D G G L ++D I+LD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL+++L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + IDV + +LR K+ + I+TV G GYVL +D Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYVLEVPDED 227 >gi|229916895|ref|YP_002885541.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468324|gb|ACQ70096.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++D++ L I+ L+ E F + +DG ++ + + ILD+ L D G+ Sbjct: 5 RILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS S DK+ GL G DDYI+KPF+ +E+ R++A +RR Sbjct: 65 QLCQQMRAQSNI-PILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G +N D V V G R+ LT KE ++ N L+KE Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I +LR+K+ YI+TV G GY L Sbjct: 184 VWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L L +E + V + G +G+ +D I+LD+ L + G+ Sbjct: 1 MRLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A TP+ +L+ D+ GL +GADDY++KPF+ L AR++A++RR Sbjct: 61 RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L ++ A+ V + G I LT KEY ++E L LR ++K L H++D Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++V++ LR+KL I TV G GY+L Sbjct: 181 FAYSGDPNIVEVYVSTLRRKLGA-----GLIRTVRGAGYLLE 217 >gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED + + I L L++ N+ V G+ G+ L FD IILD+ L I G ++ Sbjct: 5 ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGIDGLQI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A + TP+ +L+ S D+V GL+ GADDY++KPF+ EL AR+RA++RR + Sbjct: 65 CQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVAFN 124 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q GDLS+N + V + I LT KE+ ++ L+ +++ Sbjct: 125 TQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRDQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ ++ I +LR KL A Y+ TVWG GY E Sbjct: 185 LSAVWGYHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKFYE 233 >gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I + L S + G + + ++ D ++LD+ L + G E Sbjct: 7 KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLPGVDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIR-KSSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNY 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + ++ ++ V +G I + KE++++ L+ KN T+E L ++ Sbjct: 126 DEKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+K+ + G IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKI--SGGENWLIETVWGVGYKFE 226 >gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD ++ + L +ENF V G+ E + ++LDL + I G Sbjct: 1 MKILLIEDDIEISEMLCSYLIAENFEVVCATDGQKACEAFDIGFYSIVLLDLMIPKITGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ +R K + P+ I+S S DK GL GADDYI+KPF+ E++ARI+A +RR+ Sbjct: 61 NVMKYIR-QKSTVPIIIISAKDSDSDKTLGLGLGADDYITKPFSITEVMARIKANIRRNT 119 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +A G L +NL+ TV G I LT KE+ ++ LL TK Sbjct: 120 EYAAVQPEQTKLVWGPLVMNLENHTVTKSGEIIELTAKEFDILRLLLENPQRVYTKAQIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ + ++V I +LR K+ + + TVWG GY L E Sbjct: 180 SLIWNDAYMGDENAVNVHISRLRTKIEDDPRKPQVVITVWGIGYKLGEQ 228 >gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + I + L+ ENFNV G D +EL K D I+LD+ + I GFE Sbjct: 5 KVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGIDGFE 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R P+ +L+ DKVRGL+ GADDYI+KPF EL+ARI A++RRS Sbjct: 64 VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123 Query: 120 RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +++ GD+ ++ D V+ +G I LT +E+++++ L+ K +++E+ Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + + +DV I KLRKKL + YIETV G GY+++ Sbjct: 184 LSEVWGCGNLGDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMIK 231 >gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ +E + D ++LDL L G + Sbjct: 4 RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRQIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GD+++++ +V+ I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220 >gi|85709585|ref|ZP_01040650.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1] gi|85688295|gb|EAQ28299.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1] Length = 231 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 157/229 (68%), Positives = 193/229 (84%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG++ ++ K+R GADDY++KPF++EELVARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+ +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRDP-QDEA 228 >gi|49475924|ref|YP_033965.1| cell cycle transcriptional regulator ctra [Bartonella henselae str. Houston-1] gi|49238732|emb|CAF27988.1| Cell cycle transcriptional regulator ctra [Bartonella henselae str. Houston-1] Length = 233 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 166/227 (73%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDKA+ SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKAMTQSIELMLKSANFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM++IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLIVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNINYIDTVWGRGYVLRDPVEE 227 >gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum] Length = 240 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ ++ +E L ++V GE+ + + K + ++LDL + + G+ Sbjct: 5 KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V + LR P+ +L+ +S + D++ GL+ GADDYI KPF+ +EL ARIR+++R Sbjct: 65 VCQELRKE-SDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDK 123 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I G L ++++ V R+ LTG E+ ++ELL + ++ Sbjct: 124 ASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATI 183 Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ E + +++DV I +LR KL + + I T G GY+ + Sbjct: 184 LQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 233 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220 >gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563] Length = 238 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I LK+E + + G+ +E ++ D ++LDL L I G E Sbjct: 3 KILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VCRQIRKDSQV-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTAV 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++I GDL ++ D G + LT +E++++ LS N +T Sbjct: 122 VAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L ++ +V+ +DV + +LR+K+ + T G GY Sbjct: 182 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEENPSHPKILITRRGVGY 230 >gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 28 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 88 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 208 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 250 >gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E + V + GE+ + + +FD I++D+ + I GFE Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + + + + + +DK++G SG DDYI+KPF+ EL R+ AI+RRS Sbjct: 64 AIKIIRKLTNTLIIFL-TAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSNV 122 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L T+ I LT KE+ ++ LL+ K Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGKGEITLTPKEFDILCLLARNKGRVFPSSELYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KL++ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 229 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +A + L+ + + V + GE + +D +ILD+ L G+ Sbjct: 1 MRILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR A S P+ +L+ SI+D+V GL SGADDY+ KPF+ +EL+AR+RA+ RRS Sbjct: 61 AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+VN + VE G I LT KEY ++E L L ++ + +E H+++ Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKD 227 + +IDV+I +LR KL + G I T G GY+L + A D Sbjct: 181 ETFDAFTNVIDVYIKRLRAKL-DGPGSPRLIHTRRGEGYILTAKPEAGD 228 >gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 233 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RR+ Sbjct: 63 VARTIR-KTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ IV GDL + DA V+ G + LT +E++++ L+ +T+E Sbjct: 122 TIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232 >gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] Length = 243 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G RI+LT EY + L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243 >gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium jeikeium K411] gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium jeikeium K411] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++L+ E F V G + ++ + + D I+LD+ L + G + Sbjct: 4 KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 64 VCKAIR-ETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 122 Query: 122 HAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + +++ V G I LT E+ ++ L+ R ++E L ++ Sbjct: 123 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ I+TV G GY Sbjct: 183 YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 222 >gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 235 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD ++A + L E +++ GE+G+ K + +D +++DL + + G E Sbjct: 4 HILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R + P+ I+S S DK GL GADDY++KPF+ E+ ARI++ +RRS Sbjct: 64 VIRRIRT-HSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A+ G L ++ D V + I LT KE +++L N TK Sbjct: 123 YARQQQQEEQPQAQILTYGSLRIDFDHFIVIRNENEIQLTAKESDILKLFVANPNRVFTK 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+V I +LR+K+ +I+T+WG GY Sbjct: 183 AQLYGFIWKDDYMGDENVINVHIRRLREKIEKDPSHPVHIKTLWGIGYKWE 233 >gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM] gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 233 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++A+A ++ L+ E + V G++ +EL + + I+LD L G Sbjct: 7 KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGIT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R K P+ +L+ +S D L G DDYI+KPF EEL ARIR I+RR Sbjct: 67 VLRRIR-KKSEVPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEK 125 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ G ++L +I+LT KE+ ++ L +++ L Sbjct: 126 SNKQKENSTISFNFGPFKIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + +DV+I +R K+ + K I+TV G GY LR+ Sbjct: 186 DVVWGYDFVGQTNTVDVYIRTIRNKIGD--PNKKLIQTVRGLGYCLRK 231 >gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 6/229 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++DD+ + + E + V G++G+++ K F I+LD+ + + Sbjct: 1 MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---I 115 G+ +L LR + PV +L+ DK++G +G DDYI KPF+ EL R+ A Sbjct: 61 GYTMLCKLR-ESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKR 119 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + Q +I D+ +N TV+ I LT KEY+++ L++ K + +M Sbjct: 120 TKSNNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ + + I LR+KL ++ YI+T+WG GY + ++ Sbjct: 180 ELLWKDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 228 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ + VY GE+ +E D I+LD+ L + GF Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ L+ + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 65 VCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G L V+ + + V G RI LT E+ ++ELL + Sbjct: 124 TVSVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183 Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++++EDDK L +E+ L+ ++V + G D IE K + +ILD+ L D+ G+E Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K + +L+ + +DK+ G ++GADDY++KPF+ EEL+ARI+A++RR Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G L + + +TV G + L+ E+ ++ L+ K+ ++KE L+ ++ Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++V++ +RKKL I+T+ G GY L Sbjct: 186 DYYGSDNTVEVYVNYIRKKL-----SPELIKTIRGVGYKLV 221 >gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU144] gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU045] gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU028] Length = 241 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240 >gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341] gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341] Length = 234 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A+ ++ LK E ++V V + GE +EL D I+LDL L G E Sbjct: 5 KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVRAKKNI-PIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ D+ + +A ++ G I LT +E+ + L+ + LT+E Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + + YI T G GY + E Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGEE 234 >gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 228 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + +FD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium 8_1_57FAA] gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium 8_1_57FAA] gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L I LK E ++V G++ E ++DA+ILD+ + G Sbjct: 1 MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K STPV +L+ S+ED+V GL +GA+DY+ KPF EEL+AR+R ++R+ Sbjct: 61 SVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V+LD V I L+GKE+ ++ + L+++ HL++ Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +IDV+I LRKK+ + K I TV G GYVL+E Sbjct: 181 YDYMGSSNVIDVYIRYLRKKI-DDGREKKLIHTVRGVGYVLKEEE 224 >gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA +EL L SE + V V G G+ L + D +LD L + G E Sbjct: 4 HILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR S PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 64 ICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ DLS+N + V + LT KE+ ++E L T++ L ++ Sbjct: 124 TDEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL K + TV G GY LRE Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEEN-NEKRLVHTVRGVGYALRE 224 >gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5] gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 130/227 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ +A+++ L +N+ V + + G+ +L + YE+D I+LD+ L + G Sbjct: 1 MKILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + P+ +L+G S DK GL +GADDY+ KP ++EELVAR+RA++RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++Q ++ L ++ + V Q ++ LT KEY ++ELL + M L+HL+ Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D P + I LR KL A + +ETV+G GY L+ D Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227 Score = 65.0 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD +E +L + V G+ I D I+LDL + + G+E Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123 Query: 63 LRALRVA 69 + L+ Sbjct: 1124 MAGLKKC 1130 Score = 62.3 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 5/153 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++++L + + E + + D +ILD+ + + G E Sbjct: 375 KILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTMSGIE 434 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNK---EELVARIRAIV 116 + + +R P+ L+ S++E + GADD++SKP + V Sbjct: 435 LCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLERV 494 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH 149 R + ++ + + VE + + Sbjct: 495 RLVKIMERNRYAKTNQINENNKFIVESYHNLVE 527 Score = 49.6 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD LA + + ++ G + I L + D +ILDL L + GF Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKP 102 V+ L+ PV + S + + L+ G ++ +K Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKG 1295 >gi|27377311|ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27350454|dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 233 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 168/228 (73%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEHE 228 >gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 254 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ IL+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251 >gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 234 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 14 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ IL+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 74 CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G + +N V + + L KE++++ L + T ++E + ++ Sbjct: 133 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K K I+T+ G GY L Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231 >gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] Length = 233 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K ++ I+ + E + V G + +E+ D IILDL L +I G E Sbjct: 3 RILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIR-KTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A GDL + DA V + LT +E++++ L+ +T+E Sbjct: 122 AADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 236 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G + + + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 227 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G+ + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E+ D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+ Sbjct: 71 VCQELRKD-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I GDL ++ + + V +G RI LTG E+ ++EL+ R ++ L Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGYLFQ 238 >gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338] gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338] Length = 236 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + G + I + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEVR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S I GDL + DA + +G I LT +E++++ L+ +T Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233 >gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + + Y D I+LD+ + + G Sbjct: 10 RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 HAQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + ++L + V R+ LT E+ ++E+ LT+E Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++ EP +DV++ LR+K + A G + TV G GY LR E Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGEA 245 >gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 242 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++A+ + + L+ E F+V G+ + D ++LD+ L DI GF Sbjct: 18 IRVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGF 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V LR + P L+ + EDKV GL G DDY++KPF EL+AR+RAI+RR Sbjct: 78 AVCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAG 137 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + + DL ++ + + V G + LT EY+++ L LT+ L+H+ Sbjct: 138 AADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++++ ++ LR+K+ + I TV G GYVLR Sbjct: 198 WGHDFGGDARVLETYVSYLRRKIDDVP--PPLIHTVRGVGYVLR 239 >gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 232 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +++Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RRS Sbjct: 65 CQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSSFQ 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEEIF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL + I TVWG GY + + Sbjct: 185 ERVWNEDGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGYKIEK 232 >gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ F++ + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I +LR K+ + A I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221 >gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 119/220 (54%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD AL ++ +++ + V + G++G+ D ++LD+ L + G+E+ Sbjct: 6 VLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMNGYEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R + P+ +L+ ED +RGL+ GADDY++KPF+ EL+AR A +RR +GH Sbjct: 66 CRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLARAAAFLRRRKGH 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A ++ GD ++L A + G I LT KE++++E + R LT++ L+ ++ Sbjct: 126 AATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGND 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR K+ I+T+ GY Sbjct: 186 IVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFE 225 >gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ F++ + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I +LR K+ + A I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221 >gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L+ ++ L+ E ++V G G+E + + D +ILD+ L + GF V Sbjct: 6 ILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVMLPRLDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ IL+ D++ GL+ GADDY++KPF+ EL+AR+RAI+RRS Sbjct: 66 CRILRQESEV-PILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSERR 124 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G L V+ ++ ++L+ KE+ ++ L ++ L+++M L ++ Sbjct: 125 IGMMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLERVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I LR+K+ YI TV G GY Sbjct: 185 GYDFLGDSRTVDVHIRWLREKVEPDPSRPVYIHTVRGIGYRFEAP 229 >gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8] gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8] Length = 220 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA + L+ + V G + +D ++LDLGL + G Sbjct: 1 MRILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V V G + LT E++++ +L R +++ H+Y Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDVFI +LRKKL + IETV G GY L Sbjct: 181 QDHDRDSNTIDVFIGRLRKKLP-----PDTIETVRGLGYRL 216 >gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 232 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 65 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 124 VSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR+K + I+T+ G GY L Sbjct: 184 FEGNERTLDVHMNRLREKFQEE-KSRFSIKTIRGLGYRLE 222 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A ++L + E + V + G G++ ++D ++LD+ L + G+E Sbjct: 4 KILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMDGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ ++DKVRGL GADDY++KPF+ EEL AR+RA +R+ Sbjct: 64 VLKKIR-ENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + ++L V QG +I LT KE+ ++E L N L++E L ++ Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + + I T+ G GY LR+ ++ Sbjct: 183 YDYYGDTNVVDVYIRYLRSKI-DDPFDRKLIHTIRGVGYSLRDGEDED 229 >gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator protein [Pseudoalteromonas tunicata D2] gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator protein [Pseudoalteromonas tunicata D2] Length = 227 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +A +E L++E + + G++G+EL + +F I+LD+ L + G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +ALR+ K P+ +L+ M +D ++GL+ GADDY++KPF +EL+ARI A+ RR+ Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G L + + V + I LT KE ++ELL L++E L+++ Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P ++DV+I KLRKKL+ + G++ IET G GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina] gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina] Length = 248 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L +NV GE+ + L K + I+LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 71 VCQEIRKE-SDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRRVER 129 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L+++++ + V +RI LTG E+ ++ELL + ++ Sbjct: 130 VHFNPGIPTSGVMTVGFLTIDMNKRQVYKSNNRIRLTGMEFNLLELLVSKSGQAFSRADI 189 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++DV I +LR KL + + I T G GY+ + Sbjct: 190 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 239 >gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+K +A ++ L+ + V G++GIE K D I+LD+ + DI G+E Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDGYE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ LS S D+++G G DDY+ KPF+ +EL+ARI A +RR + Sbjct: 62 VCRKIR-DTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++++L ++ V V+G+ I LT KE+ ++ELLSL +KE Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + + I +R K+ YI+TVWG GY + Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGYKWEK 229 >gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] Length = 242 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I + ++ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 135 NQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 232 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G RI+LT EY ++ L++ +N T E Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWNERAYEINNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220 >gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 119/223 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ L +++ V V G+ G EL + + +D I+LD+ L + G Sbjct: 1 MRILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +L+ +I DK+ GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ V + + L+ KEY ++E ++ L +L+ Sbjct: 121 TTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + I LR+KL A + IETV+G GY L+E Sbjct: 181 FERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRLKE 223 >gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + I L LK E + V+ + GE+ + ++D+ + + G+E+ Sbjct: 4 ILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNKNGWEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ EDK++G Q G DDYISKPF+ EL+ R++A++RR + + Sbjct: 64 CREIR-DLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKIN 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ ++ + V + I KE+Q++ L+ ++E + ++ Sbjct: 123 THEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWGSD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I K+RKKLS I T+ G GY L Sbjct: 183 FDGFDRTVDSHIKKIRKKLSQQTAFD--IVTIRGLGYRLE 220 >gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 227 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +A I LK + V + G +G + E+D IILD+ L I G Sbjct: 1 MRILLVEDEPGIAQFINQGLKETGYGVDLAIDGLEGKRYIESVEYDIIILDIMLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R K TPV +L+ SIED+V+GL GADDY+ KPF EL+ARIRA+ RR Sbjct: 61 TLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL +NL + V+ I L+ E++++E L N LT+ ++D Sbjct: 121 LQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++DV+I LR+K+ + T+ G GY L+ + Sbjct: 181 LDFYTNSNVVDVYIGYLRRKIDRGFDN-QLLHTIRGVGYCLKPEGNE 226 >gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus ATCC 53653] gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus ATCC 53653] Length = 262 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 17/241 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L F V G + D ++LDL L + G + Sbjct: 9 RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLMLPGMDGLD 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V RALR PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ +++R Sbjct: 69 VCRALRGK-GPVPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRT 127 Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + ++ ++++ A+ G + LT +E+ ++ L Sbjct: 128 GPRASAGVRSHAPERPDPVLRRAGITLDPTARRATKDGRELALTLREFDLLAFLLRHPGV 187 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226 T+E + ++ ++ + V + +LR K+ + I+TVWG GY +A Sbjct: 188 ACTREELMRDVWGWDF-GDLSTVTVHVRRLRGKIEDDPAAPRLIQTVWGVGYRFDAPDAP 246 Query: 227 D 227 D Sbjct: 247 D 247 >gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 113/211 (53%), Gaps = 6/211 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + ++ L+ E + V V GE+ + + D I+LDL L + GFE Sbjct: 3 RVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ DK+ GL+ GADDY++KPFN EL AR++AI+RRS+ Sbjct: 63 VCRNIR-KTSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQS 121 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++L V V+ + LT KE+ ++ L++ ++E L Sbjct: 122 SSGDSGNLQVIRLQDLQIDLFQHKVRVRDKEVDLTSKEFALLSLMASHPGRVFSREKLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGG 207 H++ + + +DV I LR+K+ G Sbjct: 182 HVWGYDYYGDARTVDVHIRHLREKIEPDPGH 212 >gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +LA ++ L+ E + V GE+ + + D I+LD L + G E Sbjct: 5 RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R R + P+ +L+ D++RGL +GADDY+ KPF EL ARIRA+ R Sbjct: 65 VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRL 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A+ + GD+ ++ A V+ G +HL E+++++ ++E L+ + Sbjct: 125 RPGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I +LRK L+ A G + I TV GY L +A Sbjct: 185 WGSDVYVEARTVDVHIGRLRKALNAADAG-DPIRTVRSAGYSLDVDA 230 >gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 126/220 (57%), Gaps = 6/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ ++ V GE+ ++ K E+D ++LD+ L + GF+ Sbjct: 5 KILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDGFQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 65 VCQAIR-EFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +S G++ ++ +++ V + I+LT KEY ++ELL++ N ++E L+ Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 ++ + + +DV I +LR+K+ Y+ T WG Sbjct: 184 LVWGVDYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223 >gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 235 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ + + V G+ +E+ + D +ILDL L + G+E Sbjct: 5 RILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLMLPKLDGWE 64 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR P+ +L+ +D V GL+ GADDY+ KPF+ EL+AR++A +R Sbjct: 65 VCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRAR 124 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 I G L++ + V + G + L+ EY+++E L K +++E L Sbjct: 125 AQDALGDEGIAVGPLTLEPRSGEVLLDGTPLDLSPVEYRLLETLVRGKGRLVSREELLAK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + + +DV I +LR+K+ + TV GRGY L +D Sbjct: 185 VWGY-VAGDTRTVDVHIFRLRRKIEPDPEHPRLVHTVRGRGYRLLWTPED 233 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+FN++ G++ EL + + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 SAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEVRASDEPT 240 >gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 235 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F + G +E + D ++LDL L + G EV Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRT-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDS 122 Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + L+ G + ++++ TV V G + + KE+ ++E L LT Sbjct: 123 GAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVLT 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 183 RGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234 >gi|149203840|ref|ZP_01880809.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. TM1035] gi|149142957|gb|EDM30999.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. TM1035] Length = 238 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 152/226 (67%), Positives = 184/226 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I+TP+ ILSG E K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIATPILILSGADDTESKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTV+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKINVNLDAKTVDAGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL A G NYIETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLCEATDGVNYIETVWGRGYVLRDPEQ 226 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++EDD + + L L + + V + G + L + + D I+LD+ + + G EV Sbjct: 6 IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ P+ +S + K++GL++G DDYI+KPF+ EL ARIRAI+RR+ Sbjct: 66 CRRIRLKTTL-PILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGWR 124 Query: 123 AQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL +++DA+ + ++G ++ L KE+Q++ LL+ N T E + Sbjct: 125 NNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYDQ 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +V+ + V I KLRKK+ +I+TV G GY Sbjct: 185 VWGYYSEGDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGYKF 228 >gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 245 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + E D ++LD+ + + G+ Sbjct: 10 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDGYG 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 70 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 128 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 129 VGASGIPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 188 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 189 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 237 >gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 125/234 (53%), Gaps = 12/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E +++ G + I + + + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQH 235 >gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942] gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942] Length = 225 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A ++L L+ E + + + G +G+ +F ++LD+ L + G E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVMLPGLSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIRA +R++ Sbjct: 65 VLRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGS 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDL VN + V+ + LT +E+ ++ L LT+E L ++ Sbjct: 125 DPGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWGF 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV+I +RKK+ + K I TV G GY ++E Sbjct: 185 DYLGDTNVVDVYIRYIRKKM-DYPYEKQLIHTVRGVGYAIKE 225 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A ++L + E + V VT G G++ ++D ++LD+ L I GFE Sbjct: 5 KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ ++DKV GL GADDY++KPF+ EEL AR+RA +R+ + Sbjct: 65 VLKKIR-EHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + D++++L V G +I LT KE+ ++E L N LT+E L ++ Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + I+DV+I LR K+ + + I T+ G GY L+E+ ++ Sbjct: 184 YDYYGDTNIVDVYIRYLRSKI-DDPFDRKLIHTIRGVGYTLKEDKDED 230 >gi|291299360|ref|YP_003510638.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568580|gb|ADD41545.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L++E F GE +E + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRTEGFTPVFVTDGEQALEAFHEHRPDVVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VCKQIRLESGV-PIVMLTAKSDTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRGDD 122 Query: 122 HAQSLIVTGDL----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + G S+++ A + + G + LT E+ ++ L+ + T+E+ L Sbjct: 123 VAPERLQIGRPGLQVSIDVPAHSATLNGVEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ R + ++++V + +LR K+ I+TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPENPQLIQTVRGVGYK 225 >gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + L+ E + V V D G DG+ + + D ++LDL L + G E Sbjct: 3 RILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S PV +L+ DKV GL+ GADDY++KP++ EL+ARI+A++RR Sbjct: 63 VCREIR-RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + L ++++ VEV+G + L KE++++E+L + LT+ ++ Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + K +DV + +LR K+ + ++ TV G GY A Sbjct: 182 VWGANYVGDTKTLDVHVKRLRAKIEDDPRNPVHLVTVRGLGYKFESGA 229 >gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550] gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550] Length = 243 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G RI+LT EY ++ L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243 >gi|777765|gb|AAB38544.1| srrB [Synechococcus sp.] Length = 237 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L + + V G + + + D +ILD+ L D G++ Sbjct: 5 KILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNLPDTNGYQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ V +L+ D + G GADDYI+KPF+ + ARI AI+RR R Sbjct: 65 LCEIVQKRTGVY-VILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V G I LT E+ ++ L+ + + + + Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNALIQAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I ++RKKL I+TV G GY Sbjct: 184 WEYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227 >gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 249 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A + L + V D G + + D ++LDL L + G E Sbjct: 16 RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLPGMDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 76 VCRRMRG-HGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 134 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+V+ A+ G + LT +E+ ++ +E + ++ Sbjct: 135 AAPGHRLGAAGLAVDPAARRATKNGSELALTLREFDLLSFFLRHPGRAFGREDLMREVWG 194 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + +LR K+ + I+TVWG GY Sbjct: 195 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRF 234 >gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + + Y+ D I+LD+ + + G Sbjct: 10 RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 HAQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + ++L + V R+ LT E+ ++E+ LT+E Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++ EP +DV++ LR+K + A G + TV G GY LR E Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGEA 245 >gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756] gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756] Length = 224 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L I LK E ++V G++ E ++DA+ILD+ + G Sbjct: 1 MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K STPV +L+ S+ED+V GL +GA+DY+ KPF EEL+AR+R ++R+ Sbjct: 61 SVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V+LD V I L+GKE+ ++ + L+++ HL++ Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +IDV+I LRKK+ + K I TV G GYVL+E Sbjct: 181 YDYMGSSNVIDVYIRYLRKKI-DDGREKKLIHTVRGVGYVLKEEE 224 >gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 239 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + +T Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPEQRDT 239 >gi|332670978|ref|YP_004453986.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340016|gb|AEE46599.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 227 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA I ++L+SE F + G++ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMIGIVLRSEGFEPVFCEDGDEALATFRATQPDLVLLDLMLPGRDGNE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYISKPF +ELVAR+RA +RRS Sbjct: 64 VCRQIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYISKPFKPKELVARVRARLRRSDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GD+S+++ V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEHLSIGDVSIDVPGHRVARAGRPISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ N + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIENDPEQPEIVVTVRGVGYK 221 >gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 236 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E F + + GE+ + + ++ + ++LDL L + G+ Sbjct: 6 RILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDGYS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREMRAQSPV-PIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124 Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + DL VNL +V GH I + KE +++ L+ N T+ Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L+H++ + + +DV I +LR+K+ + A + TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHASWA--LTTVWGIGYKFE 233 >gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 230 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L+ ++L L + V GE+ L + +DAIILDLGL + G Sbjct: 1 MRILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R ++TPV IL+ + +KV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ L + + +++ + HLYD Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + + I+VFI ++RKK+ IETV G GY L + E T Sbjct: 181 QDFDRDSNTIEVFIGRVRKKIGAD-----RIETVRGLGYRLICPEDEMGAETAGT 230 >gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 248 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 9/239 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ ++ L + V G + +E + D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKD 129 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G+L ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 PVVGIPNSGVIQVGELRIDTNKRQVYRGEERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 ++ + +++DV I +LR KL + I T G GY+ + + E Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVEAVASEGT 248 >gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 229 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+SE F GE + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R++R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VARSIRGESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L+ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 123 AAPELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|254439177|ref|ZP_05052671.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198254623|gb|EDY78937.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 239 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 154/226 (68%), Positives = 184/226 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + A SIELML N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G Sbjct: 1 MRVLLVEDDPSTAKSIELMLSHANLNVYTTDLGEEGIDLAKLYDYDLILLDINLPDLNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTVEV +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDNHIETVWGRGYVLRDPEP 226 >gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 240 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 14/233 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--------FYEFDAIILDLG 53 +L++ED+++L+ + +L+ E F V G ++ D ++LDL Sbjct: 8 HVLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLM 67 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L + G EV R LR + S PV +++ S DKV GL+ GADDY++KP++ EL+ARIR Sbjct: 68 LPGMSGTEVCRQLR-STSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIR 126 Query: 114 AIVRR-----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 A++RR + A S+I G ++++++ V V G + L KE+ ++E L Sbjct: 127 AVLRRGGEAENAEDATSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNAGRV 186 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LT+ ++ ++ + K +DV + +LR K+ + TV G GY Sbjct: 187 LTRAQLIDRIWGSDYVGDTKTLDVHVKRLRGKIEEDPSSPVQLLTVRGLGYKF 239 >gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 234 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDDKA+A L++ +F+V + G++G E +FD I+LDL L GF Sbjct: 3 RILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSADGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R K TP+ ++S DKVRGL GADDYI KPF+ EL AR++A + R Sbjct: 63 VCRAIR-QKKDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I TG L + +A+ V G + LT +E+ ++ + +K+ Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + V I ++R+K+ YIETVWG GY + Sbjct: 182 DRIWGMDALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGYRFQ 228 >gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ +A I L E + V GEDG+E + I+LDL L GF Sbjct: 4 RVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R P+ +L+ S DKV GL+ GADDY++KPF EL+ARI+A++RR Sbjct: 64 VCKEIRSQSSV-PILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNL 122 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ D+ +NL V+ QG I LT +E+Q+ L R+ +++E Sbjct: 123 SGQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ E + +DV I +LR+KL + G +YI T G GY LR Sbjct: 183 RMIEEVWGYDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYLR 232 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L + V + G + +E+ DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR++ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DLS++ + V RI LT E+ ++E+L LT+ L Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 229 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR + PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A+VRR+ Sbjct: 61 ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ ++ G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPEGELKPIETVRGRGYRF 220 >gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 243 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ +++ L E + V G D + + Y D I+LD+ + + G Sbjct: 10 RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ DL ++L+ + V R+ LT E+ ++E+ LT+E Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GY LR D Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242 >gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 223 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 232 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++A+A I+ L+ + + V V G + ++ FD +ILDL L I G Sbjct: 1 MRVLIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLMLPQIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF-NKEELVARIRAIVRRS 119 V R LR PV +L+ SI+D+VRGL SGADDY+ KPF +E L R + Sbjct: 61 TVCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRST 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ DL ++ + V G I LT KEY ++E L LT+ M H++ Sbjct: 121 DAPKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +IDV+I LR+K+ + I+TV G GY L A+ E Sbjct: 181 NYDTFNQSNVIDVYIRNLRRKI-DDPFPVKLIQTVRGAGYRLWYEAEHE 228 >gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K L ++ L+++ ++V GE+ ++ E+DA++LD+ + I G Sbjct: 1 MRILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIMMPKINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VL+ +R STPV +L+ SIED+V GL GADDY+ KPF EEL+ARIR ++R+S Sbjct: 61 QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ +L+V+L+ V I L+ KE+ ++ + + K L+++ H+ Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++DV+I LR+K+ + + I T+ G GYVLRE+ Sbjct: 181 WNYDYAGASNVVDVYIRYLRRKI-DDSYEPKLIHTIRGAGYVLRES 225 >gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] Length = 233 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A +E LK E + V+V G+D +EL + D ++LD+ L G E Sbjct: 4 KIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVRKKYDM-PIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + IV D+ V +A +++ +G I LT +E+++ L+ +T+E Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV I +LR+K+ + A YI T G GY L+ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGYFLQ 230 >gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 228 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIRKDSNV-PVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V +++ ++ V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G + +ETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEEWQLETVWGVGYKFE 226 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD+ +A + L L+ E + + G + L +DA+ILDL L + G E Sbjct: 6 KILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+AR++A+ RR Sbjct: 66 ICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQEA 125 Query: 122 HAQSLIVTGDLS------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ + G + ++ A+ V ++G + LT +E+ ++ + ++ L Sbjct: 126 MGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++++ + E ++ I +LR K+ A I TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGYKFAVEKPE 237 >gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] Length = 227 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA I LK E + V V GE G EL +D IILD+ L + G Sbjct: 1 MRILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIMLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR ++ PV +L+ +++DKV GL GADDY++KPF EL+AR RA++RR Sbjct: 61 SLCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPFAFAELLARARALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++ V G+ I LT KEY ++E L KN LT+ + H++D Sbjct: 121 PQLQARLTAADLELDPATHRVCRGGNEIALTNKEYALLEFLLRNKNRVLTRTAIIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P I+D I LR K+ I TV G GY+L + Sbjct: 181 ISYDPMTNIVDAHIRSLRAKMDRDFS-PALITTVRGAGYMLEDEE 224 >gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX] gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX] Length = 225 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ +E + + D ++LDL L G + Sbjct: 4 RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RR+ Sbjct: 64 VCRQIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GD+++++ +V I+LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++LA + +L+ E F + G + D ++LDL L + G + Sbjct: 3 RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLMLPGMGGND 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR PV +++ S DKV GL+ GADDY++KP++ EL ARIRA++RR + Sbjct: 63 VCKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + +++D V V G ++ L KE+ ++E L + LT+ ++ Sbjct: 122 AESETSLDGALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + + TV G GY L Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPERLVTVRGLGYKLE 227 >gi|240850928|ref|YP_002972328.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii as4aup] gi|240268051|gb|ACS51639.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii as4aup] Length = 233 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 165/227 (72%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A+ SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM++IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSSVNYIDTVWGRGYVLRDPVEE 227 >gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD A+ +++L L + V V GE+ + K D I+LD+ L + GFEV Sbjct: 4 LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRQIR-RTEQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V GDL+V+ A TV G I LT E +++ LS L+++ L +++ Sbjct: 123 TSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I+TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRLDPP 224 >gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 233 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ LK E ++V + + GE +EL D I+LDL L G E Sbjct: 5 KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVRAKKNI-PIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + D+ + DA ++ G I LT +E+ + L+ LT+E Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + YI T G GY + E Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGEE 233 >gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 230 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ + L + N+ V E G +L ++ D ++LD L + G + Sbjct: 6 ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + TP+ +L+ D+V+G +SGADDY+ KPF+ LVAR++A++RR Sbjct: 66 AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQS 125 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI G L ++L + V + L E+++++ N T+ L+ + Sbjct: 126 PEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLDQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I +LR KL + G +YI+TV G GY + Sbjct: 186 WGENVVVEERTVDVHIRRLR-KLLDPVGAADYIQTVRGAGYRFSVD 230 >gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter sulfurreducens PCA] gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter sulfurreducens PCA] gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 223 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 117/222 (52%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+K A ++ F G+DG+ L + +D IILD+ L G+ Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR PV LS ++ D+VRGL+ GADDY+ KPF EL+AR R I+RR Sbjct: 61 EVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L +G I LT KE+ ++ LL RK L++ + ++ Sbjct: 121 SRQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+DV I +LR+K+ + + I TV G GYVL Sbjct: 181 INFDSDTNIVDVAIRRLRRKV-DDPFERKLIHTVRGAGYVLE 221 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L + + V GE+G++ + D +ILDL L ++ G E Sbjct: 7 RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGEE 66 Query: 62 VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR P+ IL+ + EDK+ GL +GADDYI+KPFN EEL+ARIRA +RR + Sbjct: 67 VCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRRQ 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S+I GDL++NL ++ ++ LT +E+ ++E L+ + ++KE ++ Sbjct: 127 PQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V+I LR KL A G + I T+ G GY+LR Sbjct: 187 YSFDIDSDAVKVYISYLRSKL-TAGGEPDMIHTIRGIGYMLRAP 229 >gi|300790141|ref|YP_003770432.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799655|gb|ADJ50030.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 230 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L+ + V + G +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLEFNGYQVQLASDGAQALEAIIADRPDAMVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAI 120 Query: 121 GHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ DL+++ + V G I LT E+ ++EL LT+ L Sbjct: 121 PEGQNGQASEALAFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 181 EEVWGYDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 227 >gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] Length = 229 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A L+ ++ + G++G+E K + ++LDL L D+ G+E Sbjct: 3 RILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPDMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R P+ +++ + D +RGL GADDYI+KPFN +L+AR++A + R Sbjct: 63 ICRQIR-EISEIPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIARFDR 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + L + + V V LT KE+ ++ ++ N +KE L Sbjct: 122 LVSRGQNKEEDMRIRGLHIQPVTRKVFVNSQEKVLTAKEFDLLLFMASSPNQVFSKEHLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V + V I +LR+K+ +YIETVWG GY + Sbjct: 182 EQVWGFDFYGDVTTVTVHIRRLREKIEKDPSDPDYIETVWGVGYRFK 228 >gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 227 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++AL+ + +L E F V D G D + + D ++LD+ L + G E Sbjct: 3 KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCRKLR-EVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + +++D V V G I + KE++++E+L +T+ + Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV I +LR K+ + Y+ TV G GY Sbjct: 182 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 226 >gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] Length = 224 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ + + L+ E F V G G+ + D ++LDL L + G + Sbjct: 3 RILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLPGMDGCD 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R L+ ++ PV +L+ D++ GL GADDY+ KPF+ ELV RIRAI R Sbjct: 63 VCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRRG 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 SR + + G L ++++A V + G + LT E++++E L T+E LN + Sbjct: 123 SRPGMGTALCRGALLLDVEAHRVTLDGQEVALTATEFRLLEDLMRHAGAVRTREQLLNAV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +D + +LR KL A +ETV G GY LR Sbjct: 183 WGYSFEGYARTVDTHVRRLRAKLGEEAAA---LETVRGVGYRLR 223 >gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA ++ +L+ F V + D GE+ + L + FDA++LDLGL + G Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A I PV IL+ +KV G ++GADDY++KPF EE+V R++A++RR+ Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + +V G L ++ + V+G + LT +EY+++ L LR+ T+++ ++H+YD Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +IDV + +LR+KL I TV G GY L + Sbjct: 181 RDSDRDSNVIDVLVGRLRRKLGA-----PLIHTVRGLGYRLEAES 220 >gi|83859270|ref|ZP_00952791.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii HTCC2633] gi|83852717|gb|EAP90570.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii HTCC2633] Length = 233 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 163/227 (71%), Positives = 199/227 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A A IELMLKSE FN YVTDLGE+G++L K Y++D I+LDL L D+PGF Sbjct: 1 MRVLLIEDDRATAQGIELMLKSEGFNTYVTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TP+ ILSG + I++KVRGL SGADDY++KPF+KEEL+ARI A+VRRS+ Sbjct: 61 DVLKTLRVAKVDTPILILSGNADIDNKVRGLGSGADDYMTKPFHKEELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGDIAVNLDAKTVEVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL++A G ++IETVWGRGYVLR+ + + Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATSGDHHIETVWGRGYVLRDPSDE 227 >gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 236 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R++++EDD+A+A+ ++ L+ E + V G++G+E K YEF +++D+ L ++ GF Sbjct: 4 RLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R PV I+S + DKV+GL+ GADDYI+KPF+ E+ ARI A +RR + Sbjct: 64 LCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYKK 123 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + V G L + K V V I +T KE++++ L++ N +KE Sbjct: 124 VDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEELY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +H+++ D + V I +LR+K+ +++ +I+TVWG GY Sbjct: 184 HHIWESMDVEGNNTVTVHIKELREKIGDSSKNPTFIKTVWGVGYKF 229 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ I E + V G +G+ FDA++LD L + G Sbjct: 4 RLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLDGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A+ R Sbjct: 64 VIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + V G I LT +E+Q++E RKN +++ M L ++D Sbjct: 124 SEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV I KLRK+L + AGG IETV G GY++ ++ Sbjct: 184 YHFDPNTNVVDVHISKLRKQL-DEAGGPPLIETVRGAGYMVSDD 226 >gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 225 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V I +LR K+ + A I TV G GYVL KD+ Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP--KDDA 225 >gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] Length = 222 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I L E +NV G+ ++ + E+D +I+D+ + + G Sbjct: 1 MRMLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMIPHVNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV L+ +D VRGL +GA DY++KPF E +AR+R ++R Sbjct: 61 EVLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I G L V+++ G I LT +EY ++E L+ +N +T+E ++++ Sbjct: 121 VVNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D+ ++DV+I LR+K+ + I+T+ G GY L Sbjct: 181 IDDDVNSNVVDVYIRYLRRKI-DDKYDDKLIQTIRGVGYKLE 221 >gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 242 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 124/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + E D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I ++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGASGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIIEPGEE 242 >gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] Length = 227 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E + V G + + + D ++LD+ L + GF+ Sbjct: 4 RILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R Sbjct: 64 VCRAIR-RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DLS+++ V+ +G I LT E+ ++ L+ ++E L ++ Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222 >gi|257057242|ref|YP_003135074.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587114|gb|ACU98247.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L+ + V + G +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLQFNGYQVDLASDGAQALEKVATDRPDAMVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVARRLRSVGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAG 120 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL++N + + V I LT E+ ++EL L + L Sbjct: 121 QEGASGDTDVLTFADLTLNPNTREVTRGDRSISLTRTEFSLLELFMTYPKHVLARSRILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 181 EVWGYDFPTSGNALEVYVGYLRRK-TEAGGEPRLIHTVRGVGYVLRE 226 >gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 239 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ R E ++ I +LR K+ I TVWGRGY L + +T Sbjct: 186 NAVWGYRHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPDQRDT 239 >gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +E+ L +E + V G + +++ E D +ILD+ + + G EV Sbjct: 6 VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIMMPKMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R + P+ +LS S DK+ GL +GADDY+ KPFN ELVAR+++ +RR + Sbjct: 66 CMRMR-KSKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYKRL 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q +I DL +N V+V + LT +E++++ELLS + + E Sbjct: 125 NVPKKVDQEVIEVDDLMINTKNHQVKVGNKDVKLTPREFEILELLSSNRGVVFSIEKIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I K+R+K+ +I+T+WG GY + + Sbjct: 185 SVWKQDFFESDNTVMVHIRKIREKIEENPRRPRFIKTIWGVGYKVEK 231 >gi|183600334|ref|ZP_02961827.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827] gi|188020124|gb|EDU58164.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827] Length = 220 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F + G+ G +DA+ILDL L + G Sbjct: 1 MRILLIEDDRLIGDGLKVGLSQLGFTIDWFADGKQGQVALFDAPYDAVILDLSLPSVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 EILKFWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALAEVAARLQALIRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G + ++ A TV G RI L KE ++ L N L++ LY+ Sbjct: 121 GQLSPILKHGHIEMDPVAMTVTCHGERIELKSKELSLLSLFLHNPNKVLSRAFIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V I LR+KL +I TV G GY L E A Sbjct: 181 WDEEVSSNAVEVHIHHLRRKLGT-----RFIRTVHGVGYRLGEEA 220 >gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 67 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229 >gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +A I+ L+ E F+ + G + +++ D IILDL + + G Sbjct: 1 MDILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D+V GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVE-----VQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +G + T V+LD +T Q + LT E+ ++ + Sbjct: 121 SLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ + +++D + +LRKK+ ++I+TV G GY ++ Sbjct: 181 TQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFEDS 233 >gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 236 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 12/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L E ++ G + + + + D +ILDL L ++ G E Sbjct: 3 KVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G+ + LT +E++++ L+ +T Sbjct: 122 IETAVAEENAISGTQELTIGNLQILPDAFVAKKYGNEVELTHREFELLHHLANHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ + Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKAH 235 >gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 229 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E F V V G D + +D I+LDL L + GF Sbjct: 1 MRVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A+ PV +LS + D+VRGL GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ + G + L+ KE+ ++E L L++ L+H++D Sbjct: 121 QERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++D ++ LR+K+ G ETV G GY LR NA Sbjct: 181 LAYDRNSNVVDQYVAYLRRKIDKPFGVAQL-ETVRGAGYRLRVNA 224 >gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 227 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V V G G++L E+D +++D + I G Sbjct: 1 MRLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ L+ +IED V GL +GA+DYI KPF EEL+ARIR +RR R Sbjct: 61 EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRR-R 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + TG+L+V+ + + + LT KE+ ++E L K T+ + H++D Sbjct: 120 GSESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +IDV+I LRKKL +AAG ++ I+T+ G GY++R+ + Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DAAGCRDLIQTIRGVGYIIRDEGGE 225 >gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1] gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D ++LD+ L + G+ Sbjct: 1 MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R + PV L+ +ED+VRGL+ GADDY+ KPF EL+AR+R ++RR + Sbjct: 61 GVLQTVRRSGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++L + V G +I LT KE+ ++ELL R+ L + + + ++D Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +I+V + +LR K+ + I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DDPFEPKLIRTVRGMGYVLEAP 223 >gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 225 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V I +LR K+ + A I TV G GYVL KD+ Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP--KDDA 225 >gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] Length = 232 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + I L L +E V G + + D ++LD+ + + G++ Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 L+ +R PV +L+ + D+V+GL+ GADDYI+KPF+ EL AR++A++RRS + Sbjct: 68 LQRIREESAV-PVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A I G L++ +T G + LT KE+ ++ LL+ ++E L+ ++ Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I LR KL AG I TVWG GY E Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226 >gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 231 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A + L+ + V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLMLPKMDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ + D+V GL++GADDY++KPF+ EL R+++++RR+RG Sbjct: 64 VCRKLR-ERWPVPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRARG 122 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G L V++ A V + +I LT +E+ ++ L ++ L+ Sbjct: 123 ASTPAGTGVLRDGTLVVDVGAHEVRLGDGQIMLTAREFDLLAHLMRNPRQAFSRSALLDQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + +LR+K+ I TVWG GY Sbjct: 183 VWGW-SFGDSSTVTVHVRRLREKIEPDPTAPRRIVTVWGVGYRYEP 227 >gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ A SI+L L+ + F + G +ELC+ D +ILD L + G E Sbjct: 3 RILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPLVDGAE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ ++ DK+ GL+ GADDY++KPF+ ELVAR+ A+ R Sbjct: 63 ICRRLRAAGNI-PIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAV--LRRA 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ + T+ G I LT E++++E L ++ L ++ Sbjct: 120 APAPAPRFAAIAIDFERGTLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERIFGW 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I LR+K+ + I T++G GY Sbjct: 180 DYEGTERTVDVHIANLRRKIDDNPAQPALIATIFGAGYKW 219 >gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 228 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + + D I+LDL L + G E Sbjct: 5 RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 65 VCRTLRARSTV-PVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++++ V V G ++ L KE++++E+ LT+ ++ + Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 184 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFEP 228 >gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A + L L +E F V+ D + D ILD+ L D+ GFE Sbjct: 4 KILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPDMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ DK+ GL GADDYI+KPF E+VAR++A +RR + Sbjct: 64 LCQKIR-EKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYKH 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ N + G + LT E+ ++ +L +K ++ E + Sbjct: 123 YNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELFH 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I LRKK+ ++ YI+TVWG GY + + Sbjct: 183 EIWGDEYFSKSNNTITVHIRHLRKKMDDSFENPKYIKTVWGCGYKIEK 230 >gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 238 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 63/219 (28%), Positives = 113/219 (51%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E + G + + D ++LDL L G + Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+ D V+GL++GADDY++KPF ELVAR+RA +RR Sbjct: 77 ICQDIRTQSTV-PIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD+ +++ A V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 136 GQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium spinosum DSM 4136] Length = 226 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ + L+ + V V GE+G++ + FD I+LD+ L G+ Sbjct: 1 MRILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR TPV L+ S+ D+VRGL+ GADDY+ KPF E +AR+R ++RRS Sbjct: 61 HVLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL ++L H I LT KE+Q++ LL+ R+ L++ ++D Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +DV + +LR+K+ + I T G GY+L + + Sbjct: 181 MNFSTDSNAVDVAMGRLRRKV-DEPFENKLIHTQRGLGYILEDRGQ 225 >gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92] gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92] Length = 230 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ EDD + + +L+ E + G++ L ++ D ++LD+ + + G+ Sbjct: 1 MKVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIMMPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R PV ++ S D+V GL+ GADDYI KPF E++ARI A++RR Sbjct: 61 AVCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRRCN 120 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 DL+V +I L+ ++ ++++LL + ++M Sbjct: 121 KALPAEQIENDHFTMDDLTVLPLQLRAHRDQTKIELSLRDIKILQLLYREAGKVVDRDML 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N + P + +D I KLRK + I+T G GY + Sbjct: 181 FNECWGRDYLPSSRTLDQHISKLRKLIEIDPRQPRIIKTAHGVGYRFDKE 230 >gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ ++ + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I ++ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 TGASGIPSSGVITINNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAKD 227 ++ + +++DV I +LR KL + I T G GY + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIVEPGEE 242 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD +A + L L+ E + + G + L + ++DA+ILDL L + G E+ Sbjct: 7 ILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGLEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + Sbjct: 67 CRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQAM 126 Query: 123 AQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + ++V++ G + LT +E++++ + ++ L + Sbjct: 127 GLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLEQV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++ I +LR K+ A I TVWG+GY E Sbjct: 187 WGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAE 231 >gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ ++V + G + +E + + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR + +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR Sbjct: 61 EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +++ + DL +N D + V+ I LT E+ +++LL L++ Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ ++V+I LRKK + G I TV G GYVLREN Sbjct: 181 ILEEVWGYDFPSSGNALEVYIGYLRKK-TEGGGESRLIHTVRGVGYVLREN 230 >gi|225020670|ref|ZP_03709862.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii ATCC 33806] gi|305679950|ref|ZP_07402760.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii ATCC 14266] gi|224946616|gb|EEG27825.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii ATCC 33806] gi|305660570|gb|EFM50067.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii ATCC 14266] Length = 228 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD A++ + L+L +E F V + G +E+ + D ++LDL L + G + Sbjct: 8 KVLVVDDDPAISEMLTLVLSTEGFASVVVNDGGQAVEVFQRENPDLVLLDLMLPGMNGID 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + RA+R P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RRS Sbjct: 68 ICRAIRQESTV-PIVMLTAKTDTVDVVLGLESGADDYIPKPFKPKELVARVRARLRRSDE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDL +++ +V G I LT E+ ++ L+ + T+E L ++ Sbjct: 127 SSTDSMEVGDLLIDVPGHSVSRDGEEISLTPLEFDLLHELASKPGQVFTREELLQRVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R+ + ++++V + +LR K+ + TV G GY Sbjct: 187 RNASDTRLVNVHVQRLRAKIEKDPEKPQIVLTVRGVGYK 225 >gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 236 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L+ + V GE+G L +D ++LDLGL G Sbjct: 1 MRLLVVEDDKDLNRQIVSALERAGYAVDRAFDGEEGWFLGDTEPYDGVVLDLGLPGKDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +KV+G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 TVLSDWRKAGRVMPVLILTARDRWGEKVKGFDAGADDYVTKPFHIEELLARLRALMRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ G +S + V V+G + LT EY+++ L + +++ + HLYD Sbjct: 121 GHASSVFSCGPVSFDERGGKVSVEGQPVKLTSHEYRLLGYLMHHQGKIVSRAEIVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + I+VF+ +LRKKL I T+ G GY+L D+ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLGVD-----VIHTMRGLGYILAPPTADDGA 225 >gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 109/229 (47%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDK++A + L+ F + G G+E E+D I+LD+ L GFE Sbjct: 3 KILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLPGKDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +++ +RGL GADDYI KPF+ ELVAR+ A + R Sbjct: 63 ICQEIR-KVKEIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121 Query: 122 HAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G N D++ V + I L KE++++ L+ N +K+ Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ + + V I ++R+K+ YIETVWG GY Sbjct: 182 TLLDRIWGEESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGYRF 230 >gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGDSG---EYIKTIYGVGYKL 221 >gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+A+A L++ ++ V + + GE G++ +F I+LD+ L GF+ Sbjct: 3 RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR A + P+ ++S DK+RGL GA+DYI KPFN EL+AR+++ + Sbjct: 63 VCRNLR-AVKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + +L+++L++ V + G+ + L KE++++ L+ N +K+ Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E+ + V I ++R+K+ + +IETVWG GY R+ Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229 >gi|302530375|ref|ZP_07282717.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439270|gb|EFL11086.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L+ + V + G +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLEFNGYTVELASDGAQALETILANRPDAMVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ + LS + + V G I LT E+ ++EL LT+ L Sbjct: 121 PDAQQGETSEVLSFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G I TV G GYVLRE Sbjct: 181 EEVWGYDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 227 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ + V+ G + + L + D +ILD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A I P+ L+ + DKV GLQ+G DDY++KPF EE+VARI AI+RR++ Sbjct: 71 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 130 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++ + V G I L+ E++++ L + + ++K L+H++ Sbjct: 131 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG----KNYIETVWGRGYVLRENAK 226 + E + I++ +I LR+KL + I+T G GY+LR+ + Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDPNE 241 >gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 260 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 260 >gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S] gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S] Length = 226 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++LA + +L+ E F V G + + D ++LD+ L + G +V Sbjct: 2 LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 62 KQLRAKSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADNE 120 Query: 124 QSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V G + ++++ V V G + L KE+ ++E L LT+ ++ Sbjct: 121 AATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ G ++ TV G GY L E Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 226 >gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931] gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931] Length = 228 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++AL + +L E F V D G D + + + D ++LD+ L + G E Sbjct: 3 KILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R A S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKKIR-ASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + ++++ V V G + + KE++++E+L +T+ + Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV I +LR K+ A Y+ TV G GY Sbjct: 182 RVWGADYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGYKFE 227 >gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] Length = 220 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARI+A++RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + V GDL V+ A+ V + + LT KE+ ++E L LR ++K L H++D Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + I++V+I LR+KL I TV G GY L Sbjct: 181 FAYEGDPNIVEVYISALRRKLRA-----RLIRTVRGAGYRLE 217 >gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD ++ + L+ E + V + G G+ + D ++LDL L +PG E Sbjct: 7 HILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLPKLPGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR+ PV +L+ + D++ GL GADDY+SKPF+ ELV R+ A++RR+ Sbjct: 67 VCRALRIE-SEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRAVR 125 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+L ++ ++ ++G +++LT +E+ ++E L ++ L Sbjct: 126 TEAAERPGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + + V + +LR+K+ +A + TVWG GY Sbjct: 186 RVWDWTF-GDQSTVTVHVRRLREKIEDAPAQPKRLVTVWGVGYRFE 230 >gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 218 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q G + +N ++ +EV G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268] gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268] Length = 224 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D++ + ++ LK +++ V + GE+ I+L K IILD+ + + G Sbjct: 4 IKILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L+ +R PV +L+ S D+++G GAD+YISKPF+ + LVAR+ A++RRS Sbjct: 64 WTALKTIR-EHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L+ G + ++ A +V V G I L+ KEY++++ K L++E LN+++ Sbjct: 123 GVQKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL + YI+TVWG GY Sbjct: 183 NYDYFGDARTIDTHVKKLRAKLMDKG---EYIKTVWGMGYKFE 222 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+A ++ L+ + V V G + K +F+AI+LDL L ++ G Sbjct: 7 KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR K+STP+ +++ D+V GL+ GADDYI+KPF+ E+VAR++A++RRS+ Sbjct: 67 VLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 126 Query: 122 HAQSLIVTGDLS------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +N KTV + + LT +EY ++ + R + +E L Sbjct: 127 STDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +++D+ I LR K+ + ++TV G GY Sbjct: 187 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGY 230 >gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A + L LK+E + V+ ED + K D +LD+ + I GFE Sbjct: 4 RILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIMMPKINGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + PV +L+ DK++GL GADDYI+KPFN E+VAR++A +RR + Sbjct: 64 ICKIIR-EKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYKK 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + + D+ + ++LT E+ ++ L + + E Sbjct: 123 YNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR+K+ +I+TVWG GY + E Sbjct: 183 AVWKEKYFDSNNTVMVHIRRLREKMMEPPRNPKFIKTVWGVGYKIEE 229 >gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] Length = 238 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 17/235 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E + + G +E + + I+LD+ L + G++ Sbjct: 5 KILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVMLPGMDGYQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +LS + DKV GL+ GADDYI KPF+ ELVAR+ A++RR Sbjct: 65 VCTEIRKQSNV-PIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRCNS 123 Query: 122 HAQSLIVTGDLSVNLD--------------AKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + + + TV ++G + + KE +++ L+ R N Sbjct: 124 RTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASRPNQ 183 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+E L+ L+ + + +DV I +LR+KL++ I TVWG GY Sbjct: 184 VFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLTDKYNWS--IFTVWGIGYKFE 236 >gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 237 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++L L+ E F++ G G+ + + +DA+ILDL L I G E Sbjct: 6 RILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 66 ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L L ++ ++ V + + LT +E+ ++ + ++ L Sbjct: 126 MSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 N ++ + E ++ I +LR KL I TVWG GY ++ Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGYKFAAAPQE 237 >gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD A+ ++ L +E V G E D I+D L + G ++ Sbjct: 4 VLIVDDDPAILEILQAYLVAEGHTVLSASDGFGAREGL--PRADLAIIDWMLPGVSGMDL 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R R A + P+ +L+ EDK+RGL G DDY+ KPF+ E++AR+RA++RR Sbjct: 62 VREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGVR 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I GDLS++L + T + G + L+ E+ ++ L+ T+E L ++ Sbjct: 122 EEVSI--GDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWGSD 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++DV I LRKKL + + +IETV G GY RE Sbjct: 180 FLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRFREE 221 >gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ ++ + L+ E F V G +E+ K D +ILD+ L ++ GFEV Sbjct: 6 ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ DK+ GL+ GADDY++KPFN ELVAR++AI+RR+R Sbjct: 66 CKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRTRHQ 125 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G++ V+ V + I L +E++++ +L+ L++E L + Sbjct: 126 THEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLEKAW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL+++ IETV G GY L Sbjct: 186 GFDFYGQTRTVDVHIAQLRRKLADSGVT---IETVTGVGYKLV 225 >gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 238 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+ ++ + L+ + V ++ G D + + D ++LDL + + G EV Sbjct: 11 VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLMMPGLDGIEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +L+ + D+V GL+ GADDY++KPF+ ELV RIR+++RR+ Sbjct: 71 CRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAPQ 130 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL+ + D + E G + LT +E+ ++ L ++ L+ ++ Sbjct: 131 DRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 R + + V + +LR+K+ + I TVWG GY +A Sbjct: 191 GWRF-GDQSTVTVHVRRLREKIEDRPAQPRRIVTVWGVGYRYEPSA 235 >gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium limosum KIST612] gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium limosum KIST612] Length = 239 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL++D+ + +E L+ E F V + G++ + CK D +ILD+ L D+ G Sbjct: 8 RILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIMLPDMDGI 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV RA+R PV LS + DK+ GL SG DDYI+KPF+ +ELV R++A +RR Sbjct: 68 EVCRAIR-EFSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126 Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L +++D V G + LT +E+ ++ L+ ++K+ Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I V I LR+K+ I TV G GY + Sbjct: 187 YEQVWGELSAVCDNTIMVHIRHLREKIEKDPSRPALILTVKGLGYRM 233 >gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 226 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D I+LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLRARSTV-PVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T G + ++++ V V G+++ L KE++++E+ LT+ ++ + Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFEP 226 >gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD A+ S+E L+ + ++V G + + DA++LD+ + + G Sbjct: 1 MRILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEPNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV RALR A TP+ +L+ + D+V GL +GADDY++KPF EEL AR+RA++RRS Sbjct: 61 EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEELRARLRALLRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L + ++L VE G R+ LT E ++EL L++ ++ Sbjct: 121 AQSEVLTFAD-VRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 P+ + V+I LR KL GG I+TV G GYVLRE Sbjct: 180 YDFGPQSNALWVYISYLRGKLEAD-GGARLIQTVRGLGYVLREE 222 >gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W] gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W] Length = 242 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 135 NQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ ++ +++ K F V GE +E + ILD+ L + GF+ Sbjct: 3 KVLIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVENPIVTILDVMLPGMDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR + +L+ S DK+ G GADDY+ KPFN +EL+AR+ A++RR Sbjct: 63 TCEILRREFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALLRRIGL 122 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S G+ ++ A V + LT KEY ++++ + L + LN + Sbjct: 123 QSDSKNEVLVSGEFKIDEGAMKVYRSEQELELTPKEYMLMKIFIENQGKALNRNELLNLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR+K+ + YIETVWG GY R+ Sbjct: 183 WGYSYPGDAKIVDVNIRRLREKIEENSSKPKYIETVWGVGYRWRKE 228 >gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ + + L++ + V G DG+ + + D ++LDLGL IPG Sbjct: 1 MAILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGLPGIPGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + S PV +L+ ++ D+V L +GADDY+ KPF+ EL+AR+RA +R Sbjct: 61 EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLRGGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + ++L A+T V+G ++L+ +E+ ++E+L ++ L+ ++ Sbjct: 121 QERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++V++ +LR+KL + I+TV G GY L + A+ Sbjct: 181 YDFDGASNVVEVYVSQLRRKLGS-----ERIQTVRGAGYRLGDGAR 221 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E K D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGKSG---EYIKTIYGVGYKL 221 >gi|170745397|ref|YP_001766854.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658998|gb|ACB28052.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 233 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 171/224 (76%), Positives = 198/224 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ++A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDVSVAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREE 224 >gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V ++G LT KE+ ++ELL+ K L+ Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] Length = 242 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E ++ + + GE + + + D I+LDL L + G++ Sbjct: 16 KILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDGYQ 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 76 VCREIRH-TSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + DL++NL +V R+ + KE +++ L+ N T+E L Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 195 DHIWGYEYIGDTRTVDVHIKRLREKIKDHDKWS--IATVWGIGYKFE 239 >gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032] gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032] Length = 235 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D+K + I +L E + V DG+ + D +ILD+ L D G+ Sbjct: 7 KVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIMLPDGEGY 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS DK+ GL G DDYI+KPF+ +E+ R++A +RRS Sbjct: 67 DICKQIR-DVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSS 125 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S G +N + G I LT KE ++ N ++KE Sbjct: 126 YLQPSQEEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I +LR+K+ ++ ++ TV G GY Sbjct: 186 TVWGEDFFGSDNTVMVHIRRLREKIEHSPSTPEFLVTVKGLGYKFV 231 >gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E ++V ++ GE+ ++ + +F+ I++D+ + + GFE Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ L+ S +DK++G SG DDYI+KPF+ EL R+ AI++R Sbjct: 64 AIKRIR-RLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I DL +NL T+ + + I LT KE+ ++ LL+ K Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KLS+ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ + V+ GE+ IE D I+LD+ L + GF Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ L+ + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 65 VCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + ++ G L V+ + + V G RI LT E+ ++ELL + Sbjct: 124 TVSVAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183 Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] Length = 241 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ +L + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKDVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240 >gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] Length = 225 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 137/228 (60%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K+L I L+ E++ V G+D ++ E+DAIILD+ L ++ G+ Sbjct: 1 MRILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TPV L+ SIED+V+GL SGA+DY++KPF EEL+ARIR ++R+ Sbjct: 61 EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ +L+V+ ++ +V I L+ +E+ ++E + + L+K+ H+++ Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRDDIPIKLSKREFTILEYMIRNRGKILSKDKIEQHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +I+V+I LRKK+ I ++G GY+L+ +DE Sbjct: 181 YDYEGGSNVIEVYIRYLRKKIDADFS-PKLIHNIYGVGYILK--VEDE 225 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + L L+ E + V G+DG+ + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++ + V G I LT +E+ ++ + ++ L Sbjct: 126 LSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 N ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKLVAPGP 236 >gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 231 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL EDD L ++ L++E + V G+ + +D I+LD+ L GF+ Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR ++I P+ +L+ + DKV GL+SGADDY++KPF EL+ARI A++RR+ Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++V+ V G + L+ +EY+++ L T+T+E L + Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + +DV + LR+KL Y++TV G GY L + Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 228 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + L+ E + G++G+EL + + D I+LDL L + G V Sbjct: 8 ILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLMLPKMDGLAV 67 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L + P+ +L+ D++ G + GADDY+ KPFN EL+ RIRAI+RR Sbjct: 68 CRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRRQV 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +SV+ A V V G + LT E+++IE L T+E L ++ Sbjct: 128 MVESNPVLTRHGVSVDPAAHKVTVLGQDVELTATEFRLIEDLLRNAGRVRTREELLAAVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + E + +D I +LR KL +AA IETV G GY Sbjct: 188 GYQFEGYARTVDTHIRRLRNKLGDAA---EIIETVRGVGYR 225 >gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 232 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ +A I + L+ E ++V G++ I + D +ILD+ + + G+EV Sbjct: 6 ILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKMDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 66 TRQIRAQYHM-PIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLML 124 Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q G + + + +TV V +I LT KE+ ++ LL+ + E Sbjct: 125 NQPKAEDNKSVLEIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENIF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LRKKL I+TVWG GY Sbjct: 185 QQVWAEDYYEGRNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L +NV GE+ +E + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S I +L ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 TSTSGIPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234 >gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 231 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+++LA + +L+ E F V V G + + + D ++LDL L + G +V Sbjct: 4 ILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKRLR-KVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEP 122 Query: 123 AQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G + ++++ TV V G I + KE+ ++E L LT+ Sbjct: 123 QVADYEEEGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ + K +DV + +LR K+ ++ TV G GY + Sbjct: 183 IDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSSPKHLVTVRGLGYKFED 231 >gi|229084208|ref|ZP_04216492.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699086|gb|EEL51787.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 233 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLI+D+ A+ + +L+ E F ++ E + L + FD +ILD+ L GF+ Sbjct: 6 ILLIDDETAILQLLTTILQKEGFSHITTATSAEKALLLVEQKHFDLMILDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ L+ SS DKV G GADDYI+KPFN E+VAR++A +RR Sbjct: 66 ICPIIR-QKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I G + ++ A ++V G + + + +Q++ N +KE Sbjct: 125 QTPQTIKEYTLSFGRVQIDKHAAELQVDGEIVECSAQLFQLLLFFCEHPNYVFSKEEIYE 184 Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I KLR+K+ YI+T+ G GY Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPKYIKTIRGLGYKFV 231 >gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + V G+ G L +DA+++D L G Sbjct: 17 MKILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRMLPKRDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TP ILS + ++D+V GL++G DDY++KP+ EL+ARI R+ Sbjct: 77 SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL ++ + V G I L +EY+++E L +T+ M L H++ Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ G ++TV G GY+++ Sbjct: 197 DYHFDPQTNVIDVHISRLRSKIEKDFGEP-LLKTVRGAGYMMK 238 >gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 245 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD + S+ L L + V G G+EL D +++DL L DI GFE Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 R LR P+ +++ + D V GL++GADDY++KPF +EL ARIRA R Sbjct: 80 CCRRLR-RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G A +I DL + DA V G +HLT E++++ L+ + ++E L + Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+DV + +LR K+ + TV G GY ++ Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] Length = 242 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I + L+ E F V+ D GE+ +E+ + ILD+ + + G E+ Sbjct: 16 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ N T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614] gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L++E F V G +G+ + ++D I+LD+ L + G+ Sbjct: 1 MRVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR A + P+ +L+ D+ L GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 DVCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDL+++ + V G I LT +E+ ++ L L+K + ++D Sbjct: 121 PKRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V++ LR+K+ + G I+T+ G GY L Sbjct: 181 LNYDGDENVVEVYVGYLRRKI-DQPFGTTTIQTMRGAGYRL 220 >gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437] Length = 249 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD ++ I L SEN+ V V + G DGI K ++ A+ILDL L D+ G + Sbjct: 17 HILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLMLPDLDGID 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV IL+ D + GL +GADDY++KPF+ EL AR++A +RR Sbjct: 77 VLRHIR-ESRNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLY 135 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+L +N ++ + ++ LT KE++++EL+ +K Sbjct: 136 LNAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLF 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + + V I +LR+K+ Y++TVWG GY L +E+ Sbjct: 196 RSVWGDDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRLHGGGGEES 249 >gi|315497642|ref|YP_004086446.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315415654|gb|ADU12295.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 233 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 163/226 (72%), Positives = 192/226 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K++TPV ILSG S IE KV+ L GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRQLRVGKVNTPVMILSGTSEIETKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVAGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ A G +YIETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVANDGNSYIETVWGRGYVLRDPQE 226 >gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] Length = 242 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 9/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F V+ G ++L + E D ++LD+ L D+ GF Sbjct: 8 RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R TPV L+ +DKV+GL G DDY++KPF+ EE+VARIRA++RR+ G Sbjct: 68 VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTSG 127 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GDL ++ D+ V G + L+ E++++ L L L+K L+H+ Sbjct: 128 SLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDHV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKL------SNAAGGKNYIETVWGRGYVLREN 224 + + I++ +I LR+K+ I T G GY+LR Sbjct: 188 WQYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLLRAP 239 >gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 237 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++EDD ++ + ++L++E+F V V G+ G+E+ ++ IILDL L + G+E+ Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A STP+ +L+ + DKV GLQ GADDY++KPF E +AR+ A++RR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q L++ + ++ + LT KE++++ +L+ TL +E L ++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ID I +LR+K+S G +++TVWG GY L D Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236 >gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 223 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + F+V GE+ ++L + + IILD+ + + G+ Sbjct: 5 KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R P+ +L+ S D+++G G D+YISKPF+ + LVAR+ AI+RRS Sbjct: 65 ETCKTIR-KYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSN 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + ++ A V + G I L+ KE++++ + L++E LN++++ Sbjct: 124 AVTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ +YI+T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGEKG---DYIKTIWGMGYKFE 222 >gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 244 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+IED+ +A + L+ F V V G++G+ + +ILDLGL + G EV Sbjct: 13 LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPSLDGVEVC 72 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V + + + D V GL GADDY++KPF EL+ARI A++RR R Sbjct: 73 RQLRTFTNAYIVMV-TARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPRPTP 131 Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+L+++ + V+V+ + LT E+ ++E L+ R ++E L ++ Sbjct: 132 TGESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLTEIWG 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V + LR+KL ++A +I TV G GY + + Sbjct: 192 PDWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGYRMGD 234 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232 >gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1] gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1] Length = 222 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +++ ++ L+ E F V + D G+ G+EL +D ++LD L I G Sbjct: 1 MRILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWMLPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R R TP+ L+ ++++ + GLQSGA+DYI KPF+ EEL+ RIR +R + Sbjct: 61 ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRA-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ G + ++ + V I LT KE+ ++E L KN + + ++D Sbjct: 120 KGAKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDVFI LRKKL + ++YI+T+ G GY+ +E Sbjct: 180 IHFDYNTGVIDVFINSLRKKL-DLQKDEDYIQTIRGVGYIAKE 221 >gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 238 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ L+ +++ L+ + G ++L + D ++LDLGL + G EV Sbjct: 12 VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR V +L+ + DK+ GL GADDY++KPF+ ELVARI+ ++RR R Sbjct: 72 CRQLRTFSDCY-VLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G L+++ ++ VE+ + LT E+ +++ L+ L + + Sbjct: 131 STGATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDA 190 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++DV I LRKKL + +++TV G GY + Sbjct: 191 VWGEDWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD +ILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 69 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++IEDD ++ ++L L E ++V GE G+ L K D +++D+ L + G E Sbjct: 4 KIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-----IV 116 V+R +R P+ ILS DKV GLQ GADDY+ KPF +EL+ARI A Sbjct: 64 VVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRRS 123 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G +++ G + ++L+A+ V G + LT +EY ++ + ++E + Sbjct: 124 RGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + +D FI +LR + + A ++ETV G GY Sbjct: 184 NVWGSRYFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGYRFNP 230 >gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630] gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile CD196] gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile R20291] gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08] gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07] gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile] gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile CD196] gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile R20291] gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08] gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07] Length = 222 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + I L +E + V + G +GI+ K +D +ILD+ + ++ G+ V Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + +R S P+ L+ ++ D+++G DDYI+KPF+ L+ R+ AI R ++ Sbjct: 65 CKMIR-KSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 IV L ++L+ E+ G I LT KE+ +++ L + +T+E L+ ++ Sbjct: 124 INDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +I+D I +RKK+S YI+TV G GY L ++ Sbjct: 184 DYYGDTRIVDAHIKNIRKKISL-----PYIKTVKGIGYTLEKD 221 >gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 234 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ ++ + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVRAKANV-PIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL VNL +V + + I + KE +++ L+ N T+E Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV + +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGYKFE 230 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ + V+ G + + L + D +ILD+ L D+ GF Sbjct: 25 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A I P+ L+ + DKV GLQ+G DDY++KPF EE+VARI AI+RR++ Sbjct: 85 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 144 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++ + V G I L+ E++++ L + + ++K L+H++ Sbjct: 145 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 204 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG----KNYIETVWGRGYVLRENAK 226 + E + I++ +I LR+KL + I+T G GY+LR+ + Sbjct: 205 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDPNE 255 >gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] Length = 234 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ ++ + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVRAKANV-PIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL VNL +V + + I + KE +++ L+ N T+E Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV + +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGYKFE 230 >gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto BEST195] Length = 230 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 224 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K A I L++E+F V V+ G + + L FDAI+LD+ L G Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR K TPV +LS + ++V GL +GADDY+ KPF EL+AR+R+I RRS Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DL+++ + + G LT +EY+++E L + L ++D Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P ++DV+I +LR+K+ + + TV GYV++E + Sbjct: 181 YDFDPGTNLVDVYIKRLREKV-DEGFEPKLLHTVRNVGYVMKEQS 224 >gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 226 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD L +E L E + V V + G DG+ L + + D +ILD L + G + Sbjct: 4 HILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLSGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR + TP+ +L+ I D+V GL SGADDY++KPF+ EEL+AR++A +RR Sbjct: 64 ICLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVNP 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + D+S++ V R+ LT KE+ ++E L +T++ L ++ Sbjct: 124 EEPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYI-ETVWGRGYVLRE 223 E II+V+I LR KL A I +TV G GYV+R+ Sbjct: 184 DFMGESNIIEVYIRALRLKLE--ASNPQRILQTVRGVGYVIRD 224 >gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 239 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 6/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ A+ ++ +L E F V E+ I + K + D ++LD+ + + GFE Sbjct: 6 ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 A+R P+ L+ +S DK+ G SGADDYI+KPFN ELVARIRA ++R+ Sbjct: 66 ACAAIR-EYSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKRTYK 124 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + V G + + + Q+++ N L+K+ Sbjct: 125 QEDGRSSTPYAYEHFTFYPQFAELIVGGKVVSCSAQLLQLLQYFCDHPNVVLSKDQIYEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + + V + KLR+K+ A YI TV G GY N ++ Sbjct: 185 VWGYPSYGDNNTVMVHVRKLREKIERDASDPEYIVTVRGLGYRFIPNPEE 234 >gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ ++ L +E + V V+ G +G+EL + + +D IILD+ L + G Sbjct: 1 MRILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMMLPRMDGG 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R PV +L+ S+EDKVR ++GADDY++KPF EL+ R +A++RR Sbjct: 61 EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S + G+L ++ + V+ G RI LT KEY ++E L L++ M + H++D Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I+DV++ LR K+ + I TV G GY++R + Sbjct: 181 QSFDGITNIVDVYVRHLRAKV-DDGHIIKLIRTVRGSGYMIRAGGE 225 >gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 240 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+++LA + L+ + + V G ++ + E D ++LDL L + G E Sbjct: 14 RVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDGVE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A V +L+ + DK+ GL GADDY++KPF+ ELVAR+ A+ RR R Sbjct: 74 VCRRLR-AFSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAMRRRPRQ 132 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G L V++ A+ + + LT E+ ++ +LS R N L++ + Sbjct: 133 PRIRPEPALRRFGPLEVDVPAREARLDEVPVPLTRTEFDLLAVLSGRPNVALSRAQLITA 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + +++DV I LR+KL + +I TV G GY +R + Sbjct: 193 VWGDGWVGDERLVDVHIGHLRRKLGDGPARPRFILTVRGIGYRMRPQS 240 >gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ ++ + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVRAKANV-PIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL VNL +V + + I + KE +++ L+ N T+E Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV + +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGYKFE 230 >gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025] gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans] gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025] Length = 235 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++ G + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEVR-KNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 I+ GDL + DA + +G + LT +E++++ L+ +T+ Sbjct: 122 IESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 243 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E + E D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGASGIPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234 >gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 255 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 14/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ + + L + V V G + + + + D I+LD+ L + G+ Sbjct: 15 KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +LS + I D++ GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 75 VCRELR-KLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDD 133 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ D+ ++ + + V +G R+ LT E+ ++ELL + + + Sbjct: 134 SPNALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAE 193 Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRE 223 L L+ R +++++DV++ +LR KL I TV G GY L++ Sbjct: 194 ILEELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGYTSQRLKD 248 >gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 227 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L+++DD A+AH + LK+E F V V E ++ + D ++LD+ + Sbjct: 1 MKASVLIVDDDAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVMMPGRS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF++ R +R + P+ LS S ++K+RG G DDYI+K + E+VAR++A++RR Sbjct: 61 GFDLCRHIR-ETSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRR 119 Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S+ G L ++ A V ++G + T +E+ ++ + T+E Sbjct: 120 CQKEKPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + + + V I ++R+K+ +YI TV G GY Sbjct: 180 RFWG--EIGDRQTVTVHIRRIREKIERDPADPHYIITVRGTGYRFE 223 >gi|134097367|ref|YP_001103028.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009075|ref|ZP_06567048.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909990|emb|CAM00102.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 231 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L+ + V + G+ ++ DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLQFNGYQVELAADGQQALDWLAAQRPDAMVLDVMMPRVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVARRLRSTGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL ++ + V I LT E+ ++ELL LT+ Sbjct: 121 PSDVDREDRPEPLRFSDLELDPGTREVRRGERPISLTRTEFALLELLMAHPKQVLTRSRL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ ++V+I LR+K + A G I TV G GYVLRE Sbjct: 181 LEDVWGYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRE 228 >gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 247 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 21 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 140 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247 >gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18] gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 228 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++AL+ + +L E F V D G D + + D ++LD+ L + G E Sbjct: 4 KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 VCRKLR-EVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + +++D V V G I + KE++++E+L +T+ + Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV I +LR K+ + Y+ TV G GY Sbjct: 183 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 227 >gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 243 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + ++ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243 >gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T] gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 257 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 11/246 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L + L+ + F+V +D I+LDL L G Sbjct: 8 RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLMLPGEDGLS 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A+ PV +L+ D++ GL+ GADDY++KPFN ELVARI+A++RR Sbjct: 68 ICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQPH 127 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G + VNL + + G I LT E+ ++++L L+++ Sbjct: 128 TLPGAPTPEDEIVAFGRVKVNLGTRVLVRDGEEIQLTTGEFSLLKVLLTHPRQPLSRDKL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA----KDETC 230 + + IDV + +LRK + + YI+TVWG GYV + +D Sbjct: 188 MELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVFVPDEQKGGEDNGG 247 Query: 231 EYLETA 236 + A Sbjct: 248 QPDTPA 253 >gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101] Length = 253 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L + V G++ +E + + D ++LD+ + + G+ V Sbjct: 16 ILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDGYGV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 76 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKD 134 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 135 SVAGIPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEILK 194 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 195 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 242 >gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + ++ L E F+ ++ + E G+++ + + D +ILD+ L D G+E Sbjct: 5 KVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGWE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ LS DK+ GL+ GADDYI+KPF+ E+VARI+A++RR Sbjct: 65 FCQKIRPEYDL-PIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNK 123 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G+L +N + V QG +I LT KE+ ++ L+ +E L ++ Sbjct: 124 AAENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +V+ +D I LRKKL + A +ETVWG GY + +E Sbjct: 184 GYDYYGDVRTVDTHIKSLRKKLGDKAAEA--VETVWGVGYKFDDQKLEE 230 >gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 243 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L L+ E + VY D G D + L D I+LD+ L + G + Sbjct: 5 KILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQLNGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + PV +S S D + GL G DDY++KPF+ +LVAR++A +RR Sbjct: 65 VCQQIR-EITAVPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRRQSL 123 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ L ++L A+TV V + L+ KE++++ LL+ + N Sbjct: 124 QSEQRDKPVRDQLVFDGLIIDLTARTVRVGDQYVSLSVKEFELLALLATQPNRAFQLANL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + + + V + LRKK+ +I T+ G GY +E Sbjct: 184 YEAVWGVNSIGDTRTLMVHMSNLRKKIEPDPTNPRWIVTLRGVGYKFNVEEGNE 237 >gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 358 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++ + V+ G + ++ + D I+LDL L + G E Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLMLPGLSGLE 192 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ ++ +D + GL GADDYI+KPF+ +ELVAR+ ++RR + Sbjct: 193 VCKKIR-DSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQP 251 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L + D K V QG I LT EY ++ LL+ ++E L+ + Sbjct: 252 EYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLDAV 311 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ID I +R+K+ + +I T +G GY Sbjct: 312 KGLDFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGTGYRF 354 >gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1] gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1] Length = 223 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K + + L S + V+ G + I++ K D ++LD+ + + G Sbjct: 1 MNILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R P+ +L+ + +D+V GL+ GADDY+ KPF+ +EL+ARI A +RRS+ Sbjct: 61 EAAQEIRT-FSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ +I +L+V+L V+V G ++LT KE+ ++ LL + ++E L Sbjct: 120 GYKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ E + +D I LR KL A Y++TVWG GY Sbjct: 180 DQIWGFESEGTARTVDTHIKTLRLKLKAAGS---YVQTVWGVGYKF 222 >gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 228 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +++DDK + ++ + E F VY G +G+ L + D +LD+ L + GFE Sbjct: 4 RIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQLDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +L+ DK+ GL+ GADDY+ KPF+ E+VAR++AI+RRS Sbjct: 64 ICRKLRKEGNI-PIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRRSGK 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I G L+++ V++ + LT E++++ LL+ ++ + H+ Sbjct: 123 GTEDTSDVITAGRLAIDRTRHVVKIDDIPLELTPTEFKLLALLASNPERVFSRLQIIEHI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +D + LR+KL +A YI+TV+G GY + Sbjct: 183 QGYSFEGYERTVDAHVKNLRRKLGDA----QYIQTVYGIGYKFLPAEAE 227 >gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] Length = 232 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +EL LK+EN+ +Y + + D ILD+ + + GF Sbjct: 4 KILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVMMPGMDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K + PV +L+ DK+ GL GADDYI+KPF+ E+VAR++A +RR Sbjct: 64 LCAKIR-DKYTFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLRRYTC 122 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + L ++ D T + G ++ LT E+ ++ LL ++ E Sbjct: 123 YNEGRQKQNSAVIELHGLVIDKDTHTCSLYGKQLPLTPTEFSILWLLCENCGKVISSEQL 182 Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + E + V I ++R+K++ A +I+TVWG GY + + Sbjct: 183 FHEIWGEKYFESSNNTVMVHIRRIREKMNEPARNPKFIQTVWGVGYKIEK 232 >gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1] gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F V V + G+ + + I+LDL + G Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241 >gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] Length = 233 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ +++ LK + F+V D G+D + L Y+ DA ILD+ + + GF Sbjct: 8 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR A P L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 127 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I D++++ D V G + L+ E++++ L + L+K L+H+ Sbjct: 128 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ ++ LR+K+ + I+TV G GYVLR+ Sbjct: 188 WNYDFGGDGNVVESYVSYLRRKI--DKEEPHLIQTVRGVGYVLRKP 231 >gi|329849938|ref|ZP_08264784.1| cell cycle transcriptional regulator ctrA [Asticcacaulis biprosthecum C19] gi|328841849|gb|EGF91419.1| cell cycle transcriptional regulator ctrA [Asticcacaulis biprosthecum C19] Length = 233 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 163/224 (72%), Positives = 192/224 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K++TPV ILSG S I+ KV+ L GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRQLRVGKVNTPVMILSGTSEIDTKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIRTGDIVVNLDAKTVEVSGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+ AA G +YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVAADGNHYIETVWGRGYVLRDP 224 >gi|312113706|ref|YP_004011302.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218835|gb|ADP70203.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 231 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 165/230 (71%), Positives = 195/230 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELML SE FNV+ TDLGE+G++L K Y++D I+LDLGL DI G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLLSEGFNVFQTDLGEEGVDLGKIYDYDIILLDLGLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRV+KI TP+ ILSG ++DKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRALRVSKIKTPILILSGSGGVDDKVRGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG L VNLD KTVEV G+R+HLT KEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGSLIVNLDTKTVEVDGNRVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A G++YIETVWGRGYVLR+ +++ Sbjct: 181 GIDEPELKIIDVFICKLRKKLATANTGQHYIETVWGRGYVLRDPKEEQAA 230 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 15 RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR + P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 75 VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 239 >gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator, winged helix family protein [Gemmata obscuriglobus UQM 2246] Length = 224 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD A + L+ F V + G+DG+ L ++ ++LD+ L G+ Sbjct: 1 MKVLIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR A TPV L+ ++ D+VRGL+ GADDY+ KPF E +AR+R+++RR Sbjct: 61 SVLAALRAAGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V+ G ++ LT KE+ +I L++ R L++ + ++D Sbjct: 121 DRRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++DV + +LR KL + I TV G GYVL E Sbjct: 181 MNFDSESNVVDVHVRRLRAKL-DDPYPTKLIHTVRGVGYVLEE 222 >gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220 >gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273] gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273] Length = 247 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I + L+ E F V+ D GE+ +E+ + ILD+ + + G E+ Sbjct: 21 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L+++ +N T E Sbjct: 140 NQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247 >gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 253 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 12/239 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L + V G + +E + D ++LD+ + + G+ V Sbjct: 16 ILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDGYGV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 76 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 134 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 135 QVAGIPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 194 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAKDETC 230 ++ + +++DV I +LR KL + I T G GY + + E Sbjct: 195 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVDPVAPEGA 253 >gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 223 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 224 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++++ + V V G + LT +E+ + +L ++ L Sbjct: 121 KKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 222 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L + + L+ E F+V + G G+++ + D +ILD+ + ++ G+E Sbjct: 8 RILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGWE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ + +D V GL+SGADDY++KPFN +EL ARIRA++RR Sbjct: 68 VCRRLR-EFSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126 Query: 122 HAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G + + + V V+G + LT EY ++ LL+ L E L ++ Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V+I LR+K+ + T WG GY L Sbjct: 187 HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRLAP 229 >gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 223 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L I LK N++V GE ++ + E+D II D+ + I G+ Sbjct: 1 MKILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LRV STPV +L+ S++DK+ GL SGADDYI KPF +EL+ARIR ++RR+ Sbjct: 61 ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V I LTGKEY+++E L K +++E LNH++D Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E IIDV + +RKKL + K I T G GY ++E+ Sbjct: 181 YDYEGVSNIIDVIVKNIRKKL-DVGSKKPIIHTKRGLGYFVKED 223 >gi|172058932|ref|YP_001815392.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991453|gb|ACB62375.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 225 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDDK LA + L L+ + V V G + IE C+ + +D ++LD + G Sbjct: 1 MRILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHKSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR + + +L+ + D V GL SGADDY+ KPF EL+AR+RA+ RR + Sbjct: 61 EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + +L +++ +T+ G + LT +E++ + LL R + +E+ + ++ Sbjct: 121 KAFVSTVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +D + +RKKL +AAG I+TV G GY L Sbjct: 181 IGADITDNALDALVRLVRKKL-DAAGAPALIQTVRGFGYRL 220 >gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 223 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVN 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++++ + V V G + LT +E+ + +L ++ L Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 221 >gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 224 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L + L+ E ++V GE+ + + E+D +ILD+ + + G Sbjct: 1 MRILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV +L+ SI+D+V+GL +GADDY+ KPF +EL+ARIR ++R+ Sbjct: 61 EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL + + V IHL+ KE+ ++ + L++E H+++ Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +IDV+I LRKK+ + T+ G GYVL+ + Sbjct: 181 YDYSGESNVIDVYIRYLRKKIDEGHSH-KLLHTIRGVGYVLKVDV 224 >gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 256 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ I++ LK + F+V D G+ +E+ + Y DA ILD+ + + GF Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR A P L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I D++++ D V G + L+ E+Q++ L + L+K L+H+ Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ ++ LR+K+ I TV G GYVLR+ Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVLRKP 254 >gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 225 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 6/224 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+++LA + +L+ E F V G + + D ++LDL L + G +V Sbjct: 2 LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 62 KQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 120 Query: 124 QSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 121 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 181 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 224 >gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 128/228 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ LAH++ L+ + + V GE G EL E+D IILDL L + G Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR + IL+ E++V GL +GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q L+ DL ++ +TV + R++LT KE+ ++ L + +T+EM L H++D Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G P + V I LR+KL + YIETV G GY L + E Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLGNAGESE 228 >gi|49474504|ref|YP_032546.1| cell cycle transcriptional regulator ctra [Bartonella quintana str. Toulouse] gi|49240008|emb|CAF26423.1| Cell cycle transcriptional regulator ctra [Bartonella quintana str. Toulouse] Length = 233 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 164/227 (72%), Positives = 194/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDKA SIELMLKS NFNVY+TDLGE+G +L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKATTQSIELMLKSANFNVYITDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM++IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLDAKTVEV G +HLT KEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIVTGDLTVNLDAKTVEVAGRPVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEEVSSSANYIDTVWGRGYVLRDPVEE 227 >gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 236 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 120/235 (51%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ + + L+ E + VY G +G ++ ++ D IILDL + G+E Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 63 LCGEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A +I DL + + V V + + LT KE++++ +++ ++ Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR+KL ++I TVWG GY N ++E+ Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRNES 236 >gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Ralstonia solanacearum CMR15] Length = 228 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG+ L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +V+++LR A + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + I+TV G GYVL + Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-HPKLIQTVRGMGYVLEDPE 225 >gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E + + GE+ + + ++ + ++LDL L + G++ Sbjct: 6 RILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + PV +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELR-SGSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + DL VNL +V GH + + KE +++ L+ N T+E Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 QLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHTNWA--ITTVWGIGYKFE 232 >gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 236 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + + G + + + + + D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEIR-KTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G+L + DA + G + LT +E++++ L+ +T Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGIGYYMK 233 >gi|309790007|ref|ZP_07684582.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227950|gb|EFO81603.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 228 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D + + + + F G ++L + D IILD + ++ G E Sbjct: 4 RILIVDDVREIVQGLAAYFRQAGFETLAAYDGRSALDLARRERPDLIILDWMMPELDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ D + GL+ GADDYI+KPF E+VAR RAI+RR+ G Sbjct: 64 VCRQLRRESSV-PIIMLTARVEETDTLIGLELGADDYIAKPFRAREVVARARAILRRASG 122 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S++ G +S++LD T EV GH + LT E+ ++ L L++ L+ Sbjct: 123 ALAPPSMVRGGGVSLDLDRHTTEVAGHTVELTPTEFALLLALMRNPGRPLSRAQLLDAAQ 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LR+K+ I TV+G GY + Sbjct: 183 GDAFEGYERTIDAHIKNLRRKIEADPANPRRILTVFGVGYKFVD 226 >gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 259 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD ++ L L+ F V G G+ + D I+LD+ L + G + Sbjct: 37 RVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLDGLQ 96 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + P+ +L+ + D V GL+ GADDY+ KPF+ ELVAR+R++ R Sbjct: 97 VCREIR-RSNAVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRRAVA 155 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++ A GH + LT E++++ L+ R T+E+ L +++ Sbjct: 156 APEPGPLRIGRLEIDPGAFVARRDGHELPLTATEFRLLLELARRPGQVFTRELLLERVWE 215 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++DV + +LR K+ + I TV G GY L Sbjct: 216 QGYLGDSRLVDVAVQRLRAKVEDDPASPRLIRTVRGAGYKL 256 >gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ +++ V+ GE+ +E K Y D I+LD+ + G+E Sbjct: 4 KILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIMMPGKNGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R +S P+ L+ D V+GL SG DDYI KPF+ +L ARI A +RR + Sbjct: 63 VCNDIR-DIVSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKR 121 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + ++S+NL + V G + LT KE+ +IE LS+ +KE Sbjct: 122 NTNNSEKANLYFKNISINLRNREVYCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + + + K+R K+ N + YI TVWG GY + Sbjct: 182 VWGYDAEGDSASVAEHVKKIRHKIQNFDPEEEYISTVWGVGYKWEK 227 >gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603] gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621] gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621] gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603] gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 218 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ + + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ VE G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|119513415|ref|ZP_01632446.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119461935|gb|EAW42941.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 241 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 110/224 (49%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I+ L + + V + G+ + L + + D +ILD+ L D+ GF Sbjct: 7 KILVVDDDPAVRNLIQRFLIKQTYQVEAAEDGKTALALFEQFNPDLVILDVNLPDVIGFN 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + ++ V +L+ + DK+RG GADDY++KPF EL R+ AI+RR R Sbjct: 67 LCQEMQSRNGVF-VLMLTSRADEADKIRGFSKGADDYLTKPFGLGELEVRVGAILRRQRI 125 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V + I LT E+ ++ L+ + + + Sbjct: 126 VTTAEQKRLVFEKLMIDPARREVALNNQVIPLTALEFDLLHFLASHPGRVWRRAELIQEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + +++DV I ++RKK+ I+TV G GY Sbjct: 186 WDYEYVGDQRVVDVHIGQIRKKIEIDVSQPALIQTVRGVGYKFE 229 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ F V G++ ++ D ++LD+ L D+ GF V Sbjct: 17 LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTV 76 Query: 63 LRALRVAKIST------PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI- 115 +R LR PV L+ DKV+GL GADDY++KPF+ EEL+ARIRAI Sbjct: 77 VRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAIL 136 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R +V DL+++ A V G + L+ E++++ L ++K L Sbjct: 137 RRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQIL 196 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 +H++ ++ I++ +I LR+KL + G I TV G GY LR Sbjct: 197 DHVWAYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYALR 244 >gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium kansasii ATCC 12478] Length = 227 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DAESSDGILESGPVRMDVERHVVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis L1-82] gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis L1-82] Length = 224 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI L ED++ L I L + ++V G I++ E+DA+ILD+ + GF Sbjct: 1 MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR +TPV L+ ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S Sbjct: 61 TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DLS++ + V G I L+ KEY M+E + L++EM +H+++ Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E ++DV+I LRKK+ + K I TV GRG+++RE Sbjct: 181 FDYEGGTNVVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMREE 223 >gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 229 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + D +ILD+ + ++ GF+ Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 73 VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V + L KE++++ L + T ++E + ++ Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + +DV I +LR+K + I+T+ G GY Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYR 229 >gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032] gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032] Length = 229 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+SE F GE + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VARAIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122 Query: 122 HAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L+ G ++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 123 AAPELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 228 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED K ++ L + F+V + G G+ L + ++ D ++LDL + + G E Sbjct: 5 KILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGMDGLE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R ++ PV +L+ DK+ GL+ GADDYI KPF+ ELV RI+A++RR Sbjct: 65 VCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRRA 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L ++ +A + V G LT E++++ +L T++ L+ Sbjct: 125 GGREPKAPKAWEREGLRIDFEAHQITVDGEEATLTATEFKLLTVLISGSGKVQTRDNLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D E + +D + +LR+KL A +IETV G GY R Sbjct: 185 TVWDTHFEGYSRTVDTHVRRLRQKLGPYA---EWIETVRGVGYRFR 227 >gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 239 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + S++ A+ V G RI LT +E+ ++ + ++ L Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N ++ + E ++ I +LR K+ I TVWGRGY L + + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPDQRDA 239 >gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F+V + G +E D ++LDL L + G +V Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 64 CKQLRT-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQDA 122 Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + ++++ TV V G + + KE+ ++E L LT+ Sbjct: 123 SSEHAEEEPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + K +DV + +LR K+ + TV G GY Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQQLVTVRGLGYKFE 231 >gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ +L+ E F V V + G D ++ D ++LDL L + G E Sbjct: 3 RVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR PV I+S + DKV GL+ GADDY++KP++ EL+ARI+A++RR + Sbjct: 63 VCRALRTRGNV-PVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQD 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G + ++++ V V G I L KE++++E+L LT+ ++ ++ Sbjct: 122 VELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + K +DV + +LR KL ++ TV G GY Sbjct: 182 GADYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGYKFE 224 >gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 229 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + ML+ E F V G D + D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V +ALR PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKALRSRSAV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 ATGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + K +DV + +LR K+ + ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGYKF 227 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + + + E D +LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A PV L+ DKV GL G DDY++KPF+ +E+VARIRA++RR+ Sbjct: 69 ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++ DA V G I L+ E++++ L + N L+K L+H++ Sbjct: 129 GEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ + I+T G GY++R + Sbjct: 189 EYDFNGDASIVESYISYLRRKV-DRPEWPALIQTKRGVGYLMRTPDR 234 >gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 225 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 ++L+++D+ + + L + F V GE+ I++ + + I+LD+ + + G+ Sbjct: 5 KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R P+ +L+ +D+++G G D+YISKPF+ + LVAR+ AI+RRS Sbjct: 65 EVCRTIR-KYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSS 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q +I G + ++ A V V G + L+ KE+++I + + L++E LN++++ Sbjct: 124 TMSQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ID + KLR KL + +YI+T+WG GY + Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGYKFEVDG 225 >gi|163868751|ref|YP_001609968.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum CIP 105476] gi|161018415|emb|CAK01973.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum CIP 105476] Length = 233 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 165/227 (72%), Positives = 198/227 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A+ SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR+AKI TPV ILSGM++IEDKVRG SGADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLKTLRLAKIKTPVLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNVNYIDTVWGRGYVLRDPIEE 227 >gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 244 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 21 VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 81 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 140 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ L+ L+++ L ++ Sbjct: 141 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + DVF+ LR+KL G I TV G GYVLR Sbjct: 201 YDFDVDTNVADVFVSYLRRKLERE-GLPRVIHTVRGIGYVLRAE 243 >gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++++ I++ LK NF V + GEDG++ + + D +LD+ L I GF+ Sbjct: 3 RILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GL+ GADDYI KPFN EL+ RI+AI+RR+ Sbjct: 63 VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTAD 122 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++L ++ + I +T KEY +++L N +++ LN Sbjct: 123 ESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K+IDV I +LR K+ + +IET+WG+GY +E Sbjct: 183 LIWGYDYFGDPKLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYRWKE 229 >gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor] Length = 228 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 7 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 67 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 224 >gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 233 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 134/232 (57%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLT-DIP 58 M+IL++ED+ ++ + L LK E ++V GE+ IEL K + + +LD+ L I Sbjct: 1 MKILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+VL+ +R + + +L+ ++ EDKV GL+ GADDYI+KPF+ +EL+ARIRA++RR Sbjct: 61 GFDVLKHIRTRSQNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRALIRR 120 Query: 119 SRGHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +G+ ++N + I LT KE++++EL K +L+++ Sbjct: 121 VTSIDMVKEEVEKVHSGEFTLNFSERKFFKGEEEIELTPKEFEILELFMKNKGKSLSRDE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++ ++K++DV I ++R K+ + +Y++TVWG GY E+ Sbjct: 181 ILDRIWGKNYYGDLKVVDVNIRRIRMKIEKDSSNPSYLKTVWGYGYRWEEDE 232 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + IE + + D I+LD+ + + GFE Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A + PV L+ + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR Sbjct: 66 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DLS+N+D V + I L+ E+ ++ L L N L+K L+H+ Sbjct: 126 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 ++ + I++ +I LR+K+ N G + I T G GY++R Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 230 >gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 235 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ +++ LK + F+V D G+D + L Y+ DA ILD+ + + GF Sbjct: 10 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR A P L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 129 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I D++++ D V G + L+ E++++ L + L+K L+H+ Sbjct: 130 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ ++ LR+K+ + I+TV G GYVLR+ Sbjct: 190 WNYDFGGDGNVVESYVSYLRRKI--DKEEPHLIQTVRGVGYVLRKP 233 >gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221 >gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 229 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++++ I++ LK +F V + GEDG++ + + D +LD+ L I GF+ Sbjct: 3 RILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GL+ GADDYI KPFN EL+ RI+AI+RR Sbjct: 63 VCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRIGD 122 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q ++L ++ + I +T KEY +++L N +++ LN Sbjct: 123 EKQVKEDINKLIREPFIIDLYSQKLFKNSIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K+IDV I +LR K+ + +IET+WG+GY + Sbjct: 183 LIWGYDYFGDPKLIDVNIRRLRAKIEDNPSEPEFIETIWGKGYRWK 228 >gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+S F V+ G+ G+EL + D ++LDL L + G + Sbjct: 5 RLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGMSGLD 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + L+ + PV +L+ D++ GL+ GADDY+ KPF+ ELV RI+A+++R Sbjct: 65 VCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKRG 124 Query: 120 RGHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + T + +A VE+ G + LT E++++ L + T++ L Sbjct: 125 APFTEQEERTRWRVNGLSLDTEAHRVEIDGDEVTLTATEFKLLFELVRNRGRVRTRDQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ E + +D + +LR+K+ + AG YIET+ G GY RE Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGDYAG---YIETIRGVGYRFRE 229 >gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 235 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + ++ + + + ++V V G+ G++ + + A++LDL L +I G +V Sbjct: 14 ILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVLPNIFGRDV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ++ + PV ++S ++ + DKV L+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 74 CKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRRQKT 133 Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GD ++ T G I LT E+++++ L++++ LN ++ Sbjct: 134 SAITTYSFGDCEIDFSKMTARRGGVSITLTAHEFKLLKYFVEHAERVLSRDVLLNEVWGY 193 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P + +D I KLR+KL + Y+ TV+G GY Sbjct: 194 NSYPTTRTVDNQILKLRQKLEPESAEPRYLRTVYGAGYKFVP 235 >gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL++D++A+ ++ +LK E F + + I L + +D +ILD+ L D GF Sbjct: 6 RILLVDDEEAILQMLQTVLKKEGFVQIDTCTTAAEAIRLVEEKTYDLLILDVMLPDKSGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+ A+R + P+ L+ + DK+ G GADDYI+KPF+ E+VAR++A +RR+ Sbjct: 66 ELCGAVR-QRTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G VN++A + V G R+ + + ++ N TKE Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184 Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +H++ + + V I KLR+++ G + TV G GY L A+ Sbjct: 185 DHVWKDEYGMFDENTVMVHIHKLRQRIEENPGQPKLLVTVRGLGYKLVSPAR 236 >gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ + + L+ + V G +G+++ + D I+LDL L + G E+ Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLPGMDGMEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + + + S D+V GL+ GADDY++KPF+ ELVAR+ AI+RR R Sbjct: 65 TARLRERSDVYILML-TARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQRNK 123 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ +A+ G + LT E+ ++ L+ N L++E + ++ Sbjct: 124 TAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++DV++ +LR+K+ G N I T G GY + Sbjct: 184 ADFFGTDRVVDVYVSQLRRKIEAITGE-NVIRTARGVGYRFVD 225 >gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 224 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + ++L+ E F VY G + + + + D I+DL + ++ GFE Sbjct: 3 KILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLMMPNMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR A PV +L+ K++G Q+GADDY+ KPF EL+AR++A+++R + Sbjct: 63 LCQELR-ASYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + G L +N V + L KE++++ L+ T +++ + ++ Sbjct: 122 IASQNVQIGKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LR++ I T+ G GY L ++ Sbjct: 182 GFEGNERTLDVHINRLRQRFPEE-KTDFRITTIRGLGYRLEVDS 224 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ + VY GE+ IE D I+LD+ L + GF Sbjct: 5 RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ L+ + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 65 VCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + G L V+ + + V G RI LT E+ ++ELL + Sbjct: 124 SISVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183 Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17] gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L ++ L+ + + + GE+G L +DAI+LDLGL +I G Sbjct: 1 MRVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I T+ G GY L + + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGQD-----VITTIRGLGYSLDDPS 220 >gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] Length = 233 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A + L + F V G G+ + + ++D I+LD+ L + GF Sbjct: 3 KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +++ D +RGL GADDYI KPFN ELVAR+R+ + R Sbjct: 63 VCRELR-RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q ++ +G L + LDA V + + T +E++++ L+ N ++E Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ Y+ET+ G GY R Sbjct: 182 ERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379] gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379] Length = 223 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L I LK N++V GE+ ++ + ++D II D+ + ++ G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E ++ LR +K +TPV +L+ ++EDK+ GL SGADDYI KPF +EL ARIR ++RR+ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V G I LTGKEY+++E L K + L+++ LNH++D Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + I+DV I +RKKL + K I T G GY Sbjct: 181 YDYDGASNIVDVIIKNIRKKL-DNGTDKTIIYTKRGLGY 218 >gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42] gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ ++ +L E + N+ E+ IE K D ++LD+ + + GFE Sbjct: 6 ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMSGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 66 ACTEIR-NYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTYK 124 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S + + V G + + + Q+++ + L+K+ Sbjct: 125 REEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I KLR+K+ +YI TV G GY + Sbjct: 185 VWGYPSYGDNNTVMVHIRKLREKIEKDPSNPSYIVTVRGLGYRFIPD 231 >gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 223 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A I L+ + V + G +G++L E+D IILD+ L + G+ Sbjct: 1 MRILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R K TP+ L+ +I+D+++GL+ GADDY+ KPF EL+ RIR I+RR Sbjct: 61 QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q LI GDL ++L V G R+ LT KE+ +I LL+ R LT+ ++D Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ++DV + +LR K+ + K I TV G GYVL E Sbjct: 181 IDFESDTNVVDVHMRRLRAKV-DDPFEKKLIHTVRGVGYVLEE 222 >gi|146338575|ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA [Bradyrhizobium sp. ORS278] gi|146191381|emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA [Bradyrhizobium sp. ORS278] Length = 233 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 166/224 (74%), Positives = 198/224 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREP 224 >gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 233 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L+ F V G I E D I+LD+ L D+ GF Sbjct: 9 RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPDMNGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + LR A + P+ L+ EDK+ GL G DDY++KPF+ +E+VARI+AI R + Sbjct: 69 VTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G+L+++ D V V I L+ E++++ L L N L+K L+H+++ Sbjct: 129 ADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+K+ +A + I+T G GY+L+ Sbjct: 189 YDFNGDAGIVESYISYLRRKV-DAHSSEALIQTKRGFGYMLK 229 >gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi] gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi] Length = 239 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +E L +NV GE+ I L + + +ILD+ L + G+ Sbjct: 9 KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLPKLDGYT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR K + P+ +L+ I D+V GL+ GADDY+ KPF +EL AR+R+++RR Sbjct: 69 VCSELR-KKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEK 127 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L G+L++N + V R+ LTG E+ ++ELL L++ L+ Sbjct: 128 TSNYSSNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSLLELLITNAGERLSRAYILD 187 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++DV I +LR KL G + I T G GY+ ++ Sbjct: 188 TVWGYTPERYLDTRVVDVHISRLRSKLEIDPGKPDLILTARGTGYMFQK 236 >gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221 >gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] Length = 235 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L E + V G++ ++ + D IILD L ++ G E Sbjct: 3 KVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWMLPELEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 63 VAKEIR-KSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTEN 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S + GDL + DA + +G + LT +E++++ L+ +T+ Sbjct: 122 IETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232 >gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PTPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Rv] gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium bovis AF2122/97] gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T17] gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium tuberculosis 210] gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN R506] gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN V2475] gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis] gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium tuberculosis W-148] gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] Length = 227 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|319406806|emb|CBI80439.1| cell cycle transcriptional regulator CtrA [Bartonella sp. 1-1C] Length = 233 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 166/227 (73%), Positives = 195/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+ KI TPV ILSGM IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL+VNLDAKTVE+ GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227 >gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 227 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L++E V G + + D ++LD+ L I G E Sbjct: 6 RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL+SGADDY+ KPF +EL+AR+RA +RR Sbjct: 66 VCRRIRAESGV-PIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDD 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL +++ +V+ +G + LT E+ ++ L+ + T+E+ L ++ Sbjct: 125 VEPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 185 RHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYR 223 >gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] Length = 243 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K + I +LK E + V G++ ++ ++DA+ILD+ L GF Sbjct: 17 MRILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDGF 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ +R I TPV L+ +ED+V+GL GADDY+ KPF EEL+AR+R ++R+ Sbjct: 77 EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ +L+VN + TV I L+ KE+ ++E L K ++KE H+ Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E I++V+I LRKK+ + I T+ GY+L+ Sbjct: 197 WDFDYEGGSNIVEVYIKFLRKKIDDNFS-PKLIHTIRRVGYILK 239 >gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++DD+ + IE+ LK+E + V G + + + D IILD+ + ++ G Sbjct: 1 MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPEMDGLSFC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 +R P+ ++S DK+ GL +GADDY+SKPFN EL AR++A++RR+ Sbjct: 61 TQVR-KSSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYSQ 119 Query: 124 QSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L+++ V +G+ I LT E++++ LL+ + + E ++ Sbjct: 120 PEKGDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E K + V I LR+KL A G+ I TVWG GY + Sbjct: 180 NEPGEGSNKTVMVHISNLREKLEAALPGEKIIHTVWGVGYKIE 222 >gi|84498095|ref|ZP_00996892.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381595|gb|EAP97478.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 225 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD A++ + L+ E + V V G + +E + D ++LDLGL + G E Sbjct: 3 RVLLAEDDPAISEPLARALRREGYEVEVRADGREALEAAREN-PDLVVLDLGLPTMDGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ + D V GL +GADDY++KPF EL+AR RA++RR Sbjct: 62 VCRRLRGEGHTVPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARARALLRRGIP 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + +++ V + I LT KEY+++ +L+ + +++E + +++ Sbjct: 122 EAVPTGQVDIRV-DAESRRVFLHDEEIQLTAKEYELLRVLARNQGKVISREQLMREVWET 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 K +D+ I LRKKL + A YI T+ G G+ + Sbjct: 181 AWYGSTKTLDMHISVLRKKLGDDAMQPRYITTIRGVGFRFDPAGE 225 >gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 242 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ +E + Y D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ DKV GL+ GADDY++KPF+ ELVAR++A +R Sbjct: 64 VAREVR-QTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122 Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + I G+L + DA VE G +I LT +E++++ ++ + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +T+E L ++ +V+ +DV + +LR+K+ + + T G GY Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 + +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CKIIRQSSDVHIFML-TAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSAD 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS++ D + V+V G + +T E+ ++ L K L++E ++ ++ Sbjct: 123 NSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158] gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158] Length = 225 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I +LR K+ + I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPI-KLIHTVRGVGYVLEP 221 >gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + + + I+D+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 LCYELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222 >gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + E + V G++G+++ K F I+LD+ + + G+ + Sbjct: 8 ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMDGYTM 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 L LR + PV +L+ DK++G +G DDYI KPF+ EL R+ A + + Sbjct: 68 LCKLR-ESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKSN 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q +I D+ +N TV+ I LT KEY+++ L++ K + +M L+ Sbjct: 127 NNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELLW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I LR+KL ++ YI+T+WG GY + ++ Sbjct: 187 KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 231 >gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185] gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185] Length = 218 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 230 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + + I LK E +N+ GED I F +ILDL L I G E Sbjct: 5 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + P+ ILS D++ GL GADDYI KPF+ EL AR+++ +RR Sbjct: 65 VLRKIR-ESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L N V + ++LT KE+Q+++L + TK N Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + + + V I +LR K+ + YI TVWG GY L E Sbjct: 184 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 230 >gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 225 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L E + V V G G+EL +D I+LDL L I G E Sbjct: 3 RILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ ++ D+V GL++GADDY+ KPF EEL+ARIRA +RR + Sbjct: 63 VARRLRADSNV-PIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +L+++ ++ + V R+ LT KEY ++EL N LT+++ + +++ Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I++V++ LR+KL G I TV GY+LRE+ Sbjct: 182 YDFGGESNILEVYVRYLRQKLEAN-GEPRLIHTVRSVGYILRED 224 >gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221 >gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 243 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +++ D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGAPGIPSSGVIAIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 233 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + F+V GE+ ++L + + IILD+ + + G+ Sbjct: 13 KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R +R P+ +L+ S D+++G G D+YISKPF+ + LVAR+ AI+RRS Sbjct: 73 ETCRTIR-KYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSN 131 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LI G + ++ A V + G I L+ KE++++ + L++E LN++++ Sbjct: 132 AVSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNNVWN 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ +YI T+WG GY Sbjct: 192 YDYFGDARTIDTHVKKLRSKMGEKG---DYIRTIWGMGYKFE 230 >gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 223 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++++ + V V G + LT +E+ + +L ++ L Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 221 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] Length = 227 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEVSDGVLESGPVRMDVERHVVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus NA1000] gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus NA1000] Length = 242 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 12/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--------IILDL 52 M IL++EDD +A +E LK+E + V V G G+E + + I+LDL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L + G EV + LR + + TPV +L+ + +++D+V GL++GADDY+ KPF+ EEL+ARI Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RA---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A R R A + G++ ++ V G + LT +E ++EL L Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E L++++ ++P ++DV++ +LR K+ + ++I TV G GY L + Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKI-DPPLASSFITTVRGLGYRLEPD 234 >gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIED+K ++ ++ L+ E++ V+ G++G+E+ + + D ++LDL + I G Sbjct: 4 IKILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R PV +++ S +D V GL+ GADDY++KPF+ +EL+ RI+ ++RR Sbjct: 64 DLIKEIRNKSNV-PVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L+ G I LT E+Q+I+ L N T+E + Sbjct: 123 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + +YI+T++G GY Sbjct: 183 EITFGFDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYK 227 >gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] Length = 224 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED + + LK+ ++V G D ++ E+DA+ILD+ L + G Sbjct: 1 MRILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R A TPV +L+ I+D+VRGL SGADDY+ KPF +EL+AR+R ++RR Sbjct: 61 EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL V+ A+T G I L+ KE+ ++E L+ L++E +++ Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV+I LRKK+ + I TV GYVLRE Sbjct: 181 YDYEGGSNVVDVYIRYLRKKI-DEGRQPKLIHTVRSVGYVLREEV 224 >gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ + V V + G G+ L E+D I+LD+ L + G+ Sbjct: 1 MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR +TPV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVVKTLRT-TRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ G RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFSV-KLIHTVRGVGYVLE 220 >gi|114797249|ref|YP_759671.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC 15444] gi|114737423|gb|ABI75548.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC 15444] Length = 237 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 166/236 (70%), Positives = 195/236 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ALA SIELMLK+ FNVY+TDLGEDG+++ K YEFD I+LDL L DI GF Sbjct: 1 MRVLLIEDDRALARSIELMLKAAGFNVYLTDLGEDGVDIGKVYEFDMILLDLSLPDITGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR+++++TPV ILSG IE KV+ L GADDY++KPFNK+EL+ARI AIVRRS+ Sbjct: 61 EVLKQLRMSRVNTPVMILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I TGD+ VNLDAKTVEV G R+HLTGKEY M ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVDGERVHLTGKEYAMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL A GG +YIETVWGRGYVLR+ + +E A Sbjct: 181 GLDEPELKIIDVFICKLRKKLQQATGGNHYIETVWGRGYVLRDPRPSQKSSEIEEA 236 >gi|319403800|emb|CBI77384.1| cell cycle transcriptional regulator CtrA [Bartonella rochalimae ATCC BAA-1498] Length = 233 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 165/227 (72%), Positives = 194/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+ KI TPV ILSGM IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL+VNLDAKTVE+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPVEE 227 >gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 239 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + L+S + V G++ + + + E IILDL L I G EV Sbjct: 8 ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLMLPKIDGLEV 67 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------ 114 R L+ P+ +L+ + DK+ GL+ GADDYI+KPF+ E+VAR+RA Sbjct: 68 CRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRRVE 127 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ S+ DL ++ V + G R+ LT KEY+++++ + ++E Sbjct: 128 DRRKPEEPEHSVNEFNDLVIDEQKHEVLLSGSRLDLTLKEYELLKVFAANPFNVFSREHL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L ++ + + +DV +C LR+KL YIETV G GY Sbjct: 188 LEKVWGYDFMGDTRTVDVHVCNLRRKLEEADDKTGYYIETVRGVGYRF 235 >gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CRIIRQSSDVHIFML-TAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + +FD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 69 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] Length = 226 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + ++ L++ + V + G DG K ++ D I+LD L +I G + Sbjct: 3 KILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISGID 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ +R + PV +L+ + EDK+ GL+ GADDYI+KPF+ +E++ARI +++RR Sbjct: 63 LLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRY 122 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I D+ VN++ V G I LT KE+Q+++LL K LT+ L+ Sbjct: 123 KYTSNEKIEVLKADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + +DV I LRKK+ + IETV G GY ++ Sbjct: 183 KIWGYDYYGETRTLDVHIRHLRKKIGDNDS--KLIETVRGVGYKIK 226 >gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 236 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 130/235 (55%), Gaps = 2/235 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ LA +I L+ F V + GE G+ + ++DAI+LDL L + G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A TP+ IL+ E + GL GADDY+ KPF+ + L+AR+ A++RR+ Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V GDL ++ +TV I LT +E+ ++E L +T +K L+H++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + E +++V++ LR+K+ + G I TV G GY++ + E + T Sbjct: 181 ADFDREPNVVEVYVGYLRRKI-DQPFGTGSIRTVRGHGYLMGDEDP-RAPEPVAT 233 >gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] Length = 233 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 +++L+++D+ + ++ L + + V GE+ +++ + IILD+ + + G Sbjct: 4 IKVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +E + +R P+ +L+ S D++ G + G D+YI+KPF+ + LVAR+ AI R Sbjct: 64 WETCKEIR-KFSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRT 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A S+I G ++++L A V + G I L+ KE++++ + K L++E LN++ Sbjct: 123 SDVPADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + ID + KLR KL + +YI+T+WG GY + + Sbjct: 183 WNYDYFGDARTIDTHVKKLRSKLKDKG---DYIKTIWGMGYKFEVDDE 227 >gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51] gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++++ +E +LK E + + D GE +E + D +ILD+ L I G+E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DK G GADDY+ KPF+ EL R++A++RRS Sbjct: 66 VCRTIR-ETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + I G+L +N ++ V V+G ++LT KE++++ ++ + T+E Sbjct: 125 KEQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + I VFI KLR+K+ YI+TVWG GY Sbjct: 185 LFAHMWGDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+A+A L++ ++ V + + GE G++ +F I+LD+ L GF+ Sbjct: 3 RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A + P+ ++S DK+RGL GA+DYI KPFN EL+AR+++ + Sbjct: 63 VCRNLR-ASKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q +L ++L++ V + G + L KE++++ L+ N +K+ Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E+ + V I ++R+K+ + +IETVWG GY R+ Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + ++L L+ E + V G + +E + + ++LD+ + ++ GF Sbjct: 4 IRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEMDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R +R PV +L+ + DKV+GL+ GADDY++KPF +EEL+AR+ A++RR Sbjct: 64 EVCREIR-KVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYG 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L + +A V + LT KE+ ++EL L KN +++ L Sbjct: 123 VSEPESRGNTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221 ++ + + +D + LR KL+ A G++ I+TVWG GY L Sbjct: 183 LVWGYDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228 >gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB [Candidatus Nitrospira defluvii] gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB [Candidatus Nitrospira defluvii] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + ++L L+ E F G +G+ K D IILDL L ++ G E Sbjct: 10 KILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGLE 69 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V + +R+ + + P+ +L+ + D V GL+ GADDY++KPF+ + LVAR++A++RR Sbjct: 70 VCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRRL 129 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q+ G L+V+L V + G + LT KE+ ++E L LT+++ L+ Sbjct: 130 ERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDVLLS 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +DV + +L++KL + I ++ GY LRE+ Sbjct: 190 AVWGYDYYGTTRTVDVHVRRLKQKL---PLLDDAIISIKSLGYKLRES 234 >gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 109/226 (48%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ +A I + L+ E ++V G++ I + D +ILD+ + + G+EV Sbjct: 6 ILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKMDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 66 TRQIRAQYHM-PIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLML 124 Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + G + + + +TV V +I LT KE+ ++ LL+ + E Sbjct: 125 NQPKVEDNKSVLAIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENIF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LRKKL I+TVWG GY Sbjct: 185 QQVWAEDYYEGRNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] Length = 234 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L ++ L+ E F V GE+ + L ++LD L + G EV Sbjct: 9 ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR TPV +L+ DKVRGL SGADDYI+KPF+ ELVAR+RA+ R + Sbjct: 69 CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRAA 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ L+ D+ ++L A V G +HL E++++ ++E L+ ++ Sbjct: 129 PGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDVVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I +LRK L+ ++ I TV GY L +N Sbjct: 189 GHDVYVEPRTVDVHIRRLRKALNE-TDDQDLIRTVRSAGYALDQN 232 >gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232 >gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 237 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 9/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ +L + L F V G++ + D ++LD+ L G ++ Sbjct: 4 ILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLPGKSGVDL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +++ + DK+ GL+ GADDY++KPF+ E++AR+RA++RR Sbjct: 64 TRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRRLDKQ 123 Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G+L+++ D V+ QG + LT KEY+++ ++ R+ L +E Sbjct: 124 QEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEYELLAYMADREGRVLDRETI 183 Query: 175 LNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ ++ P+ +++D+ + LR K+ + +++TV G GY + A D Sbjct: 184 LHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKHPVHLKTVRGFGYRFDDQAVD 237 >gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + L L+ E + V G +G+ + +DA++LDL L I G E Sbjct: 6 RVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 66 ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ ++++ A+T V R+ LT +E+ ++ + + ++ L Sbjct: 126 LERNARIDAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ + E ++ I +LR K+ I TVWGRGY Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGYKF 231 >gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD +A + L V G +G+ + ++D +ILD L + G Sbjct: 1 MHILLVEDDPQMADYLRKALIEAGAVVDRAADGREGLLMAAGSDYDVLILDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++R LR + TPV LS + ++D+V GL++G DDY+ KPF EL AR+ A+ R + Sbjct: 61 AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + GDL ++L + V G I L +E++++E L +T+ M L ++ Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ ++TV G GY L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRGKIDKDF-DPPLLQTVRGAGYRLQ 222 >gi|154247416|ref|YP_001418374.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161501|gb|ABS68717.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 167/224 (74%), Positives = 197/224 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A IELMLK+E+FNVY T+LGE+G++L K YE+D I+LDL L D+ GF Sbjct: 1 MRVLLIEDDSATARGIELMLKTESFNVYTTNLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRVAK+ TP+ ILSG+++ EDKV+G GADDY++KPF+K+E+VARI AIVRRS+ Sbjct: 61 EVLRALRVAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREP 224 >gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D+ L +E +LK E F ++ G +GI+LCK + D ++LD+ + D+ GF Sbjct: 9 KILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R PV LS S DK+ L GADDY++KPF+ +E+ RI+A +RR+ Sbjct: 69 EVCKNIR-NFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 127 Query: 121 GHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ ++L+ V + LT KEY ++ ++ N LTK+M Sbjct: 128 YIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQMI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ E I V I KLR+KL + YI T G GY L+ Sbjct: 188 CDEVWNDNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKLK 235 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA + +L N+ V + + GE + E+D +ILD+ L + G Sbjct: 1 MRILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +TPV +L+ ++ DKV GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 GFCQRWRGKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +N V + LT KEY ++ELL L++ + ++ Sbjct: 121 ASVALNLSWGRLHLNPSTYEVTFDNRPLSLTPKEYALLELLVSNGRRVLSRTGIIERIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + I LR KL A N+IETV G GY L++ Sbjct: 181 LEDPPSEETVKSHIKGLRAKLREAGAPDNFIETVHGLGYRLQQ 223 >gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 636 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 123/222 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD ALA + L + N+ V GE G +++D ++LD L + G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+ + +K+ GL++GADDY+ KPF+ +EL+ARIR ++RR+ Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ G+L ++ + V G + LT KEY ++EL + + + L L+ Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ P + + +LR+KLS A + IETV G GY L+ Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 55.4 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + +L NF + + L D ++ D+ + I GFE Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 + R LR P+ LS + + GADDYI+KP + Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVH 614 >gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVIKKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232 >gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ A + + V + GE+G+ L ++D +++D L G Sbjct: 13 MRLLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPARDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR +TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR+ A R Sbjct: 73 SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ DL ++ A V G I L +E++++E L +T+ M L +++ Sbjct: 133 SQGAETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ I TV G GY++R A Sbjct: 193 DYHFDPQTNVIDVHVSRLRSKIDKGFDVP-LIHTVRGAGYMVRAGA 237 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A + L L+ E + V V + G DG++ + FD ++LD+ L ++ G E Sbjct: 5 KILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +TP+ +++ S+ DKV GL GA+DYI+KPF+ EEL+ARIRA +R + Sbjct: 65 VLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIH 124 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+VN + ++ G + LT +E+ ++ L + LT++ L + Sbjct: 125 AQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ + K I TV G GYV++ Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227 >gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii] Length = 220 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ LA +E L++ + V G+ L FDA++LDLGL + G Sbjct: 1 MRVLLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ S +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 TVLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V + G I LT E++++ +L ++++ + HLY Sbjct: 121 VHASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + IDVFI +LRKKL + IETV G GY L N+ Sbjct: 181 QDFDRDSNTIDVFIGRLRKKLP-----PDTIETVRGLGYRLAGNS 220 >gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 269 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 15/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L+ ++V GE+ +EL D ++LD+ L + GF V Sbjct: 27 ILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLPKLDGFAV 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R P+ LS + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 87 CRRIRGE-SIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPG 145 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q ++ GDL V+ + + V G RI LT E+ ++ELL + Sbjct: 146 ASSVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVVP 205 Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 223 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V GE+G+ + +D +ILD+ L G Sbjct: 1 MRILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR A PV +L+ + +D V GL +G+DDY++KPF EL AR+RA+ RR Sbjct: 61 SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V DL ++ ++ V I LT KEY ++E L T +T+ M +++ Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E IIDV++ +RKK+ + + I TV G+GY L+ Sbjct: 181 HSFESFTNIIDVYVNYVRKKV-DKGFDRKLIHTVRGQGYTLKAE 223 >gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ + V V + G G+ L E+D I+LD+ L I G+ Sbjct: 1 MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR + + PV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 TVVKTLRAKRTT-PVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ G RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDDFPV-KLIHTVRGVGYVLE 220 >gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDK L +E LK EN+NV G + + + + D II D+ + + G+E Sbjct: 4 ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIMMPHMDGYEF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + I+ P+ +++ +IEDK RG G DDY+ KP N +E++ R+ A++RRS Sbjct: 64 TEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSNIV 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +V G+++++ + TV +G I L KE+ ++ L T++ ++ ++ Sbjct: 124 NEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWGMD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + + +DV I +LR+K + + + I TV G GY Sbjct: 184 AETDERTVDVHIKRLREKFGDFSEFE--IITVRGLGYK 219 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104] gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G +E+ + + D ++LDL L + G E Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 64 VCRQIRAESDS-PIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+++++ V RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 KAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 221 >gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + + L+ + V GE + L + D ++LDL L D G+ + Sbjct: 4 ILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDGYSI 63 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR P+ +L+ D++ GL+ GADDYI KPFN E+VAR+RA++RR Sbjct: 64 VQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLRRGA 123 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q G +S++LDA + G + LT E+ ++ L T+ + Sbjct: 124 GPPQPPQRLSYGAISLDLDAHRATIAGAPLELTPSEFDLLALFMRNPGHAFTRLELIEQG 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +D I LRKK+ IETV+G GY LR+ Sbjct: 184 LGYAYAGMERTVDSHIKNLRKKIERDPQAAPLIETVYGVGYRLRQE 229 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 69 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L S + V V++ G DG+ + + EFD +ILD+ L I G+ Sbjct: 1 MRILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R R + PV L+ S+ED+V+GL+ GADDY+ KPF+ EL+AR+R ++RR+ Sbjct: 61 SFIRRFR-ERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + DL V++ + G RI LT KE+ +++LL K +++ + ++D Sbjct: 120 MRQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV I +LR K+ + I+TV G GY + Sbjct: 180 MNFDSDTNVVDVAIRRLRAKI-DDGFAVKLIQTVRGMGYRIE 220 >gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 260 >gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 242 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ +E + Y D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R Sbjct: 64 VAREVR-QTHDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122 Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + I G+L + DA VE G +I LT +E+ ++ ++ + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFDLLYYMAQHMDQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +T+E L ++ +V+ +DV + +LR+K+ + + T G GY Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 260 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 260 >gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L ++V GE+ +E + E D ++LD+ + + G+ Sbjct: 7 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234 >gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++++ +++ K NF V GE+G+ + D ++LD+ L I GF+ Sbjct: 4 KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR + +L+ DK++GL+ GADDY+ KPFN EL+ R ++++RR Sbjct: 64 VCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLVG 123 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + +G + L ++ V + I LT KE+ ++++ KN T++ L+ Sbjct: 124 KGTSDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + KI+DV I +LR K+ + +IETVWG GY R+ Sbjct: 184 KIWGYDYMGDTKIVDVNIRRLRSKIEDKDSHGMFIETVWGIGYRWRKE 231 >gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC 13950] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGED 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] Length = 241 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 130/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL ++ I+LDL L ++ G E+ Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMDGIEM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 SSKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTS 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY N DE+ Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVNTNDESS 240 >gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 228 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ + I++ L+S ++ + G+ Y+ D ++LD+ L + G + Sbjct: 7 KILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDYI KPF +EL+ARI+A++RR Sbjct: 67 VLKWIRKDSET-PVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNA 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V ++++++ V + + I + KE++++ L+ N T+E L ++ Sbjct: 126 ENVDKDVLKFRGLTIDINSYIVIYKENEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL + IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQGDQNWQ--IETVWGVGYKFE 226 >gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51] gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD + + L+ E + V + + G ++L + D ++LD+ L ++ G E Sbjct: 7 KILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDGLE 66 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + + P+ +LS + D+V GL+ GADDY++KPF+ EL+ARI+A +R Sbjct: 67 VCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLREE 126 Query: 120 RGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ L GDL + ++ V V+G + LTGKE+ ++ + R N ++E L Sbjct: 127 KRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLLQ 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV I LR KL IE+V G GY L N Sbjct: 187 KVWGYTISGDTRTVDVHISNLRSKLK---SISPIIESVRGVGYRLAVN 231 >gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora] gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora] Length = 248 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 9/239 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L + V G + +E E D ++LD+ + + G+ V Sbjct: 11 ILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVMMPRLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRRVEKD 129 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QTAGIPNSGVIQVGDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 ++ + +++DV I +LR KL + I T G GY+ + + E Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVEAVVSEGT 248 >gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 139/223 (62%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA+ I+ + E + V VT GEDG+ K +DAI+LD+ L I G Sbjct: 4 MRLLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPIIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR ISTPV IL+ S++DKV GL SG+DDY++KPF+ EEL++R+RA++RR Sbjct: 64 SLLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRRF 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL ++ KT++ RI L+ KEY ++E L+L KN +++ + HLYD Sbjct: 124 ATSSPIIKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSIIEHLYD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDVFI ++R K+ K I T G GY L+E Sbjct: 184 EDFDLYSNVIDVFINRIRNKIDKDF-DKKLIHTYRGIGYSLKE 225 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + I + E + V + G I++C+ +FD I++D+ + D GF Sbjct: 3 RILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ PV +LS + DK+ G + G DDY++KPF+ EL+ARI+A++ RS+ Sbjct: 63 ACKKIK-EFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKT 121 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + ++ TV V G R LT KEY ++ + LT++ LN Sbjct: 122 DVSENDSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +D I LR KL ++ I+TV G GY Sbjct: 182 VWGYDSFGVDRTVDWQIKLLRSKLG---SCRDCIKTVRGVGYKFE 223 >gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G++ +++ ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 TSEEGASGAPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAK 226 L ++ +++ ID + +LR+KL + + I TVWG GY + Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEVPEE 238 >gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 628 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 124/224 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ ML S+ + V V + G+ G E + +D ++LD+ L + G Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ +L+ ++ +DKV+GL +GADDY+ KP + EL ARIRA++RRS Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+ + ++ V G I +T KEY ++ELL + T + + L+ L+ Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + I LR+KL A G +IETV+G GY L +N Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + +I+ +L+ + + D ++LD+ + + G E Sbjct: 497 RVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + +R PV ++ + + + + Q+GADDY++KPF Sbjct: 557 LCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPF 600 >gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016] gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 235 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + + I LK E +N+ GED I F +ILDL L I G E Sbjct: 10 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + P+ ILS D++ GL GADDYI KPF+ EL AR+++ +RR Sbjct: 70 VLRKIR-ESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L N V + ++LT KE+Q+++L + TK N Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + + + V I +LR K+ + YI TVWG GY L E Sbjct: 189 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 235 >gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +++ D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 228 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CRIIRQSSDVHIFML-TAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ L + LK E ++V G++ +E E+D IILD+ + + G+ Sbjct: 1 MRLLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIMMPKVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K TPV L+ +IED+V GL SGA+DY+ KPF+ EL ARIR ++R ++ Sbjct: 61 EVLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRLAK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + GDL ++ TV + L+ +EY ++E + L KN L++E NH++ Sbjct: 121 GSATTHLQAGDLILDTATHTVHRGEKLLLLSAREYALLEYMLLNKNIVLSREKIENHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV+I LRKK+ + I TV G GYVL+E + Sbjct: 181 YEYEGGTNLVDVYISYLRKKV-DGGFSCKLIYTVRGSGYVLKEPS 224 >gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A IEL L++E + V G G+ + + +ILDL L + G EV Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ IEDKV+GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 66 ARRIR-KTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V G RI L+ KE++++ELL+ T+ ++ G Sbjct: 125 ITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVWPG- 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 184 YQGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 224 >gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 235 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 11/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD+ +A I+ L E F ++ G + I + + D IILD L + G Sbjct: 1 MNILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWMLPGLDGL 60 Query: 61 EVLRALRVA----KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 E+ +R + +L+ D++ GL +GADDY++KPF+ ELVAR+RA++ Sbjct: 61 ELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALL 120 Query: 117 R-------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R ++R + + + + LT E++++ Sbjct: 121 RRSLRQGGQTRIYQTASFTIDPDQRCARRHYADTPEQTLDLTALEFELLSTFVSYPGRVW 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ L+ + +++D + +LRKK+ + +I+TV G GY + Sbjct: 181 NRSQLIDKLWGSDFFGDDRVVDTHVARLRKKIEPDSSNPTFIKTVIGVGYKFED 234 >gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 235 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F + G +E + D ++LDL L + G EV Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRT-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDS 122 Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A+ ++ G + ++++ TV V + + KE+ ++E L LT Sbjct: 123 GAGADTEAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVLT 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 183 RGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234 >gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 233 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +D+ +A + L +K E ++ + G+ ++ + + D ILD+ + + Sbjct: 1 MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMPGL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV R +R + + P+ LS +S DK+ GL GADDY++KPFN ELVAR+ A +R Sbjct: 61 DGYEVTRLIR-EQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLR 119 Query: 118 RSRGHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R + Q + G L + + +TV + G I LT KE+ ++ LL+ Sbjct: 120 RFKQLNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDILYLLARYPKKVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++ + V I LRKKL +I+TVWG GY Sbjct: 180 SADNIFEMVWGEAYYEGSNTVMVHIRTLRKKLGEEKTKNKWIKTVWGVGYSF 231 >gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like) [Caminibacter mediatlanticus TB-2] gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like) [Caminibacter mediatlanticus TB-2] Length = 222 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 138/224 (61%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDDK LA IE LK +NF V V + GE+G+ L + ++D +I+D L + G Sbjct: 1 MKVLLVEDDKKLAKIIEKGLKRQNFRVDVAEDGEEGLYLARNNKYDVMIIDWMLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ LR I+TP IL+ S D S ADDY++KPF EEL+AR++A+ RR++ Sbjct: 61 DLIKTLRKEDINTPTLILTAKS-DLDDKVEGLSVADDYLTKPFEFEELIARLKALFRRNK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I GDL +NLD K V+ G I LT K++++++LL + KN +T EM +L++ Sbjct: 120 KLPENIIKVGDLEMNLDTKEVKRAGKPIELTAKQFELLKLLMINKNKIVTPEMIEENLWE 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E + +I I LRKK+ + K ++T+ G GY + + Sbjct: 180 MNEERDSNVITAHISYLRKKI-DKGFDKELLKTIRGMGYKISDE 222 >gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CDC1551A] Length = 230 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 67 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229 >gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I G+L + + V V+G I LT +E+ + +L ++ L Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 VWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 220 >gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+K +A ++ L+ E F V T G+ + D IILDL L +I G++ Sbjct: 4 KILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + DK+ GL+ GADDY++KPF +ELVAR++ +RRS Sbjct: 64 VCREIRKE-SHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V L ++ + + V++ G + LT E+ ++ L++ ++ L+ L Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LRKK+ YI TV G GY +++ Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKD 225 >gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A + RR+ Sbjct: 61 RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + V G L+V+ A+ V +G + LT KE+ ++E L LR + K L+H++ Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + I++V+I LR+KL I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISALRRKLGA-----ERIRTVRGAGYRLE 218 >gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 256 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ AL ++E L E + V G + + + D ++LD+ + + G Sbjct: 18 RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGLT 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +R + PV +L+ ++ D+V GL GADDY++KPF +EL+AR+RA++RR+ Sbjct: 78 AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALLRRNAL 137 Query: 122 HAQSLIVTGDL------------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A++ T +N + V GH I LT E+ ++E+ L Sbjct: 138 AAEAAARTAADEDGGEVLSFADLRMNTATREVTRGGHTIELTRTEFMLLEMFLSHPRQVL 197 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 T+E L ++ EP +DV++ LR+K G I+TV G GY Sbjct: 198 TREQILKAVWGFDFEPSSNSLDVYVMYLRRKTEQH-GMPRIIQTVRGVGY 246 >gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594] gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGDVRLDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGA-----EVITTIRGLGYSLDDPA 220 >gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L] gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 119/229 (51%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + +++ L+ E + V + G +++ ++ I+LDL + + G V Sbjct: 7 VLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPEKDGVAV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR TP+ +L+ ++V G ++GADDYI KPF+ E+V R++AI+RRS + Sbjct: 67 ATELR-ETKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSAAY 125 Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + V L+++ DA V G ++LT KEY+++ L+ + +E Sbjct: 126 SPISNSTASKDLVVFPHLTIDHDAHRVTADGVEVNLTPKEYELLYFLAKAPDKVFDREHL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSESAAKMIVTVWGVGYKFE 234 >gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 233 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++A+A ++ L E + V G++ +EL + + I+LD L G Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R P+ +L+ +S D L G DDYI+KPF EEL ARIR I+RR + Sbjct: 67 VLRRIRKQSDV-PIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L +I+LT KE+ ++ L +++ L Sbjct: 126 TQEQNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + +DV+I +R KL K I+TV G GY LRE+ Sbjct: 186 DVVWGYDFVGQTNTVDVYIRTIRNKLGE--PYKKLIKTVRGLGYCLRED 232 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + +E D I+LD+ + + GFE Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR +TPV L+ + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR Sbjct: 66 VTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSRS 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L++N+D V + I L+ E+ ++ L L N L+K L+H+ Sbjct: 126 VQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLR 222 ++ + I++ +I LR+K+ N I T G GY++R Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMIR 230 >gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] Length = 242 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + ++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232 >gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 235 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ LKSE +N G + I++ + + D +ILD+ + ++ G E Sbjct: 6 ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVMMPNLNGIET 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS S DK+ GL GADDY+SKPFN ELVAR+++ +RR Sbjct: 66 CLKIR-EMKEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRRFYKF 124 Query: 123 AQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 DL++NLD V++ + LT E+ ++ LLS + + E Sbjct: 125 KNKQDVLYKEDENIIRIEDLTINLDTHEVKLGDTFLKLTPTEFDILSLLSKSRGKVFSIE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ + +I+TVWG GY + + Sbjct: 185 NIYESVWNQEFMTSDNTVMVHIRKIREKIESDPRNPRFIKTVWGVGYKIEK 235 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ + L+ F V G +G++L ++ +ILD+ L + G+ Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR TPV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R ++RR Sbjct: 61 QLLRELR-KVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SLI D+ +++ + V G R+ LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++DV I +LR KL + + I+TV G GYVL E Sbjct: 180 MNFDSDTNVVDVAIRRLRAKL-DDPHPRKLIQTVRGIGYVLEE 221 >gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR, regulation of Pi uptake (OmpR family) [Frankia alni ACN14a] Length = 226 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLRTRSSV-PIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T G + ++++ V V G + L KE++++E+ LT+ ++ + Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGYKFEP 226 >gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I+ L+ F+V +D GE+ IEL K + D I+LDL L I G EV Sbjct: 6 ILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGIDGIEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R P+ +L+ M D++ GL+ GADDY++KPF+ ELVARI+A++RRS Sbjct: 66 CKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRRSE 125 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL ++ + V ++ I LT KE++++ +L+ + L++ + L+ Sbjct: 126 EKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLLDE 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + +DV I LRKK+ + G YIET+ G GY ++ Sbjct: 186 VWGYDYFGETRTVDVHIRHLRKKIGDDQSG-EYIETIRGVGYKMK 229 >gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDDK L+H I LK E F V E+G+ + E+D I+LD+ L + G+ Sbjct: 1 MKVLIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIMLPKMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EV+R LR K+ TP+ +LS IEDKV+GLQ GADDY++KPF+ EL+ARI A I R Sbjct: 61 EVIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL+++L K V G +I+LT KE+++++ L +T+ M L +++ Sbjct: 121 TIEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVF 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + ++DV I +LR+K+ + K I TV G GYVL+ + Sbjct: 181 DIDFDIDSNVVDVHIHRLREKI-DKRFEKKLIHTVRGFGYVLKSD 224 >gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 236 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ +AH I+L L+ E F ++ G + + + + D IILDL + + G Sbjct: 1 MDILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMIPGLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D+V GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EVCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRR 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTK 171 +G + T V++D +T Q + LT E+ ++ + Sbjct: 121 SLRQGGQNQVNRTQHFIVDVDQRTASRQMNSQQPEVLDLTTLEFNLLTTFVSNPGRVWNR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ + +++D + +LRKK+ + +I+TV G GY + Sbjct: 181 TQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDSASPTFIKTVVGVGYKFEDP 233 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L+ F V G I E D I+LD+ L D+ GF Sbjct: 5 RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + LR A + P+ L+ EDK+ GL +G DDY++KPF+ +E+VARI+AI R + Sbjct: 65 VTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTMQ 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S+I TG+L+++ D V V I L+ E++++ L L N L+K L+H+++ Sbjct: 125 ADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+K+ + I+T G GY+L+ Sbjct: 185 YDFNGDAGIVESYISYLRRKIDPHSSEP-LIQTKRGFGYMLK 225 >gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + G D ++ Y+ + I+LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKVGSYDPELIVLDVLMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR ++ P+ +L+ ++ D+V GL +GADDY+ KPF +EL+AR+RA++RRS Sbjct: 72 AARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARLRALLRRSSY 131 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ GDL ++L + V G R+ LT E+ ++E+ LT+E Sbjct: 132 TGLQGAALPEGDVMAFGDLRMDLTTRDVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + AAG + TV G GYVLR D Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRPAEGD 244 >gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ +AH I+ LK E V ++ GEDG L + ++D IILDL L G Sbjct: 1 MKILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + +STPV +L+ S+EDKVRGL +GADDY++KPF EEL+AR+RA++RR Sbjct: 61 VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++ ++ V QG I LT KEY ++E L L++ + H++D Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +PE +IDV+I LR K+ + + + T+ G+GY+L ++ Sbjct: 181 MNFDPESNVIDVYISHLRSKI-DKGFDVSLLHTLRGQGYLLTDD 223 >gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 224 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 135/223 (60%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L SI +LK++ ++V G++ ++ + ++D II D+ + + G Sbjct: 1 MKVLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR +I TPV +L+ S+EDKV GL +GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 61 GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +L+ GD S++L KT++ +G + LT KEY+++E L N L++E H++ Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E IIDV + +RKKL G + I+T G GYV + Sbjct: 181 DFDYVGESNIIDVLVKNIRKKL----GNPSIIQTKRGMGYVFK 219 >gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL +ED+ +A + LK + F V D G++G E+D ++LD+ L G Sbjct: 1 MNILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR + + PV +L+ + ++D++ GL GADDY++KPF EEL+ARI A++RR Sbjct: 61 AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+++ G L ++ + V + LT +E+ ++E L LT+ L H++ Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 P ++DV I ++RKKL GG + IE+V G GY R+ Sbjct: 181 YDFNPTTNLVDVCIQRIRKKLERM-GGASCIESVRGVGYCFRKPE 224 >gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus C3-41] gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Lysinibacillus sphaericus C3-41] Length = 230 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 132/226 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L+ I LK + V G++ +EL + E+D IILDL L + G Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +RV + ILS S+I DK+ GL GA+DY+ KPF+ +EL ARIR ++RRS Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I +++++ K V V G IH+T KEY ++E L L +N ++ E + H++D Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I LRKK+++ G I+T+ G+GY++ EN + Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITENDR 226 >gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto BEST195] Length = 289 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + +D IILD+ L + G Sbjct: 63 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 122 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR + Sbjct: 123 TICRKIR-ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 181 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + +I T ++N + V + G + LT KE+ ++ L ++E Sbjct: 182 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 241 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKL A+ K ++ TVWG GY E+ Sbjct: 242 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 289 >gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA3] gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA2] gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL097PA1] gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL099PA1] gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266] Length = 232 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L+ + V G + + DA+I+D+ + + G Sbjct: 3 MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR P+ +L+ +++D+V GL +GADDY+ KPF +EL+AR+RA+ RRSR Sbjct: 63 EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + LS + + + RI LT E+ ++ + L + L Sbjct: 123 PEPEQNEAPEQLSFADLTLDPGTREITRGNRRISLTRTEFALLAVFLQNPEKVLERWWLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++V+I LR+K + G I TV G GYVLRE Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEPRLIHTVRGVGYVLRE 229 >gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG] gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316] gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + G + + ++ D IILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 63 VAKEVR-KTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S I G+L + DA + +G I LT +E++++ L+ +T Sbjct: 122 IETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + G YI T G GY ++ Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMK 233 >gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|288962372|ref|YP_003452667.1| two-component response regulator [Azospirillum sp. B510] gi|288914638|dbj|BAI76123.1| two-component response regulator [Azospirillum sp. B510] Length = 246 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 149/227 (65%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ++A SIELML +E F V TDLGEDG+E+ K Y++D IILDL L DI G+ Sbjct: 1 MRVLLVEDDSSVAKSIELMLNTEGFIVDSTDLGEDGLEIGKLYDYDIIILDLMLPDIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+++TP+ ILSG++ +++K++GL GADDY++KPF+K EL+ARI+AIVRRS+ Sbjct: 61 EVLRRLRAARVTTPILILSGLTEMDNKIKGLGFGADDYLTKPFDKRELIARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S+I TG L+VNLD +TVEV +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSDSIIRTGRLTVNLDTRTVEVDQSPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVF+CKLRKKL+ A G NYIETVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFVCKLRKKLAAATQGDNYIETVWGRGYVLRDPHEE 227 >gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 277 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 17/240 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE+ +EL D ++LD+ L + GF V Sbjct: 34 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDGFAV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 94 CRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 152 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ G+L V+ + + V RI LT E+ ++ELL + + Sbjct: 153 SASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 212 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226 L L+ R +++++DV++ +LR KL I TV G GY + +NA Sbjct: 213 AEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRMGDNAP 272 >gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL N1-067] gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL S4-171] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 123/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G++ +++ ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V+G I LT KEY ++ L+ + +E Sbjct: 125 TSEEGASGAPGDIITFPHLKIDNEAHRVIVEGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAK 226 L ++ +++ ID + +LR+KL + + I TVWG GY + Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEVPEE 238 >gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E F Y G D + + + I+D+ + ++ GF+ Sbjct: 4 KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIMMPNMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 64 LCYELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G++ +N V V + L KE++++ L + T ++E + ++ Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR+K + I T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222 >gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L+ + F+V G+ +++ I+LDL L + G E Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R A S P+ +L+ + ++K+ G+ GADDY++KPF+ ELV R+RA++RR+ Sbjct: 66 VCNRIR-AVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR 124 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL V++ V+ QG ++LT E++++ + ++E + Sbjct: 125 DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +D +I +R+K+ + YI TV+G GY + Sbjct: 185 KAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPS 232 >gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DD+ + I L L+ E F G + K IILDL L I G Sbjct: 6 KIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLMLPGIDGMT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DKV GL+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 66 LCKEVR-KFTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DLS++L V+ +G + LT KE ++ L N T++ L +++ Sbjct: 125 EENDSDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+K+ + K + TVWG GY Sbjct: 185 GYEYMGDSRTVDVHIKRLREKIGDGPNWK--LTTVWGVGYKFE 225 >gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A ++ LK + GE G+ L +D +I+D L + G Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+++LR TPV ILS + ++D+V+GL++G DDY++KP+ EL+AR+ A R + Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I GDL ++ + V G I L +EY+++E L +T+ M L H++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV + +LR K+ + TV G GY +R+ Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKP-LLHTVRGAGYTIRD 259 >gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DDK + + + L +E + + G + +E + D +ILD+ + ++ G E Sbjct: 4 RILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ + S ++ DK+ GL +GADDY++KPFN E++AR+++++RRS Sbjct: 64 VTKRIR-KNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSNY 122 Query: 122 HAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S G L ++ + V +G I LT E+ ++ LL+ N + E + Sbjct: 123 TQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEIFD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K + V I LR+KL A G+ I+TVWG GY + Sbjct: 183 RCWKMENFVSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGYKIE 228 >gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E + + GE+ +++ ++ + ++LDL L I G++ Sbjct: 6 RILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A PV +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELR-ASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + DL VNL +V GH + + KE +++ L+ N T+ Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L+H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--NSWAITTVWGIGYKFE 233 >gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] Length = 230 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++++ + LK E F+V GE+G+ ++D ILD+ L + G+E+ Sbjct: 8 ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 R LR S PV LS + DKV GL+ G DDY++KPF EL+AR+RA R Sbjct: 68 CRRLRARTAS-PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRLE 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G +++N + + I LT +E++++ L T+E L + Sbjct: 127 DSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREAW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E K +D I +LR KLS A +N IETV G GY + Sbjct: 187 DWEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGYRFK 229 >gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ L ++ L+ E + VY + G G+EL K D ++LDL L ++ G E+ Sbjct: 10 VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R + + P+ +L+ S ++K+ GL GADDY+ KP + E++AR++ I+RR Sbjct: 70 ARKIRKEQET-PILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +I G+++++ AK + ++G I LT E+ ++ L+L ++E + + Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y E + + ID I LR+K+ +I+TV+G GY Sbjct: 189 YGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >gi|89069529|ref|ZP_01156873.1| DNA-binding response regulator CtrA [Oceanicola granulosus HTCC2516] gi|89044864|gb|EAR50954.1| DNA-binding response regulator CtrA [Oceanicola granulosus HTCC2516] Length = 238 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 153/227 (67%), Positives = 182/227 (80%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ +L+G E K+R GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILVLTGDDGTESKLRSFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG + VNLDAKTVEV G +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIKTGRILVNLDAKTVEVDGVPVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL+ A G+NYIETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATDGENYIETVWGRGYVLRDPEPE 227 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D+ + ++ L+ E + V G + +E + IILD+ + + G Sbjct: 14 IKILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPKMDG 73 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++ R +R P+ +L+ D+++G G D+YISKPF+ + LVAR+ A+ R Sbjct: 74 WQTCREIR-QSSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRRS 132 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + G + V+ A V+V G + L+ KE++++ + L++E LN++ Sbjct: 133 NVLDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSREKILNNV 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + ID + KLR KL YI+T+WG GY N Sbjct: 193 WNYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGYKFEVN 235 >gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 241 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ +A + L + V + + G + L D IILD L + G E Sbjct: 16 KILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLPGLDGAE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +S P+ +L+ + + +D++ GL+ GADDY++KP + ELV R+ +++RRS Sbjct: 76 VCRRIR-QTMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRRSVK 134 Query: 122 HAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V +N ++ V + G + LT +E+ ++ R N ++E + ++ Sbjct: 135 EFTPEPVVELAGFVLNPASRVVSLNGVDLALTAREFDLLAFFLRRPNQVFSREDLIRAVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + +LR+K+ + TV G GY Sbjct: 195 GWDF-GDLSTVTVHVRRLREKIEQNPTQPLLLHTVRGLGYRF 235 >gi|148257763|ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp. BTAi1] gi|146409936|gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp. BTAi1] Length = 233 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 166/224 (74%), Positives = 198/224 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREP 224 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + IE + + D I+LD+ + + GFE Sbjct: 12 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A + PV L+ + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR Sbjct: 72 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 131 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DLS+N+D V + I L+ E+ ++ L L N L+K L+H+ Sbjct: 132 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 ++ + I++ +I LR+K+ N G + I T G GY++R Sbjct: 192 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 236 >gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ +A I + LK+E F V G+ G+++ +D +I+DL L +I G Sbjct: 1 MRILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPEINGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R +R P+ +L+ ++ DKV +SGADDY++KPF EL+ RI+A++RR Sbjct: 61 ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I DL ++ A V G I LT KEY ++E L+ L++ M + H++D Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E I+DV++ +LR K+ + + I TV GYV+ EN + Sbjct: 181 QSFEGLTNIVDVYVRQLRAKI-DEPFDRKLIHTVRSVGYVINENGME 226 >gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 227 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S GDLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 261 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G + + + D ++LDL L + G + Sbjct: 40 RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMNGID 99 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA +RR+ Sbjct: 100 VCKAIRSESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEA 158 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL++++ V +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 159 EPAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 218 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 257 >gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676] gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676] Length = 218 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 239 >gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC] Length = 233 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++A+A ++ L E + V G++ +EL + + I+LD L G Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R P+ +L+ +S D L G DDYI+KPF EEL ARIR I+RR + Sbjct: 67 VLRRIRKQSDV-PIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L +I+LT KE+ ++ L +++ L Sbjct: 126 TQEQNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + +DV+I +R KL K I+TV G GY LRE+ Sbjct: 186 DVVWGYDFVGQTNTVDVYIRTIRNKLGE--PYKKLIKTVRGLGYCLRED 232 >gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 235 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+D+ ++ + LK+E + G G+ + + ++ D IILD+ L + G E Sbjct: 13 KILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVMLPGMDGIE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR V +L+ S DK+ GL GADDY++KPF+ EL+ARI+A +RR Sbjct: 73 LLAHLRRESNVY-VIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRRLNP 131 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ + ++ A+ V V I LT E+ ++ L+ L++E L Sbjct: 132 PPAATSETAMLNFAHVRIDPSARRVWVNNTLIDLTTVEFDLLLTLAQHHGRVLSREQLLE 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++DV I +R+KL N +IETV G GY +N Sbjct: 192 KVWGYDYYGDTRVVDVHIGHIRQKLGNNT----WIETVRGVGYRFEDN 235 >gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 223 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + + D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY + Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKI 221 >gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] Length = 224 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL + R K PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G+ I +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGSVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL I+TV G GY+L + D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGV-----EIIQTVRGLGYLLAPPSPD 222 >gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 243 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +++ D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13] Length = 265 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + K E FNV GE+ + + D ILD+ + + G V Sbjct: 47 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 106 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 R +R +TP+ +L+ S EDK+ G + GADDY++KPF+ + L+A+ +A+ R Sbjct: 107 CRNIR-EVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 165 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++++ L++N + V++ G + L+ KEY ++ LS + L+++ L++++ Sbjct: 166 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 225 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR+KL + A NYI TV G GY Sbjct: 226 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 263 >gi|147676478|ref|YP_001210693.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272575|dbj|BAF58324.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L E F V T +L + D IILD+ L + G E Sbjct: 6 ILVVDDEEVVRELVRHCLVREGFKVITTADAYGAFDLIARLKPDLIILDILLPGLDGIEF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR+ PV LS D + GL G DDYI KPF ELVAR++A +RR + Sbjct: 66 CRKLRMKNEV-PVIFLSAKGDSSDIILGLGVGGDDYIVKPFVPGELVARVKARLRRLKPG 124 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ L ++L+ V V G + L KE++++ LL+ N E L Sbjct: 125 EETAAGREPKMLKYRGLEIDLEGHAVLVDGSAVALAPKEFEILALLAKNPNRVFKNEQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ +D + + + V I +LRKK+ YI+TV G GY Sbjct: 185 DLIWQSKDFADNRTLMVHISRLRKKIEKDPNNPAYIQTVRGVGYKF 230 >gi|87124761|ref|ZP_01080609.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86167640|gb|EAQ68899.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 249 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 R+LL+EDD+++ ++ LK+E F+V G + + D ++LDL L + Sbjct: 21 RLLLVEDDESIRETVREALKAEGFDVLACGDGAEALAALTDAAAEPVDLVVLDLMLPGLG 80 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R LR STP+ ++S S D+V GL+ GADDY+ KPF ELVAR RA++RR Sbjct: 81 GLDLCRQLRKNDNSTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 140 Query: 119 SRGHAQSLIVTGDLSVNLDA-----KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ + S V + L+ KEY+++EL +++ Sbjct: 141 SQQPSSSEAPPQVYRHENLCLFAEECRVSRDDKDLSLSPKEYKILELFIKNPRRVWSRDQ 200 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+K+ + +I TV G GY Sbjct: 201 LLERIWGIDFVGDTKTVDVHIRWLREKIEDEPSAPKHIRTVRGFGYRF 248 >gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 227 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + I+ ++S ++ G + + + + D I+LDL L + GFEV Sbjct: 6 ILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLMLPGMDGFEV 65 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ P+ +L+ D++ GL+ GADDY+ KPF+ E++ R+RA++RR++ Sbjct: 66 CKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRRNK 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + LSV+++A E+ + LT E++++ L LT+E LN + Sbjct: 126 GEEDVRQSWRRERLSVDMEAHRAEIDDQELLLTATEFKLLSELIRNPGRVLTREQLLNTV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +D + +LR+KL + A ++ETV G GY +E Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLGDYA---KFVETVRGVGYRFKE 227 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A IEL LK E ++VYV G++G++ + D I+LD+ L I G E Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +++ I D+V GL SGADDY++KPF EEL+ARIRA +R+S+ Sbjct: 65 ICRKIR-QHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL+++ + V+ I LT +EY ++E L K LT+E L +++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + I TV G GY E ++ Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKV-DDGFKTKLIHTVRGVGYKCEERENED 231 >gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM 519] gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii] Length = 228 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++ L+ + + G D +E K ++D I+LDL L I GFEV Sbjct: 4 ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ ILS K++GL+ GADDYI+KPFN EL AR+ AI+RR Sbjct: 64 CKKVR-ETSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEKS 122 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GD+++N + V I+LT KE+ ++ LL N ++E L ++ Sbjct: 123 KKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVWK 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +DV I KLR+K+ + + +I T WG GY + Sbjct: 183 YEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYFQ 224 >gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7] gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7] Length = 241 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L+++D+ + +++ L+ EN+ V+ D GED I++ ++D I+LDL L + G Sbjct: 6 INLLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115 EV +R TP+ +L+ ++ G + GADDYI KPF+ E+V R+ AI Sbjct: 66 EVAGKIR-EAKDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124 Query: 116 -VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + LI ++ + V G+ ++LT KEY ++ L+ + +E Sbjct: 125 SSKPKEKANPDLIEMPHFEIDDQSHRVLADGNPVNLTPKEYDLLLYLAQSPDQIFGREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221 L ++ +++ +D I +LR+KL+ + I TVWG GY Sbjct: 185 LREVWKYEFFGDLRTVDTHIKRLREKLTKHSEPAAKMIVTVWGLGYKF 232 >gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++EDD+ + + +L + G + + + FD ++LDL L + G Sbjct: 4 IRILVVEDDQDINRLLCTILNDAGYFSQSAFSGSEAMLWAEKEGFDLVLLDLMLPGLTGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R + P+ +LS + +ED+V+ L+ GADD+I KPF+ +E++AR+ A +RR + Sbjct: 64 EFIAKVR-QHGTMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVK 122 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + V GDL ++ + TV +G+ + LT +E++++ LL T+E Sbjct: 123 KFSAPPEKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++ + ++V I LR KL + +I+TVWG G+ + + Sbjct: 183 QHVWGEDYFGDDNTVNVHISNLRSKLGKVSKQ-EFIKTVWGIGFKMAD 229 >gi|298292563|ref|YP_003694502.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296929074|gb|ADH89883.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 168/228 (73%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDRATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKGLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDTKTVEVAGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G N+IETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGHNFIETVWGRGYVLREMGEQE 228 >gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803] gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803] Length = 218 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ + + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|37548744|gb|AAN07017.1| putative response regulator [Bacillus subtilis] Length = 245 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D+K + I+ +L E + V DG+ D +ILD+ L D G+ Sbjct: 17 KVLIIDDEKEILELIKTVLIREGIDRVITASTARDGLAQFHQENSDLVILDIMLPDGEGY 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS DK+ GL G DDYI+KPF+ +E+ R++A +RR Sbjct: 77 DICKQIR-DISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 135 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S I G +N + G I LT KE ++ N ++KE Sbjct: 136 YLQPSQTGTVIKKGPFELNQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I +LR+K+ N +++ TV G GY Sbjct: 196 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 240 >gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 229 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 9/230 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILLIEDD A+A L+++ F + + G+ G+E +D +++D+ L G Sbjct: 1 MKHILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVMLPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F+++R +R K P+ ++S DK+RGL GADDYISKPF+ ELVAR++A R Sbjct: 61 FQIVREVRKKKDI-PILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARY 119 Query: 120 RGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I G L + + V ++G I LT KE++++ L+ + +K+ Sbjct: 120 ERLIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKD 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V + +LR+KL +IETVWG GY L+ Sbjct: 180 ALFERVWGLDAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRLK 229 >gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 229 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 232 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +++ L+S+ + V+ G +G+E+ + E I+D+ + + G Sbjct: 5 HVLIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEEIHLAIIDIMMPRMDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTMKLR-EKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ V G L +N D V + G+ + LT EY+++ LL+ + E Sbjct: 124 FLEKLVPQENVHVIGGLEINEDTVEVTMDGNPVKLTPIEYKILLLLAKNPGRVFSSEEIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ I V + +R+K+ Y++ VWG GY L + + Sbjct: 184 ERVWQ-EKAINTDTIMVHVRNIREKIEIDPKKPKYLKVVWGVGYKLEKQS 232 >gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I L L+++ F G + + + ++ +ILD+ + G E Sbjct: 5 ILIVDDDKEIRDLISLYLEADRFYTDKAADGVEALIKLEEKKYSLVILDIMMPKKDGIET 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + +R PV L+ S D + GL GADDYISKPF+ EL+AR++A +RR Sbjct: 65 IIEIRKKYKM-PVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRYTIL 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I GDL +N + V V+G+ + LT EY+++E++ +N T E + Sbjct: 124 NLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELYEFI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I V I KLR+K+ + YI+TVWG GY + Sbjct: 184 WKEKYSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGYKI 226 >gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 232 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ ++ I++ LKS +N + G++ E Y D ++LD+ + I G + Sbjct: 7 KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R K + PV +++ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 ILKWIRKQKET-PVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSS 125 Query: 122 HAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V DLS++ + V I + KE++++ L+ KN T+E L ++ Sbjct: 126 ENIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LR+KL ++G + I+TVWG GY N Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--SSGEQWEIQTVWGVGYKFEVN 228 >gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 65 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 124 VSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR+K + I+T+ G GY L Sbjct: 184 FEGNERTLDVHMNRLREKFQEE-KSRFSIKTIRGLGYRLE 222 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E + + GE +EL F I+LD+ L + G + Sbjct: 4 KILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + STPV +L+ ++V G + GADDYI KPF+ E+V R++AI+RRS+ Sbjct: 64 VCKRLR-EEKSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L ++ DA V ++LT KEY+++ L+ + +E Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 L ++ +++ +D + +LR+KL+ N I TVWG GY Sbjct: 183 LLKDVWHYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGYKFE 232 >gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 7 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 67 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224 >gi|228913685|ref|ZP_04077312.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301052645|ref|YP_003790856.1| transcriptional regulator [Bacillus anthracis CI] gi|228845973|gb|EEM90997.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374814|gb|ADK03718.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 240 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K + + +E +LK E F +Y G+ GI +C+ D I+LD+ L D+ G+ Sbjct: 12 KILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVRPDLILLDIMLPDLDGY 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +R P+ LS + DK+ GL G DDYI+KPF+ +E+ +++A RR++ Sbjct: 72 SVCEQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GD++++ TV G ++LT KE+ ++ L N +K + Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLNLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+ V + LR+K+ + NY+ TV G GY L Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLVTVRGLGYKL 233 >gi|284034895|ref|YP_003384826.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814188|gb|ADB36027.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 236 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 4/233 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD A I L+ E V G I+ + D ++LD+ + + G + Sbjct: 4 RILVAEDDVKQAELIRRYLEREGHLTVVVHDGRAAIDEARRRSPDLLVLDVMMPKVDGLD 63 Query: 62 VLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 V R LR + P+ +L+ S+ +D + GL GADDY++KP+N ELVAR+R ++RR Sbjct: 64 VCRVLRADRGAGAGVPIIMLTARSTEDDLLLGLDLGADDYLTKPYNPRELVARVRTVLRR 123 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +R A+ + GDL ++ + V + G + +T E++++ L+ +++ L H Sbjct: 124 TRSRAEGEVYRAGDLEIDPERHEVRLAGDLVEVTPAEFKILACLAASPGRAFSRQQLLEH 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + IDV + LRKK+ A Y+ TV+G GY L E + Sbjct: 184 AFGFDHYVFDRTIDVHVMNLRKKIEPAPATPQYLRTVYGVGYKLAEKVGSDAS 236 >gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 235 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + IE+ L +E +N+ + G + +E K + D IILD+ + + G Sbjct: 10 ILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIMMPKLDGIRT 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS S DK+ GL GADDYI KPFN ELVAR+++ +RR Sbjct: 70 CIKIR-EDKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTSF 128 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I L +N + V V+ I LT +E+ ++E+L++ + L+ E Sbjct: 129 SEAKEINDEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIYE 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ YI+ VWG GY + + Sbjct: 189 KVWNEPFYNSENTVAVHIRNIREKIEINPKDPKYIKLVWGVGYKIEK 235 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L + + L+ E F+V + G G+++ + D +ILD+ + ++ G+E Sbjct: 8 RILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGWE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR PV +L+ + +D V GL+SGADDY++KPFN +EL ARIRA+ R Sbjct: 68 VCRRLR-EFSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G++ ++ + V V+G + LT EY ++ LL+ L E L ++ Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V+I LR+K+ + T WG GY L Sbjct: 187 HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRLAP 229 >gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 225 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED++ LA + L+ E + G +G+EL + D I+LDL L + G Sbjct: 1 MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMG 60 Query: 60 FEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 EV + L+ ++ PV +L+ D+V G + GADDY+ KPF+ EL+ R++A++R Sbjct: 61 MEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLR 120 Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R +I G ++++ + V V+G + LT E++++ L+ R ++++ L Sbjct: 121 RSLPDKPEGKVINVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRDLLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + +D I +LR KL A I+TV G GY + E Sbjct: 181 KNVWGYNYVGDTRTVDTHITRLRTKLGQAG---ELIKTVRGFGYKMEE 225 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G L D I+LD+ L D+ GF Sbjct: 29 RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGFT 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR A PV L+ + DK++GL G DDY++KPF EE+VARIRAI R Sbjct: 89 VTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMD 148 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++ DA V G + L+ E++++ L + + ++K L+H+++ Sbjct: 149 SVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVWE 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + I++ +I LR+KL+ K+ I T G GY+LR Sbjct: 209 YDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYMLRAE 252 >gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 266 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 6/241 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A+ + + L+ E + V + G +G+ L + +DA++LDL L + G E Sbjct: 25 RILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLMLPGVDGLE 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 85 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEA 144 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + +++ A+ V G R+ LT +E+ ++ + + ++ L Sbjct: 145 MARDVRADAGSLELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDLL 204 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 N ++ + E ++ I +LR K+ I TVW RGY + + + + Sbjct: 205 NAVWGYQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGYRFVADPQADAAQDEGE 264 Query: 236 A 236 A Sbjct: 265 A 265 >gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L G+L + + + V G I LT +E+ + +L ++ L Sbjct: 120 KKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGASG---EYIKTIYGVGYKL 221 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 246 >gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium glutamicum ATCC 13032] gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++LA + +L+ E F+ + G + E D ++LDL L + G + Sbjct: 3 RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKELR-SVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ G + +++D+ TV V G + + KE+ ++E L LT+ Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 QLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231 >gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] Length = 231 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 2/229 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A + L E + V + G G L +D +ILD L G + Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR R +TPV L+ ++ ++V GL +GADDY++KPF +EL+AR+RA++RR Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ D+ +L+ + V G + LT KE+ ++ L++ + ++D Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + ++V + +LR KL A G I+T+ GRGYVL + DE Sbjct: 184 SYDGLSNTLEVHVKELRHKLE--ACGPRVIQTLRGRGYVLETTSDDEGA 230 >gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED++ LA I L+ E + + G G+E + D I+LDL L + G Sbjct: 1 MKTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMG 60 Query: 60 FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 E+ + L+ + + P+ +L+ D+V G + GADDY+ KPF+ EL+ R++A++R Sbjct: 61 TEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLR 120 Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R+ I G ++++ + V V G I LT E++++ L+ R ++++ L Sbjct: 121 RTMPEKAQGKCITIGLVTIDTERHMVSVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + +D + +LR KL A I+TV G GY + E Sbjct: 181 QNVWGYNYVGDTRTVDTHVTRLRTKLGEAG---EMIKTVRGFGYKMEE 225 >gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 221 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L + L+ + V + D GEDG L +DA++LDLGL I G Sbjct: 1 MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATENYDAVVLDLGLPTIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL I T+ G GY L E + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----VITTIRGLGYSLDEPGR 221 >gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42] gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + ++D +ILD+ L + G Sbjct: 1 MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R S P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR R Sbjct: 61 TICRKIR-ETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 Q++ S+N + V + G + LT KE+ ++ L+ ++E Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKL ++ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--SSEEKPFLYTVWGVGYKFDED 227 >gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 290 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE+ +E+ + D ++LD+ L + GF V Sbjct: 28 ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDGFAV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR P+ LS + +I ++V GL GADDYI KPF+ +EL ARI I+R Sbjct: 88 CRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q ++ GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 147 SATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 225 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 127/224 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ LL+EDD+ +A S+ L N+ + V GE+G + +++D I+LD+ L + G Sbjct: 1 MKFLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR PV +L+ S DKV GL +GADDY+ KPF+ +EL+ARIRA++RR Sbjct: 61 ELCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L ++ TV + + +T KEYQ++EL L++ L+HL+ Sbjct: 121 TTISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + V I +R+KL A ++IETV+G GY L +N Sbjct: 181 SIDPPGQDTVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224 >gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 229 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27] gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8] gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27] gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A IEL L++E + V G G+ + + +ILDL L + G EV Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ IL+ +EDKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 69 AKRIR-KTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 127 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V RI L+ KE++++ELL+ ++ ++ G Sbjct: 128 ITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVWPG- 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 187 YQGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 227 >gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01] gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01] Length = 224 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A IEL L++E + V G G+ + + +ILDL L + G EV Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ IL+ IEDKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 66 AKRIR-KTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVSPA 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ G Sbjct: 125 ITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVWPG- 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL AAG + I TV G GYVLRE+ Sbjct: 184 YQGGSNVVDVYIGYLRKKLE-AAGERRLIHTVRGVGYVLRED 224 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 128/227 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A+++ +L ++N+ V V G+ + + Y++D I+LD+ L + G Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +++G +S +K GL +GADDY+ KPF+ EELVARIRA++RR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ +G L ++ + + + LT KE+ ++EL + M L HL+ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D P+ + + I LR+KL + +ETV+G GY L+ +D Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEED 227 Score = 68.5 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ +L + E + D +ILD+ L I G E Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + R +R + P+ L+ S E + GADD++SKP Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPI 500 >gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 237 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ L+ +++ L+ + G ++L + D ++LDLGL + G EV Sbjct: 12 VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRATAPDVVVLDLGLPGMDGVEV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR V +L+ + DK+ GL GADDY++KPF+ ELVARI+ ++RR R Sbjct: 72 CRQLRTFSDCY-VLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S++ G L+V+ ++ VE+ + LT E+ +++ L+ L + + + Sbjct: 131 GAGTTASVLRIGALTVDQSSRRVELDASPVELTRTEFDLLQALAEHPGRVLNRRQLTDAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I LRKKL + +++TV G GY + Sbjct: 191 WGEDWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 233 >gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP [Sphingobium japonicum UT26S] gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP [Sphingobium japonicum UT26S] Length = 221 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L + L+ + V + D GEDG L +DA++LDLGL I G Sbjct: 1 MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATESYDAVVLDLGLPTIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL I T+ G GY L E + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----VITTIRGLGYSLDEPGR 221 >gi|254459879|ref|ZP_05073295.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2083] gi|206676468|gb|EDZ40955.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium HTCC2083] Length = 238 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 148/237 (62%), Positives = 184/237 (77%), Gaps = 1/237 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SI++ML N NVY T GE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSKSIDMMLTHANLNVYTTSFGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E K++G GADDY++KPF+++EL+ARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGSDDTESKIKGFGFGADDYLTKPFHRDELIARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV+ +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIHTGKIAVNLDAKTVEVENATVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK-DETCEYLETA 236 G DEP++KIIDVFICKLRKKL A G +YIETVWGRGYVLR+ +E L A Sbjct: 181 GMDEPKLKIIDVFICKLRKKLCEATGEDSYIETVWGRGYVLRDPVDMEEPAPQLAVA 237 >gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT +Y ++ L++ KN T E Sbjct: 125 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTKYDILFLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1] gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1] Length = 232 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ EL+AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 126/229 (55%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + +L + V + GEDG L + +DA++LDLGL I G Sbjct: 1 MRILVVEDDADLRRQLADVLSQSGYAVDLAADGEDGQFLGETEPYDAVVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL++ R + PV IL+ +KV G +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 SVLKSWRKEGKTFPVLILTARDQWSEKVSGFDAGADDYLTKPFITEELLARLRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ + I G L V+ A V G I LT EY+++ L + + + + H+YD Sbjct: 121 GHSAATIECGKLMVDTRAARATVNGEPIKLTAHEYRVLSYLMHHQGRVVPRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VFI +LR+K+ I+T G GY L +DE Sbjct: 181 QDFDRDSNTIEVFIGRLRRKIGQD-----RIQTERGLGYRLIVP-EDEA 223 >gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601] Length = 247 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 125/242 (51%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + PV +L+ +S +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + + E Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVPSSAEGAS 242 Query: 235 TA 236 T+ Sbjct: 243 TS 244 >gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 127/224 (56%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59 ++L+IED++ + ++ L++ + V V + G+ G+E D I+LD+ L DI G Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 WSLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRT 121 Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN Sbjct: 122 YGASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 VWGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 222 >gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 225 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ + V V + G G+ L E+D I+LD+ L + G+ Sbjct: 1 MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR +TPV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVVKTLRT-TRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ G RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFPV-KLIHTVRGVGYVLE 220 >gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ +A +E L E ++V V G + FD I+LD+ L G Sbjct: 2 IRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV R LR A + TP+ +L+ + +KV GL+ GADDY++KPF +EL ARI+A+ R S Sbjct: 62 EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GD+ V+ + ++G + LT E++++++ + L+++ + + Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +I+D I LR+K+ + Y+ V G GY Sbjct: 182 GRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223 >gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++LA + +L+ E F + G + D ++LDL L + G + Sbjct: 3 RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGGND 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR PV +++ S DKV GL+ GADDY++KP++ EL ARIRA++RR + Sbjct: 63 VCKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + +++D V V + L KE+ ++E L + LT+ ++ Sbjct: 122 ADSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + + + TV G GY L Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKLE 227 >gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 229 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F + + G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +ALR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 64 CKALRSRSGV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVEN 122 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G + ++++ V+V G+ + L KE+ ++E L LT+ ++ Sbjct: 123 EADLASDNGVLEAGPVRMDVERHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + ++ TV G GY L Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIESDPAKPEHLVTVRGLGYKLE 228 >gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator protein [Photobacterium profundum SS9] gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator protein [Photobacterium profundum SS9] Length = 231 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ L + V + G +G+ + +D IILD+ L + G+ Sbjct: 1 MKILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR +++STPV +L+ +ED+V+G + GA+DY+ KP+ EL+ARI+ + R Sbjct: 61 QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++++ + + + ++ +T I LT KEY ++ELL ++ L++ Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D + + +IDV + +LR K+ + K I T+ G GY L + Sbjct: 181 SLVWDMNFDSDTNVIDVAVKRLRSKI-DRPFEKELIHTIRGMGYKLED 227 >gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 242 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 7/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ + V + G G L D I+LDL L + GF Sbjct: 4 RILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFT 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ +S +KV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 64 ICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRA 123 Query: 120 RGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L++ + V G I LT E++++ L R T++ Sbjct: 124 DRIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ + +++ I V + LR KL YI+TV+G GY L + E Sbjct: 184 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRNPRYIKTVYGAGYCLELPSHIEPP 239 >gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 223 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E+VAR++AI R S Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN ++ Sbjct: 122 GESEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 220 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E + +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] Length = 221 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L I LK N++V GE+ ++ + E+D II D+ + ++ G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + LR +K +TPV +L+ ++EDK+ GL SGADDYI KPF +EL+ARIR ++RR+ Sbjct: 61 EFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V G I LTGKEY+++E L K + L+++ LNH++D Sbjct: 121 GLATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + I+DV I +RKKL + K I T G GY Sbjct: 181 YDYDGASNIVDVIIKNIRKKL-DNGTDKTIIYTKRGLGY 218 >gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP [Corynebacterium pseudotuberculosis C231] gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis 1002] gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis I19] Length = 237 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F+V + G + +E+ K ++ DA ILD+ + + G+E Sbjct: 10 RILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDGYE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGSS 129 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +L D V G + L+ E+ ++ L L ++K L+H Sbjct: 130 VEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILDH 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ I+TV G GYVLR+ Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKI--DTHDPQLIQTVRGVGYVLRKP 234 >gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 123/231 (53%), Gaps = 7/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD + + ++ + E FNV + + E + D I+LD+ L D G Sbjct: 1 MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ L+ PV L+ S D + GL+ GADDYI+KPFN L+ARI+A+ RR Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GD+ +++++ ++ G + L KE+++++L+ ++ L+ + Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + + +DV I KLR+K+ + +I+TV G GY L +++ Sbjct: 181 WGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLVIPEDEKS 226 >gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ ++L L E + V GE G++L + + D +++D+ L + G E Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ ILS + DKV GLQ GADDY+ KPF +EL+ARI A++RR R Sbjct: 64 VVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G + ++LDA+ V G + LT +E+ ++ + ++E + Sbjct: 124 RGEGVQPKAIRRAGGIELDLDARRALVDGRALDLTSREFDLLAFFVTHPDRVYSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ R + +D F+ +LR + + A ++ETV G GY Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRF 228 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A + L L+ E + V V + G DG++ + FD ++LD+ L ++ G E Sbjct: 5 KILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +TP+ +++ S+ DKV GL GA+DYI+KPF+ EEL+ARIRA +R + Sbjct: 65 VLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIN 124 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q DL+VN + ++ G + LT +EY ++ L + LT++ L + Sbjct: 125 EQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ + K I TV G GYV++ Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227 >gi|154686246|ref|YP_001421407.1| YvrH [Bacillus amyloliquefaciens FZB42] gi|42491108|emb|CAE11245.1| YvrH protein [Bacillus amyloliquefaciens FZB42] gi|154352097|gb|ABS74176.1| YvrH [Bacillus amyloliquefaciens FZB42] Length = 267 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D+K + I+ +L E + V DG+ D +ILD+ L D G+ Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ LS DK+ GL G DDYI+KPF+ +E+ R++A +RR Sbjct: 99 DICKQIR-DISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S I G +N + I LT KE ++ N ++KE Sbjct: 158 YLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQ 217 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I +LR+K+ N +++ TV G GY Sbjct: 218 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 222 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK AH I L N+ V D G+DG+ L ++D +I+D L I G Sbjct: 1 MRILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A P+ ILS + S+++KV GL+ GADDY+ KP+ EL+ARI ++RR++ Sbjct: 61 SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +NL+ TV +I L E++++ L + +T+ M L +++ Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P+ I+DV I +LR K+ + K I+T+ G GY + E Sbjct: 181 YNFDPQTNIVDVHISRLRSKI-DRGFDKELIKTIRGIGYKIEE 222 >gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens DSM 7] gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens TA208] gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + ++D +ILD+ L + G Sbjct: 1 MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R S P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR R Sbjct: 61 TICRKIR-ETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 Q++ S+N + V + G + LT KE+ ++ L ++E Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKLS+ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLSSD--EKPFLYTVWGVGYKFDED 227 >gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 218 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ G DDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + ++ D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 ELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRVM 119 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + V V G I LT +E+ + +L + ++ L Sbjct: 120 KQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +D+ + +LRKKL + I+T++G GY L Sbjct: 180 KVWGFEYTGNTRAVDIMVQRLRKKLGASGDS---IKTIYGVGYKLE 222 >gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E + V ++ GE+ ++ + +F+ I++D+ + + GF Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFG 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ + P+ L+ S +DK++G SG DDYI+KPF+ EL R+ AI++R Sbjct: 64 AIKGIK-KLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L T+ + + I LT KE+ ++ LL+ K Sbjct: 123 SVVEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KLS+ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] Length = 226 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+AL+ I ++L+++ F+ G +E + D ++LDL L I G + Sbjct: 4 RILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGIDGIK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V L A+ PV +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R + Sbjct: 64 V-CKLISAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRPNET 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 HA + G++++++ V + LT E+ ++ ++ + ++E L ++ Sbjct: 123 HAAETLQVGEVTIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQLLEAVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ I+TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGYK 221 >gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila SL1] gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family [Halorhodospira halophila SL1] Length = 229 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD A+ + L+ + F V G E + D I+LD L + G E Sbjct: 4 RILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVSGVE 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 R L+ P+ +L+ EDKVRG SG DDY++KPF+ EL AR++A+ R Sbjct: 64 WARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRRT 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + + L ++ + V G + L EY+++ + T+ L+ + Sbjct: 124 APSTADTPLEAAGLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLDQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I +LR K+ G ++TV G GY E Sbjct: 184 WGTNVYVEERTVDVHIRRLR-KILATTGHDGLVQTVRGAGYRFSEQ 228 >gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V GE+ +++ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGEIINLTKTEYDILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + +D IILD+ L + G Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR + Sbjct: 61 TICRKIR-ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQ 119 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + +I + ++N + V + G + LT KE+ ++ L ++E Sbjct: 120 ATGKAVIDEDMIESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKL A+ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227 >gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI L ED++ L I L + ++V G I++ E+DA+ILD+ + GF Sbjct: 1 MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR +TPV L+ ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S Sbjct: 61 TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DLS++ + V G I L+ KEY M+E + L++EM +H+++ Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LRKK+ + K I TV GRG+++RE Sbjct: 181 FDYEGGTNIVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMREE 223 >gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD1] gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD1] Length = 225 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVLKRLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V I +LR K+ + I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPI-KLIHTVRGVGYVLEP 221 >gi|148550755|ref|YP_001260194.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii RW1] gi|148503174|gb|ABQ71427.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii RW1] Length = 233 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 146/227 (64%), Positives = 185/227 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD +A ++ELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ GF Sbjct: 1 MRVLLIEDDNTVASALELMLSAEGFNVYSTDLGEEGLDLGKSYDYDLICLDLNLPDMHGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR+ ++ TPV ILSG+S ++ KVR GAD+Y++KPF+K ELVARI A+VRRS+ Sbjct: 61 DVLKKLRMGRVETPVLILSGISELDSKVRAFAMGADEYLTKPFHKVELVARINAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I G ++VNLD K EV G RIHLTGKEY M+ELL+LR+ +TLTKEMFLNHLY Sbjct: 121 GHAESVIRIGKIAVNLDGKVAEVDGARIHLTGKEYAMLELLALRQGSTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL+ A GG+NYIETVWGRGY+LR ++ Sbjct: 181 GIDEPELKIIDVFICKLRKKLTLACGGENYIETVWGRGYMLRAPGEE 227 >gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 11379] Length = 246 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 11/238 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D + + + Y D I+LD+ + + G Sbjct: 10 RILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 HAQSLIVTGDL----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + ++L + V R+ LT E+ ++E+ LT+ Sbjct: 130 ASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 189 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 E L ++ EP +DV++ LR+K + A G + TV G GY LR E Sbjct: 190 EQILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGGGEA 246 >gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + IE+ L + +NV + G++ +++ K +ILD+ + + G EV Sbjct: 5 ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++ P+ +LS S DK++G+ +GADDY++KPFN EL R+++++RR+ Sbjct: 65 CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G + ++ + +V V G+ I LT +E+ ++ LL+ K + E Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + ++R K+ G+ I TVWG GY + + Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230 >gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +++ L E ++V ++ GE+ ++ + +F+ I++D+ + + GFE Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ L+ S +DK++G SG DDYI+KPF+ EL R+ AI++R Sbjct: 64 AIKRIR-RLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I DL +NL T+ + + I LT KE+ ++ LL+ K Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KLS+ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 7 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 67 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224 >gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 220 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + L+ + V + GEDG L +DAIILDLGL ++ G Sbjct: 1 MRVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R TPV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S ++ GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGQD-----VITTIRGLGYSLDDPA 220 >gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 244 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ + + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 SGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAKD 227 ++ + +++DV I +LR KL + G I T G GY + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGYLFQRIVEPGEE 242 >gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT] gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 227 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+K +A ++ L+ E F V T G+ + D IILDL L +I G++ Sbjct: 4 KILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + DK+ GL+ GADDY++KPF +ELVAR++ +RRS Sbjct: 64 VCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V L ++ + + V++ G + LT E+ ++ L++ ++ L+ L Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LRKK+ YI TV G GY +++ Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKD 225 >gi|320008511|gb|ADW03361.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ L +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLATSLARGLTAEGFAVDVVHDGLEGLHLAGQGVYDLVVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ALR A TP+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RICAALRAAGHETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G L ++ A+ V + LT KE+ ++E L R ++K L H++D Sbjct: 121 GSASPVLTAGTLRMDTAARRVHRGEDEVTLTTKEFAVLEQLVRRAGEVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++V+I LR+KL AA I TV G GY L Sbjct: 181 FAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRLE 217 >gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 230 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + L D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVSGIEV 64 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRIR 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I GD+ ++ A V+ G IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK L+ ++ G + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGSSDG-DPIRTVRSAGYSLDLDA 229 >gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 229 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++A+ + + L+ E F+V G+ + D ++LD+ L DI GF Sbjct: 6 RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGFA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V + LR A P L+ + EDKV GL G DDY++KPF ELVAR+RAI+RR Sbjct: 66 VCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGM 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DL ++ + + V G + LT EY+++ L + LT+ L+H++ Sbjct: 126 ADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++++ ++ LR+K+ +A I TV G GYVLR Sbjct: 186 GHDFGGDARVLETYVSYLRRKIDDAP--PALIHTVRGVGYVLR 226 >gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 269 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + K E FNV GE+ + + D ILD+ + + G V Sbjct: 51 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 110 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 R +R +TP+ +L+ S EDK+ G + GADDY++KPF+ + L+A+ +A+ R Sbjct: 111 CRNIR-EVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 169 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++++ L++N + V++ G + L+ KEY ++ LS + L+++ L++++ Sbjct: 170 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 229 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR+KL + A NYI TV G GY Sbjct: 230 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 267 >gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 226 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 6/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L+ ++L L + V GE+ L + +DA++LDLGL + G Sbjct: 1 MRILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R I+TPV IL+ S +KV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ + + + + + + HLYD Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + + I+VFI +LRKKL IETV G GY L + ET E Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLGA-----ERIETVRGLGYRLTP-LEGETTEG 226 >gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + IE+ L +E F V G + +E K D IILD+ + + G Sbjct: 7 ILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIMMPKLDGIRT 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS S DK+ GL GADDY+ KPFN ELVAR+++ +RR+ Sbjct: 67 CLKIREEKKM-PIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRTTSF 125 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D N + V V + LT +E++++++L+ L+ E Sbjct: 126 NEPREENDDEICIDGLVINTANREVFVDDKFVRLTPREFEILKVLATNIGRVLSTEQIYE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++D + V I +R+K+ YI+ VWG GY + + Sbjct: 186 NVWDEPFFNSDNTVAVHIRNIREKIEINPKEPKYIKLVWGVGYKIDK 232 >gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 243 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L + V GE+ I + D ++LD+ + + G+ Sbjct: 7 RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 243 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 120/237 (50%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ ++ + D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGVPGIPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] Length = 236 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + + + N + D G+ G+E + + D ++LDL L + G V Sbjct: 5 VLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLMLPGMDGLSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV +L+ S+ D+V GL+ GADDY++KPF+ EL AR++A+ RR Sbjct: 65 CREIRSGPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALFRRVDAM 124 Query: 123 AQSLIVTGDL-----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + S T ++ + V V + LT +E+ ++ + ++ Sbjct: 125 SSSSGETSGPEELGELDTEGLRIDPTRRRVFVWEQEVELTAREFDLLWHFASHPGRVFSR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ E ++ I +LR K+ +IETVWG GY R+ Sbjct: 185 VQLLDKVWGYNHEGYEHTVNTHINRLRGKIEQDPARPEFIETVWGVGYRFRD 236 >gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] Length = 239 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A PV +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ ++ G +NL + + G + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSTAEKMVTFGSYQLNLATRELSRDGEPVALTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +N + IDV + +LR+ L Y++TVWG GYV + E Sbjct: 186 MNLARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDGDGE 239 >gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 235 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ +++ LK + F+V D G+ +++ Y+ DA ILD+ + + GF Sbjct: 10 KVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDGFS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 +L LR PV L+ +ED++ GL GADDY++KPF+ EE++ R+R I+R Sbjct: 70 LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I DL+++ D V G + L+ E++++ L + L+K L+H+ Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ ++ LR+K+ I TV G GYVLR+ Sbjct: 190 WNYDFGGDGNVVESYVSYLRRKI--DTDDPRLIHTVRGVGYVLRKP 233 >gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ ++L L E + V GE G++L + + D +++D+ L + G E Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ ILS + DKV GLQ GADDY+ KPF +EL+ARI A++RR R Sbjct: 64 VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G + ++LDA+ V G + LT +E+ ++ + ++E + Sbjct: 124 RGEGVQPKAIRRVGGIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ R + +D F+ +LR + + A ++ETV G GY Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRF 228 >gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D+ + ++ L E + V G + +E+ + IILD+ + + G Sbjct: 4 IKILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPRMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++V R +R P+ +L+ S D+++G G D+YISKPF+ + LVAR+ AI R Sbjct: 64 WQVCREVR-QSSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G + ++ A V++ G I L+ KE++++ + L++E LN++ Sbjct: 123 NVLGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D + + ID + KLR KL NYI+T+WG GY + Sbjct: 183 WDYDYFGDARTIDTHVKKLRSKLGEKG---NYIKTIWGMGYKFEVDE 226 >gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + +E L+ E F + G++ ++ K ++LD L ++ G +V Sbjct: 5 LLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPEMSGIDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + + + DK+ GL+ GADDYI+KPF+ EL ARIR+++RR G Sbjct: 65 CRELRKTSHVGIIMV-TAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRIEGQ 123 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL+++ V +G I LT E++++ L+ + ++ L +++ Sbjct: 124 DNQEELMKRGDLTISEAQCRVWKRGSEISLTPTEFKLLLTLAAKPGVVYSRLQLLQSIFE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D I +LRKK+ + YI+TV+G GY E Sbjct: 184 DDLFNDERTVDAHISRLRKKIEDDPSRPVYIQTVYGFGYRFGEQ 227 >gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++ + + L+ E ++V G G+ D ++LD+ L ++ GF+ Sbjct: 7 RILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 VL+ LR TPV +LS DK+ GL GADDY+ KPF +EL+ARI+A+ RR Sbjct: 67 VLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRHP 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GD+ V++ KTV G + LT +E++++ T ++E L+ + Sbjct: 127 ASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +D F+ +LR K + T+ G GY Sbjct: 187 FDYEGSARTVDNFVRQLRLKFEPDPEAPRHFLTIRGLGYRF 227 >gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V+GH + LT EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVALDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL I+TV G GY+L D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPPAD 222 >gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 118/219 (53%), Gaps = 4/219 (1%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 ED++ + I+ L++ N+ + G D +E+ K D I+LD+ L G++V + + Sbjct: 2 EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61 Query: 67 RVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--GH 122 R + + +++ S DK+ GL+ GADDYI+KPF+ EL+AR++A++RR+ + Sbjct: 62 RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLLQN 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ V+ D + ++ LT KE+++IE+L K +T+E L+ ++ Sbjct: 122 NSRMYKFENIMVDFDQHKLFKDNKKVDLTLKEFELIEILVKNKGKIMTREYLLDKVWGYE 181 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I LRKK+ +IET+ G GY Sbjct: 182 YVGETRTIDVHIRHLRKKIELDDKRPKFIETIRGVGYRF 220 >gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6] gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 244 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++++DD + + L E F V + + + + D I+LDL L G Sbjct: 11 RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLMLPGEDGLS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 71 ICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRRPV 130 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G +L + + G I LT E+ M++ L L+++ Sbjct: 131 MEAPGAPSREAQSVTFGPFEFDLALRRLTRDGEVISLTTGEFSMLKALVRHPRQPLSRDK 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + YI+TVWG GYV + Sbjct: 191 LAQLARGREFEPFDRSLDVQVSRLRKMIEPDPSQPRYIQTVWGVGYVFVPDG 242 >gi|170751941|ref|YP_001758201.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658463|gb|ACB27518.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 173/228 (75%), Positives = 198/228 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPMDGE 228 >gi|89054996|ref|YP_510447.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864545|gb|ABD55422.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 238 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 154/225 (68%), Positives = 185/225 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIE+MLK N NVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIEMMLKHANLNVYSTDLGEEGMDLAKLYDYDIILLDLNLPDVSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A++ TP+ ILSG+ E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRHLRTARVDTPILILSGLDDPENKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG +SVNLDAKTV+V G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIDTGRISVNLDAKTVDVAGTPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKLS A GG YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDTYIETVWGRGYVLRDPV 225 >gi|49477046|ref|YP_035262.1| two-component response regulator; MrsR2 protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144318|ref|YP_082509.1| response regulator [Bacillus cereus E33L] gi|49328602|gb|AAT59248.1| probable two-component response regulator; probable MrsR2 protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977787|gb|AAU19337.1| response regulator [Bacillus cereus E33L] Length = 240 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K + + +E +LK E F +Y G+ GI +C+ + D I+LD+ L D+ G+ Sbjct: 12 KILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDGY 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +R P+ LS + DK+ GL G DDYI+KPF+ +E+ +++A RR++ Sbjct: 72 SVCEQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GD++++ TV G + LT KE+ ++ L N +K + Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+ V + LR+K+ + NY+ TV G GY L Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ LA I + +E + V V G G+ L + +D IILD+ L + GF Sbjct: 1 MKILLVEDEERLASFIRKGISAEGYEVEVAHDGRTGLSLFRRDIYDIIILDVNLPHMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + PV +L+ + S+ DK G +GADDY++KPF +EL+ R+RA+ RR Sbjct: 61 DLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ DL +NLD+KTV G RI LT +EY ++E + L K +++ ++ Sbjct: 121 SRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +IDV++ LRKK+ + + T+ G GYVLRE+ Sbjct: 181 LNFDNNSNVIDVYVSYLRKKI-DKGFSPKLLHTIVGMGYVLRED 223 >gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family protein [candidate division TM7 single-cell isolate TM7c] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT--DIP 58 MRIL++ED+K LA +I LK+E + + + +G + +DA+I+D + Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++L+ LR ISTP +L+ + K+ GL +GADDY++KPF +EL+AR+RAI+RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ G L ++ +TVE +I LT KEY +++ L TL+KE + H+ Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++ +I LRKK+ YI+TV G GY L E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKV-KYIKTVRGIGYRLEE 224 >gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG+ L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +V+++LR A + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + I+TV G GYVL + Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-TPKLIQTVRGMGYVLEDPE 225 >gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 254 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 94 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G++ +N V + + L KE++++ L + T ++E + ++ Sbjct: 153 VSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR+K + I+T+ G GY L Sbjct: 213 FEGNERTLDVHMNRLREKFQEE-KSRFSIKTIRGLGYRLE 251 >gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] Length = 221 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 85/219 (38%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ L I LK N++V G++ ++ + E+D II D+ + ++ G+ Sbjct: 1 MRILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + LR K +TPV +L+ ++EDK+ GL SGADDYI KPF +EL+ARIR ++RR+ Sbjct: 61 EFIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V I LTGKEY+++E L K + L+++ LNH++D Sbjct: 121 GLATNIIQIEDVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E I+DV I +RKKL + I T G GY Sbjct: 181 YNYEGASNIVDVIIKNIRKKL-SNGEDSTIIYTKRGLGY 218 >gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC 19977] gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVARIRA +RR+ Sbjct: 64 VCRVLRSDSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ + +++ A V +G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|108798318|ref|YP_638515.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119867415|ref|YP_937367.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433983|ref|YP_001069674.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768737|gb|ABG07459.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119693504|gb|ABL90577.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233783|gb|ABN97183.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDPSLAEMLTIVLRGEGFDTAVVGDGTQALSAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ GD+ +++ A V QG +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAELLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+K +A ++ L+ E F V T G+ + D IILDL L +I G++ Sbjct: 4 KILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + DK+ GL+ GADDY++KPF +ELVAR++ +RRS Sbjct: 64 VCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V L ++ + + V++ G + LT E+ ++ L++ ++ L+ L Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LRKK+ YI TV G GY +++ Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKD 225 >gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L+ + V G + + DA+I+D+ + + G Sbjct: 3 MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR P+ IL+ +++D+V GL +GADDY+ KPF +EL+AR+RA+ RRSR Sbjct: 63 EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 LS + + V RI LT E+ ++ + L + L Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++V+I LR+K + G I TV G GYVLRE Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEARLIHTVRGVGYVLRE 229 >gi|317061728|ref|ZP_07926213.1| DNA-binding response regulator [Fusobacterium sp. D12] gi|313687404|gb|EFS24239.1| DNA-binding response regulator [Fusobacterium sp. D12] Length = 231 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD + + I K E + V G + ++ K FD +ILD L + G + Sbjct: 7 KVLIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQ 66 Query: 62 VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 + + +R V +++ + ED + G GAD+Y+ KPF+ EL+AR + +++ Sbjct: 67 LTKIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQN 126 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H+++ L ++ V +G + L+ KEY ++ L + + +T+E L+ + Sbjct: 127 KIPHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDEV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV+I KLR+KL G I+TV G GY L E Sbjct: 187 WGSTYYIGDRTVDVYISKLREKL---PGISTSIKTVKGVGYKLEE 228 >gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 7/237 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD A++ + + L+ + V+ G G L + D I+LDL L + GF Sbjct: 3 RILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHTEILNYGPLTLIPERFETIWFNQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++ + +++ I V + LR KL YI+TV+G GY L +ET E Sbjct: 183 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNSEETAE 239 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL ++DD+A+ S+ L ++V + + G + +E+ DA++LD+ + + G Sbjct: 1 MRILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+ARIRA++RR++ Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL+++ + V I LT E+ ++E+L LT+ L Sbjct: 121 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GESRLIHTVRGVGYVLRE 225 >gi|315634592|ref|ZP_07889876.1| two component response regulator [Aggregatibacter segnis ATCC 33393] gi|315476540|gb|EFU67288.1| two component response regulator [Aggregatibacter segnis ATCC 33393] Length = 223 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + I++ L F V G+ G+ + +DA++LDL L + G Sbjct: 1 MRILLIEDDALIGNGIQIGLTKSGFAVDWFTDGKSGLAAAQAAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+A R PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 DVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALVEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA +I + + + + V + I LT +EY+++EL L K LT++ LY+ Sbjct: 121 GHASPIIQHSCVKFDPNQRKVLLNEQEIALTTREYKLLELFMLNKERVLTRDFIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 DE ++V I LR+KL K +I TV G GY L +N ++ Sbjct: 181 WDDEVNSNALEVHIYNLRQKLG-----KQFIRTVHGVGYALGKNDEE 222 >gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E ++ + + GE + + Y+ + ++LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRAKSDV-PIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L VNL +V G +I + KE +++ L+ N T+E Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L++++ + + +DV + +LR+K+ + I TVWG GY Sbjct: 185 LLDNIWGYEYVGDTRTVDVHVKRLREKIKDKPT--WRIATVWGIGYKFE 231 >gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A +E L+S F V + ++L FD +ILDLGL G + Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR S P+ IL+ I DK+ + GADDY++KPF EEL+ R++A +R + G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ ++L + V+V + L+ +E+ + E L++E L+ Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P I+DV++ LRKKL N IETV G GY L+ Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN-----ELIETVRGMGYRLK 222 >gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 231 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231 >gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K+++ ++ L+ E + VY T+ G DGIE+ + D +ILDL L DI G EV Sbjct: 4 ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + + S++ DK+ GL GAD+Y++KP + EL AR+ A+ RR Sbjct: 64 CKILRKISDVYIFML-TAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGCK 122 Query: 123 AQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I D +++D + V++ G I+LT E+ ++ +L+ + T+E + + Sbjct: 123 KENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAFG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDV I LRKK+ YI TV GY + Sbjct: 183 MEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKFGD 225 >gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 231 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 14/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 MR IL++EDD + + L FNV D GE+ ++L DA++LDL L Sbjct: 1 MRKPSILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGK 60 Query: 58 PGFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV RA+R + P+ +L+ S +D V GL+ GADDY++KPF+ L+AR+ A Sbjct: 61 DGNEVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAA 120 Query: 116 VRRSRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +RR+ I + ++ V V G IHLT E+ ++ LL+ R Sbjct: 121 LRRTPEPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ ++ + + +DV I LRKKL +A IETV G GY +RE Sbjct: 181 SRQQIIDQVRGYDYSITPRAVDVQIFGLRKKLGSAG---TCIETVRGIGYRIRE 231 >gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 230 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L++ F + + G+D +E + FD +ILDLGL D GF+ Sbjct: 3 RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR + P+ IL+ + DKV GL++GADDY++KPF EL+AR+RA +R Sbjct: 63 ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQPS 122 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 T ++ +NL + V+V + L+ KE+ ++E L++E L+ + Sbjct: 123 KNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P I+DV++ LRKKL + IETV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGSD-----RIETVRGMGYRL 220 >gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W] gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 128/238 (53%), Gaps = 16/238 (6%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 MR IL+++D+ ++ + L + VY G + +++ D IILD+ + Sbjct: 1 MRSHPPAILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVMMP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G+ V +A+R P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +R+R+I Sbjct: 61 KLDGYGVCQAVR-KASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSI 119 Query: 116 VRRS--------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 +RR + +I G ++V+ + + V RI LT E+ ++ELL+ Sbjct: 120 LRRMETTKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGE 179 Query: 168 TLTKEMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ FL+ ++ E + +++D+ I LR+KL +++G I TV G GY L+ Sbjct: 180 PISRSEFLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTLKP 237 >gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241] gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232 >gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756] gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756] gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +++ L+S+ + V+ G +G+E+ + E I+D+ + + G Sbjct: 5 HVLIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEEIHLAIIDIMMPRMDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTMKLR-EKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRK 123 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ V G L +N D V + G+ + LT EY+++ LL+ + E Sbjct: 124 FLEKLAPQENTHVIGGLEINEDMVEVSMDGNPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ I V + +R+K+ Y++ VWG GY + + Sbjct: 184 ERVWQ-EKAINTDTIMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 231 >gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++DD+ + I L L+ E F G + K IILDL L I G Sbjct: 6 KIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLMLPGIDGMT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+ DKV GL+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 66 LCKEVR-KFTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DLS++L V+ +G + LT KE ++ L N T++ L +++ Sbjct: 125 EENDGDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+K+ + K + TVWG GY Sbjct: 185 GYEYMGDSRTVDVHIKRLREKIGDGPNWK--LTTVWGVGYKFE 225 >gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory protein (C-terminal) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ +A I+ L+ E F V G + + + D IILDL L I G Sbjct: 1 MKILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIGGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + ++ P+ +++ + D V GL+ GADDYI KPFN ELVAR+R++ RR+ Sbjct: 61 DLCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRRTT 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +Q + TG + +N A V V+G I LT E+++++L + +++ L+ Sbjct: 121 DPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKLLQLFAGNPGVAFSRDKLLDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I +LR KL K +ET+ G GY R+ Sbjct: 181 IWGKDVFVTDRTVDVNIKRLRDKL---LSEKERLETIRGVGYRFRD 223 >gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L ++ L E++ G D ++ ++D IILD+ L I G Sbjct: 1 MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R TPV L+ IED+V+GL GADDY+ KPF+ EEL+AR+R ++RR Sbjct: 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ ++K V +I L+ KE+ ++E + +N L++E H ++ Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV+I LRKK+ G I TV G GYVLR+ Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGC-KLIHTVRGVGYVLRKEE 224 >gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 222 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V + G+ G+++ E+D +I+D + + G Sbjct: 1 MRLLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPALSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ L+ ++ED V GL +GA+DYI KPF EEL+ARIR +R Sbjct: 61 EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRT-T 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G LS+N V + LT KE+ ++E L K+ T+ + H++D Sbjct: 120 NRVEESLSVGSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +IDV+I LR+KL +A G N I+T+ G GY++RE+ Sbjct: 180 IHFDSDTSVIDVYITFLRRKLESAGCG-NIIQTIRGVGYIVRES 222 >gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L +E + V G++ K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDY+ KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ GD+ ++ D V G I L EY+++E ++E L+ + Sbjct: 124 SPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N G + I TV G GY L E Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLINPGGEPDPIRTVRGAGYALDE 227 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE+ +E+ + D ++LD+ L + GF V Sbjct: 28 ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGFAV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDYI KPF+ +EL ARI I+RR Sbjct: 88 CRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + + GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 147 SATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 2/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A + L+ + V G ++L ++D ++LD L D+ G Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R K PV ILS +++D+V+GL+ GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L V+ L+++ + V I L KE+ ++E + K L++ M + H++D Sbjct: 121 PTPERLQVSD-LALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + I+DV+I LR K+ + + I+TV G GY++ K A Sbjct: 180 MDYDGLTNIVDVYIRHLRSKI-DDRFQQKLIQTVRGIGYMIEAPDKPADRSTEPAA 234 >gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+GI + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ALR PV IL+ SS + KV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 DLVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDADGDL-KPIETVRGRGYRF 220 >gi|319898471|ref|YP_004158564.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae 73] gi|319402435|emb|CBI75976.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae 73] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 167/227 (73%), Positives = 195/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L DI G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+ KI TPV ILSGM IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL+VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227 >gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 243 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD A+A ++ L L++ + ++ G + +D ++LDL L G++V Sbjct: 5 LLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLMLPGADGWDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +LS S+ +V GL+ GADDY++KPF+ ELVAR+RA++RR Sbjct: 65 CRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALLRRIEQL 124 Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G ++ + + + LT +E+ ++ L+ ++ L Sbjct: 125 RSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPGRVFSRGELLQR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++ I +LR K+ + I TVWG GY E Sbjct: 185 VWGAAFDGYEHTVNSHINRLRTKIEDDPRDPRRIVTVWGVGYRFEE 230 >gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 218 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A IEL LK E ++VYV G++G++ + D I+LD+ L I G E Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +++ I D+V GL SGADDY++KPF EEL+ARIRA +R+S+ Sbjct: 65 ICRKIR-QHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL+++ + V+ I LT +EY ++E L K LT++ L +++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + I TV G GY E ++ Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKV-DDGFKTKLIHTVRGVGYKCEERENED 231 >gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 230 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + ++ ++ + + V GE+ ++ K + I+LDL L + G + Sbjct: 4 KVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMDGTK 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V +R + TP+ +L+ + +DK+ GL+ GADDYI+KPF+ +EL+AR++A+ RR Sbjct: 64 VCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTRRY 123 Query: 120 RGHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q ++ +L ++++ V + +I LT KE+++++LL+L + LT+ L Sbjct: 124 AAPSQPIMDTSLEISELYIDMENYEVFKRNEKIDLTLKEFELLKLLALNRGKVLTRNYLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ E + +DV I LRKK+ + YIET+ G GY ++ Sbjct: 184 DKIWGYEYFGETRTVDVHIRHLRKKIEDNDKKPQYIETIRGVGYKIK 230 >gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 222 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ +A +E KSE F V + ++ ++ Y F +ILDLGL D G EV Sbjct: 4 ILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGLPDADGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR ++ P+ IL+ ++DKV GL GADDY+ KPF+ +EL+AR++A +R Sbjct: 64 LHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFTPR 123 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + L ++L A+ V + L +E+ ++E L + L+++ L+ ++ Sbjct: 124 ATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P I+DV+I LRKKL + IETV G GY L+ Sbjct: 184 GYDYDPGSNIVDVYIGYLRKKLGSD-----LIETVRGIGYRLK 221 >gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens DSM 7] gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens DSM 7] gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens TA208] gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens LL3] Length = 239 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ ++ +L E + N+ E+ IE K D ++LD+ + + GFE Sbjct: 6 ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMSGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 66 ACTEIR-NYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTYK 124 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S + + V G + + + Q+++ + L+K+ Sbjct: 125 REEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I KLR+K+ +YI TV G GY + Sbjct: 185 VWGYPSYGDNNTVMVHIRKLREKIEKDPSDPSYIVTVRGLGYRFIPD 231 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 239 >gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3] gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3] gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 218 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L+ I LK E ++V E+G+ + FD IILDL L + GF Sbjct: 1 MKVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYENFDIIILDLMLPKMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ +LR KI TP+ +LS S+EDKV+GL GADDY++KPF+ EL+ARI+A + R Sbjct: 61 YIIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL ++L K V +I LT KEY++++ L +T+ M L +++ Sbjct: 121 DIDEISKLKYHDLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVF 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + E ++DV I +LR K+ + K I TV G GYVL+ N Sbjct: 181 DIDFDIESNVVDVQIHRLRDKI-DKGFDKRLIHTVRGFGYVLKAN 224 >gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 242 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ + + L FNV D GE+ + FD I+LD+ L I G E Sbjct: 5 HILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLPGISGLE 64 Query: 62 VLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 V +++R + +P+ +++ ED + GL+ GADDYI+KPF+ + LVAR++A+VR Sbjct: 65 VCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVVR 124 Query: 118 RSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + I +L ++ V QG I LT E+ ++ LL+ + T++ Sbjct: 125 RGQKAEAHSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + + IDV I LRKKL A IETV G GY ++ +++ Sbjct: 185 IIDAVRGYDFLVTPRAIDVQIFGLRKKLGAAGQS---IETVRGIGYKFKDPQEED 236 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A IEL LK E ++VYV G++G++ + D I+LD+ L I G E Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +++ I D+V GL SGADDY++KPF EEL+ARIRA +R+S+ Sbjct: 65 ICRKIR-QHSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL+++ + V+ I LT +EY ++E L K LT++ L +++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + I TV G GY E ++ Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKV-DDGFKTKLIHTVRGVGYKCEERENED 231 >gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + I + L++E F G+ L + E D IILD+ + + G E Sbjct: 4 RILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS S DK+ GL +GADDY++KPFN EL+AR+++ +RR + Sbjct: 64 AAFKIREEKNM-PIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I GDL +N + V V+G I LT KE+ ++ELL+ K T ++ Sbjct: 123 YNQRAEHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R+K+ + YI+T+WG GY + Sbjct: 183 VWQADALKSDSTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226 >gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 129/235 (54%), Gaps = 7/235 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L + +DAI+LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ + V V G ++ LT E++++ L +++ + HLYD Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + + I+VF+ +LRKKL I+TV G GY+L + + ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLDV-----EVIQTVRGLGYLLVPP--EAPRQETQS 228 >gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 243 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 119/237 (50%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E+ D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I + ++ + + V RI LTG E+ ++ELL ++ L Sbjct: 126 GSNPGIPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 ++ + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGEE 242 >gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + + Y I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCREIRAKSST-PIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L++NL +V GH + + KE +++ L+ N T+E Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGYKFE 231 >gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] Length = 238 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ +++ ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR +TPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EFKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++ + L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 NSEEGMNGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAK 226 L ++ +++ ID + +LR+KL + + I TVWG GY + Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPEE 238 >gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W] gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 218 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W] gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W] gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 231 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI] gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ + ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232 >gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271] Length = 218 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++++LR A+ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++L + G +I LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D + + +IDV I +LR K+ + I+TV G GYVL A ++ Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKI-DDHFEPKLIQTVRGMGYVLE--APEDAA 228 >gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E F+ + GED + + YE + I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDYI KPF+ +E++AR+RA++RR Sbjct: 66 VCREIRAKSGV-PIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124 Query: 122 HAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 NL +V G+ + + KE +++ L+ N T+E Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+KL + K + TVWG GY Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPQWK--LGTVWGIGYKFE 231 >gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 229 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIED++AL ++ L++E ++V V GE+G FD IILD+ L GF+ Sbjct: 4 HILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A ++TP+ +L+ + DKV GL+ GADDY++KPF EL+ARI A++RRS Sbjct: 64 VCRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSPM 123 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GDL V+L V +G + L+ +E+Q++ L + T+++ L + Sbjct: 124 RPPEKEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D+ I LR+K+ ++ TV G GY Sbjct: 184 WGYSASTYTRTVDMHIASLRQKIEPDPKQPQWVHTVPGLGYKF 226 >gi|28211448|ref|NP_782392.1| two-component response regulator [Clostridium tetani E88] gi|28203889|gb|AAO36329.1| two-component response regulator [Clostridium tetani E88] Length = 240 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK + + I L E F+V G +G + +F IILD+ L + G E+ Sbjct: 14 VLIVEDDKEINNLISKALIKEGFSVVQAFEGIEGYSKYRKIDFSIIILDIMLPYLNGIEI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R + P+ ++S D++ GL+ GADDYI KPF ELVARI++ +RR Sbjct: 74 MKKIREESVV-PIILISAKDEEYDRIIGLELGADDYIVKPFFVGELVARIKSQLRRYIDF 132 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ I GD+ ++L+ + G +I LT KE+ +++L N TK + Sbjct: 133 HKNDEVISRIQKGDIILDLNNYCIYKNGEKIDLTAKEFGLLKLFFTNPNRVFTKMQIFEN 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I V I +LR K+ + YI TVWG GY L + Sbjct: 193 VWHEEYRGDDNTIMVNIRRLRNKIEDDPNNPEYILTVWGIGYKLGD 238 >gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70] gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70] Length = 223 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+E K +DA++LDL L + G Sbjct: 1 MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R K PV IL+ +++++V GLQ GADDY+ KPF E++AR++A++RR Sbjct: 61 DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I + + + + V ++ + LT +EY+++EL L K+ L++ M LY+ Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR+KL K +I TV G GY L +N + Sbjct: 181 WDDEVSSNALEVHIYNLRQKLG-----KQFIRTVHGVGYALGKNDE 221 >gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L I LK E ++V GE+ + +D I++D+ + + G+ Sbjct: 1 MRVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R K STPV L+ +IED+V+GL GADDYI KPF+ +EL+ARIR ++RR+ Sbjct: 61 EVLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + DL ++ + V+ I L+ KE+ ++E + + L++E H+++ Sbjct: 121 GSVSNELRVADLVMDCATRIVKRGDKEIDLSAKEFAILEYMMQNQGVVLSREKLEEHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDV+I LR K+ I T+ G GYVL++ Sbjct: 181 YDYQGASNMIDVYIRYLRIKMDKDF-EPKLIHTIRGVGYVLKD 222 >gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F+V + G +E D ++LDL L + G +V Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLR-ATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDV 122 Query: 123 AQSLIVTG---------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + ++++ V V G + + KE+ ++E L LT+ Sbjct: 123 SAESQEEGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRGQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKFE 231 >gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08] gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07] gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08] gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++D+K + IE+ L + +NV + G++ +++ K ++LD+ + + Sbjct: 1 MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV R +R ++ P+ +LS S DK++G+ +GADDY++KPFN EL R+++++RR Sbjct: 61 GIEVCRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119 Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +I G + ++ + +V V G+ I LT +E+ ++ LL+ K + E Sbjct: 120 AYYFSGANNEDKDVIEVGAVIIDKEKHSVTVAGNDIILTSREFDILYLLANNKGRVYSTE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + ++R K+ G+ I TVWG GY + + Sbjct: 180 EIFEKVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230 >gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++LA + +L+ E F+ + G + E D ++LDL L + G + Sbjct: 3 RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKELR-SVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ G + +++D+ TV V G + + KE+ ++E L LT+ Sbjct: 122 TETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 QLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A IEL L++E + V G G+ + + +ILDL L + G EV Sbjct: 6 VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 66 ARRIR-KTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ G Sbjct: 125 ITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVWPG- 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 184 YQGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 224 >gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 223 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + LK E F V++ + G+ GI +CK + D +ILD+ + + G E Sbjct: 3 KILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDGIE 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V +R K + +C L+ + ++ GL +GADDYISKP L++R+ A++RR Sbjct: 63 VCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRRK 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 T DL +N + V G +HL KE++++ LL+ R +++ L ++ Sbjct: 123 ESVQAKPTGTPDLVINREKYLVIKNGETLHLPKKEFELLSLLASRPEVVFERDLILERVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IDV + KLR+K+ + YI+TV G GY R Sbjct: 183 GTDIIVGDRTIDVHVRKLREKIGDD-----YIQTVKGIGYKFR 220 >gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603] gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR + Sbjct: 69 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V ++G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|88808922|ref|ZP_01124431.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88786864|gb|EAR18022.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 242 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 ++L++EDD ++ ++E L++E F V G + + L + D ++LDL L + Sbjct: 13 KLLVVEDDDSIRETVEEALRAEGFEVRACGDGAEAMNLLTATDSMGVDLLVLDLMLPGLG 72 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R LR +TPV ++S S D+V GL+ GADDY+ KPF ELVAR RA++RR Sbjct: 73 GLDLCRQLRKLNNNTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 132 Query: 119 SRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S+ + +I +G+L + + V G + L+ KEY+++ELL +++ Sbjct: 133 SQQSESVSNQDRQVIQSGNLCLFVRECRVTRDGEDLTLSPKEYKILELLIQNPKRVWSRD 192 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+K+ +I TV G GY Sbjct: 193 QLLERIWGIDFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 241 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F V+ + G ++L + E D ++LD+ L D+ GF Sbjct: 7 RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGFT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV L+ +DK+ GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 67 VTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHP 126 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL ++ D+ V G + L+ E++++ L L L+K L+H++ Sbjct: 127 TPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-----GGKNYIETVWGRGYVLRENAK 226 + I++ +I LR+K+ NA + I T G GY+LR+ K Sbjct: 187 QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLLRQPPK 238 >gi|296130171|ref|YP_003637421.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296021986|gb|ADG75222.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 227 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA I ++L+SE F+ + G++ + + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMIGIVLRSEGFDPVFCEDGDEALGVFRATQPDLVLLDLMLPGKDGNE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYISKPF +ELVAR+RA +RRS Sbjct: 64 VCRQIRGESGV-PIVMLTAKSDTIDVVLGLESGADDYISKPFKPKELVARVRARLRRSDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL++++ VE G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEHLTIGDLTIDVPGHRVERAGRTISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIETDPARPEIVVTVRGVGYK 221 >gi|229100335|ref|ZP_04231208.1| Response regulator [Bacillus cereus Rock3-29] gi|228683091|gb|EEL37096.1| Response regulator [Bacillus cereus Rock3-29] Length = 240 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K + + +E +LK E F +Y G++GI +CK + D IILD+ L D+ G+ Sbjct: 12 KILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGKEGIHMCKQVQPDLIILDIMLPDLDGY 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R P+ LS + DK+ GL G DDYI+KPF+ +E+ +++A RR++ Sbjct: 72 SVCQQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GD++++ TV + LT KE+ ++ L N +K + Sbjct: 131 YQEKARIVYQFGDITIDEAQGTVLRGDTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+ V + LR+K+ + +Y+ TV G GY L Sbjct: 191 WGDTYLGNDNIMMVHMRHLREKIEDNPSKPHYLVTVRGLGYKL 233 >gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + I L ++ E F V G IE K + + ++LD+ L G++ Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIMLPGADGWQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS DKV GL+ GADDYI KPF +ELVAR++A++RR Sbjct: 66 VCREIR-QVSNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRRYEH 124 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L +N T++V G + + KE +++ L+ N T++ L ++ Sbjct: 125 KEIDVKEVVYPNLVINKSNYTLKVNGTDMEVPPKELELLYFLASNPNKVFTRDQLLEQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+K+ + ++TVWG GY Sbjct: 185 GFDFYGDSRTVDVHIKRLREKIESEDQNWQ-VKTVWGVGYKFE 226 >gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++ P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+IEDD + I+L + ++ GE+G+EL D IILD+ L + G+ Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R+ P+ +L+G D ++GL GADDYI KPF+ EL+AR++ ++RR+ Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ +++ V + + + KE ++ L++ LT++ L+ + Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + +DV I ++R KL+ K I T+ G GY EN+ Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEH-KAKWSIVTIRGVGYRFEENS 230 >gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332] Length = 229 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL++DD + + L+ F+V G + + + D ++LDL L ++ GF+VL Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 +R + PV +L+ + ED++ GL GADDY+ KPF+ ELV+R+RA++RR+ Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 QSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L V++ + V+ ++LT +E+ ++ L+ ++E L+ ++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + +DV + +LR+KL + Y+ETVWG+GY A+ Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKAR 227 >gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 229 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED++ALA ++ L E + V V G +G+ + D IILD L + G E+ Sbjct: 10 ILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLSGIEI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ + D+V GL SGA+DYI KPF+ EE +AR+R +R + Sbjct: 70 CRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQEP 129 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+ DLS++ + V I LT KEY ++E L LT+ L ++ Sbjct: 130 NADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWGYD 189 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL + G I+TV GYVLRE Sbjct: 190 FMGDSNIIEVYVRYLRIKLESE-GESRLIQTVRSVGYVLRE 229 >gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum JL354] Length = 225 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHYLGSTEDYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + GD+ ++ + V G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGDVRLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGA-----EVITTIRGLGYSLDDPA 220 >gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC BAA-895] gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 6 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 66 DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL+++L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + IDV + +LR K+ + I+TV G GYVL D Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKI-DNEFEPKLIQTVRGVGYVLEVPDGD 232 >gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 231 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++++ + L+ + V + G+ + + + +D +LD+ + + G+E+ Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV LS S DKV GL+ GADDY++KPF EL+AR+RA++RR + Sbjct: 68 CRNLRTRTNA-PVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMD 126 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+ + I G ++++ E I LT +E++++ L ++E L Sbjct: 127 AEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREA 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E K +D I +LR KL+ A IETV G GY R Sbjct: 187 WGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFR 230 >gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273] Length = 218 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ + + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G + LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676] gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676] Length = 233 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 69 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S+ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA + L + V G D L +DA+ILDLGL + G Sbjct: 1 MRILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A+++ PV IL+ S +KV G+ +GADDY+SKPF EEL+ARIRA++RR+ Sbjct: 61 SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G + +N A TV V G + LT E+++++ L ++K H+Y Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ +LR+KL IETV G+GY LR + Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----IIETVRGQGYRLRPPPE 221 >gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 224 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 113/223 (50%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+ E F + G++ + + D ++LD+ + + G+ + Sbjct: 4 ILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIMMPTMDGWTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R++A+++R R Sbjct: 64 CKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G ++++ + I L KE++++ L+ T+E ++ ++ Sbjct: 124 YSQTIQLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + IDV I +LR++ + A +IET+ G GY L + Sbjct: 184 YAGDNRTIDVHIKRLRERFALIAD--FHIETIRGLGYRLEVDE 224 >gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 241 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 19 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 78 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 198 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 239 >gi|33865481|ref|NP_897040.1| two-component response regulator, phosphate [Synechococcus sp. WH 8102] gi|33632650|emb|CAE07462.1| two-component response regulator, phosphate [Synechococcus sp. WH 8102] Length = 235 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD---AIILDLGLTDIP 58 R+L++EDD ++ ++ +L++E ++V G + + L ++LDL L + Sbjct: 9 RLLVVEDDDSIRETVGEVLRAEGYDVLTCGDGAEALNLFTSEPAQQVDLLVLDLMLPGLG 68 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R LR +TP+ ++S S D+V GL+ GADDY+ KPF ELVAR RA++RR Sbjct: 69 GLDLCRELRRINNNTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 128 Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + +L + ++ V G+ ++L+ KEY+++EL +++ L Sbjct: 129 AQQDPSVLPEIYSHANLCLYVNECRVTRDGNDLNLSPKEYKILELFLQHPKRVWSRDQLL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV I LR+K+ I TV G GY Sbjct: 189 EKIWGIDFVGDTKTVDVHIRWLREKIEEQPSSPELIRTVRGFGYRF 234 >gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 256 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ + + L+ E + VY G +G +L ++ D IILDL + G+E Sbjct: 23 RVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKDGWE 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 83 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQ 141 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I DL + + V V +++ LT KE++++ L++ ++ Sbjct: 142 VPIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E I+ V + +LR KL +I TVWG GY N ET Sbjct: 202 LELIWDTEHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPNGGSET 256 >gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 224 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K L I+ +L E + V V+ G G+E +D IILD+ L +I G+ Sbjct: 3 KILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEINGYN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R KI TPV ++S I+D+++GL SGADDY+SKPF+ EL+AR++AI+RR+ Sbjct: 63 ILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTFS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I +L ++L+ + V + + LT KEY +IE L +N ++K + +++ Sbjct: 123 QYEQIISIYNLKIDLNTRKVYINDSEVQLTSKEYGIIEYLVSNRNKVVSKFAIIEYVWGD 182 Query: 182 RDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P +DV I +RKK+ + I+TV G GY+L+ Sbjct: 183 EFDPFSMSNFLDVHIKNIRKKIGD--KEYKIIQTVRGIGYLLK 223 >gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325] gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325] Length = 223 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G G+E +DA++LDL L + G Sbjct: 1 MRILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R K PV IL+ +++++V GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 EILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I + + + + V +Q + LT +EY+++EL L K+ L + + LY Sbjct: 121 GQSNPIIEHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR+KL +I TV G GY L +N + Sbjct: 181 WDDEVSSNALEVHIYNLRQKLGKH-----FIRTVHGVGYTLGKNDE 221 >gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 231 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 233 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 3/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD AL + L+ E + V G++ + E+D I+LD+ L G E Sbjct: 4 RILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR K TPV +L+ D+V GL+ GADDY++KPF+ EL+ARI+ I+RR Sbjct: 64 ICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRRRNL 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G + + + V ++G ++ LT KE++++ LL K L ++ L L Sbjct: 124 DLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNKGRVLKRDYLLQRL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D D + +++DV + KLR+KL++ IETV G GY E +E Sbjct: 184 WDYGDTVKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFEEKGYEE 233 >gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 228 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D+ + + L+ E F + G + +E+ + ++ D ++LD L ++ G +V Sbjct: 5 LLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWMLPEMSGLDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S + +++ + DK+ GL+ GADDYI+KPF+ EL ARIR+++RR++G Sbjct: 65 CRELR-RMGSVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRTQGG 123 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GDL+++ V I LT E++++ L+ R T ++ L Sbjct: 124 GDEPSVLRRGDLTIDETKFRVWKGDQEIVLTPTEFKILVTLASRPGTVYSRLQLLQSALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D + LRKK+ + YI+TV+G GY E Sbjct: 184 ETYLNYERTVDTHVSHLRKKIEDDPAEPRYIQTVYGVGYRFGE 226 >gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] Length = 233 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 60/232 (25%), Positives = 104/232 (44%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D+ + + ++L E + V G + ++L D I+LD+ + ++ G++ Sbjct: 4 RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNGYQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR + P+ L+ DK G SGADDY++KPF+ EL AR++A++RR + Sbjct: 63 TCLKLR-ETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + L++ + EV G + LT E+ ++ L + Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 172 EMFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ I V I LRKK+ YI+T+WG+GY Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16] gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 232 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD +A + L + + +V V + G G+E +D +ILDL L G E+ Sbjct: 5 VLVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLMLPGADGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR TP+ +L+ S+ D+V GL+ GADDY++KPF+ EL AR++AI R Sbjct: 65 CRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDTL 124 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L +++D + V V+G I LT KE+Q++ + ++ L+ Sbjct: 125 ANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + I +LR K+ YI+TVWG GY Sbjct: 185 QVWGYSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGYKF 229 >gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676] Length = 231 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231 >gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 241 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 125/236 (52%), Gaps = 9/236 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD + + I L S ++ V + GEDG++ K D +ILDL L DI G Sbjct: 1 MKNILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPDIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R++R + STP+ ILS + D++ GL+ GADDYI+KPF+ EL R+ RR Sbjct: 61 MEICRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 RGHAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G ++ + V + + I+++ KE+ +++LL+ ++ Sbjct: 121 DKKIGIKPNVGQAGEIIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 EM L ++ + ++ID I ++R KL + +IET+WG GY +N ++ Sbjct: 181 EMILESVWGVEWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDNFEN 236 >gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 229 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185] gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550] gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185] gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A ++L L+ E ++V + G +G++ + ++LD+ L + G E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR LR TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIRA +R++ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + DL VN + V + LT +E+ ++ + LT+E L+ + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I +RKKL + K I T+ G GY ++ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227 >gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22] gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces scabiei 87.22] Length = 241 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 19 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 79 VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ +N Sbjct: 199 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241 >gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I LKS ++ G + ++ K + D I+LD+ + + G + Sbjct: 9 KILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKAKVFRPDLIMLDIMMPNKNGID 68 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R T V L+ ++ + ++ GL GADDYI+KP + LV+RI A+ RR Sbjct: 69 TCREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRRL 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++ + TV +G I L KE+++++LL+ + + LN ++ Sbjct: 129 HKPEDTQVQLGDLIIDREKFTVTYKGQEIILAKKEFELLQLLASKPGRVFLRNEILNQVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IDV I K+R+K+ I TV G GY Sbjct: 189 GTEVIVGDRTIDVHIRKIRQKIGID-----LITTVKGVGYKFE 226 >gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] Length = 231 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ L+ + L++E +NV V G++ L + + D ++LD L + G E Sbjct: 3 KILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLPGLSGIE 62 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R R P+ +L+ +++RGL +GADDY+ KPF+ EL+AR+RAI RR+ Sbjct: 63 LCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRRA 122 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +GD+ ++ + V G IHL E++++E L ++E L+ + Sbjct: 123 LPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLDGV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK ++ K+ I TV G GY + Sbjct: 183 WGHDVYVDERTVDVHVGRLRKAINK-GRMKDPIRTVRGAGYAFNDQ 227 >gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea] gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea] Length = 243 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ + + + ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+ Sbjct: 67 VCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I G L ++ + + V R+ LTG E+ ++ELL + ++ Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++DV I +LR KL + + I T G GY+ + Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 243 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I + ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGGNGIPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234 >gi|319405236|emb|CBI78841.1| cell cycle transcriptional regulator CtrA [Bartonella sp. AR 15-3] Length = 233 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 165/227 (72%), Positives = 194/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+ KI TPV ILSGM I+DKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLEKIKTPVLILSGMGDIKDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL++NLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIITTGDLTINLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ K+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPIKE 227 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD A++ + L+ E ++V V + G + +E K D ++LDLGL + G E Sbjct: 3 RVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN-PDLVLLDLGLPKVDGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S PV IL+ + D V GL +GADDY++KPF EL+AR+RA++RR+ Sbjct: 62 VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRTPT 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ D + +G + LT KE+ ++ +L + + +E + ++D Sbjct: 122 DVGPTGEL--VRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWDT 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 K +D+ I LR+KL + A YI TV G G+ D Sbjct: 180 AWFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFERPKPD 225 >gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V V G + +E K D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + + V G I LT +E+ + +L ++ L Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|103486056|ref|YP_615617.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976133|gb|ABF52284.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 235 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 156/236 (66%), Positives = 190/236 (80%), Gaps = 1/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +I+ ML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIDTMLTTEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG+S ++ KVR GADDY++KPF+++ELVARI A+VRRS+ Sbjct: 61 DVLKKLRTAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHRDELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD KTVEV R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIKTGKLAVNLDTKTVEVDSIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR + DE E A Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLR-DIDDEGNEVRRVA 235 >gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 263 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 118/227 (51%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ A + + V V GE+G+ L + +D +++D L G Sbjct: 38 MRLLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRMLPRRDGL 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TP ILS + ++D+V GL++G DDY+ KP+ EL+AR+ A R Sbjct: 98 ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ DL ++ A G I L +E++++E L +T+ M L +++ Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV + +LR K+ + + TV G GY++R+ + Sbjct: 218 DYHFDPQTNVIDVHVSRLRSKI-DKGFDPPLLHTVRGAGYIIRDGVR 263 >gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] Length = 242 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ EL+AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] Length = 231 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A L++ F V + G +G+ L + E+ ++LD+ L I GFE Sbjct: 3 KILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + PV +++ DK+RGL GADDY+ KPF+ ELVAR RA ++ Sbjct: 63 ICREVR-KSKNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ I L + ++ V V G + L +EY+++ L+ + ++E Sbjct: 122 LSSGASSGAERPIEVKGLKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRETL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V + ++R K+ YIETVWG GY + Sbjct: 182 FERIWGEDHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGYRFTAD 231 >gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1] gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1] Length = 253 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G +E+ + + D ++LDL L G E Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 93 VCRQIRGESDV-PIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+++++ V G RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 152 KAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 211 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 212 RHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >gi|228998532|ref|ZP_04158120.1| Response regulator [Bacillus mycoides Rock3-17] gi|229006008|ref|ZP_04163698.1| Response regulator [Bacillus mycoides Rock1-4] gi|228755276|gb|EEM04631.1| Response regulator [Bacillus mycoides Rock1-4] gi|228761257|gb|EEM10215.1| Response regulator [Bacillus mycoides Rock3-17] Length = 240 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K + + +E +LK E F +Y G +GI +CK + D IILD+ L D+ G+ Sbjct: 12 KILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIILDIMLPDLDGY 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R P+ LS + DK+ GL G DDYI+KPF+ +E+ +++A RR++ Sbjct: 72 SVCQQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GD+ ++ TV + LT KE+ ++ L N +K + Sbjct: 131 YQEKARIMYQFGDIRIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+ V + LR+K+ + +Y+ TV G GY L Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKL 233 >gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F G + + D ++LDL L + G + Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLPGLDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ S D V+GL+SGADDYI KPFN +ELVARIR +R + Sbjct: 64 VCDLIRAESGV-PIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ GDL V+++ V RI+LT E+ ++ L+ R T+EM L ++ Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ++++V + +LR K+ + + TV G GY Sbjct: 183 QYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221 >gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 218 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL G NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGE---GGNYIQTVWGVGYKFE 217 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + ++ L+SE + V G + + AI+LDL + + G Sbjct: 1 MRVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +L+ ++ D++ GL +GADDY+ KPF+ +EL+AR+RA++RRS Sbjct: 61 TMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL+V+ A V + L+ EY ++E+L + + + + ++ Sbjct: 121 PGDDTVLRCADLAVDTGAHRVRRGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 P ++V++ LR+KL A G + TV G GY L E+ Sbjct: 181 QDFGPSSNSLEVYVRYLRRKLE-AGGEPRLVHTVRGVGYRLDES 223 >gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 229 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +E L E + V G+ +E + ++ I+LD+ + + G E Sbjct: 8 KVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDGVE 67 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R LR ++ + L+ S +V ++GADDYI+KP L++RI A RR Sbjct: 68 TCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFRRD 127 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I G L+++ + TV V G ++ L KE++++ L+ N ++ L + Sbjct: 128 VKKQKDNNKITIGGLTIDRTSYTVSVDGKQVSLPKKEFELLYFLAQNPNKVFNRDDLLQN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +DV + K+R+K+ + YI TV G GY Sbjct: 188 IWGSDVYVLARTVDVHVRKVREKVGD-----GYISTVKGVGYKF 226 >gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + I L E + V + GE +++ C + D II+D+ + + G+ Sbjct: 4 KILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKMDGW 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ +L+ S +D+++G + G D+YISKPF+ + L AR+ A++RR+ Sbjct: 64 QLCKEVR-KLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ ++VN A TV + G I L+ KE++++ + L++E LN++++ Sbjct: 123 GDNEEILDIAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ +I T+WG GY Sbjct: 183 YDYYGDARTIDTHVKKLRSKMGEKG---KFISTIWGMGYKFE 221 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ ++V G + + L + D +ILD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + I P+ L+ + DKV GLQ+G DDY++KPF EE+VARI AI+RR++ Sbjct: 71 VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKR 130 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A DL ++ + V G I L+ E++++ L + + ++K L+H++ Sbjct: 131 SAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG----KNYIETVWGRGYVLRENAK 226 + E + I++ +I LR+KL + I+T G GY+LR+ + Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLLRDPNE 241 >gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99] gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99] Length = 228 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E+ + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR + Sbjct: 64 ACMKIR-EDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + GDL+VN D V V+G LT KE+ ++ELL+ K + L+ Sbjct: 123 YNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I K+R K+ + YI+TVWG GY + Sbjct: 183 ETVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|319408928|emb|CBI82585.1| cell cycle transcriptional regulator CtrA [Bartonella schoenbuchensis R1] Length = 233 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 166/227 (73%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK + SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTSQSIELMLKSGNFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGMSSIEDKVRG GADDY++KPF+KEEL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMSSIEDKVRGFGFGADDYMTKPFHKEELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLD KTVE+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDNKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ +++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPSEE 227 >gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 247 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 7/237 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD ++ + L + + V G + D I+LD+ L D GF + Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TPV L+ + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+ Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + V L + V G + L+ E++++ L K L Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 ++ + +I+D ++ LR+KL + G + TV G GY LR +DE Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLRLP-RDEPGAGTR 247 >gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LDLGL + G Sbjct: 1 MRLLVVEDDADLNRQLTEALTEAGYVVDRAFDGEEGHFLGDTEPYDAVVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ Sbjct: 61 SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I G + ++L A V V GH I LT EY+++ L K +++ HLYD Sbjct: 121 GHASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++VF+ +LRKKL IET+ G GY + + +D Sbjct: 181 QDFDRDSNTVEVFVGRLRKKLGGEP-----IETIRGLGYRMGDPVED 222 >gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 218 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916] Length = 280 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE +E+ D ++LD+ L + GF V Sbjct: 37 ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDGFAV 96 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI +I+R Sbjct: 97 CRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGRG 155 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q ++ GDL V+ + + V RI LT E+ ++ELL + + Sbjct: 156 SATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVPR 215 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 216 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL++ED+ + + L + V V G +G+ + + D I+LD+ + + G Sbjct: 1 MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 E LR R TPV L+ + DKV GL+ GADDY++KPF+ EL+ARIRA + R Sbjct: 61 LEFLRKYRAD-AGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRA 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L ++ ++T V+G R+ LT E+++++L T+ L HL Sbjct: 120 GEKPTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +DV + +R K+ G IETV+G GY L Sbjct: 180 -QEDSVGSERTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRLNP 223 >gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L + + V+ GE+ +E + D I+LDLGL I G E Sbjct: 7 RILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLPGISGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + P+ +LS + DKV+ L GADDY+SKPF E++AR+R +R S Sbjct: 67 VCRKVR-EQSNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G L V+ + V+V+G + LT EY +++ L +T++M L+ + Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + E + V+I +LR+K+ +I T+ G GY + Sbjct: 186 WGTGYGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGYRFNSEEPE 234 >gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 20/242 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ +A + L E + V G++ ++D IILDL L + G E Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 V R +R PV +L+ S +K+ GL+ GADDY++KPF+ EL+AR++A +R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 118 ----------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 R ++ + G LS+ + ++ + LT KE++++ ++ Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LT+E L ++ + + +DV I LR+K+S A G + +ETV G GY L Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 222 RE 223 +E Sbjct: 243 KE 244 >gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] Length = 229 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E K++DV + +LR+K+ +I TVWG+GYV +E+ Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227 >gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19] gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19] Length = 226 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L+ ++ L + V GE+ L +D IILDLGL I G Sbjct: 1 MRILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA+VRR+ Sbjct: 61 SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ L+V G L ++ A V G + LT EY+++ L + +N +++ + HLYD Sbjct: 121 GHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKK+ N IETV G GY L+ Sbjct: 181 QDFDRDSNTIEVFMGRLRKKIGND-----RIETVRGLGYRLKP 218 >gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325] gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325] Length = 233 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ E ++V V + GE ++L + D I+LDL L + G E Sbjct: 5 KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVRAQKNI-PIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S +V D+ + +A ++ G + LT +E+ + L+ + LT+E Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + YI T G GY + E Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGEE 233 >gi|302035689|ref|YP_003796011.1| heavy metal response regulator [Candidatus Nitrospira defluvii] gi|300603753|emb|CBK40085.1| Heavy metal response regulator [Candidatus Nitrospira defluvii] Length = 223 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + I+ L+ E++ V + + G G+++ +D I++DL L +PG Sbjct: 1 MRVLVVEDETKVGSFIKRALEEESYAVDLCEDGAQGLDMALSGSYDLIMIDLMLPSLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR KI TPV IL+ S ++ +V+GL +GADDY++KPF +EL+AR+RA++RR Sbjct: 61 EVLTRLRKEKIQTPVLILTAQSKVDQRVKGLDAGADDYLTKPFAIDELLARVRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +N + V G RI LT KEY ++E LT+ M +H+++ Sbjct: 121 AESSGTLQIDDLLLNPATREVTRGGQRIDLTVKEYALLEYFMRHAGRVLTRPMISDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +IDV++ LR K+ + + I T+ G GY+L+ + Sbjct: 181 QDFDTFTNVIDVYVNYLRNKI-DRGRARKLIHTIRGSGYMLKVD 223 >gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 269 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 17/240 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +E+ D ++LD+ L + GF V Sbjct: 26 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 86 CRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ G+L V+ + + V RI LT E+ ++ELL + + Sbjct: 145 SANAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 204 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226 L L+ R +++++DV++ +LR KL I TV G GY + +NA Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRMGDNAP 264 >gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM 12614] gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM 12614] Length = 237 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L+ + V GEDG L +DA++LDLGL + G Sbjct: 16 MRILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGLPSLDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ Sbjct: 76 SVLENWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++L + V V G + LT EY+++ L + +++ HLYD Sbjct: 136 GHASNELTCGAVRLDLRSGRVTVDGSAVKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++VF+ +LRKK+ + IET+ G GY L Sbjct: 196 QDFDRDSNTVEVFVGRLRKKIGSD-----MIETIRGLGYRL 231 >gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I + L+ E + V + G ++L + + IILD L I G +V Sbjct: 5 ILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWMLPSIDGLDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ S+ +DK+ GL GADDY++KPF+ ELVAR+R ++RR+ Sbjct: 65 CRILRAECDI-PIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRELVARVRVVLRRASQQ 123 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GDL V+ DA + + LT KE++++E L+ ++ + + Sbjct: 124 KEDDRLPALRLGDLVVDFDAHEARLHNTVVRLTPKEFKLLETLAREPGRAFSRAELVTRV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E + IDV + LRKK+ Y+ TV+G GY LR+ + E Sbjct: 184 FGIDYEGFDRTIDVHLMNLRKKIEPFPDQPIYLHTVYGVGYKLRKEKEYE 233 >gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L F V G DG+ L +D I+LD L G+ Sbjct: 18 MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + + PV +L+ + D+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 78 SVLSELRARQTT-PVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ + E G R+ LT KE+ ++ LLS R L++ + ++D Sbjct: 137 TRMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV I +LR KL + TV G GYVL Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVLE 237 >gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541] gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541] Length = 219 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + +++ L F + G+ G + +DA+ILDL L +I G Sbjct: 1 MRILLVEDDRLIGDGLKVGLTQLGFTMDWFMDGKQGQQALFDAPYDAVILDLSLPNIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILKYWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ GD+ ++ A TV QG + L GKE ++ L L++ + LY+ Sbjct: 121 GQLSPTLIHGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V I LR+KL +I+TV G GY L + Sbjct: 181 WDEEVSSNSVEVHIHHLRRKLGA-----KFIQTVHGVGYRLGD 218 >gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] Length = 230 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A +E L E + + + GE+ + + + D I+LD L + G E Sbjct: 5 RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R LR+ + P+ +L+ + D+VRGL +GADDY+ KPF+ EL +RI+A+ R Sbjct: 65 VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRA 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GD+ ++ A V +HL E+++++ L ++E LN + Sbjct: 125 RPSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +LRK L NA G +N I TV GY L Sbjct: 185 WGSDVFVEARTVDVHIGRLRKAL-NAHGHQNPIRTVRSAGYALE 227 >gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE+ + ++ D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREIRRENNT-PIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYTA 124 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I DL +NL +V G + + KE +++ L+ N T+E Sbjct: 125 TQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV I +LR+K+ + K I TVWG GY Sbjct: 185 QLLDHIWGYEYVGDTRTVDVHIKRLREKIHDH--EKWSIGTVWGVGYKFE 232 >gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032] gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032] Length = 227 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+IED++++ E+ + E F G+DG+ K + +D +ILD+ L + G Sbjct: 1 MKILMIEDNQSVCTMTEMFFQREGFQAEFVHDGQDGLNRFKQEDDWDLLILDIMLPSMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R P+ +L+ + D+V G GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 LTICQKVR-QISDVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARIKAVKRRF 119 Query: 120 RGHAQSLIVTG----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + V + G I LT KEY ++ ++E Sbjct: 120 TQTTIQKEDERLATAHFLLDKKTREVFLDGEPIENLTPKEYDLLCFFIQHPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LR+K+ + Y TVWG GY E+ Sbjct: 180 LEQIWGYQFYGDERTVDVHIKRLRQKIGDGPKPFLY--TVWGVGYKFDED 227 >gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24] gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans TK24] gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ +N Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225 >gi|332705560|ref|ZP_08425638.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332355920|gb|EGJ35382.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 111/227 (48%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + I L +NF + G+ + + + D +ILD+ L D G+ Sbjct: 5 KILVVDDDPAIRNLILRFLSQKNFQMQAAQDGKTALATFEQFNPDLVILDVNLPDALGYN 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ V +L+ S DK +G Q GADDYI+KPF+ +EL R+RA R Sbjct: 65 LCQQMQSRTDVF-VLLLTSRSDAADKNQGFQQGADDYITKPFDLQELENRVRAILKRKRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V L ++ + V + I LT E+ ++ L+ L + + + Sbjct: 124 VTATEAERLVFDHLVIDPGRREVTIDEILIPLTALEFDLLHFLACHPGRVLRRSELIQEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + +++DV I ++R+K+ + + I+TV G GY + Sbjct: 184 WEYDYVGDQRVVDVHIGQIRRKIEVNSSDPSLIQTVRGVGYKFEAPS 230 >gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A ++ L+ ++ G+ G+++ + + D ++LDL L + GF Sbjct: 4 KILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMVDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ D + GL+ GADDYI+KPF+ ++VARI+A++RR G Sbjct: 64 VCRTLRAESSV-PIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRVNG 122 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + ++L +TV ++ + I LT E+ ++ L LT+ L+ + Sbjct: 123 ELEPPMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDAV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D I +R+K+ YI TV+G GY E Sbjct: 183 QGEEGEAYDRTVDAHIKNVRRKIEPNPSVPRYILTVFGVGYKFAE 227 >gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 239 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238 >gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 120/223 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 63 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L ++ L E++ G D ++ ++D IILD+ L + G Sbjct: 1 MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R TPV L+ IED+V+GL GADDY+ KPF+ EEL+AR+R ++RR Sbjct: 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ ++K V +I L+ KE+ ++E + +N L++E H ++ Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV+I LRKK+ G I TV G GYVLR+ Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGC-KLIHTVRGVGYVLRKEE 224 >gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium resistens DSM 45100] Length = 230 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +LK E F V++ G ++ + D ++LDL L + G EV Sbjct: 4 VLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CRQLR-QTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGET 122 Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + ++++ V V G + + KE+ ++E L LT+ + Sbjct: 123 EHVEEADEGQILREDRVMMDVERHIVTVDGEPVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + K +DV I +LR K+ + TV G GY Sbjct: 183 DRVWGVDYVGDTKTLDVHIKRLRSKIERHPSRPQLLLTVRGLGYKFE 229 >gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201] gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201] Length = 242 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 120 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A + L L +E + V+ D +E K D +LD+ + +I GFE Sbjct: 4 KILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPEISGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ DK++GL GADDYI+KPFN ELVAR++A +RR + Sbjct: 64 ICKIIR-EKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S + + D+ + ++LT E+ ++ L K +T E Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR+K+ +I+TVWG GY + E Sbjct: 183 AVWKEKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229 >gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241] gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293] gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241] gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293] gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|228994834|ref|ZP_04154632.1| Response regulator [Bacillus pseudomycoides DSM 12442] gi|228764942|gb|EEM13698.1| Response regulator [Bacillus pseudomycoides DSM 12442] Length = 240 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K + + +E +LK E F +Y G +GI +CK + D I+LD+ L D+ G+ Sbjct: 12 KILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIMLDIMLPDLDGY 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R P+ LS + DK+ GL G DDYI+KPF+ +E+ +I+A RR++ Sbjct: 72 SVCQQIR-QFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKIKAFFRRNQ 130 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GD++++ TV + LT KE+ ++ L N +K + Sbjct: 131 YQEKARIMYQFGDITIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+ V + LR+K+ + +Y+ TV G GY L Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKL 233 >gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293] gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293] Length = 242 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ EL+AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F G + + D ++LDL L + G + Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLMLPGLDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ S D V+GL+SGADDYI KPFN +ELVARIR +R + Sbjct: 64 VCDLIRAESGI-PIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ GDL V+++ V RI+LT E+ ++ L+ R T+EM L ++ Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ++++V + +LR K+ + + TV G GY Sbjct: 183 QYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221 >gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + LK F V V G DG+ L + +DA ++D+ L + G Sbjct: 1 MRILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR KI+TPV ILS S++D+VRGLQ+G DDY++KPF+ EL+ARI A I R + Sbjct: 61 TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R S + G+L+++L + V+ G I L +E+ ++E L K ++K L H+Y Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ ++DV +C++R K+ + I TV G GYVL+E Sbjct: 181 DYSFDPQTNVVDVLVCRVRNKVDKDF-DRKLIHTVRGMGYVLKEQ 224 >gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 228 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A ++L L+ E +NV + G +G+ + ++LD+ L + G E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR LR TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIR +R++ Sbjct: 65 VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNGT 124 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + DL VN + V + LT +E+ ++ + LT+E LN + Sbjct: 125 KTEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I +RKKL + K I TV G GY ++ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTVRGVGYAIK 227 >gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] Length = 232 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++A+A +E+ LKSEN+NV G+D ++ + + D ILD+ L DI GF Sbjct: 3 INILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR Sbjct: 63 DICQKIR-ENHHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVT 121 Query: 121 GHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q + G L V+ + + + LT E+ ++ +L + + E Sbjct: 122 KYNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEK 181 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I V I LR K++++A YI+TVWG GY + Sbjct: 182 LFEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGYKIE 231 >gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 5/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+++LA + L + + V G ++ + E D ++LDL L + G EV Sbjct: 5 VLVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR V +L+ + DK+ GL GADDY++KPF+ ELVAR+ A+ RR R Sbjct: 65 CRRLRTFSDCY-VIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAAMQRRPRQP 123 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L V++ A+ + G + LT E+ ++ +LS R N L++ + + Sbjct: 124 RGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEFDLLAVLSARPNVVLSRAELITAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I LR+KL +A +I TV G GY + + Sbjct: 184 WGEGWVGDEHLVDVHIGHLRRKLGDAPARPRFILTVRGIGYRMGPQS 230 >gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4] gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5] gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus 273-4] gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 254 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 7/241 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V G +L + F ++LDL L G Sbjct: 13 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGEDGIS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR P+ +L+ D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 73 ICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 132 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H ++ G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 133 ELPGAPSHQLEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 +N + IDV + +LR+ + + YI+TVWG GYV + + E Sbjct: 193 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEAEVEAAKSE 252 Query: 235 T 235 + Sbjct: 253 S 253 >gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] Length = 229 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L++E F V GE+ + + D ++LD L ++ G EV Sbjct: 8 VLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNVSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R + + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA R Sbjct: 68 CRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRAR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + D+ ++ + V G + L E++++ + ++E L+ ++ Sbjct: 128 PSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK LS G + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALSQHGGQ-DLLRTVRGAGYAL 228 >gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 242 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 124/241 (51%), Gaps = 16/241 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ +E + Y D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + I G+L + DA VE G +I LT +E++++ ++ + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +T+E L ++ +V+ +DV + +LR+K+ + + T G GY + + Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY-FVKQQTE 241 Query: 228 E 228 E Sbjct: 242 E 242 >gi|262201364|ref|YP_003272572.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084711|gb|ACY20679.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L + V G + +E D I+D+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLTFNGYAVDTAGDGIEALEKIVSDRPDVAIMDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ ++ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSAGDDLPILVLTARDTVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAV 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ DLS++ + V I LT E+ ++E+L L++ L Sbjct: 121 PDEEADSETLRFADLSLDPVTRDVSRGDRHISLTRTEFALLEMLMANPRRVLSRSRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEDRLIHTVRGVGYVLRE 225 >gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 244 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD +A + L+ F V G + L D ++LDL L + G EV Sbjct: 15 ILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLMLPGMDGLEV 74 Query: 63 LRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ +++RR G Sbjct: 75 CRRLRAGEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRGGG 134 Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + ++ A+ GH + LT +E+ ++ L + +E + Sbjct: 135 GAGERRAGPELAAAGIVLDPGARRATKDGHELALTLREFDLLAHLMRHPGEAIGRERLMQ 194 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + V + +LR K+ + I+TVWG GY + Sbjct: 195 DVWGWEF-GDLSTVTVHVRRLRGKIEDDPARPRLIQTVWGVGYRFDSPEE 243 >gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1] gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1] Length = 255 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +L+ + + L+ E V G + + + D ++LD+ L D+ G Sbjct: 28 RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS Sbjct: 88 VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL ++ D+ V G +HLT E++++ L L+K L+ Sbjct: 148 AQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++++I LR+KL G I T G GY+++ Sbjct: 208 VWSYDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLIKP 253 >gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 228 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CRIIRQSSDVHIFML-TAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L ++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165] gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165] Length = 238 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ + + ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFNRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225 L ++ +++ ID + +LR+KL + + I TVWG GY Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPE 237 >gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis] gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein Length = 243 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L + V GE+ + + + ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+ Sbjct: 67 VCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I G L ++ + + V R+ LTG E+ ++ELL + ++ Sbjct: 126 ITTSLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++DV I +LR KL + + I T G GY+ + Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + + L+ E + V G G+ D ++LD+ L ++ GFEV Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR TPV +LS DK+ GL GADDY+ KPF +EL+ARI+A++RR Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GD+SV++ A+TV + LT +E++++ T T+E L+ Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +D F+ +LR K + TV G GY Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 227 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+K + + L+ E F V + G + +++ + + D I+LDL L + G+EV Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 ++ +R K +TP+ +L+ DK+ GL+ GADDYI+KPF+ EL RI+A+ R Sbjct: 65 MKKIR-QKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + +LS+N + + + LT E++++ LL+ ++ L ++ Sbjct: 124 EQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + ID I LR K+ + I+TV+G GY L Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAEE 227 >gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 118/226 (52%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +DD + ++ L+SE + V+ G++ + ++D+ + ++ G+ Sbjct: 2 IHILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVMMPNMDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R PV +L+ + DK +G G DDY++KPF +EL+ RI+A++RR + Sbjct: 62 QLCEEIR-RYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I + +++ + V+ G + L KE++++ L+ + T ++E + ++ Sbjct: 121 MVNADKIHLNETTIDRKSYEVQGHGKMLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + + +DV I +LR++ ++ +G I T+ G GY L + + Sbjct: 181 TDFEGDDRTVDVHIKRLRERFADRSGDFQ-IRTIRGVGYKLEASPQ 225 >gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD ++ +++ L LK + V GEDG+E + D ++LDL L I GFE Sbjct: 3 RVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A ++ V + S D V GL++GADDY+ KP + L ARIRA++RR+ G Sbjct: 63 VCRRIRAASSTSIVML-SARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L V+ + TV G +I L E +++ LS +++ L +++ Sbjct: 122 VPSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVWEH 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++D + +LR K+ + Y++TV G GY Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGYRFGP 223 >gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630] gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196] gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291] gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196] gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291] Length = 230 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + IE+ L + +NV + G++ +++ K +ILD+ + + G EV Sbjct: 5 VLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++ P+ +LS S DK++G+ +GADDY++KPFN EL R+++++RR+ Sbjct: 65 CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G + ++ + +V V G+ I LT +E+ ++ LL+ K + E Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + ++R K+ G+ I TVWG GY + + Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] Length = 231 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 9/231 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+DDK + + + L++E + +Y G++ + + ++ D +ILD+ + Sbjct: 2 MKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKRN 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RR Sbjct: 62 GLEVCQQVREENTV-PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRR 120 Query: 119 SRGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S + + + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 121 SSFQQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR+KL G+ I TVWG GY + + Sbjct: 181 EIFERVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231 >gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] Length = 231 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231 >gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 223 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 91/225 (40%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD +A IEL L+ E + V D G DGI + K FD ++LD+ L + G E Sbjct: 4 KILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ S +EDKV+GL GADDY++KPF EEL+ARIRA +RR G Sbjct: 64 VCSQIR-EFSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++++ T D+ V LDA V+ G I LT KEY ++ L + ++++ LN+++ Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LR K+ + + I TV G GYVLR + Sbjct: 183 GYDYTGETNIVDVYIRYLRSKI-DDPFSQKIIHTVRGVGYVLRSD 226 >gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 233 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + +++ L++E + + + G + +E + D ++LD+ + ++ G E Sbjct: 6 ILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVMMPNMDGIEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS DK+ GL GADDY++KPF+ ELVARI++ +RR R + Sbjct: 66 CMKIR-ETEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVRKY 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V +LS+N V + G + LT +E+ ++ELL+ + L+ E Sbjct: 125 THSSSVLEHEMVLDELSINTVTHEVTLAGESVKLTPREFAIVELLARHRGQVLSMEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + K+R+K+ Y++TVWG GY + + Sbjct: 185 KVWKEQYLESNNTLMVHVRKIREKIETDPRKPKYLKTVWGIGYKMEK 231 >gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V GE+ +++ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G I+LT EY ++ L++ +N T E Sbjct: 125 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 222 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + + G L D ++LDL L ++ G E Sbjct: 3 KILIVDDDPAIREILRAYLSHEGYELSEAADGVS--ALALAPAADLVVLDLMLPEMDGLE 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ E++VRG + GADDY++KPF+ ELVAR+RA++RRS Sbjct: 61 VARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRRSGI 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + + GDL + ++ V + G + L+ E+ ++ L+ ++E L ++ Sbjct: 121 HDRLVY--GDLEIVPGSREVYLAGRPVELSKLEFDLLLTLAQHPGMVFSRERLLERVWGS 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++DV + LRK+L + +IETV G GY +E Sbjct: 179 DFFGVERVVDVHVASLRKRLGDEPDRPRFIETVRGVGYRFKE 220 >gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603] gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603] Length = 244 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 18 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 78 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 136 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ N T E Sbjct: 137 NQNAVQVIKKEINIRGLEIDEMSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 196 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 197 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 244 >gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 229 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E K++DV + +LR+K+ +I TVWG+GY+ +E+ Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYMWKES 227 >gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 236 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 14/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F + G +E + D ++LDL L + G +V Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A S PV +++ + DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLR-ATSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGNDQ 122 Query: 123 AQSLIVT-------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A + G + ++++ V V G + + KE+ ++E L L Sbjct: 123 ASNADAAEGAEAEDEQILSGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+ ++ ++ + K +DV I +LR K+ ++ TV G GY Sbjct: 183 TRGQLIDRIWGADYVGDTKTLDVHIKRLRTKIEEHPSRPKHLVTVRGLGYKFE 235 >gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] Length = 240 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIED+K ++ ++ L+ E++ V+ G++G+E+ + + D ++LDL + I G Sbjct: 7 IKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R PV +++ S +D V GL+ GADDY++KPF+ +EL+ RI+ ++RR Sbjct: 67 DLIKEIRNKSNV-PVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 125 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L+ G I LT E+Q+I+ L N T+E + Sbjct: 126 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + +YI+T++G GY Sbjct: 186 EITFGFDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYK 230 >gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] Length = 229 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++D+ +A +E+ LKSE F V+ G D ++ D ILD+ L DI Sbjct: 1 MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF + +R PV +L+ + DK+ GL GADDY++KPFN ELVAR++A +RR Sbjct: 61 GFTLCGEIRREHHF-PVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRR 119 Query: 119 SRGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ GD+ +N + ++LT E+ ++ +L + ++ E Sbjct: 120 YTHYNENDRPVGDIIDFNGLVINRSTHECTLYDKPLNLTPLEFDILWMLCENRGQVISAE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I +LR+K+ +I+TVWG GY + Sbjct: 180 KLFESVWGEKYLDRNNTVMVHIRRLREKMGEPGRNPRFIKTVWGVGYKI 228 >gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 224 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L GDL + + + V G I LT +E+ + +L ++ L Sbjct: 121 KKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGASG---EYIKTIYGVGYKL 222 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A I+TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++ DA V G I L+ E++++ L + ++K L+H++ Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAE 239 >gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] Length = 233 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E F+ + GED + + YE + I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDYI KPF+ +E++AR+RA++RR Sbjct: 66 VCREIRAKSGV-PIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124 Query: 122 HAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 NL +V G+ + + KE +++ L+ N T+E Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+KL + K + TVWG GY Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPHWK--LGTVWGIGYKFE 231 >gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 321 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 8/240 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ++ ++ L++ F+V G + + + D ++LDL L + G E Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV +L+ + D++ GL+ GADDY++KPF+ EL R+++++RR+ Sbjct: 117 VFRRLR-AHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G L V+ A+T G + LT +E+ ++ L R T+ L H Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDETCEYLET 235 ++ + + V I +LR+K+ + + TVWG GY D T T Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDPGTPRPDSTPRPDST 294 >gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 226 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + + L+ E ++V T G D +E + DAIILDL L + G Sbjct: 1 MTILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60 Query: 61 EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---I 115 EV R LR P+ +L+ S D V GL+ GADDYI+KPF+ L+AR++A Sbjct: 61 EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R G + IV G+L ++ +V V+G I L+ E+ ++ L+ +++ + Sbjct: 121 TRPPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQII 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +RKKL +A ++YI+TV G GY L+ Sbjct: 181 DAVKGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQP 225 >gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074] gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074] gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 116/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEADPKEPKFIQNVWGVGYKIED 242 >gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271] gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271] Length = 231 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D ++LD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|217978668|ref|YP_002362815.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217504044|gb|ACK51453.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 233 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 171/228 (75%), Positives = 196/228 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+G +L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K+ TP+ ILSG ++IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRRLRVGKVKTPILILSGFAAIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I T DL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIATSDLIVNLDQKTVEVDGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASRGRNYIETVWGRGYVLREPLDDE 228 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A I+TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++ DA V G I L+ E++++ L + ++K L+H++ Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAE 239 >gi|257057064|ref|YP_003134896.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586936|gb|ACU98069.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 225 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G + + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLTIVLRGEGFDTAVVSDGSRALPALRELKPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 64 VCKAIRAESGV-PIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARLRRTES 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAETLTIGDLTIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 221 >gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 774 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 118/222 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L + LK+ N+ V + GE G + +E+ +ILD+ L + G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+ S EDKV GL +GADDY+ KP EEL+AR+RA++RR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL++N + Q + LT KEY ++EL + + + HL+ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I LR KL +A G IE V+G GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 2/155 (1%) Query: 8 DDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR 67 DD + +E +L V + ++ + D +I+D+ + G ++ + +R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 VAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 P+ +L+ + E + ++GADD+ISKP EL+AR+ + + RSR Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSRLWRNI 612 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 + + K+ E I + G+ Q + Sbjct: 613 AEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCF 647 >gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] Length = 240 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + + L++ FNV D + + D ++LD + G E Sbjct: 12 RILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGTTGLE 71 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +LR L+ TP+ +L+ + + K+ GL SGADDYI KPF+ EL++R+ A++RR Sbjct: 72 LLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRRI 131 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + I G+L + V + G I+L EY++++ + ++ L+++ Sbjct: 132 GREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQERVYSRGQILDYV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + G + + +DV I +LRK + + AG +NY++TV G GY Sbjct: 192 WGGNVYLDERTVDVHIRRLRKAI-SVAGHENYVQTVRGAGYRFSAQV 237 >gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 248 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 16/240 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ + + L+ E F+V + G +++ + D IILDL L D+ GF Sbjct: 1 MKILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGF 60 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++ R LR K + P+ + + + D V GL+ GADDY++KPF+ + LVAR++ I+RR Sbjct: 61 DICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRR 120 Query: 119 SR-----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 ++ + L + + V V G ++ + E+ ++ L+ Sbjct: 121 AQEAKPADTAASPFDRLQTVSRHFLVIKPEKFEVTVSGKQVQFSATEFAILLHLAQNPGR 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG---KNYIETVWGRGYVLREN 224 +++ +N + + IDV I +RKKLS AAG +N IETV G GY + E+ Sbjct: 181 VFSRQQIINAIKGDSYPVTERSIDVQILSIRKKLSEAAGNDSAQNIIETVRGVGYRMTED 240 >gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 228 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++D+ A+ + L L+ F V G++ D ++LD L Sbjct: 1 MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60 Query: 59 GFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G E+ R +R P+ +LS S ++K+ GL+ GADDYI+KPF+ EL++RI+A++ Sbjct: 61 GIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALL 120 Query: 117 RRSRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR V G+L++++ ++ V + I L E++++E N ++E L Sbjct: 121 RRRAPDRLEQQLVHGELTLDVISQRVHTKSGEISLGPIEFKLLEFFLRNPNRVFSREQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ E + +DV I +LRK L+ A IETV G GY L Sbjct: 181 NRVWGSTVYIEDRTVDVHILRLRKSLNK-AELPPMIETVRGSGYRLSP 227 >gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 225 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 ++L+++D++ + I LK+++F V GE+ I+L + + +ILD+ + + G+ Sbjct: 5 KVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R PV +L+ S D++RG + GAD+YISKPF+ + LVAR+ A++RRS Sbjct: 65 AVLKSIR-EHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSG 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + ++ A +V V G + L+ KEY+++ + L++E LN++++ Sbjct: 124 IQQEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ID + KLR KL + YI TVWG GY Sbjct: 184 YDYFGDARTIDTHVKKLRAKLKSKG---EYIRTVWGMGYKFDPE 224 >gi|256374761|ref|YP_003098421.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255919064|gb|ACU34575.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 228 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L+ + V + G+ +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLQFNGYQVDLAGDGQQALESVLSQRPDAMVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSTGDDLPILVLTARDAVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRTA 120 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL ++ + V I LT E+ ++EL LT+ L Sbjct: 121 TDVEEPVNLLRFADLELDPGTRDVRRGERPISLTRTEFALLELFLAHPKQVLTRGRILED 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K + A G + TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRK-TEAGGEPRLLHTVRGVGYVLRE 225 >gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 229 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++++ I++ LK +F V + GEDG++ + + D +LD+ L I GF+ Sbjct: 3 RILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GL+ GADDYI KPFN EL+ RI+AI+RR+ Sbjct: 63 VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTGD 122 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++L ++ + I +T KEY +++L N +++ LN Sbjct: 123 ESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K+IDV I +LR K+ + +IET+WG+GY + Sbjct: 183 LIWGYDYFGDPKLIDVNIRRLRSKIEDTPSEPEFIETIWGKGYRWK 228 >gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ A++ + L+ E F V G +E + +ILD+ + + G+ Sbjct: 3 KILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 VL +R K + PV +L+ + I+ K++GL +GADDYISKPF +E++AR+ A++RR + Sbjct: 63 VLEKIR-EKSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +I G L++N DA T+ + G I LT ++ ++ L+ R N T T++ + H++ Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D+ + ++R+ L++ + I T+ G GY Sbjct: 182 GMDYDGSDRAVDLAVKRIRQALTDWPETEGEIRTLRGMGYQF 223 >gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] Length = 227 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+K +A ++ L+ E F V VT G+ + D IILDL L +I G++V Sbjct: 5 ILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLMLPEISGWDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + DK+ GL+ GADDY++KPF +ELVAR++A +RRS Sbjct: 65 CREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRRSEYT 123 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+++ L ++ + V++ G + LT E+ ++ L+ ++ L+ L Sbjct: 124 PSLDSVLIIDQLEIDKARRLVKIGGKAVDLTATEFDILINLAASPGRVFSRMQILDKL-G 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LRKK+ YI T+ G GY +++ Sbjct: 183 EAYEGYERTIDSHIKNLRKKIEPDPESPAYILTIHGVGYKMKD 225 >gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + K E FNV GE+ + + D ILD+ + + G V Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 R +R +TP+ +L+ S EDK+ G + GADDY++KPF+ + L+A+ +A+ R Sbjct: 65 CRNIR-EVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRTGTL 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++++ L++N + V++ G + L+ KEY ++ LS + L+++ L++++ Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR+KL + A NYI TV G GY Sbjct: 184 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 221 >gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L++E ++ G++ + + + + D ++LD+ + + G Sbjct: 20 IRVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIMMPGLDGM 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+L +R A PV L+ ++ED++ G+ +GADDY++KPFN EE+V R+R + RR Sbjct: 80 ELLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHV 139 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + GDLS++ ++ VE G I LT KE++++ L L+K L+ Sbjct: 140 AAIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQ 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++++I LRKK+ + G+ I TV G GY ++ + Sbjct: 200 VWSYDFGGNGSVVEIYISYLRKKI--DSLGEPLIHTVRGVGYTIKAS 244 >gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 233 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ +A +++ L++E ++ + GE+ + + + FD I+LD+ + + G E+ Sbjct: 5 ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMDGLEL 64 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR K + P+ ++S + DK+ GL +GADDY++KPFN EL AR+++++RRS Sbjct: 65 CRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRRSY 124 Query: 121 GHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++ G L ++ VE G +HLT E+ ++ LL+ + + E Sbjct: 125 QYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + + V I KLR KL G I TVWG GY + Sbjct: 185 IFQHVWREKYFESNNTVMVHISKLRDKLEQETGD-KLIATVWGVGYKI 231 >gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +++ + L+ E + VY + G +EL EF IILDL L DI G E Sbjct: 3 KVLIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDIQGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + + +R + + S++ED++ GL +GAD+Y+ KPF+ ELVAR+ ++ RR + Sbjct: 63 ICKIIRDKSDVHIFMV-TAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGA 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G++ + D++ ++V+G I LT E+ ++ +L++ K LT+E ++ ++ Sbjct: 122 NNISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVF 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +RKK+ + YI TV GY Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGYKF 223 >gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] Length = 229 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] Length = 232 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E K++DV + +LR+K+ +I TVWG+GYV +E+ Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230 >gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550] gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550] gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 218 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 247 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 7/241 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + + PV +L+ +S + KV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 ICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + G + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFGETVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + + E Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSLPPSAEGTT 242 Query: 235 T 235 Sbjct: 243 A 243 >gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD + ++ +S F V V G ++ + A++LDL L G + Sbjct: 3 RILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRLPGKSGQD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + R +R + P+ +LS S + DKV L+ GADDY++KPF+ EL+AR+R +RR Sbjct: 63 ICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRRLIP 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + ++ V+ + G + LT +E++M+ K+ +++ LN ++ Sbjct: 123 SIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNELLNEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P + +D I +LR+KL + TV G GY E Sbjct: 183 GYHSYPTTRTVDTHILRLRQKLERDPADPIHFRTVHGTGYKFVE 226 >gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221 >gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435] gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus haemolyticus JCSC1435] Length = 241 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L LK E+F ++ G++ L ++ I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSS 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEVKSNDEPT 240 >gi|269796463|ref|YP_003315918.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098648|gb|ACZ23084.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 231 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V G G+ D ++LDL L + G E Sbjct: 3 RILVVEDEESYREPLTYQLTREGYDVVAVADGAAGLAAYDEGGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ DKV GL+ GADDY++KP++ EL+AR+RA++RR + Sbjct: 63 VCRELR-QRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRQP 121 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A G + +++D V V+G + L KE+ ++E L LT+ Sbjct: 122 AAAVDEDEADELVGSGPVQMDVDRHVVTVRGELVSLPLKEFDLLEFLLRNAGRVLTRGQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ + K +DV + +LR K+ + TV G GY L ++ Sbjct: 182 IDRVWGSDYVGDTKTLDVHVKRLRAKIETDPASPELLLTVRGLGYKLVDD 231 >gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator protein [Alteromonas sp. SN2] Length = 227 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + I+ L F + + G DG EF+ IILD+ L DI G+ Sbjct: 1 MKILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVMLPDINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR + TPV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 RILESLRQSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L+ DL +++ ++ V+ G I+LT KE+ ++EL+ R+ L + + + ++D Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +IDV I +LR K+ + A I+TV G GY L + + Sbjct: 181 INFDSDTNVIDVAIRRLRAKI-DDAFSPKLIQTVRGMGYKLTTDEE 225 >gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 239 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K LA I L + F G + L E+D ++LD+ + + GF+ Sbjct: 7 RILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMPGLDGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ L+ + D++ G + G DDY++KPF+ +EL ARIRA++RR Sbjct: 67 VARKVRADRGL-PIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRSAS 125 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + I+ G L +N + V + + LT ++ +++ L + T+ L Sbjct: 126 GEKEPEADTEIIRGALRLNPVSMKVRLGNDPVALTPGQFAILKQLVSYPDRVFTRNELLQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229 + + IDV I +RK + + YIET+ G GY +D+ Sbjct: 186 EVSGDYTGVYERTIDVHIKNIRKAIEDDPSHPRYIETIHGIGYRFTVPPGEDDA 239 >gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 233 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD+ + + L+ F V V G +G+ +E D ++LD+ + I G E Sbjct: 7 RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + E+++ GLQ GADDY++KPF+ +EL R+ +++RR+R Sbjct: 67 VCKRLR-QVSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRARM 125 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 V GDL + + A+T + G + LT +E+ ++ ++ L Sbjct: 126 PRPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLEK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + + V + +LR+K+ + TVWG GY Sbjct: 186 VWSWDF-GDQSTVTVHVRRLREKIERDPAKPTRVATVWGVGYR 227 >gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|38234503|ref|NP_940270.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 236 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ LK + F V G + +E + ++ DA ILD+ + + G+E Sbjct: 10 RVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMPGMDGYE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H + +L D V G + L+ E+ ++ L L L+K LN+ Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ I+TV G GYVLR+ Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKV--DTQEPALIQTVRGVGYVLRKP 234 >gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 226 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D I+LD+ L + G+ Sbjct: 1 MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR TPV L+ IED+VRGL+ GADDY+ KPF EL+AR+R ++RR R Sbjct: 61 GILQTLRRGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + +L ++L + V G RI LT KE+ ++ELL RK L + + + ++D Sbjct: 121 NHEPETLRSANLELDLLRRRVNRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+V + +LR K+ + I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRVKV-DDPFEPKLIHTVRGMGYVLE 221 >gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 117/220 (53%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +++ E F V++ G D ++ + + D +ILDL L G EV Sbjct: 18 VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ I+D+V GL +GADDY++KPF EL+AR RA++RR + Sbjct: 78 TRRLR-RSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ +++N V I T +E+ ++E + L+++M ++ ++ Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWGYD 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++V+I LR+KL + ++TV G GY LR Sbjct: 197 YMGDDNIVEVYIRHLREKLHDTP--PRLLQTVRGVGYTLR 234 >gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 116/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 224 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 121 KTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 106/223 (47%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + + L+ F V G L + D +ILDL L D GF++ Sbjct: 4 VLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDI 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R+LR + P+ +L+ D++ GL+ GADDYI KPFN E+VAR++A++RR Sbjct: 64 ARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRRVS 123 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G G L ++LD + G+ + LT E+ ++ L T+ L Sbjct: 124 GGTVRNRLEQGSLVLDLDGHQAWLGGNELELTPTEFALLSLFMRYPGHAFTRAELLEQGL 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ID I LRKKL IETV+G GY LR Sbjct: 184 GYAATGLERTIDSHIKNLRKKLEYDPAAP-VIETVYGIGYRLR 225 >gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 230 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +LK E F V++ G ++ + D I+LDL L + G EV Sbjct: 4 VLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S PV +++ S DKV GL+ GADDY++KP+ EL+ARIRA++RR Sbjct: 64 CRQLR-QTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRRGGEV 122 Query: 123 AQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++++ V V G ++ + KE+ ++E L LT+ + Sbjct: 123 EVEAPDDDGLVLQEDRVMMDVERHIVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + K +DV I +LR K+ + TV G GY Sbjct: 183 DRVWGADYVGDTKTLDVHIKRLRSKIERNPSRPEILVTVRGLGYKFE 229 >gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ L + L+ + V GE+G L + +D IILD+GL G Sbjct: 1 MRLLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGLPKQDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A++ TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G + LT EY+++ L +++ HLYD Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKKL+ I+TV G GY++ A Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPGA 220 >gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4] gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4] Length = 229 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F + G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRSRSGV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDS 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G + ++++ V+V G + L KE+ ++E L LT+ ++ Sbjct: 123 ELDVAQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIETDPAKPEHLVTVRGLGYKLE 228 >gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L+ E F + G G+ L + + AI+LD+ L G+ Sbjct: 1 MRILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TP+ +L+ D+ GL GADDY++KPF+ L+AR+RA+VRR Sbjct: 61 QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL + A + LT KE+ ++E L+ R ++K + ++D Sbjct: 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++V+I LR+K+ + G+ I T+ G GY+L + Sbjct: 181 TAYDGGANLVEVYIRSLRRKI-DVPYGRQSIRTIRGAGYLLARDG 224 >gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ I+ L+ + + V G++ +E K + IILDL L DI G E Sbjct: 7 KILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLMLPDISGEE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R S P+ +L+ S ++ + GL GADDY+ KPF+ +L+AR+ A++RR Sbjct: 67 ICKRIR-KNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRVVK 125 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + GDL ++ + G+ I++T EY+++ ++ T T++ +N Sbjct: 126 EPVADTGKIIFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDELIN 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +D I LR+K+ + Y+ TV G GY Sbjct: 186 MALGDDFEGFDRTVDTHIKNLRQKIEDDPKTPRYLVTVHGIGYRF 230 >gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++++ + I L+ + V+V G +G+ D ++LDL L + GF Sbjct: 4 KILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLMLPKMNGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR TP+ +L+ + + +++G + ADDYI+KPF+ ++ I A++RR Sbjct: 64 VCEILRKE-SRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRIEP 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S+I ++ D+ +V+V G + LT +E+++++ L + T++ L+ ++ Sbjct: 123 AASEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDRIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + KII+ I +RKKL YIET+ G GY + + Sbjct: 183 DYDYVGDEKIINTHIKNIRKKLGVD-----YIETIRGVGYKIEKE 222 >gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] Length = 232 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++++A IE+ LK+E F +Y G+D + + + + ILD+ L DI GF Sbjct: 3 INILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPDIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R K + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR Sbjct: 63 TICQKIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 121 GHAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++++ + ++ LT E+ ++ +L + ++ E Sbjct: 122 KYNSGEPNQEEQLIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVISSEE 181 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + V I LR+KL ++A YI+TVWG GY + Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKLHDSAEHPKYIKTVWGIGYKIE 231 >gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQNAAQEIEKKINIRGLEIDEVSRTVMLYGETINLTRTEYDILYLMAAVKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3] gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3] Length = 231 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D ++LD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEMR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ RI+ + RR + Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 119 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G++ V + V V G I LT +E+ + +L ++ L Sbjct: 120 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 241 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 1/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+ED+ ALA ++ L+ E + V V G +E + D ++LD+ L + G + Sbjct: 4 KVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLNGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +TPV LS + E++V GL+ G DDY++KPF+ E + R++ ++RR Sbjct: 64 VCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRRRAE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ ++ A T ++ R L +E ++ LL R ++++ L+ ++ Sbjct: 124 TPRAVYEFAGHRIDFRAWTAYLKDGRKEVLGEREMAILRLLIERAGQVVSRDEILDRVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 P + ID F+ +LR+ ++ TVWG GY + Sbjct: 184 QEVFPSSRTIDNFVVRLRRLFEPDPARPVHLHTVWGVGYRFTPQPE 229 >gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 222 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L + L+ + V GE+G L +DA++LDLGL + G Sbjct: 1 MRLLIVEDDKDLNRQLVTALEEAGYVVDSAFDGEEGHFLGDTEPYDAVVLDLGLPTLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ Sbjct: 61 SVLEKWRRDGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++L A V V G I LT EY+++ L + +++ HLYD Sbjct: 121 GHASNELTCGNVRLDLRAGRVTVDGSPIKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + ++VF+ +LRKK+ IET+ G GY L E A+DE Sbjct: 181 QDFDRDSNTVEVFVGRLRKKIGA-----EMIETIRGLGYRLGE-ARDE 222 >gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 263 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 123/241 (51%), Gaps = 7/241 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ ++V G G L D I+LDL L + GF Sbjct: 4 RILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVDGFT 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + P+ +L+ +S +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 64 VCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRT 123 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + V I LT E++++ L R T+ Sbjct: 124 DRIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V + LR KL YI+TV+G GY L + ++ E E Sbjct: 184 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSFNQAMEEAE 243 Query: 235 T 235 Sbjct: 244 A 244 >gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 640 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 125/222 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++DD AL + L + + V + GE E + +D IILD+GL DI G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR KI++P+ +L+ + + KV+ L +GADDY+ KPF+ EEL ARIRA+ RR Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL V+ + V Q + +T KEY M+EL N + + +++L+ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P + + LR+KL K++I+TV+G GY L+ Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++ I+DD + ++ +L F + + + + D +++D+ + + G E Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 + R LR P+ LS + + GADD+ISK Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTM 617 >gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] Length = 229 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L+SE F V G + + L + + D I+LD L G E+ Sbjct: 8 VLVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWMLPGTSGIEI 67 Query: 63 LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R + R A TPV +LS S DKVRGL++GADDYISKP++ EL+AR++A R Sbjct: 68 CRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRSR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ D+ ++ + V + + L E++++ + +++ L+ ++ Sbjct: 128 PATMGERLIYNDILLDSETHKVFRGENELKLGPTEFRLLTTFMEKPGRVWSRDQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L + GG++ I TV G GY L Sbjct: 188 GRDIYVDTRTVDVHVGRLRKVLGSH-GGEDLIRTVRGAGYAL 228 >gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 230 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L++ F + + G+D ++ FD +ILDLGL D GF+ Sbjct: 3 RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR + P+ IL+ + DKV GL++GADDY++KPF EL+AR+RA +R G Sbjct: 63 ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQTG 122 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 T ++ +NL + V+V + L+ KE+ ++E L++E L+ + Sbjct: 123 KPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P I+DV++ LRKKL + IETV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGSD-----RIETVRGMGYRL 220 >gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + + +++ L + + V + GE+ +++ FD +ILD+ L G+ Sbjct: 3 KILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKKDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R ++ S PV I++ + D+V G + GADDYI+KPF+ + +AR++ +++ Sbjct: 63 ICREIK-EYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTI 121 Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G L +N + +V +G + L KEY+++ KN L++E L ++ Sbjct: 122 VNNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IDV I LRKK+ YI+T+ GY Sbjct: 182 YGFVGNDRTIDVHIKNLRKKIG-----GEYIKTIRSVGYKFE 218 >gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 227 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++++A+ ++ L+ + +NV V + G + +E+ K +F +ILDL L DI G E+ Sbjct: 4 ILIIEDEESVANVLKAYLEKDKYNVSVCNSGMEALEVYKEIDFQLVILDLMLPDIDGEEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + + +S+ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CKIIRRTSDVYIFML-TSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINTS 122 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++ + + VE++G I T E+ ++ L + K L++E + ++ Sbjct: 123 EKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVFG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I +RKK+ YI TV GY Sbjct: 183 IDFDGYDRTIDVHIKNIRKKIEEDTKNPKYIITVTKVGYKF 223 >gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311] gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 17/239 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ +NV + GE+ +E D ++LD+ L + GF V Sbjct: 12 ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFAV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR P+ LS + SI ++V GL GADDY+ KPF+ +EL ARI I+R Sbjct: 72 CRRLRAE-SCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRRVGSG 130 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q ++ GDL V+ + + V RI LT E+ ++ELL + + Sbjct: 131 SATVEPREIPSGQGVMRVGDLVVDTNRRQVNRGTERIALTYTEFSLLELLFRDPGHVVPR 190 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENA 225 L L+ R +++++DV++ +LR KL I TV G GY + E A Sbjct: 191 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPEMILTVRGIGYSSQRMGEPA 249 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + + +K F+V V G +G+ L EFD +LD+ L D+ GF Sbjct: 7 RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGFA 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V LR P+ L+ S++D V+GL G DDYI+KPF+ EE+VARIRA++RR+ Sbjct: 67 VTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTKA 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ D+ V G I ++ E++++ L L ++K L+H++ Sbjct: 127 DDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D E I++ +I LR+K+ I T G GYVLRE Sbjct: 187 DYDFRGEAGIVESYISYLRRKIDVDGLEP-LIHTKRGVGYVLREP 230 >gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 223 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E+VAR++AI R S Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN ++ Sbjct: 122 GESEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 220 >gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ A+A ++ L+ E + V G ++L + D +ILD+ + + G Sbjct: 1 MHILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RALR + +TPV +L+ + + D+V GL +GADDY++KPF +EL+AR+RA+VRR Sbjct: 61 DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +L + V ++ LT E+ ++E L++E Sbjct: 121 YAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMFR 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +DV++ LR+KL G I TV G GYVLRE+ Sbjct: 181 TVWGHDFGAGSNGLDVYVGYLRRKLEQD-GEPRLIHTVRGVGYVLRED 227 >gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. avium ATCC 25291] gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] Length = 239 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238 >gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 233 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L + + V + G D +++ K + ++LDL L + GF+ Sbjct: 5 KILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLLLLDLMLPGMDGFD 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + ++ T + +L+ DK+ GL+ GADDYI+KPF+ EL+AR++A++RR+ Sbjct: 65 VCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L V+ + V V ++ LT KE++++++L K L +E L+ Sbjct: 125 SSFNEAEDDVYNSENLKVDFERHEVYVNDRKVDLTLKEFELLQILIKNKGRILKRETLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +DV I LRKK+ +IET+ G GY Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPRFIETIRGVGYRFNP 231 >gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 236 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++++D+ + + + L++ + + GEDG+ + D +ILDLGL D+ G + Sbjct: 6 RIVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGLPDMRGAD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRA+R S PV ILS E+K+R L +GADDYI+KPF EL+ARIR +R S Sbjct: 66 VLRAIR-EWSSVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L ++L + V V G + LT EY++++ L+ +T L ++ Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E ++ + V+I +LR+K+ +I T G GY LR ++ + E Sbjct: 185 SGYEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRLRLPHEETSVE 235 >gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 228 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLI+DD L + L+ F V V G G+ FDA++LD+ + + G E Sbjct: 4 RLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V+R +R K S P+ +L+ D+V GL+ GADDYI+KPF+ EL+AR+RA+ R + Sbjct: 64 VVRRIR-QKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRATP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A IV GD+++++ + V V G LTG E+ ++ L+ R + +E L Sbjct: 123 DAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEAGR 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + +DV I LR+KLS+ I+TV G GYVL ++ Sbjct: 183 GDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVLAKD 226 >gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 231 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD AL ++L SE + V + G + +E E D ++LD+ + + GFE Sbjct: 4 KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ S DKV GL+ GADDYI+KPF+ +EL+ARI+AI+RR Sbjct: 64 VLKKIR-ERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G L ++ +A TV G + LT E++++ LL R T+ Sbjct: 123 REGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + G + IDV I +LR K+ I+TV GY Sbjct: 183 VSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 253 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 119/239 (49%), Gaps = 17/239 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL D ++LD+ L + GF V Sbjct: 13 VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDGFAV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR P+ LS + +I +KV GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 73 CRRLRAE-SCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ G+L V+ + + V RI+LT E+ ++ELL + + Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENA 225 L L+ R +++++DV++ +LR KL I TV G GY L E A Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYCSQRLGETA 250 >gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] Length = 233 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ + + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVRAKANV-PIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DL +NL +V G + + KE +++ L+ N T+E Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ + + +DV + +LR+K+ + A + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDHANWS--LATVWGIGYKFE 230 >gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 240 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + + ++LK E F +Y + GE G L K D I+LD+ L D G+ Sbjct: 9 KILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIMLPDEEGY 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + P+ +S + D+V G G DDYI+KPF+ +E+ RI+AI+RRS Sbjct: 69 EVCKKIR-KSSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILRRSS 127 Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H + + G ++ + V G I L KEY+M L+ N ++KE Sbjct: 128 YHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKEKLC 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++ I V I KLR+K+ +I + G GY KDE+ Sbjct: 188 SEVWGEDYIGFDNTIMVHIRKLREKIEKDPSNPKHILNIKGLGYKFV--IKDES 239 >gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L+ E + + GED + + D I+D+ + + G+ Sbjct: 3 KILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIMMPRMDGWA 62 Query: 62 VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ALR + P+ +L+ KVR + GADDY+ KPF+ ELV R++A+++R + Sbjct: 63 LCEALRDSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLKRYK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G +S++ V + R+ L KE++++ ++ N T +E + L+ Sbjct: 123 IVASHTVEVGCISLSKTDYDVTMPEGRVKLPPKEFELLFKMASYPNKTFAREQLIEQLWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR++ G I T+ G GY L Sbjct: 183 VDYEGDERTVDVHVKRLRERFPEQTSGFR-IVTIRGLGYRLE 223 >gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 226 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G++G+ + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTRDWVSQGLSEAGYVVDQASDGKEGLRFALQESYALIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ALR A TPV L+ ++ED+V+GL+S A+DY+ KPF+ EL+AR+RA +R Sbjct: 61 QVLKALRTA-NQTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLRNHS 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H L ++G L ++ ++V G I LT KE+ ++ LL+ R + + + + ++ Sbjct: 120 PHHTYLKISG-LEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E +DV I +LR K+ + I TV G GY R + E Sbjct: 179 INFDSETNTVDVAIRRLRSKV-DDPFDVKLIGTVRGMGYRFRADEHHEA 226 >gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 229 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDDK +A L++ F V + G G + D I+LD+ L GF+ Sbjct: 3 KVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIMLPGEDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ ++S DK+RGL GADDYI KPF+ ELVAR+++ + R Sbjct: 63 VCREIRAEKDI-PILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISRYEQ 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ G+L ++L + V +Q I L KE++++ L+ +K+ Sbjct: 122 LTNRESSRPQVLRCGNLVIDLSSHQVFLQDKEILLPNKEFELLAFLAKNPGIVFSKDTLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ + YIETVWG GY R Sbjct: 182 ERVWGEDSLGDTSTVSVHINRIREKIEEDSSKPYYIETVWGAGYRFR 228 >gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 225 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++L L + V GE+ L + +DA+ILDLGL + G Sbjct: 1 MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQFLGETEPYDAVILDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R I+TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ + + + + + + HLYD Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + I+VFI +LRKKL IETV G GY L ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLGA-----ERIETVRGLGYRLAPLPGEDAA 225 >gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC 15579] gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC 15579] Length = 234 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD + + I+ L E ++ G + +E + E+ +I+D+ + + G Sbjct: 4 IKILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQGEEWHMVIMDVMMPVMDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E +R +R + + + S DK+ GL GADDYI KPF+ EL+AR+++ +RR+ Sbjct: 64 EAMRRIREKSKVSIIIL-SAKGEDSDKIIGLGMGADDYIVKPFSISELIARVKSNIRRAI 122 Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GD+ N++ V G + LT KE ++++L N TK Sbjct: 123 YYNETSANNEDKIYQYGDIKFNMNKYIVTKGGKELALTAKEMKILKLFFENPNRVFTKVQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V + +LR K+ + + IETVWG GY L Sbjct: 183 IYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDSNNPKLIETVWGIGYKL 230 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL ++DD+A+ S+ L ++V + + G + +E+ DA++LD+ + + G E Sbjct: 27 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+ARIRA++RR++ Sbjct: 87 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTKP 146 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL+++ + V I LT E+ ++E+L LT+ L + Sbjct: 147 DDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEEV 206 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V++ LR+K G I TV G GYVLRE Sbjct: 207 WGFDFPTSGNALEVYVGYLRRKTEAD-GESRLIHTVRGVGYVLRE 250 >gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E K++DV + +LR+K+ +I TVWG+GYV +E+ Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227 >gi|331270596|ref|YP_004397088.1| two-component response regulator [Clostridium botulinum BKT015925] gi|329127146|gb|AEB77091.1| two-component response regulator [Clostridium botulinum BKT015925] Length = 231 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++++ I+L+L+ ++F V GEDGI+ +ILD+ L I GF+ Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGINGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK++GL+ GADDY+ KPFN EL ARI +++RR Sbjct: 66 VCEILRKNHPKVGIIMLTALGQDVDKIKGLEHGADDYMIKPFNPLELAARIISLIRRMNF 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V+L++KT +++LT KE+ ++++ +L+++ L+ Sbjct: 126 SNDTSSEILISEPFKVDLNSKTAYKNEEKLNLTPKEFLLLKIFIENIGRSLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR KL + Y++TVWG GY+ +E+ Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGIGYIWKED 231 >gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 228 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L+S ++ + G+ Y+ D ++LD+ L + G + Sbjct: 7 KILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPHMDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDYI KPF +EL+ARI+A++RR Sbjct: 67 VLKWIR-RDSEIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNT 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++++++ V + I + KE++++ L+ N T+E L ++ Sbjct: 126 ESVDRDILKFKGLTIDINSYIVIYKDKEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQGD--QDWQIETVWGVGYKFE 226 >gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] Length = 231 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231 >gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803] Length = 234 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 115/221 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L + + V + + E+D +ILD+ L ++ G Sbjct: 1 MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R P+ +++ +I DK+ GL +GADDY+ KP + EL AR+RA++RR Sbjct: 61 TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q ++ G + ++ V + LT KEY ++ELL L++ M ++ ++ Sbjct: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 PE + V + LR+KL +A + IETV G GY L Sbjct: 181 LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221 >gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 7/237 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD ++ + L + + V G+ + D I+LD+ L D GF + Sbjct: 16 VLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDGFRL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TPV L+ + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+ Sbjct: 76 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 135 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + V L + V G + L+ E++++ L K L Sbjct: 136 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 195 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 ++ + +I+D ++ LR+KL + G + TV G GY LR +DE Sbjct: 196 VWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLRLP-RDEPGAGTR 250 >gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE+ + Y + ++LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRAKSDT-PIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + + +NL +V G + + KE +++ L+ N T+E Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPTWS--LGTVWGIGYKFE 231 >gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++ L+ F V + D G +G+EL + D +ILDL L + G EV Sbjct: 5 ILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + + + S D+V GL+ GADDY+ KPF+ ELVARI AI+RR R Sbjct: 65 AARLRQESDVFIIML-TARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRRSA 123 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L ++ + + V V I LT E+ ++ L+ R L++E L+ ++ Sbjct: 124 SPVIDATLRFAHLRIDPERREVYVGDQAIDLTTTEFDVLLALARRHGRVLSREQILDLVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++DV++ ++R+KL AG I+TV G GY + A Sbjct: 184 GDNFYGTDRVVDVYVGQVRRKLEAVAGVP-LIQTVRGVGYKFIDAA 228 >gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + I+ L + +++VY G +E + D ++LDL L D G Sbjct: 1 MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ S +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ Sbjct: 61 TVCRKIR-EISNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 119 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +L V D++ V + ++LT E+ ++ L N ++ + Sbjct: 120 TLSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTPTEFDILHALMSTPNKVFSRSDLIEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID I LR K+ N A YI TV G GY Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD L + L+ E F V G + +D +ILD+ L G + Sbjct: 3 RILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDGMK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +++ S IEDKV GL +GADDYI+KPF+ +EL ARI+A++RR R Sbjct: 63 VCRKIR-ETKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRK 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++V GDL ++ A V +G +IHLT +E+++++LL+ N +++E ++ Sbjct: 122 KEGVIMV-GDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 E I+DV+I LR KL + I+TV G GY+LR +T Sbjct: 181 SHEEGSNIVDVYIKNLRNKLGDKP--PRLIQTVRGYGYILRTEDVGQT 226 >gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] Length = 233 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R ++ P+ +LS S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCREIRAKSVT-PIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L++NL +V G + + KE +++ L+ N T+E Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWS--LSTVWGIGYKFE 231 >gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905] gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905] Length = 241 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E+ L+ ENF N+ G+D ++L K +D I+LD+ L DI GF Sbjct: 6 KILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDISGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +R +TP+ +S S+ DK+ GL G DDYI+KPFN E+VARI+ I+RR + Sbjct: 66 ELCTEIR-KHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124 Query: 121 GHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S G ++N ++ T+ V + T KE +++ N T Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ E K + + I KLRKKL + I + G GY +D CE Sbjct: 185 YEFVWGNDVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPKEDSLCE 241 >gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + K E FNV GE+ + + D ILD+ + + G V Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 R +R +TP+ +L+ S EDK+ G + GADDY++KPF+ + L+A+ +A+ R Sbjct: 65 CRNIR-EVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++++ L++N + V++ G + L+ KEY ++ LS + L+++ L++++ Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR+KL + A NYI TV G GY Sbjct: 184 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 221 >gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 16 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 76 VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 196 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 238 >gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 233 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L+ + V + G + D ++LDL L + G E Sbjct: 3 RVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLPGLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S PV +L+ + + D++ GL+ GADDY++KPF+ EL R+++++RR+ G Sbjct: 63 VCRRLR-ETGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRRAAG 121 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S I G +V+L A+ V + I LT +E+ ++ L ++ + Sbjct: 122 PPTSTAGGVIDVGPFTVDLPAREVRGENGTISLTVREFDLLAYLVRHPRRAFSRPELMEA 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I +LR+KL + + TVWG GY Sbjct: 182 VWGWSY-GDQSTVTVHIRRLREKLEADPSSPSILVTVWGVGYRYEPPGP 229 >gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 223 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + + V G I LT +E+ + +L ++ L Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 218 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L E ++V G +G+++ + D ++LD+ + + GFE Sbjct: 4 RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR + PV +L+ +E++V+GL +GADDY+ KPF EEL+AR+RA++RR G Sbjct: 64 ALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S DL ++ DA+ V G R+ LT KE++++ L L++++ ++ ++ Sbjct: 124 DDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++V+I LR+K GGK I+T+ G GY+LR + Sbjct: 184 GYDYSGESNVLEVYIAMLRQKTEEH-GGKRLIQTIRGAGYILRGD 227 >gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K LA + L+ E + G G++ + D I+LDL L + G EV Sbjct: 4 VLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMGTEV 63 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + L+ ++ PV +L+ D+V G + GADDY+ KPF+ EL+ RI+A++RR Sbjct: 64 CKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSL 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G ++++ D TV V G I LT E++++ L+ R ++++ L ++ Sbjct: 124 PDEPSGKTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLKNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +D I +LR KL A + I+TV G GY + E Sbjct: 184 WGYNYVGDTRTVDTHITRLRTKLGPAG---DLIKTVRGFGYKMEEP 226 >gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991] gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991] Length = 250 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A + L L++E + +Y ED + + D +LD+ + I GFE Sbjct: 25 KILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMPKINGFE 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + PV +L+ DK++GL GADDYI+KPFN E+VAR++A +RR Sbjct: 85 ICKMIR-EKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYTK 143 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q + + D+ V + + LT E+ ++ L + +T E Sbjct: 144 YNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELFE 203 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR+K+ +I+TVWG GY + E Sbjct: 204 AVWKEKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 250 >gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Ralstonia solanacearum PSI07] gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Ralstonia solanacearum PSI07] Length = 228 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG+ L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++++LR A+ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + I+TV G GYVL + Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFA-PKLIQTVRGMGYVLEDPE 225 >gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 224 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + ++ L E+++V G + + +D IILD+ L G+ Sbjct: 1 MRLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMAYIDMTSYDGIILDIMLPGKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR + TPV +L+ SIED+VRGL GADDY+ KPF EEL+ARIR ++RR Sbjct: 61 EILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++ D + V G+ I L+ KE+ ++E L KN +T++ + +D Sbjct: 121 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +IDV+I LRKK+ +A + I TV G GYV+REN Sbjct: 181 FDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMRENE 224 >gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 229 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D++ L +L LKS+ + + + GE + L + D I+LD+ + + G EV Sbjct: 4 IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV LS S DKV + GADDY++KPF+ EEL ARI+A +R + Sbjct: 64 CREIRSQLSI-PVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAMN 122 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G L ++ +A EV+G I LT KE +++ + N T E + ++ Sbjct: 123 PSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V+ + V I LR+K+ YI+TV G GY Sbjct: 183 NLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >gi|148239881|ref|YP_001225268.1| two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. WH 7803] gi|1055347|gb|AAB38749.1| response regulator PhoB [Synechococcus sp. WH 7803] gi|147848420|emb|CAK23971.1| Two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. WH 7803] Length = 234 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDIP 58 ++L++EDD ++ ++E L++E F V G D + L D ++LDL L + Sbjct: 5 KLLVVEDDDSIRETVEEALRAEGFEVKSCGNGADAMALLSAPNTEGVDLLVLDLMLPGLG 64 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R LR TPV ++S S D+V GL+ GADDY+ KPF ELVAR RA++RR Sbjct: 65 GLDLCRQLRKLNNHTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 124 Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S+ + ++ TG+L + V G + L+ KEY+++ELL +++ Sbjct: 125 SQQIASVPSEDRQVVQTGNLCLYAQECRVTRDGEDLTLSPKEYKILELLIRNPKRVWSRD 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + K +DV I LR+K+ +I TV G GY Sbjct: 185 QLLERIWGIDFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 233 >gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ ++ + L L+ + + V + GE +EL + FD ++LDL L I GF V Sbjct: 4 ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDGFTV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + +++ + +DK+ GL GADDY+ KPF+ +EL RI +++RR Sbjct: 64 CQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRRINVG 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L+++G+ ++L + LT E+ ++ L N T++ L+ Sbjct: 124 DEAASKMTDLLISGNFKMDLKNNKFYSSDEIVKLTPTEFSLLHFLMEHPNDLFTRDELLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E+K++DV I ++R+K+ Y+ T WGRGY+ + N Sbjct: 184 AVWGENYVGELKVVDVNIRRIRQKIEKDPSSPMYLCTEWGRGYLWKVNE 232 >gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] Length = 253 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGFE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246 >gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+ED+ + I K N+ VY G+D + + D IILD+ + ++ G+E Sbjct: 4 RVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +L+ S +DK+ G + GADDY++KPF+ + L+AR A+++R Sbjct: 64 VCRQVRSRSGV-PIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEG 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G +N A +EV + LT KEY+++ LL K ++++ LN + Sbjct: 123 HVQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +++D I KLR KL +I TV+G GY E Sbjct: 183 WGIDFEGDTRVVDTHIKKLRSKLGR---ESRHIRTVFGTGYRFEEEE 226 >gi|160934057|ref|ZP_02081444.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753] gi|156866730|gb|EDO60102.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753] Length = 234 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + +I + L+ E F V+ G + +E+ + II+D+ + + G Sbjct: 5 ILVVDDDKEIVQAIAINLEQEGFRVFKAYDGLEALEIAMSQDLQLIIIDVMMPKLDGLSA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ ILS S DKV GL GADDY++KPFN EL+AR+++ VRR Sbjct: 65 VLKIR-ERKNFPIMILSAKSEDTDKVLGLSMGADDYLTKPFNSMELIARVKSQVRRYTTL 123 Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I G L +L+ +++ G +HLT E ++ +LL E Sbjct: 124 GDIHAKTGGKTIEIGRLCYDLETRSLFADGEPVHLTATESKIFDLLIRNAGRIFPAEEIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + V I ++R+K+ Y++ VWG GY + ++ + Sbjct: 184 ERVWNEPAFSAENTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEKHGR 234 >gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 233 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E + + GE + ++ + I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS DKV GL+ GADDYI KPF +E+VAR++A++RR Sbjct: 66 VCREIR-KNNNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYHM 124 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DLS+NLD +V G + + KE +++ L+ N T+E Sbjct: 125 PQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L++++ + + +DV I ++R+K+ + IETVWG GY Sbjct: 185 LLDNIWGYEYIGDTRTVDVHIKRIREKIKDHVHWN--IETVWGIGYKFV 231 >gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L E ++V G +G+++ + D ++LD+ + + GFE Sbjct: 4 RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR +TPV +L+ +E++V+GL +GADDY+ KPF EEL+AR+RA++RR G Sbjct: 64 ALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S DL ++ DA+ V G R+ LT KE++++ L L++++ ++ ++ Sbjct: 124 DDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++V+I LR+K GGK I+T+ G GY+LR + Sbjct: 184 GYDYSGESNVLEVYIAMLRQKTEEH-GGKRLIQTIRGAGYILRGD 227 >gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 222 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+ I L + + G++ +EL + ++DA++LD+ + + GF Sbjct: 3 RILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDVLMPRLDGFG 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V RA+R S P+ L+ + E+ +RG GADDY++KPF+ L+A+++A I R Sbjct: 63 VCRAVRRQ-SSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + V+ A+ G I L+ +EY+++ L + L++ L+ ++ Sbjct: 122 ERKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + + +DV + LR L A I+TV+ GY L E Sbjct: 182 LDFEGDDRAVDVRVRSLRAALGKAGKQ---IKTVFKAGYRLEE 221 >gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] Length = 220 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+K L I LK + ++V G++ +E ++DAI+LD + + GF Sbjct: 1 MKILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAMMPVMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+A R + TPV L+ + ED + GL GADDY+ KPF+ EL+AR+RAI+RR Sbjct: 61 EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + I+ + +NL K+V G + LTGKEY+++ELL L + L++E ++D Sbjct: 121 ATADNEIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DE +IDV I +RKKL + IET G GYV Sbjct: 181 FSDEASSNVIDVLIKNIRKKLGEHG---DIIETKRGLGYV 217 >gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803] gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803] Length = 242 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NRNDAQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ +WG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPEFIQNIWGVGYKIED 242 >gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 232 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DDK + +I++ LK+E V+ G D + L + E I++D+ + + G + Sbjct: 6 VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS S DK+ GL GADDY++KPFN EL+AR+++ +RR Sbjct: 66 TFKIR-EKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRF 124 Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A T G + +N + K V V G + LT EY+++ELL K + E + Sbjct: 125 ASYKRNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I ++R+K+ Y++ VWG GY ++E Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +EL L E ++V G +G++ + FD IILD+ L I G E Sbjct: 5 KILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + P+ +L+ + DKV GL GA+DY++KPF EEL+ARIRA ++ R Sbjct: 65 VLRKIR-QTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G+L ++ D V I LT KE+ ++ KN LT++ L ++ Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+DV+I LR K+ + I TV G GY+L+ Sbjct: 184 GYDYIGDTNIVDVYIRYLRSKI-DDKYNIKLIHTVRGVGYILK 225 >gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 235 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L +E F V+ G + L + + D +ILD+ L + G EV Sbjct: 6 ILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLPGLDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R L V +L+ + DK+ GL GADDY++KPF+ ELVAR++AI+RR+R Sbjct: 66 CRQLHRETTVY-VLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRAA 124 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H + ++ L ++ + + VE G R+ LT +E+ ++ L+ T+E L Sbjct: 125 RVLDVHQRPVLQFAGLLIDPERREVERNGIRVDLTPREFDLLYTLASYPGRVFTREELLQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++DV I LR+KL + G ++TV G GY Sbjct: 185 RVWGPDFAGIDRVVDVHIGTLRRKLDDDQHGTPLVQTVRGVGYKFV 230 >gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 228 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIRKDSNV-PVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V +++ ++ V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL G +ETVWG GY Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226 >gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 229 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L++ED+ ALA ++ L+ E ++V V GED + + D +++D L + Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 59 GFEVLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G EV R R + P+ +L+ D+VRGL +GADDY+ KPF+ EL ARIRA++ Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 117 RRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR R A+ +I GD++++ A V+ IHL E+++++ L ++E L Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ E + +DV + +LRK L N ++ I TV GY NA Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAFDVNA 229 >gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917] gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917] Length = 256 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE +EL D ++LD+ L + GF V Sbjct: 14 ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDGFAV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI +I+RR Sbjct: 74 CRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGRG 132 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL V+ + + V RI LT E+ ++ELL + + Sbjct: 133 SATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 192 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 193 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242 >gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alteromonas macleodii ATCC 27126] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD +A I L E G G + E DA+ILD+ L ++ GF Sbjct: 1 MKVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL LR +TPV +LS S +EDKV+GL++GA+DY++KPF EEL+AR+ R Sbjct: 61 SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++LI GDL+++L + V I L KE+Q++E L K +T+ M L ++ Sbjct: 121 EGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P+ +IDV I +LR+K+ A IETV G GY + + Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAFNVP-LIETVRGTGYRIAD 223 >gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 231 >gi|297588498|ref|ZP_06947141.1| response regulator [Finegoldia magna ATCC 53516] gi|297573871|gb|EFH92592.1| response regulator [Finegoldia magna ATCC 53516] Length = 239 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+K ++++ + L+ E F V G++ I++ ++ IILDL L + G Sbjct: 9 IKILIVEDEKNISNAEKKYLEVEGFEVDQAFDGQEAIDMINTTDYSLIILDLMLPKVSGE 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V+ +R + PV +++ + + GL+ GADDYI+KPF+ + LV +++ I+RR Sbjct: 69 KVMEIIRSRTET-PVIMVTAKIDESEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE 127 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +S++ D T G I+LT E+Q+I+ L N T++ + Sbjct: 128 KLGLPKSEKIYFDNGRVSISFDDNTFIKDGESINLTSNEFQIIKTLFSNPNKIFTRDEII 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + ID I +R K+ + YI+T++G GY L Sbjct: 188 ELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233 >gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL +DD S+ L+ E F G + + L + + D + LD+ + + G+ Sbjct: 1 MTILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A PV LS S D V GLQ GADD+I KPF K EL+ARIRA +RR Sbjct: 61 EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120 Query: 121 GHAQSLIVTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + + E G I L+ +E ++ELL + + ++ LN Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + PE + +D I KLRK++ G IETV G GY R Sbjct: 181 WGMDYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYRYR 224 >gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 223 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39] gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39] Length = 229 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + IE LK E + V+V + G++GI + K D IILD+ + + G E Sbjct: 7 KILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R +T + L+ S ++ G GADDYI+KP LV+RI AI+RR+ Sbjct: 67 ACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + GDL ++ +A V G ++ L KE++++ LL+ + T+E L Sbjct: 127 SSSDEVSDNKVEIGDLVIDREAYLVFQNGEKVVLAKKEFELLYLLASKPGKVYTRESILK 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + IDV I KLR+KL Y+ TV G GY Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKLGE-----RYVATVKGVGYKFE 227 >gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea] Length = 247 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV GE+ + + + + I+LD+ + + GF V Sbjct: 13 ILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFGV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+G+ I D++ GL+ GADDY+ KPF+ +EL ARI++++RRS Sbjct: 73 CQEIRKE-SDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSDRM 131 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L+++ + + V R+ LTG E+ ++ELL R + ++ + L Sbjct: 132 TVNSNIPTSGINQIGFLTIDTNRRQVYKNNERVRLTGIEFCLLELLISRAGSPFSRAVIL 191 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + + I T G GY+ + Sbjct: 192 QKVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 240 >gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621] gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621] Length = 242 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS S DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ N T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA2] gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA3] gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL097PA1] gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL099PA1] gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+++ + ML+ E F V G DG+E+ D ++LDL + +PG E Sbjct: 3 RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLMMPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + + S DKV GL+ GADDY++KPF+ ELVARIRA+ RR Sbjct: 63 VCRQLRQRGNVGIIMV-TARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++++ V V G + L KE+ ++E+L +T+ ++ + Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I +LR K+ + I TV G GY + Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRIITVRGLGYKFQ 225 >gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + ++ +LK+EN++ GE +E FD +ILDL L GF Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ ++ + PV IL+ DK+ G G DDY++KPF+ EL+ RI+A++RR R Sbjct: 63 VLKEIKNREDV-PVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G ++VNL + V G + LT KEY ++ELL N TKE ++ L+ Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + I+ V + +LR+K+ I+TVWG GY Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 224 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L +ED+ +A+ ++ LK + F V D G++G E+DAIILD+ + G Sbjct: 1 MNVLFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMVPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ + ++D++ GL GADDYI+KPF EELVARI A+VRRS Sbjct: 61 SILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSI 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+L+V G L ++ + V I LT +E+ ++E L T+ L H++ Sbjct: 121 GDRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P ++DV I ++RKK+ +IE++ G GY R Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPV-DEAGWIESIRGVGYRFR 221 >gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 228 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD+++A ++ L+ E+F V GE G + +++DL L + GF Sbjct: 1 MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R A P+ ++S + DKV+ GADDY++KPF+ EL AR++A +RR Sbjct: 61 ALCEKIR-ASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 D+ +++ + V +G +I LT KE++++ L+ TKE Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++G + + + V + +R KL + YIETVWG GY Sbjct: 180 VWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222 >gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis] Length = 369 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+KA+ I+ +L+ E + + E+ I + K + D I+LD+ + + GFE Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 197 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ SS DK+ G GADDYI+KPFN EL ARIRA ++R+ Sbjct: 198 ACTLIR-EYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 256 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + V G + + + Q+++ N L+K+ Sbjct: 257 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 316 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I KLR+K YI TV G GY N + Sbjct: 317 VWGYPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGYRFIPNPE 365 >gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 234 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 12 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 72 VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 192 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 234 >gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Corynebacterium variabile DSM 44702] Length = 225 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ LA + L++E V V + GE G+ + ++DAI+LD+ + + G+ Sbjct: 1 MRILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR TPV L+ D+V GL +G DD+++KPF+ LVAR+RA+VRR Sbjct: 61 RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ A+ I LT +E +++ L +TK+ L +++ Sbjct: 121 RGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G + + I++V+I LR K+ + G+ I TV G GY L N Sbjct: 181 GSFDGDTNIVEVYIGHLRAKV-DRPFGRAAIGTVRGAGYRLDRNG 224 >gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT] gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT] Length = 222 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED++ + ++ K F+V + G G+++ K D +ILD+ + + G+ Sbjct: 1 MQILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMIPCLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +++R P+ +L+ S EDK+ G + G DDY++KPF+ + LVA+++A+++RS Sbjct: 61 TVCKSIR-QNSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSG 119 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +N + V++ G ++L+ KEY ++ + L+++ L+ + Sbjct: 120 IEEKETNIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++ +D + +LR+KL + NYI TV G+GY Sbjct: 180 WGFDYDGGLRTVDTHVKRLREKLKEKS---NYIVTVRGKGYKFE 220 >gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+++D+ + +++ L+ EN+ + D GED +++ ++D I+LDL L + G Sbjct: 6 MHLLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLMLPKMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R +TP+ +L+ ++ G + GADDYI KPF+ E+V R+ AI++R++ Sbjct: 66 QAAEKIR-ESKNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 LI ++ + V G+ ++LT KEY ++ L+ + +E Sbjct: 125 SGKPKEKDNPDLIKMPHFEIDDQSHRVLADGNAVNLTPKEYDLLLYLAQSPDQIFGREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 185 LREVWKYEFFGDLRTVDTHVKRLREKLTKHSEPAAKMIVTVWGLGYKF 232 >gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 232 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 10 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 70 VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 190 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 232 >gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As] Length = 242 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L F V G DG+ L +D I+LD L G+ Sbjct: 18 MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + + PV +L+ + D+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 78 SVLSELRARQTT-PVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ + E G R+ LT KE+ ++ LLS R L++ + ++D Sbjct: 137 TRLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV I +LR KL + TV G GYVL Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVLE 237 >gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L E + V + GE +++ + IILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R + P+ +L+ S +D+++G + G D+Y+SKPF+ + L+AR+ AI+RRS Sbjct: 65 QVCREIR-RHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRRSG 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + ++ + V + G + L+ KE++++ K L++E LN++++ Sbjct: 124 AVSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ + + I+T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGDKG---DLIKTIWGIGYKFE 222 >gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 121 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ RI+ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ V + V V G I LT +E+ + +L ++ L Sbjct: 121 KTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 229 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 114/220 (51%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + ++ + E ++V + G+ G++L + I+LDL L + G+E+ Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K+ P+ +L+ D V GL+ GADDY++KPF+ +EL+AR+ A +RR R Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ GD + A+T+ G + L+ KE+ ++ L L+++ ++ ++ Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ID F+ LR K+ ++TV GY Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] Length = 251 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 125/245 (51%), Gaps = 27/245 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +++ I L L+ E F+ + + GE+ + + Y D IILDL L I G+E Sbjct: 6 RILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR+ PV +LS DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCRRLRMRSSV-PVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRCPK 124 Query: 122 HAQSLIVTGDL------------------------SVNLDAKTVEVQGHRIHLTGKEYQM 157 + G+ +N +V +G + + KE ++ Sbjct: 125 KRGDAALPGESAETVRRAEPEGGLRSGNYIEYPELIINQSNYSVFYRGKPVEMPPKELEL 184 Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 + L+ N T+E L+H++ + + +DV I +LR+K+S + I TVWG Sbjct: 185 LYFLASSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKISGNGAWE--IATVWGI 242 Query: 218 GYVLR 222 GY R Sbjct: 243 GYKFR 247 >gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41] gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IEL LK+EN+NV+ ++ + + D ILD+ + +I GF + Sbjct: 15 ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGFTI 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R + PV +L+ DK+ G GADDYI+KPF ELVAR++A +RR + Sbjct: 75 LQKIR-ETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTLY 133 Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 QS D +N + + V + ++ LT E+ ++ LS + ++ E Sbjct: 134 NQSSKPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELFQ 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I LR+K+ ++ +I+TVWG GY + + Sbjct: 194 EIWGEKYFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTIEK 240 >gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 269 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 17/237 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L+ + V GE+ +++ D ++LD+ L + GF V Sbjct: 28 ILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLPKLDGFAV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR P+ LS + +I ++V GL GADDY+SKPF+ +EL ARI I+RR Sbjct: 88 CRRLRAE-SIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPG 146 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ G+L V+ + + V G RI LT E+ ++ELL + + Sbjct: 147 ASVAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVPR 206 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRE 223 L L+ R +++++DV++ +LR KL I TV G GY L E Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRLNE 263 >gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 226 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + MLK E + +V G +GI+ + D ++LD+ L + G + Sbjct: 3 RILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDY++KP++ EL+ARI+A++RR Sbjct: 63 VCRELRSRSSV-PIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRRRGE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++++++ V V G + + KE++++E+L + LT+ ++ + Sbjct: 122 AEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I +LR K+ G +I TV G GY L Sbjct: 182 WGSDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225 >gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 260 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 39 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 98 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 99 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 158 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 256 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ L + L+ F V G + + D I+LD+ L D GFE Sbjct: 6 RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDGFE 65 Query: 62 VLRALRVAKI-----STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI- 115 V+R LR PV L+ + ED++ GL++G DDY++KPFN EELV RIRAI Sbjct: 66 VVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R S A +V G L ++ D+ V G + L+ E+ ++ +L L+K L Sbjct: 126 RRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I+ +I LR+K+ I TV G GYVLR Sbjct: 186 ELVWQYDFGGDDSIVASYISYLRRKVDLD--EPKLIHTVRGTGYVLR 230 >gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 232 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D+ + + L E++ V GE +++ + IILD+ + + G Sbjct: 4 IKILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPKMNG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +EV R +R P+ +L+ ED++ G + G D+YISKPF+ + LVAR+ AI+RR Sbjct: 64 WEVCREIR-ETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRI 122 Query: 120 RGHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++ A TV V G +I L+ KE++++ + L++E LNH Sbjct: 123 GKAPEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + + ID + KLR K+ +YI+T+WG GY Sbjct: 183 VWNYDYFGDARTIDTHVKKLRAKIGEKG---DYIKTIWGMGYKFEAEE 227 >gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 135/223 (60%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L SI +LK++ ++V G++ ++ + ++D II D+ + + G Sbjct: 1 MKVLVIEDEVDLNRSIVKLLKTQQYSVNAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR +I TPV +L+ S+EDKV GL +GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 61 GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +L+ GD S++L KT++ +G + LT KEY+++E L N L++E H++ Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E IIDV + +RKKL G + I+T G GYV + Sbjct: 181 DFDYVGESNIIDVLVKNIRKKL----GNPSIIQTKRGMGYVFK 219 >gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185] gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185] Length = 228 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 118/219 (53%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E ++V G + + + D ++LD+ L G E Sbjct: 4 RVLIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVMLPGKNGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ + D V GL++GADDY++KPF ELVAR+RA + R Sbjct: 64 VCRAIRAESDV-PIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAELVARVRARL-RRGD 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL+++L A +V G I LT E+ ++ L+ + ++E+ L ++ Sbjct: 122 AEPETVTIGDLTIDLAAHSVTRDGTPISLTPLEFDLLLALARKPWQVFSREVLLEQVWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 182 RHAADTRLVNVHVQRLRAKVEKDPEKPEIVVTVRGVGYK 220 >gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 223 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + I +LK+ + V V G GIE+ + Y+FD IILD+ L I GF Sbjct: 4 KILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ + +D+++G + DDYI+KPF+ L+ R+ A++RR Sbjct: 64 VCEIIRKKSDV-PIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRYSN 122 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ + V + I LT KE+Q++E L T+ L+ Sbjct: 123 NPSKNSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDM 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 IWGYDYFGDTRVIDTHIKNLRQKLNVD-----YIKTIRGVGYKIEK 223 >gi|117928972|ref|YP_873523.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649435|gb|ABK53537.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 225 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F + G+ + + + D ++LDL L G + Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPHFVFDGDKALAAFREVKPDVVLLDLMLPGTDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 64 VCRQIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYVVKPFKPKELVARLRARLRRTDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GD+++++ +V G I LT E+ ++ L+ + ++E+ L ++ Sbjct: 123 PAPEILTIGDVTIDVAGHSVTRDGQPIPLTPLEFDLLVALARKPRHVFSREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPDHPEIVLTVRGVGYK 221 >gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 225 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K +A IEL L +E + V G G+ + D ++LDL L + G EV Sbjct: 7 VLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPVLDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R +TP+ IL+ I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 67 ARRIR-KTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 185 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225 >gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 238 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+ ++ + L+ + V ++ G D + + D ++LDL + + G EV Sbjct: 11 VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLMMPGLDGIEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +L+ + D+V GL+ GADDY++KPF+ ELV RIR+++RR+ Sbjct: 71 CRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAPQ 130 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL+ + D + E G + LT +E+ ++ L ++ L+ ++ Sbjct: 131 DRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 R + + V + +LR+K+ + I TVWG GY + Sbjct: 191 GWRF-GDQSTVTVHVRRLREKIEDHPAQPRRIVTVWGVGYRYEPSE 235 >gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] Length = 231 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +++Y G++ + + ++ D +ILD+ + G EV Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKRNGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RRS Sbjct: 66 CQQVREENTV-PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124 Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR+KL G+ I TVWG GY + + Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231 >gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 232 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E K++DV + +LR+K+ +I TVWG+GYV +E+ Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230 >gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2] Length = 227 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ + + + +L E + V V D G + D ++LDL L + G E Sbjct: 3 RILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LRV P+ +L+ S DKV GL+ GADDY++KP++ EL+AR+RA++RR+ Sbjct: 63 VCRELRVKSSV-PIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++++ V V+G + + KE++++E+L +T+ ++ Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + TV G GY Sbjct: 182 IWGEDYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGYKFE 226 >gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 230 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ F V G I E D IILD+ L D+ GF Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + LR + ++P+ L+ EDK+ GL G DDY++KPF+ +E+VARI+AI R + Sbjct: 66 VTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I GDL+++ D V + +I L+ E++++ L L N L+K L+H+++ Sbjct: 126 DDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+KL I+T G GY+L+ Sbjct: 186 YDFNGDAGIVESYISYLRRKLDIHTEEP-LIQTKRGFGYMLK 226 >gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL103PA1] Length = 232 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L+ + V G + + DA+I+D+ + + G Sbjct: 3 MHILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR P+ IL+ +++D+V GL +GADDY+ KPF +EL+AR+RA+ RRSR Sbjct: 63 EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 LS + + V RI LT E+ ++ + L + L Sbjct: 123 PEPGPDEAPEQLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++V+I LR+K + G I TV G GYVLRE Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEARLIHTVRGVGYVLRE 229 >gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L E+D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++++LR ++ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G +I LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +IDV I +LR K+ + I+TV G GYVL + Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKI-DDHFEPKLIQTVRGMGYVLEAPEE 226 >gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL + +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGYKIEK 231 >gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] Length = 234 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L++ + V G++ K D +ILD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLPGLSGIE 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL +GADDY+ KPF+ EL+AR++++ R Sbjct: 64 LCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S S++ GD+ ++ D V G I L EY+++E ++E LN + Sbjct: 124 SPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLNSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV I +LRK L+ G + I TV G GY L E Sbjct: 184 WGRDVYIDERTVDVHIGRLRKLLNPD-GEADPIRTVRGAGYALDEQ 228 >gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 229 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D ++ ++ L + + V T G+ + + + D I+LD+ + + G++ Sbjct: 5 ILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMDGYQF 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR R + + PV I++ D V GL GADDYI KPF EL ARIRAI+RR H Sbjct: 65 LRQFRQERQT-PVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRGEEH 123 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ ++ TV V G + LT E+ ++ L T+ + L D Sbjct: 124 PDKQEILRAGEIILDETTHTVTVSGKPVSLTPIEFDLLATLMRSPGRVYTRAELVEILAD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++V + LR K+ YIET++G GY R+ Sbjct: 184 SGFAGIDTTLNVHVRNLRLKIEPDPKNPRYIETIFGIGYRFRKP 227 >gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e] gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes HCC23] gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes Finland 1988] gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL R2-561] gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes 10403S] gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes J0161] gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818] gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900] gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J2-003] gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071] gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e] gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes HCC23] gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900] gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071] gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818] gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 238 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ + + ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225 L ++ +++ ID + +LR+KL + + I TVWG GY Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPE 237 >gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 247 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + ++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 21 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 140 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR K+ +I+ VWG GY + + Sbjct: 200 ESVWKEKAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 247 >gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] Length = 227 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKVLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 228 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 2/225 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +A +++ L+ E +NV + G +G+ +D IILDL L + GF V Sbjct: 5 ILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMDGFSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R PV ILS I+DKV GL GADDY++KPF+ EEL+ARIR +R++ Sbjct: 65 LKEIRKKSSI-PVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIKA 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I ++++L V G +I LT KE+ +++ L + LT+E L +++ Sbjct: 124 NTKKISYDGITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWGYN 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E I+DV+I LR K+ + I+T+ G GY LR+ + Sbjct: 184 YIGETNIVDVYIRYLRSKI-DEPFSNKLIQTIRGVGYSLRKEKNE 227 >gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ RI+ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G++ V + V V G I LT +E+ + +L ++ L Sbjct: 121 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 14/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A ++ L +E + V V G ++ DA++LD+ L I G EV Sbjct: 18 ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGLEV 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R A TP+ +L+ D + GL GADDY++KPF+ ELVAR++A++RR Sbjct: 78 TR-RIQADHPTPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVERA 136 Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q +V GD++++ + V G +HLT E++++ +L+ T LT+E Sbjct: 137 QQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRERL 196 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D I LR+KL + I TV G GY A Sbjct: 197 LAEVWDWADASGTRTVDSHIKALRRKLG-----PDLIRTVHGVGYAFEPPA 242 >gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes Clip81459] gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J2-064] gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J1-175] gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes 1816] gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes 220] gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes str. Scott A] Length = 238 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ + + ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLARSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225 L ++ +++ ID + +LR+KL + + I TVWG GY Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPE 237 >gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330] gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071] gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330] gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071] gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 226 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + I+ L + +++VY G +E + D ++LDL L D G Sbjct: 1 MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ S +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ Sbjct: 61 TVCRKIR-EVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 119 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+L V +++ V + ++LT E+ ++ L N ++ + Sbjct: 120 TLSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID I LR K+ N A YI TV G GY Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K +A IEL L +E + V G G+ + D +ILDL L + G EV Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R +TP+ IL+ +I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 67 ARRIR-KTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 185 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225 >gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I+L +D++++ +E ++ + ++ G + + + + D +ILD+ + + GF Sbjct: 1 MKIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR + P+ ILS I DK G ++GADDY+ KPF+ EL RI A++RR Sbjct: 61 DVCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I GDL + ++G R+ LT KE++++ ++ T++ L Sbjct: 121 HQAGETEERESIKLGDLEIFFKRYEARLKGKRVELTPKEFKILAYMASHPGKVYTRKQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ E+ I VFICK+R+K+ Y++TVWG GY E Sbjct: 181 TYVWGEDYVGELTGIAVFICKIREKIEEDPSKPKYLQTVWGVGYKFGE 228 >gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16] gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ ALA + L + V V G D L + +DA+ILDLGL + G Sbjct: 1 MRILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPYDAVILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A++ PV IL+ S +KV G+ +GADDY++KPF EEL+ARIRA++RR+ Sbjct: 61 SVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G + +N A V V G + LT E+++++ L ++K H+Y Sbjct: 121 GMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LR+KL IETV G+GY +R + + Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----VIETVRGQGYRMRPPSPPQP 224 >gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 226 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 112/223 (50%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D+ + + L+ E + V G+ +++ + D ++LD+ + G+ Sbjct: 3 RILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVMMPGYDGWT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ D++ G DDYI+KPF+ + LVA+++A++RR G Sbjct: 63 VCREIR-RTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHG 121 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + ++++ +A V + G L+ EY+++ L L++ LN Sbjct: 122 EGEENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ +++ +D I +LR KL N YI+TV G GY Sbjct: 182 VWNYEYYGDLRTVDTHINRLRIKLGNRGS---YIQTVRGYGYR 221 >gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 229 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G + L + +DA++LDL L ++ G E Sbjct: 6 KILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S ++ GL+ GADDY+ KPF+ +EL+AR++A+ RR Sbjct: 66 ICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQEA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ L ++ A+ V + G I LT +E+ ++ + ++ L Sbjct: 126 MGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++++ + E ++ I +LR K+ + A I TVWG+GY + + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGYKFAVDKTE 237 >gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] Length = 243 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + + ++ ++ V++ G I++T EY ++ L++ KN T E Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKIGD 243 >gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 224 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 121 KTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] Length = 238 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++++A + L+ F V V GE G+ L F+ IILDL L + GFE Sbjct: 12 KVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + +TP+ I+S DK+RGL GADDY++KPF+ ELVAR++A + R + Sbjct: 72 ICRQVR-EQKNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQS 130 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I + ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 131 LTSGARSNNDIIEIRGIKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDELF 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 191 KEIWDMESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRFK 237 >gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis z3032] gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter turicensis z3032] Length = 234 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 9 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 69 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 189 DMNFDSDTNAIDVAVKRLRAKI-DNDYETKLIQTVRGVGYMLE 230 >gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202] gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202] gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL103PA1] Length = 226 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+++ + ML+ E F V G DG+E+ D ++LDL + +PG E Sbjct: 3 RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + + S DKV GL+ GADDY++KPF+ ELVARIRA+ RR Sbjct: 63 VCRQLRQRGNVGIIMV-TARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSP 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++++ V V+G + L KE+ ++E+L +T+ ++ + Sbjct: 122 EVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I +LR K+ + I TV G GY + Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGYKFQ 225 >gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 226 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L + F V GE+ ++ + + IILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ +L+ S +D+++G G D+YI+KPF+ + LVAR+ AI R + Sbjct: 65 QVCREIR-QYSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSN 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G + +N A V + G + L+ KE++++ + L++E LN+++ Sbjct: 124 VLAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + ID + KLR KL YI+T+WG GY N Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGAKG---EYIKTIWGMGYKFEVN 225 >gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 234 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L +E F V+ G + L + + D ++LD+ L + G EV Sbjct: 6 ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R L V +L+ + DK+ GL GADDY++KPF+ ELVAR++AI+RR+R Sbjct: 66 CRQLHRDTSVF-VLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRVI 124 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + + + VE G R+ LT +E+ ++ L+ T+E L Sbjct: 125 RAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELLQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++DV I LR+KL + G ++TV G GY Sbjct: 185 RVWGPDFAGIDRVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKFV 230 >gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] Length = 245 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 117/230 (50%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +I+ L+ E ++V G + +++ + +I+D+ + + G Sbjct: 15 KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGMDGLS 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ ILS + DK+ GL GADDY+SKPF +EL+AR+++ +RR Sbjct: 75 ATMKIR-ESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ G L+++LD K + V G + +T E++++ LL + E Sbjct: 134 LGSKAAGPEDNNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 194 IYERVWEEAAYATENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243 >gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] Length = 225 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ +A +++ L+ E F V V GE G+ + +D I+LD L + G Sbjct: 1 MRILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR + TP+ +L+ I D+V GL +GADDY+ KPF EEL+ARIR+++RR + Sbjct: 61 EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL++N V+ + LT KE+ ++E L + +TK+M LNH++D Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 + I+V+I LR K+ G I T G GY + Sbjct: 181 YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223 >gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 225 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++L L + V GE+ L + +DA+ILDLGL + G Sbjct: 1 MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R ++TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ + + + + + + HLYD Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + I+VFI +LRKKL IETV G GY L ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLGAD-----RIETVRGLGYRLAALPGEDAA 225 >gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] Length = 242 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ + ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 257 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ + V + G G L D I+LDL L + GF Sbjct: 3 RILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILSYGPLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR K+ YI+TV+G GY L + + E Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLELPSNGSSTNNEE 242 Query: 235 TA 236 TA Sbjct: 243 TA 244 >gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 228 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A L++ F V + G G + + D ++LD+ L + GF+ Sbjct: 3 KILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLPGMDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ ++S DK+RGL GADDYI KPF+ ELVAR++A ++R R Sbjct: 63 VCRRIR-EKRNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQRYRQ 121 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 DL+++ V ++G I + KE+ ++ L+ +KE Sbjct: 122 LTGQHSGDQLLRRKDLTIDRKGHHVYLKGKEIAMPNKEFSLLLFLAENPGVVFSKETLFE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + ++R+K+ + YIETVWG GY R+ Sbjct: 182 RIWGEDSLGDTATVSVHVNRIREKIEPSTAKPEYIETVWGVGYRFRK 228 >gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 226 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA I ++L++E F+ G+ + + + D ++LD+ L G + Sbjct: 4 RVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKDGTQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VAREIRAESGV-PIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ TV G RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PGPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGYK 221 >gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 250 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 11/238 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR ILL++D++ + + L LK ENF +V G + + L K + FD I+LD+ L D Sbjct: 12 MRTENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD 71 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I GFE+ R +R +TP+ ++ SS DK+ GL G DDYI+KPFN E+ ARI + Sbjct: 72 IDGFELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQL 130 Query: 117 RRSRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R S + S+ + V G +H T KE +++ L N T Sbjct: 131 RGQSMLLNNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFT 190 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E ++ + K + + I KLRKK+ YI + G GY + K++ Sbjct: 191 AEQLYEQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKEQ 248 >gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 ++L++ED++++ I + LK F V T+ G + + L + D +LD+ + I GF Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + L+ +DKV L GADD++SKPF+ EL+AR+++++RR Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVN 122 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +G +++L +K + G + LT E+ +++ ++NT L++++ L+ Sbjct: 123 VQRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 H++ + KI+DV I +LR+K+ Y++TVWG GY + Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGYKWK 228 >gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 233 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +DD +A I++ L +E + V + G + +EL +ILD+ + ++ G Sbjct: 4 IQILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+RA+R P+ +LS + DK+ GL +GADDY+ KPFN EL+AR+++++RRS Sbjct: 64 EVVRAVRAEYGI-PILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSI 122 Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q +I L ++ + TV V+ I+LT E+ ++ LL+ + E Sbjct: 123 YLNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I KLR KL + GG I+TVWG GY + Sbjct: 183 AIFEAVWKDRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIEP 233 >gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp. subtilis str. 168] gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp. subtilis str. 168] gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yclJ gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis] gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp. subtilis str. 168] Length = 227 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + +D IILD+ L + G Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR + Sbjct: 61 TICRKIR-ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + +I T ++N + V + G + LT KE+ ++ L ++E Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKL A+ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227 >gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 181 bits (460), Expect = 5e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + IE+ LK+E F + G + +E+ + E IILD+ + ++ G + Sbjct: 5 KILVVDDEKEIRDLIEIYLKNEGFQIIKASNGREALEILEEEEVHLIILDIMMPEMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+AR+++ +RR Sbjct: 65 ACMKIREEKNM-PIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTK 123 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I DL +N+ V++ G I LT +E+ ++ELL+ + + E Sbjct: 124 LNNNAAAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V + K+R+K+ YI+TVWG GY + Sbjct: 184 YQKVWKEDFFDSPNTVMVHVRKIREKIEKDPRNPQYIKTVWGVGYKIE 231 >gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120] gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120] Length = 610 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 122/236 (51%), Gaps = 1/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L +++ V + GE EL ++ I+LD+ L + G Sbjct: 1 MRILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR A + +L+ S DK+ GL +GADDY+ KPF+ +EL ARIRA++RR Sbjct: 61 SLCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V ++LT KE+ ++EL T ++ + L+ Sbjct: 121 TSLPPVLAWGSLRLDPSSCEVTYADKPLNLTAKEFSILELFLRNNQRTFSRGAIVEKLWS 180 Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 D PE I I LR+KL A +IETV+G GY L+ A + C E Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLQAAGANYAFIETVYGMGYRLKALAHEANCLITEP 236 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 2/116 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+ L + + L++ V + + + D +ILDL + I G E Sbjct: 476 KIMIVDDNLHLLNFLHRYLEALGITVKALKEPQYFWDTLIEFSPDLLILDLEIPHINGIE 535 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + + +R PV L ++ + GADD+++K LVA+I Sbjct: 536 LCQVVRNDPYWQFLPVLFLVNNFNVNTFEKIFAVGADDWVNKSVIDSRLVAQILQH 591 >gi|325105314|ref|YP_004274968.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324974162|gb|ADY53146.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 229 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 100/222 (45%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I ++EDD+ L + LKSE + T G D +EL + ++LD L + G E Sbjct: 6 KIAVVEDDENLRFLVVHRLKSEGYTTVETGSGGDAVELVLKENPEIVLLDWMLPAMQGSE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V + LR V +++ + DK+ G DY++KPFN + LVA + + V+ + Sbjct: 66 VCKTLREKGYDGLVIMMTAKAQDLDKIDAYNFGVSDYVTKPFNMDVLVALLDSKVKFLVN 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G +I LT E +++ N ++++ + ++ Sbjct: 126 HDKHEISRFGDMEHHPPHIHSIVKNGKKIELTILENRILLYFLKNVNKVISRDDLMLEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D+ I +LRKK+ Y++T+ G GY Sbjct: 186 GYNSDVNTRTLDMHIVRLRKKIEENPDRPEYLQTIRGVGYKF 227 >gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium] Length = 228 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + I+ L + +++VY G +E + D ++LDL L D G Sbjct: 3 MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ S +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ Sbjct: 63 TVCRKIR-EVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 121 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+L V +++ V + ++LT E+ ++ L N ++ + Sbjct: 122 TLSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID I LR K+ N A YI TV G GY Sbjct: 182 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 225 >gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 232 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ AL + L E F+V V GE G++L + + IILD+GL I G EV Sbjct: 9 VLVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGLPRIDGLEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R+LR V +L+ DK+ GL GADDY+ KPF+ E+VAR+RA++RR R Sbjct: 69 CRSLR-RFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRRM 127 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL+++L + V + I LT E+ ++ +L+ N ++ + ++ Sbjct: 128 PDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++DV + ++R+KL + AG Y+ TV G GY + Sbjct: 188 GAGWVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGYRM 229 >gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] Length = 218 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ LK E + V G I F +ILDLGL G Sbjct: 1 MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K TPV + + ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS Sbjct: 61 AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G L++N + V G + L+ KEY ++ L+ R L++ LY+ Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+V I LRKKLS + I+TV G GYVL Sbjct: 181 YESLIGSNAIEVHIHHLRKKLSEDS-----IKTVRGVGYVLE 217 >gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185] gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195] gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223] gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 241 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ I G+ S++L + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPAQQEAQISFGEFSLDLATREMYHGDESIALTSGEFAVLKVLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 249 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61 +L+++D+ A+ ++ + L+ + + V G +EL D +ILDL L + G + Sbjct: 26 LLVVDDEDAIRETVAVALEEQGYQVLQAADGRQALELVHTAERLDLMILDLMLPGLNGLD 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ SS D+V GL+ GADDY++KPF EL+AR R+++RR + Sbjct: 86 LCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRRQQ 145 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S GD+ + V V+G + + KE++++EL T+E L + Sbjct: 146 SHASEATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLERI 205 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + K +DV I LR+KL Y+ TV G GY Sbjct: 206 WGSDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 248 >gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 268 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 17/240 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +++++D+ A+ + + L+ + V + GE+ + L + D ++LD+ L + GF V Sbjct: 25 VMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGFAV 84 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 85 CRRLRAE-SCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 143 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 144 SATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 203 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226 L L+ R +++++DV++ +LR KL I TV G GY + ENA Sbjct: 204 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGYASQRMGENAP 263 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + LK + + V + G I+ C+ ++ DA+ILD+ + + GF Sbjct: 15 KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR I P LS S+EDK+ GL G DDY++KPF+ EE+VAR++ ++RRS Sbjct: 75 LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGF 134 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S I D+ ++ + V G+ + L+ E+ ++ + T L+K L+H Sbjct: 135 DATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ EV +++ ++ LR+KL G K I T+ G GYV+RE Sbjct: 195 VWNYDFGGEVNVVESYVSYLRRKL--DTGDKRLIHTLRGVGYVMREP 239 >gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + I + L++E +NV V G++G+E+ + +ILD+ L G ++ Sbjct: 6 ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ ++S S DK+ GL +GADDY++KPFN EL+AR+++ +RRS Sbjct: 66 CRKIR-ESYIIPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSFYM 124 Query: 123 AQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ N + TV + G+ + LT EY+++ LL+ + E Sbjct: 125 NTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSVEK 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+KL + I+T+WG GY + Sbjct: 185 IFESVWKQKFYESNNTVMVHIWRMREKLESNPKEPKIIKTIWGVGYKIE 233 >gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 229 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +V GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 222 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L+ ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MRVLLVEDEARLSATLARGLKAEGFVVVAVGTGVDGLREAVDNNFDVVILDIMLPGHSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G L ++ +V+ + I LT +E+ ++E L K+ +TK L +++D Sbjct: 121 PQRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADILRNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHYHGPDNVVEVYVGYLRRKI-DIPFGTNTIETIRGVGYRL 220 >gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +++Y G++ + + Y+ D +ILD+ + G EV Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKRNGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RRS Sbjct: 66 CQQVREENTV-PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124 Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR+KL G+ I TVWG GY + + Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231 >gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 252 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV GE+ +E D ++LD+ + + G+ V Sbjct: 14 ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDGYGV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 74 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 132 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I DL ++ + + V G RI LTG E+ ++ELL R ++ L Sbjct: 133 HGGGSIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEIL 192 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 193 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 241 >gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 234 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ + + L+ + V G +G+++ E D I+LDL L + G E+ Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRSR 120 LR + + + S D+V GL+ GADDY++KPF+ ELVAR+ A RR + Sbjct: 65 TARLREKSDVFILML-TARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ + ++ DA+ G + LT E+ ++ L+ N L++E + ++ Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++DV++ ++R+K+ G N I T G GY + Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFVD 225 >gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] Length = 257 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + + V G +L + F I+LDL L + G Sbjct: 24 RILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNEDGIS 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 84 ICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQTR 143 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 144 ELPGAPSQQMEVVEFGSWTLDLSTRTLKRDGNIVTLTTGEFSVLKALVQHPREPLTRDKL 203 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 204 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDGAE 256 >gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 219 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 6/221 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL++D+ + + + L + + + G+D + + + +D +ILD+ + ++ G EV Sbjct: 2 LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPEMNGIEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--RG 121 + +R P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A++RR + Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 EQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKVWGY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 DYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 218 >gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 247 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V GE+ +++ ILD+ + + G E+ Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G I+LT EY ++ L++ +N T E Sbjct: 140 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247 >gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 224 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 7/225 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ + + L ++FNV+ GE+G+ + + D +ILD+ + + Sbjct: 1 MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIMMPVMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G +L LR + PV +L+ S +DK++G GADDYI+KPF+ + L+A+++A+ R Sbjct: 61 GMTMLEKLR-EVSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S L++N + V V G I L+ KEY+++ L + L+++ L++ Sbjct: 120 SREDIDSSSQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +D + +LR+KL + N I TV G GY Sbjct: 180 VWGLDYYGDIRTVDTNVKRLREKLLD---RSNLIVTVRGSGYKFE 221 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L+ + + L+ E + V G D + + + DA+ILD+ L DI G E Sbjct: 42 RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+R+++RR Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGL 161 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ D+ V G I LT E++++ L L+K L+ + Sbjct: 162 VAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRV 221 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I+++++ LR+K+ AG I TV G GYVL+ Sbjct: 222 WNYDFGGQANIVELYVSYLRRKI--DAGRNPMIHTVRGAGYVLKP 264 >gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] Length = 223 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD L ++E L G+ G+E +FDA++LD+ L D G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R I TPV +L+ + S++D+V GL SGADDY+ KPF EL+AR+ AI RR++ Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G L ++L + V + LT E+ ++E L +T++M HL++ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V I +LR K+ I+TV GRGYVLR Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEP-LIQTVRGRGYVLR 221 >gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 229 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L SE + V+ G + + K IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R +T + L+ +V G +GADD I+KP + LV++++A++RR Sbjct: 66 EACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVKALLRR 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G++ +N + V G I L KE++++ LL+ + N +E+ Sbjct: 126 LKEDNAAEQEDIVKVGNIVINREEYKVINDGQEIVLPRKEFELLALLTSKPNKVYKREVI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 186 LDKVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 228 >gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262] gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262] gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL J1-023] Length = 238 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ + + ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 SSEEAAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225 L ++ +++ ID + +LR+KL + + I TVWG GY Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPE 237 >gi|320332927|ref|YP_004169638.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754216|gb|ADV65973.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD A+ + L+++ V G G E D +LD L + G E Sbjct: 3 RILIVDDDPAILEILGAYLRADGHAVLEAQDGHAGQARL--PEADLALLDWMLPGVSGLE 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + RA R P+ +L+ ED++ GL+ GADDY++KPF+ E+VAR+RA+ R Sbjct: 61 LARAQRRLHPDFPLLLLTARGEEEDRLLGLEVGADDYVTKPFSPREVVARVRAL--LRRA 118 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +G L ++ +T + G + L+ E+ ++ L+ +++ L ++ G Sbjct: 119 RIHDRVSSGGLELDERQRTAHLDGQALALSKLEFDLLLTLARHPGFVWSRDRLLERVWGG 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++DV + LR+KL A +I TV G GY +E+A Sbjct: 179 DFPGVERVVDVHMAGLRRKLGEAPEQPRFIRTVRGVGYCFQEDA 222 >gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15] gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15] Length = 247 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 1/230 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +A + L E + V V G+ +DA++LD+ L PGFE Sbjct: 18 RVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLPGFPGFE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR I PV +L+ +++D+VRGL SGADDY++KPF+ EEL+AR+RA+ RR Sbjct: 78 LCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGPL 137 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V G+L ++ + ++LT KE+ ++E + LT+E+ L + +D Sbjct: 138 VSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWDL 197 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E ++DV + LR+K+ G IETV G GY LR +A + Sbjct: 198 AFEANSNVVDVHVRALREKIDRRFGV-RSIETVRGVGYRLRADAGRRAAQ 246 >gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+KA+A + + L E F+V + G D + EFD +LD+ L DI GFE Sbjct: 4 RILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R + + PV +L+ + +DK+ GL GADDY+ KPF EL+AR+ A +RR Sbjct: 64 LLRTIR-SSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I L +N DA++V V G + LT EY ++ L + + + E Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ P + V I LR+K+ + A +I+ VWG GY++ Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYIIE 231 >gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD +A I L E G G E DA+ILD+ L ++ GF Sbjct: 1 MKVLLVEDDPKVASHIANGLLGEGHECITVGDGASGFNEASSNELDAVILDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL LR +TPV +LS S +EDKV+GL++GA+DY++KPF EEL+AR+ R Sbjct: 61 SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++LI GDL+++L + V I L KE+Q++E L K +T+ M L ++ Sbjct: 121 DGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P+ +IDV I +LR+K+ A IETV G GY + + Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAFNVP-LIETVRGTGYRIAD 223 >gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D+ + ++ L E + V G + +E+ + + IILD+ + + G Sbjct: 4 IKILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPRMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++ R +R P+ +L+ S D+++G + G D+YISKPF+ + LVAR+ AI R Sbjct: 64 WQTCREIR-QSSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRS 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I G + ++ A V++ I L+ KE++++ + L++E LN++ Sbjct: 123 HAIGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + ID + KLR KL + NYI+T+WG GY A Sbjct: 183 WNYDYFGDARTIDTHVKKLRSKLGDKG---NYIKTIWGMGYKFEVEA 226 >gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20] gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA I +ML+SE++ + G ++ D ++LDL L + G E Sbjct: 4 RILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + +D V GL++GADDY++KPF +EL+AR+ +RR+ Sbjct: 64 ICRLIRSESDV-PIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ V+ I LT E++++ L+ T+E L+ ++ Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++++V + +LR K+ + + TV G GY + E+A Sbjct: 183 QHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226 >gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D+ + + L E + V GE+ +++ + + ++LD+ + I G Sbjct: 4 IKILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPRING 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV R +R P+ +L+ D++ G GAD+YISKPF+ + LVAR+ A++RR+ Sbjct: 64 FEVCREIR-QTSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRA 122 Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++ A TV + G I L+ KE+++++ + LT+E L+ Sbjct: 123 NKLGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDS 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + ID + KLR K+ +YI+TVWG GY Sbjct: 183 VWSYDYFGDARTIDTHVKKLRSKMGAKG---DYIKTVWGVGYKFE 224 >gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT] gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DDK + +I++ LK+E V+ G D + L + E I++D+ + + G + Sbjct: 6 VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS S DK+ GL GADDY++KPFN EL+AR+++ +RR Sbjct: 66 TFKIR-EKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124 Query: 123 AQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + +N + K+V V G + LT EY+++E L + E + Sbjct: 125 NNYKSNSQELKVGGIILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I ++R+K+ Y++ VWG GY ++E Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231 >gi|302530673|ref|ZP_07283015.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439568|gb|EFL11384.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 222 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L +E F V V G DG+ +++DA++LD+ L ++ G+ Sbjct: 1 MRLLIVEDELEFAETLRRGLVAEGFTVNVAHTGRDGLWSAMEHDYDAVVLDIMLPELSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A+ TPV +L+ D+ GADDY+SKPF+ L+AR+RA++RR Sbjct: 61 EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ A+TV RI LT +E+ ++E L R+ LTK L H++D Sbjct: 121 PARPAVLTAGDLQLDPAARTVHRGETRIELTAREFGLLEFLLRRQGAALTKNEILGHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +++V++ LR+K+ +A G IETV G GY L Sbjct: 181 AHYEGDENVVEVYVGYLRRKI-DAPFGTRTIETVRGVGYRLV 221 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238 >gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI K F+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 227 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L+ +F++ + G++ + + D IILDL L +I G E Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +L+ + EDKV G GADDY+ KPF+ EL+ARI+AI+RRS Sbjct: 64 VCQKIR-QDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G L ++ + V V G LT E+ ++ L T+E Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + ID I +RKKL I TV+G GY + Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 218 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ + + + L + + + G++ ++ + +D ++LD+ + ++ G V Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 + +R P+ L+ ++V GL+ GADDYI KPF+ ELVAR+ A+ R ++ Sbjct: 62 KEIR-KTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q I G + +N ++ +E G I LT KE+ ++ L ++E L ++ Sbjct: 121 QQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +R KL + NYI+TVWG GY Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217 >gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] Length = 238 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ + + ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ ID + +LR+KL + + I TVWG GY Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234 >gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] Length = 223 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + ++ L+ + V V + G + + L +D I+LD+ L I G+ Sbjct: 3 RILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGYG 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ +S ED+++GL DDYI+KPF+ L+ +I A++RRS Sbjct: 63 VCELIRKQ-SDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSNR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I G+L +N D+ T V G LT KE++++ L + LT++ L+ L Sbjct: 122 ETDEKYQIITYGNLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKL 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + +++D I LRKKL +I+T+ G GY Sbjct: 182 WRYDFYGDERVVDTHIKNLRKKLGID-----FIQTIRGVGYK 218 >gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536] gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli] gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536] Length = 239 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 234 >gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 242 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 16/241 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E F+V GE+ +E + D +ILDL L G E Sbjct: 4 KILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLMLPKKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVR-QTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + I G+L + DA VE G +I LT +E++++ ++ + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +T+E L ++ +V+ +DV + +LR+K+ + + T G GY + + Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY-FVKQQTE 241 Query: 228 E 228 E Sbjct: 242 E 242 >gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++L+ + +L+ E F V + D G + + + D ++LDL L PG E Sbjct: 3 RILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V+R +R+ PV +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VIRQIRLNSQV-PVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGE 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ G + ++++ V V+ + + KE++++E+L LT+ ++ + Sbjct: 122 GEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ + TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGYKFV 225 >gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D+ + +E +L+ E + + G++ +E +D I+LD+ L D GF Sbjct: 5 KILIIDDEPGIVKMLETILRKEGYTSISSAFTGQEAMEKISRNLYDLIVLDVMLPDTDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + P+ L+ S DK+ GL G DDYI+KPFN E+ ARI RR Sbjct: 65 RLCQEIR-RHTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRLE 123 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G ++++ A + V G + KE++++ L+ N T Sbjct: 124 QYQNAGQTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQLY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 H++ + K + + I +LRKK+ A + I + G GY + E Sbjct: 184 EHIWGYDSIGDEKTVSIHIMRLRKKIERDAKNPSLIVNIRGIGYKFIPPKQGE 236 >gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 229 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + IE LK E + VY+ G++GI + K D IILD+ + + G E Sbjct: 7 KILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R +T + L+ S ++ G GADDYI+KP LV+RI AI+RR+ Sbjct: 67 ACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + GDL ++ +A V G ++ L KE++++ LL+ + T+E L Sbjct: 127 SSTDDVSDNKVEIGDLVIDREAYLVYQNGQKVVLAKKEFELLYLLASKPGKVYTRESILK 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + IDV I KLR+KL Y+ TV G GY Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKLGE-----TYVATVKGVGYKFE 227 >gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614] gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA S++ L++E F V V G + + + +D I+LD+ L + G+ Sbjct: 1 MRVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR ++ TP+ +L+ D++ GL GADDY++KPF+ + L+ARIR++VRR Sbjct: 61 EVCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL + K V G I LT +E ++ R LTK L +++D Sbjct: 121 TERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + I++V++ +LR+K+ G + ET G GY LR Sbjct: 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCADL-ETFRGTGYRLRVPE 224 >gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 228 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 131/232 (56%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L ++ V + G +G+ L +D I+LD+ L + GF Sbjct: 1 MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R A TP+ +L+ ++ED+VRGL+ GADDY+ KPF EL+AR++A++RR R Sbjct: 61 GILAAVR-ANKDTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + V G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 120 SQEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + + +IDV + +LR KL + + TV G GYVL ++ E Sbjct: 180 MNFDSDTNVIDVAVRRLRSKL-DDPFEAKLLHTVRGMGYVLE--SRPEPARG 228 >gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3] gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3] Length = 247 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + ++ L E F V+ GE +E+ ILD+ + + G E+ Sbjct: 21 ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS +S DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRIR-EKHSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 140 NQNAVQVIEKKINIRGLEIDEVSRTVVLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247 >gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 245 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 118/230 (51%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +I+ L+ E ++V G + +++ + +I+D+ + + G Sbjct: 15 KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGMDGLS 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ ILS + DK+ GL GADDY+SKPF +EL+AR+++ +RR Sbjct: 75 ATMKIR-ESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ ++ G L+++LD K + V G + +T E++++ LL + E Sbjct: 134 LGSKAAGPEDKNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 194 IYERVWEEAAYATENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243 >gi|325679575|ref|ZP_08159151.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108732|gb|EGC02972.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 240 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + +I +L+ E ++V G D +E + I++D+ + + G Sbjct: 8 ILVVDDDRDIVAAIAKLLELEGYSVVKAYDGIDALEKLAENDIQLILIDVMMPRMDGLSA 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R K + P+ +LS S DK+ GL GADDYI+KP+N EL AR+R+ +RR Sbjct: 68 IMKIR-DKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVRSSLRRYMQL 126 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G L ++ AK + V G + LT E +++ELL + E Sbjct: 127 GDIGSINKTDVIKIGGLELDKSAKQLTVDGEPVRLTATELKILELLMENAGRVFSAEDIY 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + V I +R+K+ Y++ VWG GY + +N + Sbjct: 187 RRVWNEDAYAVENTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKNKQ 237 >gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] Length = 260 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ++ I +L SE + D G D + + + IILDL + D+ GF+ Sbjct: 27 RILVVDDDPSVRRIICRVLGSEGISTEEADGGVDAVRMAVSNPYSLIILDLMMDDMDGFQ 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+ LR I TP+ +LSG + DKV L GADDYI+KPF+ L A+++A +RRS Sbjct: 87 VIHHLRTNGILTPLFVLSGRQAEVDKVLALGIGADDYITKPFSTMVLCAKVKACLRRSSL 146 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G D + QG I L+GKE +++ +N LTK+ +++ Sbjct: 147 LSGHANELIAGPFRYICDEMRLFKQGEEIFLSGKECLLMKYFLSNQNKILTKDQIYRYVW 206 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + D + I V I +LR K+ ++ G Y++ + G GY + Sbjct: 207 N-DDFVDDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGYQFVAEEVE 253 >gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB [Pelagibaca bermudensis HTCC2601] gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. HTCC2601] Length = 229 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + L++E F V GE+ + + E D I+LD L ++ G EV Sbjct: 8 VLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R PV +LS S D+VRGL++GADDY+ KP++ EL+AR++A R Sbjct: 68 CRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRAR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + D+ ++ + V G + L E++++ + ++E L+ ++ Sbjct: 128 PAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L GG + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALGIYGGG-DPLRTVRGAGYAL 228 >gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++ L+ F V + D G +G+EL + D +ILDL L + G EV Sbjct: 5 ILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR V + + S D+V GL+ GADDY+ KPF+ ELVAR+ AI+RR R Sbjct: 65 AARLRQDSDVFIVML-TARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRRST 123 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + ++ D + V V I LT E+ ++ L+ R L++E L+ ++ Sbjct: 124 TPAVNSTLRFAHMQIDPDRREVTVGDQTIDLTTTEFDVLLALARRHGRVLSREQILDLVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++DV++ ++R+KL AG I+TV G GY + A Sbjct: 184 GNDFYGTDRVVDVYVGQVRRKLEAVAGVS-LIQTVRGVGYKFIDEA 228 >gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58] gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58] Length = 221 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L H + L+ + V + GEDG L +DA++LDLGL I G Sbjct: 1 MRLLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDGHFLGSTESYDAVVLDLGLPTIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL I T+ G GY L E + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----VITTIRGLGYSLDEPGR 221 >gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 225 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQTGYAVDLSTDGEDGHFLGSTEDYDACILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 SVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + G + ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGGVRLDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGA-----EVITTIRGLGYSLDDPA 220 >gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 234 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ LK + F V G + +++ + + DA ILD+ + + GF Sbjct: 9 RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 +L LR PV L+ +++D++ GL GADDY++KPF+ EE+V R++ I+R Sbjct: 69 LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I DL+++ ++ V G + L+ E++++ L + L+K L+H+ Sbjct: 129 PEVDDDQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ ++ LR+K+ + I+TV G GYVLR Sbjct: 189 WNYDFGGDGNVVESYVSYLRRKVDKD--EPHLIQTVRGVGYVLRTP 232 >gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] Length = 231 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ + L E + V G++ ++ + D II D+ + + G++ Sbjct: 3 HILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + A+ + P ++ D++ L GADDY++KPF+ EL R++ ++RR + Sbjct: 63 FIDAVLQLREDQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLLRRIQP 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V +++ V + + L+ KE+Q++ L K ++ Sbjct: 123 KKAGQSVLSYAPFAIDEGQHRVTLYDQPLQLSLKEFQLLALFLKNPGRVFAKSELFLKIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVL 221 + + ++V I LR KL+ AG + Y IETVWG GY L Sbjct: 183 ETDYMEDANTLNVHIHSLRDKLAKLAGQRPYPKIETVWGLGYRL 226 >gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 250 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++D++ + + L LK ENF ++ G + + L K + FD I+LD+ L DI GF Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R +TP+ ++ SS DK+ GL G DDYI+KPFN E+ ARI +RR Sbjct: 78 ELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQH 136 Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S+ + V +H T KE +++ L N T E Sbjct: 137 MTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQL 196 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + K + + I KLRKK+ YI + G GY + K++ Sbjct: 197 YEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKEQ 250 >gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 256 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 IL++ED++ L ++E L+ E + G G+E D ++LDL L DI G E Sbjct: 5 ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDISGTE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R LR S PV +L+ D+V G + GADDY++KPF+ EL+ R+RAI+RR Sbjct: 65 VCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILRRA 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ A S + GDL V++ V V G+ I LT E++++ L R T++ L+ Sbjct: 125 GTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLLSD 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +D + +LRKKL +A YIET+ G GY R++ Sbjct: 185 VWGMHAGLTTRTVDTHVTRLRKKLGDAGS---YIETLRGVGYRFRDS 228 >gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator [Burkholderia phymatum STM815] gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 225 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ ++V V + G G+ L + ++D IILD+ L + G+ Sbjct: 1 MRILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPWMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR A +TPV L+ + D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 TVVKTLR-ATRATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRSKVDDNFPV-KLIHTVRGVGYVLE 220 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + G D + + Y D ++LD+ + + G Sbjct: 10 RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R + + P+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ DL ++L + V G + LT E+ ++E+ LT+E Sbjct: 130 ARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GY LR Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALR 237 >gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 246 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 122/239 (51%), Gaps = 11/239 (4%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 M+ IL+IEDD+ ++ + L E + V + GEDG+ +++DL L Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + GFEV R +R P+ ++S S DK+ L GADDYI+KPF+ ELVAR+++ Sbjct: 69 KVDGFEVCRQVRQQSEV-PIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSH 127 Query: 116 VRRSRGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +RR + L++N + + VE G + LT KE++++ L+ + Sbjct: 128 LRRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFS 187 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 KE N ++ D +++ + V I +R+KL + + +I+TVWG GY +++ Sbjct: 188 KEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQKHEDS 246 >gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 248 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +E + E D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKE 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I DL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QVAGIPNSGLIQVADLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 DVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 232 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + ++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232 >gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + V GE+ +++ D ++LD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R P+ +L+ D+++G G D+YISKPF+ + LVARI AI+RR+R Sbjct: 65 EVVREIR-KVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTR 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + ++ A V + I L+ KE++++ + LT+E LN +++ Sbjct: 124 QQDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ + YI T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGSKGA---YIRTIWGMGYKFE 222 >gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 232 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L+ + V G + + DA+I+D+ + + G Sbjct: 3 MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR P+ IL+ +++D+V GL +GADDY+ KPF +EL+AR+RA+ RRSR Sbjct: 63 EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 LS + + V RI LT E+ ++ + L + L Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++V+I LR+K + I TV G GYVLRE Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHDC-EARLIHTVRGVGYVLRE 229 >gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL G Sbjct: 1 MRLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ ++RKKL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPP 219 >gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501] gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501] Length = 228 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L SE + VY G +G+E + IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R K + + L+ + +V G +GADDYI+KP + +++++A++RR Sbjct: 66 EACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRR 125 Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ G L +N + V +G + L KE++++ LL+ + + +E+ L Sbjct: 126 LKNQEGSGEDILKVGKLVINREEYKVVNKGEELTLPRKEFELLALLASKPDKVFKREVIL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + IDV I KLR+K+ + + +TV G GY E Sbjct: 186 DKVWGQEVVVGGRTIDVHIRKLREKIGES-----HFKTVKGVGYKFVE 228 >gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L SI +LK ++++V GE+ ++ E+D IILD+ + + GF Sbjct: 1 MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L+ LR + +L+ ++ED++ GL GADDY+ KPF EL+ARIRA+ R + Sbjct: 61 TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + I D+++NL K V + I LT KEY+++E L+ ++ L++ H++ Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + E IIDV I LR+KL + + I+T G GYV+ Sbjct: 181 DYDYDGESNIIDVLIKNLRRKL-DNNRDGSLIKTKRGLGYVI 221 >gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E + + GE+ + + + ++LDL L + G++ Sbjct: 6 RILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREMRSASQV-PIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 H + DL VNL +V GH I + KE +++ L+ N T+ Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L+H++ + + +DV I +LR+K+ + AG + TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHAGWA--LTTVWGIGYKFE 233 >gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + + +LK++ F G + +E ++DL + ++ G+E Sbjct: 3 KIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPNMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV +L+ KV+G ++G DDY++KPF+ +EL+ R++A++RR R Sbjct: 63 LCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYRI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A I G ++++ ++ +V + G + KE++++ L T T++ L ++ Sbjct: 123 EASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ G I TV G GY L Sbjct: 183 DFDGNERTLDVHIGRLRERFPAEKSGFK-ITTVRGLGYRLE 222 >gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 M+ IL+ +D+K +A + L L+ F V D G + + + IILDL L D Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 IPG EV A+R P+ +L+ ED++RGLQ GADDY++KPFN E+VAR++AI+ Sbjct: 61 IPGEEVCMAVRARSAV-PILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAIL 119 Query: 117 RRSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RR+ GDL ++ ++ V G LT EY+++ +LS ++E Sbjct: 120 RRTMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSRE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ +V+ ID + LR K+ + YI+TV+G GY Sbjct: 180 ELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228 >gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD ++A + L+ F V + G G + + +D +I+D+ L + G E Sbjct: 17 KILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLPGLDGLE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR + + PV ++S DK++G GADDYI+KPF+ ELVAR++A + Sbjct: 77 ILRRM-NEEKDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENYER 135 Query: 122 HAQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + A+ V V G ++L KE+ ++ LS N +E Sbjct: 136 LKNRFKEGPPPVKAISIRGLRIEKGARRVYVHGQEVNLAQKEFDLLLFLSEHPNHVFGRE 195 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ + Y+ETVWG GY R Sbjct: 196 EIFERVWGLDSLGDSTTVTVHIARIREKIESDPSSPQYVETVWGAGYRFR 245 >gi|260754024|ref|YP_003226917.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553387|gb|ACV76333.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 147/228 (64%), Positives = 186/228 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A SIELML + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A++ TP+ +LSG++ +E KVR L GADDY++KPF++EEL+ARI+A+VRRS+ Sbjct: 61 EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD+KTVE+ +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY Sbjct: 121 GHSQSIIKTGHLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVF+CKLRKKL+ A +NYIETVWGRGY+LRE E Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILREAEHAE 228 >gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131] gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131] Length = 220 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F + G+ G +DA++LDL L +I G Sbjct: 1 MRILLIEDDRLIGDGLKVGLTQLGFTIDWFMDGKQGQLALFDAPYDAVVLDLSLPNIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ +++ +V+GLQ GADDY+ KPF E++AR++A++RR Sbjct: 61 DILKHWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + GD+ ++ A TV QG + L GKE+ ++ L N ++ + LY+ Sbjct: 121 GQLSSKLTHGDVEMDPVAMTVTQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V I LR+KL N +I T+ G GY L ++ Sbjct: 181 WDEEVSSNSVEVHIHHLRRKLGN-----KFIRTIHGVGYRLGDD 219 >gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 251 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I++D L G Sbjct: 27 MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 87 SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 147 TPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 251 >gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] Length = 227 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC 29176] gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC 29176] Length = 238 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +++ LKS+ + VY G +G+++ + E I+D+ + + G Sbjct: 11 HVLVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEEIHLAIVDIMMPRLDGIR 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DKV GL GADDY++KPF EL+AR+ + +RR R Sbjct: 71 MTMKLR-EKYDFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYRK 129 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ V G L +N D V V G + LT EY+++ LL+ + E Sbjct: 130 FMERLAPRENIHVIGGLEINEDTVEVSVDGEPVRLTPIEYKILLLLAKNPGRVFSSEEIY 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ I V + +R+K+ Y++ VWG GY + + Sbjct: 190 ERVWQ-EKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEKQG 238 >gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 227 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+++L+ + +L+ E ++V + + G +E+ + + D I+LDL L +PG E Sbjct: 3 KILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ + DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 63 VCRAIRAKSMV-PIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + V++D V V+G + L KE++++E+L +T+E ++ Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV + +LR K+ + T+ G GY Sbjct: 182 VWGSDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGYKF 225 >gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] Length = 247 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 18 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 78 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 137 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 138 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 197 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 198 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 240 >gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1] gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1] gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 225 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K +A IEL L +E + V G G+ + D +ILDL L + G EV Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R +TP+ IL+ I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 67 ARRIR-KTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 185 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225 >gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 225 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA ++ L +E F V V G G E +FD ++LD+ L G+ Sbjct: 1 MRVLLVEDERRLAETVRRGLTAEGFVVDVEHDGLSGFEAALSGDFDVVVLDIMLPGKHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR ++ TPV +LS D GADDY+ KPF+ LVAR+RA+VRR Sbjct: 61 DIVRDLRRREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ L ++ V G + LT +EY ++E L + +TK+ L ++D Sbjct: 121 PRRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + I++V+I LR+K+ + G+N I+TV G GY L+ Sbjct: 181 THYEGDDNIVEVYIGYLRRKV-DTPFGRNSIDTVRGVGYRLK 221 >gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 248 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V G +L + F ++LDL L G Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIS 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + LR P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 75 ICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + +D Sbjct: 195 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEED 247 >gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+ +D+ + I L E++ V + GE +++ E IILD+ + + GF Sbjct: 5 KILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPKVDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R S PV +L+ D + G + GAD+YI+KPF+ + L+AR+ A++RRS Sbjct: 65 AVLKEIR-ETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRRST 123 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ G + +++DA G+ + L+ KE++++ + L++E LNH+ Sbjct: 124 DDSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + ID + KLR KL + NYI+T+WG GY +AK Sbjct: 184 WDYDYFGDARTIDTHVKKLRSKLDDKG---NYIKTIWGMGYKFEVDAK 228 >gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R] gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R] Length = 232 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F+ + G + E D ++LDL L + G +V Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKELR-SVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVT 122 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +++D+ TV V G + + KE+ ++E L LT+ Sbjct: 123 ETEAEELPLDDQILEGGRVRMDVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRGQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231 >gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 246 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L+ E + V G + + + DAI+LD+ L D+ GF Sbjct: 20 IRVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGF 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ Sbjct: 80 EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S +V GDL ++ DA V I LT E++++ L L+K L+ Sbjct: 140 MAAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + ++++++ LRKK+ AG I TV G GYVLR A+ Sbjct: 200 VWNYDFGGQSNVVELYVSYLRKKI--DAGYAPMIHTVRGAGYVLRPAAE 246 >gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 267 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 45 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 104 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 225 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 267 >gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++D+K + +E +L+ E F V G D +++C+ ++ D I+LD+ L DI G Sbjct: 4 KILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIMLPDIDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + LS + DK+ GL G DDY++KPF+ E+V RI+A +RR + Sbjct: 64 EVCRQIR-QFSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQQ 122 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S + G ++ ++ G I LTG+EY ++ L + ++KE Sbjct: 123 YQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKERL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I LR+K+ + + TV G GY L++ Sbjct: 183 YEQVWGEYSSICDNTIMVHIRHLREKIEDLPSQPQQLITVKGLGYKLKK 231 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L E F V GE+ +E+ + D I+D+ + + GFE Sbjct: 4 KVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ L+ PV +L+ +DK+RG GADDY+ KPF+ EL+AR+RA+++R Sbjct: 64 LVENLK-EFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYSV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++I ++ + D + Q IHL K+++++ L+ + ++E + ++ Sbjct: 123 NTSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I ++R+ L + G K + TV G GY + Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKVE 221 >gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 224 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I+ L+ E ++V G++ +E+ +ILD+ L + G+ V Sbjct: 5 ILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPLLDGWTV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 +R K P+ +L+ S +DK+ G + GADDY++KP + + L A+++ + R Sbjct: 65 CTNIR-EKSEVPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKRIQPN 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L ++ + V ++ I+L+ KEY ++ S K TLT++ L++++ Sbjct: 124 EKSKVQNFDGLKIDAISHEVTIEDKEIYLSPKEYDLLIYFSNNKGITLTRDKILDNVWGE 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D + +LR+KL + A + TV G GY Sbjct: 184 DYYGDLRTVDTHVKRLREKLQDKAY---LVATVRGSGYKFE 221 >gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella excrementihominis YIT 11859] gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella excrementihominis YIT 11859] Length = 227 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ LK E + V G I F +ILDLGL G Sbjct: 10 MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K TPV + + ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS Sbjct: 70 AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G L++N + V G + L+ KEY ++ L+ R L++ LY+ Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+V I LRKKLS + I+TV G GYVL Sbjct: 190 YESLIGSNAIEVHIHHLRKKLSEDS-----IKTVRGVGYVLE 226 >gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family [Spirochaeta thermophila DSM 6578] Length = 226 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + + L+ E + V T G D +E + DAIILDL L + G Sbjct: 1 MTILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60 Query: 61 EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR P+ +L+ S D V GL+ GADDYI+KPF+ L+AR++A+++R Sbjct: 61 EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + IV G+L ++ +V V+G + L+ E+ ++ L+ +++ + Sbjct: 121 THPPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQII 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +RKKL +A ++YI+TV G GY L+ Sbjct: 181 DAVKGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQP 225 >gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui] gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 241 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+G+ + + + +ILD+ + + G+ Sbjct: 7 KILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 67 VCQEIRKE-SDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYK 125 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L ++ + + V + R+ LTG E+ ++ELL + ++ Sbjct: 126 ININSSIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSI 185 Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + E + +++DV I +LR KL + + I T G GY+ + Sbjct: 186 LQEVWGYKPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 235 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ + + + LK + F V + G + +++ + + DA ILD+ + + GF Sbjct: 9 IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L LR + +PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 69 ELLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N + V G I L+ E+ ++ L L L+K L++ Sbjct: 129 AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ I+TV G GYVLR Sbjct: 189 VWHYDFGGDGNVVESYISYLRRKV--DTQDPQLIQTVRGVGYVLRTP 233 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL+I+DD+ + + L E + V G +G+ E D ++LD+ + + Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFEV R +R + PV +L+ +E++V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 119 SRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + DL ++ +++ V G R+ LT KE++++ L L++++ + Sbjct: 121 KTEQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIM 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ E +++V+I LR+K GGK I T+ G GY+LR + Sbjct: 181 DKIWGYDYSGESNVLEVYIAMLRQKTEQD-GGKRLIRTIRGAGYILRGDV 229 >gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 242 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++A+ + + L+ E F+V+ G+ + D ++LD+ L DI GF Sbjct: 19 KVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVMLPDIDGFM 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + + LR + P L+ + EDKV GL G DDY++KPF ELVAR+RAI+RR + Sbjct: 79 LCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAGA 138 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++ + + V G + LT EY+++ L LT+ L+H++ Sbjct: 139 ADSTPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLLDHVW 198 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++++ ++ LR+K+ + I TV G GYVLR Sbjct: 199 GHDFGGEARVLETYVSYLRRKIDPVP--PSLIHTVRGVGYVLR 239 >gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++A+A +E+ LK+EN+N++ G+D ++ + D ILD+ L D+ GF + Sbjct: 5 ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVDGFSI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + PV +L+ DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 65 CRQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123 Query: 123 AQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + + +++ + ++ LT E+ ++ +L + ++ E Sbjct: 124 NSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ + + V I LR+K+ ++ YI+TVWG GY + + Sbjct: 184 NEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGYKIEK 232 >gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 225 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + +E + D +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G+DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIRRESEV-PIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +LS N ++E +++ Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILSRNPNRIFSREELMDY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223 >gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 231 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I + L E FNV G + +EL + E + +I+D+ + + G Sbjct: 4 ILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEVNLMIVDVMMPGLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 64 TLKVR-ETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + G L +N + K V V G I LT EY ++ LL + + Sbjct: 123 GNLNQQGSSQVYKCGGLMINDENKEVTVDGEPIKLTPIEYNILLLLVKNAGKVFSIDQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EKIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 231 >gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD +A + L+ + V + G G++ +D II+DL L G Sbjct: 1 MKQILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E++R +R K P+ I+S S DK++GL GADDY++KPF+ ELVARI++ + R Sbjct: 61 YEIVREVR-EKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRY 119 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I L + D+ V V G + LT KEY+++ L+ N TK+ Sbjct: 120 ERLSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V I KLRKK+ G YIET+WG GY Sbjct: 180 FDRIWGEDYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGYRF 226 >gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC 43969] gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC 43969] Length = 220 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + I+ L F+V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDKLIGDGIKAGLIKMGFSVDWFTDGQQGLSALASAPYDAVVLDLSLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++++V GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 DILRTWRRNGHDEPVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G +S++ +V QG ++L KE+ ++ELL + L + + +Y+ Sbjct: 121 GQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE I+V I LRKK + +I TV G GY L E Sbjct: 181 WDDEVSSNAIEVHIHHLRKKFGSH-----FIRTVHGIGYTLGE 218 >gi|302530020|ref|ZP_07282362.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438915|gb|EFL10731.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 227 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G + + + D ++LDL L + G + Sbjct: 6 RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLPGMNGID 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 66 VCKAIRAESGV-PIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEA 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 125 EPAESLTIGDLAIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223 >gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 124/220 (56%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ++A + L+L+SE F V V G + + L + D ++LD+ L + G Sbjct: 4 RILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLDGVS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ ++S + D + GL++GADDY++KPF L+AR++A +RR Sbjct: 64 VCRLIR-EESDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L V+ L+++L A V+ G +HLT E++++ +L+ + ++E L ++ Sbjct: 123 EHEVLRVSD-LTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGY 181 Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ + + TV G GY Sbjct: 182 RQSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGYR 221 >gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5 str. 8401] gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] Length = 227 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris DP4] gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris RCH1] Length = 229 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + + L++ F V G DG+E + + ++LDL L + GF+ Sbjct: 5 RILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLMLPGMSGFD 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ A PV +L+ D++ GL+ GADDY+ KPF+ ELV RIRA+++R Sbjct: 65 VCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKRV 124 Query: 120 RGHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + + +A VEV G LT E++++ L + T++ L Sbjct: 125 TGAQEPAPRGQWNVDGLFLDEEAHRVEVDGEEALLTATEFRLLAELVRNRGRVRTRDQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ E + +D + +LR+K+ A IET+ G GY +E Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGRFAA---MIETIRGVGYRFKE 229 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F V G +E + D I+LD+ L D GF Sbjct: 18 RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGFA 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR TPV L+ ++ D++ GL G DDY++KPF+ EE++ARI AI+RR+R Sbjct: 78 VVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRARG 137 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V D+ ++ D+ V G I L+ E++++ L+K L+H+ Sbjct: 138 GAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDHV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + I++ ++ LR+K+ I T+ G GYVLR+ + Sbjct: 198 WNYDFRGDAGIVESYVSALRRKV--DNTEPRLIHTLRGVGYVLRQPRR 243 >gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] Length = 237 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+K ++ ++ L +N+ V+ G++ +E+ E D +ILDL L + G Sbjct: 4 IKILIVEDEKTISDIVKNYLIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLMLPKLSGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV I S D++ GL+ GADDY++KPF+ +ELV R++A++RR Sbjct: 64 EVLKNIRNKSKV-PVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIE 122 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L G + LT E+ +I L N T++ + Sbjct: 123 KYNIPRADIIKTNDGRLLMDLKYNIFLKDGEEVSLTKNEFSIIRTLFSNPNKIFTRDEII 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + YI+T++G GY Sbjct: 183 ELTFGLDYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227 >gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51] gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I+L +D++++ +E ++ + ++ G + + + + D +ILD+ + + GF Sbjct: 1 MKIMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAENPDLVILDVMMPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR + P+ ILS I DK G ++GADDY+ KPF+ EL RI A++RR Sbjct: 61 DVCTQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALLRRRE 120 Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I GDL + ++G R+ LT KE++++ ++ T+E Sbjct: 121 HQTGGAGEAEKESIKLGDLEILFKRYEARLKGKRVELTPKEFKILAYMAGHPGEVFTREQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L +++ E+ I VFI K+R+K+ Y++TVWG GY E Sbjct: 181 LLTYVWGEDYVGELTGIAVFIRKIREKIEEDPSKPKYLQTVWGVGYKFGE 230 >gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family protein [Oceanicaulis alexandrii HTCC2633] gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family protein [Oceanicaulis alexandrii HTCC2633] Length = 223 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A +I ML+ V + GEDG+ + + FD +I+D + G Sbjct: 1 MRILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TP +LS + ++D+V GL +G DDY+ KP+ EL AR+ A+ RR Sbjct: 61 SMISILREEGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A GDL ++L A+TV+ I L +E++++E L +T+ M L ++ Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +IDV I +LR K+ + + + TV G GY L Sbjct: 181 DYHFDPQTNVIDVHISRLRSKI-DKPFDTSMLHTVRGAGYRL 221 >gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + I++ L++ + + ++ + K ++ D I+LD+ + + G+E Sbjct: 3 KILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R + PV +L+ S DKV GL+ GADDYI KPF+ +EL+AR++A++RR+ Sbjct: 63 ILKWIRREHQT-PVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++D+ T+ + + + KE+++I L+ KN T+E L ++ Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR+KL + G IETVWG GY Sbjct: 182 GYDYPGDSRTVDVHIKRLREKLQD--GENWQIETVWGVGYKFE 222 >gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 221 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD ++ ++ + V G G EL DA I+D+ L + G Sbjct: 1 MRILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLPGLDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R L+ A + PV +L+ + EDK +G + GADDY++KPF EEL+ R++A+ RR + Sbjct: 61 ELCRRLK-ATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G L ++L V ++G +L KE++++ L+ +E + ++ Sbjct: 120 RSAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + + +DV I +LR + + A I TV G GY L N Sbjct: 180 FDFEGDERTVDVHIKRLRNRFDHPALT---IRTVRGVGYALEVNG 221 >gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta] gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta] Length = 254 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ +E L + V GE+ + L D +ILD+ + + G+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIRA++RR+ Sbjct: 76 VCQEIRKD-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A S L+++L+ + + RI LTG E+ ++ELL R ++ Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] Length = 229 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L++E F V + GE+ + L D +ILD + + G EV Sbjct: 8 VLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + PV +LS S D VRGL++GADDY+ KP+N EL+AR+R R Sbjct: 68 CRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRTR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +L+ D+ ++ + V G + L EY+++ L + +++ L+H++ Sbjct: 128 PAAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ GG + I TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIARLRKALTREGGG-DPIRTVRGAGYAL 228 >gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis H37Rv] gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 02_1987] gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 94_M4241A] gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T92] gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis 210] gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN R506] gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN V2475] gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium tuberculosis H37Rv] gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis W-148] gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] Length = 253 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246 >gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 244 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G ++ + ++ DA++LD+ L D G E Sbjct: 20 RVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGME 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+ Sbjct: 80 VLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTTV 139 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S+I GDL+++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 140 VADESSSIIAVGDLTMDEDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDRV 199 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++++I LRKK+ AG I T+ G GYVL+ Sbjct: 200 WNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTMRGVGYVLKP 242 >gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] Length = 228 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L++E F V + G++ + K D I+LD L + G E+ Sbjct: 7 ILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLPGVSGIEI 66 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L++ A + PV +LS S DKVRGL++GADDY++KP++ EL+AR+++ RR+R Sbjct: 67 CRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRRTR 126 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A D+ ++ + V G I L E++++ + +E L+ ++ Sbjct: 127 PAAVGERLEYDDIVLDAETHRVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDRVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L GG + I TV G GY L Sbjct: 187 GRDIYVDTRTVDVHIGRLRKAL-TVRGGDDPIRTVRGAGYAL 227 >gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 233 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +++ L+ + F+V GE+ +++ + DA ILD+ + + GFE Sbjct: 7 KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR PV L+ ++EDK+ GL GADDY+ KPF+ EE++ R+R I+RR + Sbjct: 67 LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL++N + V G + L+ E+ ++ L L ++K L++ Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + +++ +I LR+K+ I+TV G GYVLR+ K Sbjct: 187 VWHYDFGGDGNVVESYISYLRRKI--DTQEPQLIQTVRGVGYVLRQPRK 233 >gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] Length = 231 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ I L L + +++ + ++ + I+LD L G + Sbjct: 3 KILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKL-VEKPQLILLDWMLPGRSGIQ 61 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ + + PV +L+ S ED + GL +GADDYI+KPF+ + L+ARI A++RR Sbjct: 62 FIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAMLRRV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q+ I L ++ +A V Q + I+L+ E+++++ L T+E L+ ++ Sbjct: 122 YEQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLDCIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + +D +I +LRK L YI+TV G GY + +DE Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEQYGFD-RYIQTVRGAGYRFSPHFQDE 229 >gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] Length = 224 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+D+ + L + V V G +G+ + + Y +D I+LD+ + ++ G+ Sbjct: 1 MKILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR-IRAIVRRS 119 EV++ L + PV L+ S++ED+++GL+ GADDY+ KPF+ EL+AR A+ R + Sbjct: 61 EVMKTL--DAQNIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGA 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ GDL ++ + VE G RI LT KE+ +++L L +++ + + ++ Sbjct: 119 NVKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D + + ++DV + +LR+K+ I TV G GY Sbjct: 179 DMNFDSDTNVVDVAVRRLRQKVDEPFATP-LIHTVHGVGYR 218 >gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 223 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD A + +L +V V + GE G+ + EFDA+++D + + G Sbjct: 1 MRVLVIEDDIEAADFVRKVLSEAGHDVAVENDGEAGLSRAQSDEFDAMVVDRMMPKMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 E+L R +TP L+ + +E++V GL++G DDY+ KPF EL+AR+ A R S Sbjct: 61 EMLTTYRDTGGNTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEALGRRAS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++L A+TV +I L +E++++E L + +T+ M L ++ Sbjct: 121 SEAPTTKLQVGDLVMDLLARTVFRGEVKIDLQPREFRLLEFLMRNADQVVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ + TV G GY L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKDFEVA-LLHTVRGAGYRLQ 222 >gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 223 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ I +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I+TV G GY+L A Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPA 220 >gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K L + LK E +V G++ + L + ++D II+D+ L + G+ Sbjct: 5 RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPEYDGWT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + + +R K + P+ IL+ S DK+ G G DDY++KPF+ +ELVAR++A+ R +R Sbjct: 65 ICKRIR-EKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSNR 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ L V+ V +QG R+ LT KEY ++ + +N L++E+ L+ ++ Sbjct: 124 QLSTETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D + +LR KL I+TV G GY Sbjct: 184 YDYYGDLRTVDTHVKRLRHKLKEMGEQ---IKTVRGLGYRFE 222 >gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 253 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++A+A + L+ E + V G G+E + D +ILD+ L + GF++ Sbjct: 19 ILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGFDL 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R R +TPV LS ED+V GL++G DDY+ KPF+ E + R+ ++RR Sbjct: 79 CRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRRRGWG 138 Query: 123 AQSLI---------VTGDLSVNLDAKTVEVQGHRIHL-TGKEYQMIELLSLRKNTTLTKE 172 + G +V+ + T + R L + +E ++++LLS R+ ++++ Sbjct: 139 GEHGASAAASDTALRFGGHTVDFRSWTASLADGRTELLSERELKILQLLSSRRGEVVSRD 198 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ ++ P + +D F+ +LR+ Y TVWG GY + Sbjct: 199 DILDAVWGDDAFPSSRTVDNFVVRLRRLFEPDPARPIYFHTVWGVGYRFTPEGE 252 >gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I L ++ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ + +I+ VWG GY + + Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDSKEPKFIQNVWGVGYKIED 232 >gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 ++IL+++D+ + ++ L + + V + GE+ +++ + I+LD+ + + G Sbjct: 4 IKILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEVL A+R PV +L+ S D++ G + G D+YI+KPF+ + LVAR+ A++RR+ Sbjct: 64 FEVLEAIR-QYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRRT 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + +V G + V+ A++V + + L+ KEY+++ K L++E L+ ++ Sbjct: 123 VGEPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSREKILSSVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR K+ +YI+TVWG GY Sbjct: 183 NYDYFGDARTIDTHVKKLRAKMGERG---DYIKTVWGMGYKFE 222 >gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4] gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7] gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 241 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F I+LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQVQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ I G+ S++L + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPAQQEAEITFGEFSLDLATREMYHGDEAITLTSGEFAVLKVLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+A + ++L+ + + V + G +E D ++LDL L + G E Sbjct: 9 RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL++GADDY++KPF EELVARI+A VRRS Sbjct: 69 VCRRLRRESGV-PIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRSEE 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++D V I LT E+ ++ L+ + T+++ L ++ Sbjct: 128 PTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRDVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + + TV G GY Sbjct: 188 RHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGYR 226 >gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 220 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + + +++ L + + V GE+ + + FD ++LD+ L G+ Sbjct: 3 KILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKKDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 + R ++ S PV I++ + D+V G + GADDYI+KPF+ + +AR++ I++ Sbjct: 63 ICREIK-EYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKSN 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I G+L +N + +V + L KEY+++ KN L++E L ++ Sbjct: 122 ININNEIEIGNLKINDISHSVRKGEGDLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +I+DV I LRKK+ + YI+T+ GY Sbjct: 182 YDYTGNDRIVDVHIKNLRKKIGD-----EYIKTIRSVGYKFE 218 >gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] Length = 233 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + +I + L +E +N++ G + + + + E I+LD+ + + G Sbjct: 6 ILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPKLDGIAT 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K + PV LS S DK+ GL GADDY++KPFN EL+AR+++++RR Sbjct: 66 ITKVR-EKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRRYTIL 124 Query: 123 AQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 TG LS+N D V V G + LT E+++++LL R N + E Sbjct: 125 GNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVFSMEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V + +R+K+ Y++ VWG GY + ++ Sbjct: 185 EKVWGELSYMTDNTVAVHVRHIREKIEIDPKNPKYLKVVWGIGYKIEKH 233 >gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002] Length = 225 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E FN G +E E D ++LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ + D V GL++GADDYI+KPF +EL+AR+RA +RR+ Sbjct: 64 ICRLIR-QNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I DL++++ V I LT E+ ++ L+ + T+E L ++ Sbjct: 123 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R+ + ++++V + +LR K+ + TV G GY Sbjct: 183 RNASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme DSM 15981] gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme DSM 15981] Length = 238 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 12/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDDK + +E+ L+S+ + V+ G +G++L + E I+D+ + + G Sbjct: 7 RILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEVQLAIVDVMMPRMDGIT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR PV LS S DK+ GL GADDYI+KPF EL+AR+ + +RR R Sbjct: 67 MVVKLR-EMYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYRR 125 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + G L +N D V V + LT EY+++ LL Sbjct: 126 FMERLNRQQPENSKIHRLGGLEINEDTVEVTVDDKPVKLTPIEYKILLLLVQNPGRVFPA 185 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++ R + V I +R+K+ Y++ VWG GY + + A Sbjct: 186 DEIYERVWNERA-INTDTVMVHIRNIREKIEVNPKEPKYVKVVWGVGYKIEKQA 238 >gi|160900531|ref|YP_001566113.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366115|gb|ABX37728.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 223 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + L+ V G L + EFDA +LDLGL G Sbjct: 1 MRILVVEDEPTLCGQLVQALQQAGHTVETAADGATAQYLGEVEEFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 TVLRAWRAQGRVMPVMILTARGAWHEKVAGMDAGADDYLAKPFHMEELMARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASAQWQCGPIVLDSRHARVSVAGQPLTLTSHEFKVLALLMQRVGQVISRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ +LRKKL + IETV G GY L E A Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVEGAP 221 >gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis] gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis] Length = 235 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IEL LK++ + VY G D ++ + + D ILD+ L D+ GF Sbjct: 4 KILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVMLPDVDGFH 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ AR++ +RR Sbjct: 64 ICQKIR-ERYFYPIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRRYVC 122 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + L +N + + G + LT E+ ++ L + ++ Sbjct: 123 YNNAADIEKENVLVTEYDINGLVINKNTHKCTLYGKAVTLTPIEFSVLWYLCENRGKVIS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + + I +LR+KL A +I+TVWG GY + E Sbjct: 183 SEELFENVWGEKFLDNNNTVMAHIGRLREKLKEPARNPKFIKTVWGVGYTIEE 235 >gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614] gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614] Length = 248 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F ++ G+ +E + Y D ++LDL L G + Sbjct: 27 RILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRPDLVLLDLMLPGKDGID 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ D V GL+SGADDY+ KPF +ELVARIRA VRR Sbjct: 87 VCKEIRAESGV-PIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRFDA 145 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 AQ + GDL++++ V G RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 146 PAQETLTIGDLTIDVAGHAVTRAGERISLTPLEFDLLVCLARKPWQVFTREVLLEQVWGY 205 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + TV G GY Sbjct: 206 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 244 >gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 222 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L I + L+ + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A ++ G + LT EY+M+ L K + +++ + HLYD Sbjct: 121 GHASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLGVD-----LIETVRGMGYRMREP 219 >gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] Length = 232 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+G+++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E K++DV + +LR+K+ +I TVWG+GYV +E+ Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230 >gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A TPV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L K +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKASVDGKPLKLTSHEYRLLAYLMHHKGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 255 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ G + TV G GY+L+ ++ Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGP-LLHTVRGAGYMLKAGRAKQSA 250 >gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] Length = 238 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 119/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L+ EN+ + G+ + + ++ I+LDL + G E Sbjct: 6 RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR++ Sbjct: 66 VCRELR-EYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L ++ +A V V G I LT KEY ++ L+ + +E Sbjct: 125 SSEEATGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222 L ++ +++ ID + +LR+KL + + I TVWG GY Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234 >gi|86739863|ref|YP_480263.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566725|gb|ABD10534.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 235 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 12/235 (5%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 ++DD A+ S+E L+ E + V G D +++ D ++LD+ + + G E R Sbjct: 2 VDDDAAVRESLERSLRFEGYEVATAVDGADALDVIGRERPDIVVLDVMMPRVDGLETCRR 61 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR PV +L+ + D+V GL GADDY+ KPF EEL AR+RA++RR+ A+ Sbjct: 62 LRAQGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRAALAARV 121 Query: 126 LI-----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + ++ ++ V + LT E++++EL L++ M Sbjct: 122 RAAGSRGIPDSTLRYGGVCLDQVSRQVTRGDRELILTKTEFELLELFLAHPRQVLSRSMI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++ P ++VF+ LR+KL G + TV G GYVLRE + D Sbjct: 182 MERVWGYDFGPTSNSLEVFVSYLRRKLEAN-GEPRLLHTVRGVGYVLREPSGDRA 235 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +A I + L+ E + V G + K + DA++LD+ L D G E Sbjct: 12 RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R S PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR Sbjct: 72 VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAGA 131 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A S +V GDL ++ D++ V G + LT E++++ L L+K L+ + Sbjct: 132 QQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDRV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 192 WNYDFGGQANVVELYISYLRKKI--DAGHEPMIHTMRGAGYVLKP 234 >gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 226 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+ + ++ L E + V+ G + ++ + I+LD+ + + G + Sbjct: 8 RILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMDGAQ 67 Query: 62 VLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 RA+R LS + E ++ G GADDY++KP + LV+R++AI++R Sbjct: 68 TCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKRI 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ + TV G I L KE+ +++LL ++E ++ Sbjct: 128 DAGKAPAPAEEGVAMDRERYTVTRDGREISLPRKEFALLDLLYSSPGKLFSREEIYARIW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IDV I KLR+K+ + I TV G GY Sbjct: 188 GSEVVVGDRTIDVHIRKLRQKIGD-----EKIVTVKGVGYKYEP 226 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL+I+DD+ + + L E + V G +G+ E D ++LD+ + + Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFEV R +R + PV +L+ +E++V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120 Query: 119 SRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + DL ++ +++ V G R+ LT KE++++ L L++++ + Sbjct: 121 KTEQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIM 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ E +++V+I LR+K GGK I T+ G GY+LR + Sbjct: 181 DKIWGYDYSGESNVLEVYIAMLRQKTEQD-GGKRLIRTIRGAGYILRGDV 229 >gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 233 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+K + ++ L E + V + GE ++ D IILD+ L + GFE Sbjct: 5 HILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFE 64 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V P+ LS S +EDKV+GL GA DY++KPF+ EL +R++A+ RR Sbjct: 65 VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRI 124 Query: 120 RGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L+++L V + I LT KE+ ++ L + +++ L Sbjct: 125 NQNPYHKKETLRYGKLTMDLKGYRVLINKEEIDLTNKEFNLLAYLIDKLGKVCSRDELLA 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + ++ +DV I LRKK + I+TV G GY L +N Sbjct: 185 NVWGYENVSGIRTVDVHIRMLRKKFTQYNIESLLIKTVQGVGYKLVKN 232 >gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] Length = 235 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED++ L S+ +LK + ++V G++ ++ +D IILD+ + + GF Sbjct: 7 MKLLLVEDERDLNASLTKLLKKQQYSVDSAFDGQEALDFLAVGSYDLIILDIMMPHMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L +R+ + PV +L+ ++ DK+RGL GADDY+ KPF EEL+AR+R ++RR Sbjct: 67 EFLERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPL 126 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + G + + L K V G ++LT KEY+++E L +N L++E +H++ Sbjct: 127 RHILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D E E IDV I +R+KL ++ G + I+T G GYV Sbjct: 187 DYEQEAESNTIDVLIKNIRRKL-DSEGQPSLIQTKRGLGYV 226 >gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 325 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G + + ++ DA++LD+ L D+ G Sbjct: 84 RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGLA 143 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EEL AR+R ++RR G Sbjct: 144 VLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVHG 203 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL+++ D++ V G IHLT E++++ L L+K L+ + Sbjct: 204 TVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 263 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++++++ LRKK+ AG + I T+ G GYVLR Sbjct: 264 WNYDFGGQANVVELYVSYLRKKI--DAGRQPMIHTMRGAGYVLRP 306 >gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L +NF V GE+ ++L IILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV R +R P+ +L+ D++ G + G D+YISKPF+ + LVAR+ AI R Sbjct: 65 EVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + ++ G + V+ A V V+G I L+ KE++++ + L++E LN ++ Sbjct: 124 QTNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL YI+TVWG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTVWGMGYKFE 223 >gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus UQM 2246] Length = 236 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ L ++ E + V V+ G +G+ + D ++LDL L + G + Sbjct: 5 RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNLPGMNGLD 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR P+ +++ + D+V G GADDY+ KPFN + L+ +++A++RR+ Sbjct: 65 VCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRRA 124 Query: 120 RGHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G ++ VT + ++ V + + LT E++++E L + +++ + Sbjct: 125 QGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQPGRAFSRKQLMEA 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + IDV I LR+KL+ A G + IETV GY RE+ D Sbjct: 185 AIGDNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGYRFREDKLD 234 >gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 221 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V + GEDG L +DA ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R K + PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ ++RKKL I T+ G GY L + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----IITTIRGLGYQLDDP 219 >gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 227 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +I+ L + V V GE+G+ + Y++D I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR IS P+ IL+ S +DKV GL +GADDY+SKPF EELVARI A++RRS Sbjct: 61 SLISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + ++ I+L+G EY++ E L L + +K + H+YD Sbjct: 121 GKASPVIQNGPFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +I+VFI +LRKKL IET+ G+GY LR+ A D Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYQLIETLRGQGYRLRQLAPD 226 >gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3] gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 241 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F I+LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQIQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ I G+ S++L + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPAQQEAEISFGEFSLDLATREMYHGNEAIALTSGEFAVLKVLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|300789808|ref|YP_003770099.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799322|gb|ADJ49697.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 227 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G + + + D ++LDL L + G + Sbjct: 6 RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLPGMNGID 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 66 VCKAIRAESGV-PIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEA 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ V +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 125 EPAESLTIGDLAIDVPGHEVTREGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223 >gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 235 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + + L L+ +N +Y G D + + D I+D+ + I G+ Sbjct: 3 KILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIMMPKIDGYH 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R K PV +LS S K+ GL+ GADDYI+KPFN E+VAR++A +RR Sbjct: 63 LVKKIR-EKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + G+L +N T+ G I LT EY++I L TK+ Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D + +I V I LR K+ N + YI+T+ G GY N K Sbjct: 182 QIFEYVWDEPFYGDDNVIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNYNIK 235 >gi|199597340|ref|ZP_03210771.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258539273|ref|YP_003173772.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591856|gb|EDY99931.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257150949|emb|CAR89921.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 243 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 120/245 (48%), Gaps = 19/245 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+ ++A + + + E + V GE+G+ K FD I LDL L + Sbjct: 1 MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117 G +V + +R + P+ +L+ + D+V GL+ GADDY++KPF+ L+ARI+A+ R Sbjct: 61 GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120 Query: 118 -------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163 + T ++ + + G +I LT KE+ ++ LS Sbjct: 121 AEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E L ++D + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 SPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 238 Query: 224 NAKDE 228 + D+ Sbjct: 239 SGLDQ 243 >gi|262203510|ref|YP_003274718.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086857|gb|ACY22825.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 225 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++L+ E F +V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDAALAEMLTIVLRGEGFEPFVVGDGTQALTAVREIRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARVRARLRRTDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ G + +++ A V G I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAELLSIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221 >gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD +A + L++ ++V V G+ G++ E+D +ILDL L + G Sbjct: 1 MKHILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + P+ ++S DK+RGL GADD+ISKPF+ ELVAR++A + R Sbjct: 61 FEICKQVR-KVKNIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARY 119 Query: 120 RG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ I + ++ A+ V + G+ + T KEY ++ L N +K Sbjct: 120 DRLVSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSK 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ + YIETVWG GY Sbjct: 180 TELFEKIWGLDSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGYRF 229 >gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Escherichia coli F11] gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Escherichia coli F11] gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146] gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS 60-1] Length = 239 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 234 >gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 225 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ ++ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225 >gi|86610276|ref|YP_479038.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558818|gb|ABD03775.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 247 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61 +L+++D+ A+ ++ L L+ + + V G +E+ D +ILDL L + G + Sbjct: 24 LLVVDDEDAIRETVALALEEQGYQVLQAADGRQALEMVHTVERLDLMILDLMLPSLNGLD 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ SS D+V GL+ GADDY++KPF EL+AR R+++RR + Sbjct: 84 LCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRQQL 143 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S GDL + V V+G + + KE++++EL T+E L + Sbjct: 144 AQASDATVLRYGDLCMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLERI 203 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + K +DV I LR+KL Y+ TV G GY Sbjct: 204 WGSDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 246 >gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii KLE1255] gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii KLE1255] Length = 227 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ++ + L+ + V+ G ++ + + D I+LD+ L G Sbjct: 1 MKILLVEDDLEISKLLAEFLQENGYEVFCQYDGLHVLDCLRENKIDLILLDIMLPYRNGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A+R + P+ ++S + ++KV L+ GADDYI+KPF+ EE++ARI + +RR + Sbjct: 61 TVLTAVR-ECSTVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLRRVQ 119 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++L+ T +QG + LT KE+ ++ELL + +K + Sbjct: 120 FQKDNPTHLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLFQSV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E ++V I LR KL K++I+TVWG GY L Sbjct: 180 WNAEYISEDNTLNVHISNLRNKLKAVCPDKDFIDTVWGIGYRL 222 >gi|310816018|ref|YP_003963982.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium vulgare Y25] gi|308754753|gb|ADO42682.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium vulgare Y25] Length = 238 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 151/225 (67%), Positives = 183/225 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIE+ML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIEMMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMTGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+A++ TP+ ILSG + K++G GADDY++KPF +EELVARI AI+RRS+ Sbjct: 61 DVLRQLRLARVDTPILILSGSDDTDSKLKGFGFGADDYMTKPFQREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLD KTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVINTGRIAVNLDTKTVDVEGAPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSVATGGDNHIETVWGRGYVLRDPE 225 >gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 227 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ +++ V+V G + +E K D I+LD+ + G+E Sbjct: 4 KILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN-PDLILLDVMMPGKNGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 V R +R ++ P+ L+ S ED + GL G DDYISKPF+ +L ARI A R Sbjct: 63 VCREIR-DIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHLRRDQR 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +L+++L +T+ G I LT KE+ +IELL++ +KE Sbjct: 122 SFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKEQIYEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + + I K+R KL + YI TVWG GY + Sbjct: 182 IWGYDAEGDSATVAEHIKKIRYKLKKYDKDREYISTVWGVGYKWEK 227 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR L+ I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 75 VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 239 >gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 226 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA I +ML+SE++ + G ++ D ++LDL L + G E Sbjct: 4 RILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + +D V GL++GADDY++KPF +EL+AR+ +RR+ Sbjct: 64 ICRLIRSESDV-PIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ V+ I LT E++++ L+ T+E L+ ++ Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++++V + +LR K+ + + TV G GY + E+A Sbjct: 183 QHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226 >gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 218 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A + L++ + D G D ++ E D ++LD+GL I GFE Sbjct: 3 RILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +L+ +S D V GL +GA+DY++KPF +EL+AR+R+ +R Sbjct: 63 VLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPVT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GD+++++ + + G + L+ +E+ + E L++E L+ ++ Sbjct: 123 ANTISISHGDVTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWGM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P ++DV++ LR K A I TV G GY Sbjct: 183 DFDPGSNVVDVYVRYLRGKFGAA-----RIATVRGAGYRWE 218 >gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 248 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ + + L+ E + VY G +G +L ++ D I+LDL + G+E Sbjct: 12 RILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKDGWE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I++R Sbjct: 72 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I DL + + V V +++ LT KE++++ +++ ++ Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++D + + V + +LR+KL +I TVWG GY N +E Sbjct: 191 LELIWDFEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPNGGNEITR 247 >gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H] gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 226 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRILL+EDD + + L+ V D G+DG+ L +D +ILD L I G Sbjct: 1 MRILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR K +TPV +LS ++ ++++V GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRG 120 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + GDL ++L ++TV+ G +I L +E++++E L +T+ M L Sbjct: 121 RPESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLER 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P+ +IDV + +LR+K+ + K I T+ GY+LR + Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKV-DKPFDKPMIHTIRNAGYILRAD 226 >gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 234 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD + S+ L+ F V+ EDG+ L K D ++LD+ L + G + Sbjct: 5 ILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINLPGMDGLDA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR R + PV ++ D+V GL+ GADDYI+KPF+ L+ARI+A++RR Sbjct: 65 LRRFREEVGA-PVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRVSGG 123 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ G+L ++ A TV G + L+ +E+ ++ L+L + + L Sbjct: 124 EERKPAEPQPLLIGELRIDPLAHTVHRAGKPVDLSPREFDLLYTLALEAGKVVPADELLA 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E +++ V I LR+KL + +YI TV G GY L Sbjct: 184 RVWGAEFVGEPQVLYVHIRWLREKLEDDPQNPHYILTVRGVGYKLV 229 >gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 227 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 225 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED++A+ +E KS+ F + + GE+G+ L Y++D I+D+GL + G Sbjct: 1 MKLLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + P+ IL+ +DKV GL++GADDY+ KPF+ EEL AR A++RRS Sbjct: 61 EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +V G +++N K+V + G + LT EY +E L+L ++K + HLY Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +I+VFI +LRKKL I+TV G GY A Sbjct: 181 QDFERDSNVIEVFIGRLRKKLDPDGDL-KPIKTVRGLGYRFAPEA 224 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L E +NV G G+EL + FD I+LD+ L + G EV Sbjct: 9 ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + P+ +L+ S+ DKV GL SGA+DYI+KPF EEL+ARIR +R + Sbjct: 69 LRRIR-RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 127 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + L ++ D +TV ++G + LT +E+ ++ L K L++E L +++ Sbjct: 128 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +DV+I LR K+ +I TV G GYV++++ Sbjct: 188 DFAGDTNAVDVYIRFLRGKIDEVF-NLKFIHTVRGVGYVIKDD 229 >gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3] gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 226 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L+ F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR++ + R + Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S LS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDYETKLIQTVRGVGYMLE 222 >gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O111:H- str. 11128] gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O111:H- str. 11128] gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180] Length = 227 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD + + L E + V+V + + + FD I+LDL L G Sbjct: 8 KLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLMLPGEDGLS 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR +K TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 68 ICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQPS 127 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V G S++L + + G I LT E+ M++ L L+++ Sbjct: 128 PELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLSRDR 187 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +DV I +LRK + A YI+TVWG GYV + + Sbjct: 188 LAELARGRDYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVFVPDNAE 241 >gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074] gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074] gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LD L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIRAESGV-PIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221 >gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + H IE+ L + F + + G + + + D +ILD+ + GFEV Sbjct: 4 ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R P+ LS DKV+ LQ G DDYI KPF+ EL+AR+ A++RR+ Sbjct: 64 CSRIRGKSNV-PIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTGGL 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G ++++ A+ V V G ++ LT KEY+++ KN L++E L +++ Sbjct: 123 KSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYIWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +D I LR KL G +YI+TVWG GY ++ Sbjct: 183 IDYTGSLRTVDTHIKTLRMKL----GVGDYIQTVWGVGYKFEVPSE 224 >gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 232 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L +E F V G + L + D +ILD+ L + G EV Sbjct: 6 ILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVMLPGLDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R L V +L+ + DK+ GL GADDY++KPF+ ELVAR++AI+RR+R Sbjct: 66 CRRLHQETAVY-VLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTRAP 124 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + ++ LS++ + + V+ +I LT +E+ ++ L+ T+E L Sbjct: 125 AGKTNERPSLIFDSLSIDPERREVKRGELQIELTPREFDLLYALASYPGRVFTREELLQR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++DV + LR+KL + G +Y++TV G GY Sbjct: 185 VWGADFAGIDRVVDVHVGTLRRKLEDD-GDASYVQTVRGVGYKFV 228 >gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 249 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+ A+ + L++E + V V G G+E + E D I+LD+ L + G + Sbjct: 11 HVLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIMLPGLDGLQ 70 Query: 62 VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + P+ +L+ + +D++ GL SGADDY+ KPF+ +ELV R+ +++RRS Sbjct: 71 ICERLRREDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRRSV 130 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ GDL +N ++ + LT +E+ ++ +++ LN Sbjct: 131 IEPALPVAEVVREGDLQLNPVSRVAVRGRQPLSLTSREFDLLMFFLRHPGRVFSRDELLN 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ + V + +LR K+ + I TV+GRGY Sbjct: 191 RVWGWDF-GDLSTVTVHVKRLRHKIEDIPADPRRIVTVYGRGYRWDPQ 237 >gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 3 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR R Sbjct: 62 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVR 121 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + V V G I LT +E+ + +L ++ L Sbjct: 122 KEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ +I+T++G GY L Sbjct: 182 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EHIKTIYGVGYKL 223 >gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115] Length = 234 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K +A IEL L +E + V G G+ + D +ILDL L + G EV Sbjct: 16 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R +TP+ IL+ I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 76 ARRIR-KTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 135 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PE 193 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 194 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 234 >gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195] gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 227 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED++ +A I L++++FNV G G + D IILD+ L G Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR+LR + TP+ +L+ + + D+V+GL GADDY++KPF EEL ARI+A++RR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ G L ++ +++ QG + LT +E+ ++E L N LT+ L H++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGGKNYIETVWGRGYVL 221 +P ++DV I ++R K L A IE++ G GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >gi|116749438|ref|YP_846125.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698502|gb|ABK17690.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 223 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 135/222 (60%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K +A I L+ E + V V GE G+++ D IILD+ L + G Sbjct: 1 MRLLVVEDEKKVASFIRKGLEEEGYAVDVALDGEVGLQMAMDRVHDLIILDIQLPRLSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR+LR +ISTPV +L+ ++IEDKV GL +GADDY++KPF+ ELVAR+RA++RR Sbjct: 61 ELLRSLRAKRISTPVLLLTVRATIEDKVLGLDAGADDYLTKPFSFRELVARVRALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q+ + DL+++ TV +I LT KE+ +++ + LT+ M H++D Sbjct: 121 ESSQTELRVADLTLDPVRHTVSRGSEKIELTAKEFALLDYFMRNPDRVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +IDV++ LR+K+ + I TV G GY+L+ Sbjct: 181 YDFDSMTNVIDVYVNYLRRKIDSD-REPKLIHTVRGVGYMLK 221 >gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + I+ L F+V G++G+ +DA++LDL L + G Sbjct: 1 MRILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ G + + + V + G + L +E ++EL + LT+ LY Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++V I LRKKL + +I T+ G GY L E Sbjct: 181 WDEDVSSNAVEVHIHHLRKKLGS-----QFIRTIHGVGYTLGEPV 220 >gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51] gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++A+A +E+ LK+EN+N++ G+D ++ + + D ILD+ L D+ GF + Sbjct: 5 ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVDGFSI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + PV +L+ DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 65 CRQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123 Query: 123 AQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + ++D + ++ LT E+ ++ +L + ++ E Sbjct: 124 NSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + V I LR+K+ ++A YI+TVWG GY + + Sbjct: 184 SEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGYKIEK 232 >gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1] gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1] Length = 229 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + ++ L+ E + V + G +++ + D I+LD+ + G Sbjct: 7 IKVLVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMPGQDGV 66 Query: 61 EVLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R + + L+ +V GADDYI+KP L++RI A+ RR Sbjct: 67 ETCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRR 126 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q I DL+++ + T++ G I L KE++++ L+ N +++ L Sbjct: 127 ELKKEQEQVQIKIKDLTIDRGSYTIDKSGKTITLPKKEFELLYFLAKNPNMVFSRDELLQ 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +DV I K+R+K+ + YI TV G GY Sbjct: 187 NIWGADVFVLARTVDVHIRKVREKIGDD-----YITTVKGVGYKF 226 >gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ LA + +L+ E + V + + G + D ++LDL L +PG E Sbjct: 3 RVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLMLPGMPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR++ P+ +L+ S D V GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRQLRLSSHV-PIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTP 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L G +++++D TV V G+ I++ KE++++E+L LT+ ++ Sbjct: 122 DDADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV I ++R ++ + + TV G GY Sbjct: 182 VWGTDYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGYRFE 226 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 14/237 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ F+V G D + L + + D ++LD+ L D+ GF V Sbjct: 14 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A PV L+ DK+ GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 74 TRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHAL 133 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ D V G I L+ E++++ L L N L+K L+H++ Sbjct: 134 DEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDHVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN-----------YIETVWGRGYVLRENA 225 + + I++ +I LR+K+ A I+T G GY+LR Sbjct: 194 EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYMLRTPE 250 >gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A IE+ L +E ++V + G +E+ + E D +ILD+ L + G Sbjct: 4 RILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLDGIS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R +TP+ +LS DK+ GL +GADDY+ KPFN ELVAR+++++RRS Sbjct: 64 VCMKIR-ESKTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122 Query: 122 H----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +I L+++ + T V G+ + LT E+ ++ LL+ Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ + + V I +LR KL G+ I TVWG GY L Sbjct: 183 EEIFELIWKDKYLDSSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKLE 233 >gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ] gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ] Length = 267 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ L ++ L + + V D G+ L FD ++LD+ + G Sbjct: 30 RILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVMMPGEDGLS 89 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL ARI A++RR R Sbjct: 90 LCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQRM 149 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I G S++L + + G I LT E+ +++ L+ L ++ Sbjct: 150 LGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRDR 209 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E + IDV + +LR+ + + YI+TVWG GYVL + E Sbjct: 210 LIELSRGRDHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVLVPDGGAE 264 >gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli] gi|47716815|gb|AAT37590.1| SilR [Escherichia coli] Length = 226 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L+ F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ N G I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGT-KLIQTVRGVGYMLE 222 >gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+K + ++ L+ E + V+V G +G+E+ + D I++D+ + + G E Sbjct: 9 ILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGIEA 68 Query: 63 LRALRVAKISTPV--CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + +R L+ + +V G ++GADDYI+KP LV+++ A++RR Sbjct: 69 CQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRRAG 128 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I T ++VN + V + I L KE+++IELL+ R T+E L + Sbjct: 129 RMNGGEPEIKTSSITVNREKFLVYMNEEEIQLPKKEFELIELLASRPGKVFTREQILTTV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDV I KLR+KL + YI T+ G GY E Sbjct: 189 WGDETIVGERTIDVHIRKLREKLGES-----YIRTIKGVGYTFSE 228 >gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1] gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + ++L L+S + V + D D I D I D+ L + G Sbjct: 4 RIYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVMLPQMDGIT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ILS S DK+ GL SG+DDY++KPF EL AR+R ++RR + Sbjct: 64 AVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRRVQP 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++S+ LS++ V+ I LT KEYQ++ L K + ++ LN+++ Sbjct: 124 KSKSIQTP-TLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERVVERDELLNNIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +DV I LRKKL + G+ YI+TV GY E Sbjct: 183 DFIGESRALDVHIRSLRKKLDDN--GEKYIKTVRSVGYRFVE 222 >gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium sticklandii DSM 519] gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium sticklandii] Length = 230 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ ++ + L+ E ++ + + G +G+ L + D +I D+ + I G E Sbjct: 4 KILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVMMPTIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R+ PV +L+ D+++G ++GADDY++KPF+ +ELV R+ +++R+ Sbjct: 64 VLREIRL-ISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTYK 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G+L ++L+ + + I +T KE+Q+I L++E + + Sbjct: 123 TIENKQVLIEGELKLDLNKQKLYKNEVEIDITSKEFQIIYAFFKNPRQILSREQLIELAF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + IDV I K+R K+ Y++T +G GY+ + +D Sbjct: 183 SNDFEGFDRTIDVHIKKIRHKIEEDTKNPKYLKTKYGAGYIFGGSDED 230 >gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 245 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++A I++ LK + + G + ++ + FD +ILD+ + + GFE Sbjct: 20 RILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ IL+ ED V G + GADDYI+KPF EL+AR+ +I+RR G Sbjct: 80 ACERIRAQSDV-PIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEG 138 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G+L ++ V V+G ++LT E++++ L+ +E Sbjct: 139 YSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV + +LR+K+ I TV G GY L E Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKLAE 244 >gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 238 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L L+ E V G+DG+ + +DA++LDL L + G E Sbjct: 6 RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQS L ++ A+ + G R+ LT +E+ ++ + + ++ L Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + E ++ I +LR K+ I TVWGRGY E + E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGESE 238 >gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 238 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L L+ E V G+DG+ + +DA++LDL L + G E Sbjct: 6 RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQS L ++ A+ + G R+ LT +E+ ++ + + ++ L Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + E ++ I +LR K+ I TVWGRGY E + E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGEGE 238 >gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E F ++ D GE +E K + D ++LDL L I G EV Sbjct: 6 ILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGIDGLEV 65 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 R + + P+ +L+ D VRGL+ GADDY++KPF+ ++AR+RA++RR+ Sbjct: 66 ARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMRRNA 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ + V V G +I LT E+ ++ L+ R T+ ++ Sbjct: 126 AEPDDGIQAREVHGIGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQIVSA 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I LRKKL + IETV G GY L+E Sbjct: 186 VRGEGFAVTDRSVDVQIVGLRKKLGASG---KVIETVRGVGYRLKE 228 >gi|118467592|ref|YP_886240.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str. MC2 155] gi|118168879|gb|ABK69775.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGSQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GD+ +++ A V QG +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|56962941|ref|YP_174668.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909180|dbj|BAD63707.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 231 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+EDD ++ ++ L++E + V GE+ L D ++LDL L + G Sbjct: 1 MKQILLVEDDPEISDLVKAHLENEGYRVLTAADGEEAARLFANGGVDLVLLDLMLPKMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ +RV S P+ ILS S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 61 MTLLKQIRV-HSSVPILILSAKGSDLDKALGLGFGADDYIAKPFSLIELTARVQAAIRRA 119 Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++ G + +++DA G + LT KE+Q++ + TKE Sbjct: 120 TDYTVAEAKEERVLQRGGIRLDVDAFMAYKNGQAVKLTAKEFQLLHVFMENPKRVFTKEQ 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ E +I+V I +LR+K+ IETVWG GY L Sbjct: 180 LYQQIWNEPYLGEENVINVHIRRLREKIETNPSKPEIIETVWGIGYKL 227 >gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E + + GE + ++ + ++LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + PV +LS + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR Sbjct: 66 VCREIRAKSGT-PVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + DL VN+ V G + + KE +++ LS N T+E Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L++++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 QLLDNIWGYEYIGDTRTVDVHIKRLREKIHDN--QFWSISTVWGIGYKFE 232 >gi|218294733|ref|ZP_03495587.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244641|gb|EED11165.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 RILL+EDD + + L+ E V+ G + + + + D ++LD GL D+ G Sbjct: 3 RILLVEDDPQVGELVRRYLEKEGMEVFWARSGGEALGRVFEGERPDLVVLDRGLPDMEGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV +L+G + + +V GL GADDY+ KPF+ +EL+ARI+A++RR+ Sbjct: 63 EVLKELRELDPLLPVLLLTGRADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRAG 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++L+A+ ++G + L+ E ++ L T+E L ++ Sbjct: 123 KEGRRRF--GPLELDLEARQAFLEGEPLKLSPTEMNLLLTLVQAPGRVYTREELLERVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++D +I LRKKL + A +IETV G GY Sbjct: 181 PDFPGSERVVDAYIRLLRKKLKDDAQAPRFIETVVGMGYRF 221 >gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 233 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L++ED+ +L + L+ E + V GE+ + L + D +ILD L + Sbjct: 1 MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLS 60 Query: 59 GFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI- 115 G EV R LR + P+ +L+ D++RGL +GADDY+SKPF+ EL+AR++A+ Sbjct: 61 GIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALL 120 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R A+ + D+ ++L A V G IHL E+++++ L ++E L Sbjct: 121 RRAQPTSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ E + +DV I +LRK L+ A + I TV GY L N Sbjct: 181 NAVWGPDIYVEPRTVDVHIRRLRKALNGEAST-DLIRTVRAAGYALDTN 228 >gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 121/223 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ +A + LK ++ V + G +G E + +D I+LDL L + G Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + + + +L+ + +K+ GL +GADDY+ KPF+ EEL ARIRA+ RRS+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q +++ GDL ++ V + LT KEY ++E LT+ L+ L++ Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I LRKKL +++IETV+G GY L Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCP 223 >gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L ++ L+ E F V G DG+ L + E+ AI+LD+ L + G+ Sbjct: 1 MRILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR A + TP+ +L+ D+ GL GADDY++KPF+ L+AR+RA+VRR Sbjct: 61 QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL + A I LT KE+ ++E L+ R ++K ++ ++D Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +++V+I LR+K+ + G+ I T+ G GY+L + Sbjct: 181 TAYEGGANLVEVYIRTLRRKI-DVPYGRQAIRTIRGAGYLLARDG 224 >gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 235 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD+A+A+ ++ L+ E + V + G++G+E K Y+F ++D+ L ++ GF Sbjct: 4 KLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ ILS + DKV+GL+ GADDYI+KPF+ E+ AR+ A +RR R Sbjct: 64 LCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYRK 123 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++LI G L + K V + G +T KE+++++L++ N +KE Sbjct: 124 MDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEELY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +H++D D + V I +LR+K+ +++ +I+TVWG GY Sbjct: 184 HHVWDSIDLDGNNTVTVHIKELREKIGDSSKNPIFIQTVWGTGYKF 229 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L+++N+ V T GE+ + L + Y +D I+DLGL + G Sbjct: 1 MKLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R P+ IL+ +DKV GL++GADDY+ KPF+ EEL AR+ A++RR+ Sbjct: 61 EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH++ ++ G + ++ + V + LT EY+ E L L T++K HLY Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + +++VFI +LR+KL I TV G GY A D + E Sbjct: 181 QDFDRDSNVLEVFIRRLRQKLDPDQDL-QPITTVRGLGYRFALTA-DSSSE 229 >gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 219 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+L++ED+ +LA +++ L ++ F V + + L FD ++ D+ L + P Sbjct: 1 MRLLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEA 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFE+ +ALR + P+ L+ ++ D+VRGL+ DDY+ KPF ELVAR++A+ RR Sbjct: 61 GFELAQALRESGFHQPILFLTAREALPDRVRGLEW-GDDYLPKPFALAELVARLKALGRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q L ++ + + L+ + V QG + LT KEY ++ELL+L K T+E L + Sbjct: 120 GEIKPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +IDV++ LRK+L IETV G GY L E Sbjct: 180 WGPGFEADSNLIDVYVKNLRKRLGED-----VIETVRGVGYRLGE 219 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + L+ ENF V GED +E K ++D ILD+ L + G+E Sbjct: 7 RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + S PV LS + DKV GL+ G DDY+SKPF EL+AR+RA++RR Sbjct: 67 LCRRLR-SFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I ++++ DA T I LT +E++++ L +++E L + Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E K +D I +LR K++ A + +ETV G GY R+ Sbjct: 186 GWEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRFRQ 229 >gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + +E + D +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G+DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIRRESEV-PIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +L+ N ++E +++ Sbjct: 120 VKGNQRENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223 >gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021] gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 233 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A + + GE G+ + +D +++D L G Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 65 SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + +V QG I L +E++++E L +T+ M L +++ Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV + +LR K+ + T+ G GY+++++ Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDD 228 >gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A +E+ L S+ + VY D + G+++ + ++LD+ + + G Sbjct: 4 INILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIMMPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCKKIR-ETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122 Query: 121 GHAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 V+ N D V V G I LT E+ ++ LL+ + Sbjct: 123 QLNPQSNVSSSAKNEISIKGLIINKDNHKVIVYGEEIKLTPIEFDILYLLASNPGRVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED ++ L S + V G ++ + D I+LDL L I G E Sbjct: 5 KILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGIDGLE 64 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ PV +L+ D+V GL+ G DDYI KPF+ ELV R++A++RRS Sbjct: 65 VCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRRS 124 Query: 120 RGHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +A TVE G + LT E+++ L + T++ L Sbjct: 125 TEQPEPRRPGKWSREGLSVDFEAHTVECDGDLVALTATEFKLFSELLQHEGKVRTRDHLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D E + +D I +LR+KL A +YIETV G GY + Sbjct: 185 DTVWDTHFEGYSRTVDTHIRRLRQKLGPYA---DYIETVRGVGYRFK 228 >gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952] gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952] Length = 226 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + I+ L + +++VY G +E + D ++LDL L D G Sbjct: 1 MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ S +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ Sbjct: 61 TVCRKIR-EVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 119 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+L V +++ V + ++LT E+ ++ L N ++ + Sbjct: 120 TLSNPNKLSSSNGELIVYPESRHVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID I LR K+ N A YI TV G GY Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 239 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I DL +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 234 >gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 117/240 (48%), Gaps = 20/240 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +I L+ E + V G + + D ++L++ L + G Sbjct: 6 RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPGLDGLA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + P+ +++G S+ D++ GL +GADDY+ KP+ EEL+AR+RA++RR R Sbjct: 66 VARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRRGRT 125 Query: 122 HAQSLIVTGDLSV-------------------NLDAKTVEVQGHRIHLTGKEYQMIELLS 162 + V + + V G + LT E+ +++L Sbjct: 126 VPAAPPVRAPSPWQAPARPEPGARLAFADMTLDTLTRQVTRSGRALDLTKTEFALLKLFL 185 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R L++ L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 186 SRPRQVLSRAAILRDVWGFDFEPSSNTLDVYVMYLRRK-TEAGGEPRVVHTVRGVGYVLR 244 >gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149] gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149] Length = 232 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDDK + +++ L+S+ + V++ G +G+E+ + + I+D+ + + G Sbjct: 5 HILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKEDIHLAIVDIMMPRMDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTMKLR-EKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ V G L +N D V + G + LT EY+++ LL+ + E Sbjct: 124 FMEKLEVRENVHVIGGLEINEDTVEVSIDGKPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ I V + +R+K+ Y++ VWG GY + + Sbjct: 184 ERVWQ-EKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEKQ 231 >gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC 14580] gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580] gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2] gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus licheniformis ATCC 14580] gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580] gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G K ++D +I+D+ L + G Sbjct: 1 MKILMIEDNLSVCTMTEMFFAKEGFETEFVHDGLEGYNRFKSGDWDLLIIDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R P+ +L+ + D+V G + GADDY++KPF+ LVARI+A+ RR + Sbjct: 61 TICKKVREESTV-PIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARIKAVSRRYQ 119 Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEM 173 + T +N + V + G +I +LT KE+ ++ L ++E Sbjct: 120 NAGRQDSADSDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSPKQVFSREQ 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKL + + Y TVWG GY E+ Sbjct: 180 LLEQVWGYQFYGDERTVDVHIKRLRKKLGSDSRPFLY--TVWGVGYKFDED 228 >gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++++ +E +LK E + + D GE +E + D +ILD+ L I G+E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DK G GADDY+ KPF+ EL R++A++RRS Sbjct: 66 VCRTIR-ETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + I G+L +N ++ V V+G ++LT KE++++ ++ + T+E Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + I VFI KLR+K+ YI+TVWG GY Sbjct: 185 LFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae] gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae] gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 226 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + IDV + +LR K+ N G I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGT-KLIQTVRGVGYILEAP 224 >gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 229 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A + L L +E + V+ +D +E K D +LD+ + +I GFE Sbjct: 4 KILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPEISGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K PV +L+ DK++GL GADDYI+KPFN ELVAR++A +RR + Sbjct: 64 ICRIIR-EKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S + + D+ + ++LT E+ ++ L + +T E Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR+K+ +I+TVWG GY + E Sbjct: 183 AVWKKKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229 >gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 230 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ ++ L F V + GE+G++ ++D I+LD+ L GF Sbjct: 4 RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR IST + +LS D+V GL GADDY++KPF+ E+V++I+AI+RR Sbjct: 64 VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G + ++ V V G I T KEY+++E L K +++++ L+ Sbjct: 124 LSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ + + +I+DV I K+R+KL + I+T+ G GY+L + D Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKLKDYGIK---IKTIRGIGYMLEDEVHD 230 >gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D++ + + + LK + F V G + I+ + + DA+ILD+ + + GF+ + Sbjct: 2 LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDAV 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121 + LR PV L+ ++ED+V GL GADDY++KPF+ EE+VAR+R I+RR+ Sbjct: 62 KRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTLS 121 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++ D+ V G + L+ E+ ++ L L T L+K L+H++ Sbjct: 122 AAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDHVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + +++ ++ LRKK+ I T+ G GYVLRE Sbjct: 182 DYDFGGDGGVVESYVSYLRKKI--DTAEPRLIHTIRGVGYVLREP 224 >gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75] gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + ++ + D +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G+DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIRKESEV-PIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +L+ N ++E +++ Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223 >gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 231 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE + +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 239 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G +EL D +ILD+ L DI GFE Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV LS ++ DK+ GL G DDY++KPF +EL+AR+RA++RR+ Sbjct: 66 ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 D+ ++ DA V G I L+ E+ ++ N L++ Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ E I+D ++ LR+KL G + I T G GYVLR Sbjct: 186 LDAVWSYDYGGESTIVDQYVSYLRRKLGRH--GPSLIHTQRGFGYVLR 231 >gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA + L+ E F G G+E + + D I+LDL L + G E Sbjct: 4 RILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGMLGTE 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V +ALR PV +++ D+V G + GADDYI KPF+ EL RIRAI+RR Sbjct: 64 VCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAILRRC 123 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GD+ ++ + V LT E++++ L R+ ++++ L Sbjct: 124 DVEQPTGSPLLTLGDIVIDRERHRVVSADAETDLTSTEFKLLLYLVERRGRVISRDQLLQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ D + + +D I +LR KL I+TV G GY + EN Sbjct: 184 DVWSYHDVGDTRTVDTHITRLRGKLGAPGEQ---IKTVRGFGYKIEEN 228 >gi|239979030|ref|ZP_04701554.1| two component system response regulator [Streptomyces albus J1074] gi|291450908|ref|ZP_06590298.1| two component system response regulator [Streptomyces albus J1074] gi|291353857|gb|EFE80759.1| two component system response regulator [Streptomyces albus J1074] Length = 221 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A IE L++ F V GE + FD ++LD+GL GF Sbjct: 3 RILIVEDEERIASFIEKGLRANGFTTTVAADGESAHDYALTGGFDLVLLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A+++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R + Sbjct: 63 VLRDLREARVTAPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+++++L + + LT +E+ ++EL L++E L+ ++ Sbjct: 123 APEVTVLRCGEVTLDLRTRRARSGEETVDLTAREFVLLELFLRHPGQVLSREQILSQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LR+KL IETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRRKLGAH-----RIETVRGMGYRL 218 >gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + ++ + D +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G+DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIREESEV-PIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +L+ N ++E +++ Sbjct: 120 VKGNQCKNLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNTCIYDRIIDTHIKNIRAKLDQDSKSPTYIKTIRGMGYRF 223 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + I L+ + F++ + G + + + D ++LD+ + D+ GF Sbjct: 5 MHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPDMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ L+ S ED+++GL+ GADDYI KPF+ EL ARI +RR R Sbjct: 65 EVCQRIR-QTSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIR 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S I GD+ ++ D + V + I+LT +E+ ++ L L + ++E L Sbjct: 124 GLSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183 Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ +D I LR KL G + +I+TVWG GY E Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEEEE 228 >gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter winogradskyi Nb-255] gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L++E + V G++ K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDY+ KPF+ EL+AR++++ R Sbjct: 64 LCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S S++ GD+ ++ D V G I L EY+++E ++E L+ + Sbjct: 124 SPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV I +LRK L+ G + I TV G GY L E Sbjct: 184 WGRDVYIDERTVDVHIGRLRKLLNPD-GELDPIRTVRGAGYALDEQ 228 >gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRIL++EDDK + + L+ V D G DG+ + FDAIILD L I G Sbjct: 1 MRILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR TPV LS + ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRG 120 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G + GDL ++L ++ V+ G +I L +E++++E L +T+ M L + Sbjct: 121 KGEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D +P+ +IDV I +LR+K+ + + TV GY+LR Sbjct: 181 WDYHFDPQTNVIDVHISRLRQKI-DKPFDTPLLHTVRNAGYMLRVEEP 227 >gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 224 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S+N+ + V V G +I LT KE+ +++LL K +++E LN + Sbjct: 122 GASEEEGKTEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 221 >gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10] gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516] gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F] gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola] gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003] gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10] gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516] gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F] gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola] gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004] gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038] gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003] gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ ED+ + + + +L E + + G + L + + D IILD+ + ++ G+ Sbjct: 1 MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R TP+ LS D+V GL+ GADDYISKPF E+ ARI+ IVRR Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 GDL V + R+ L+ +E ++ L K +T++M Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++ P+ + +D I KLRK + I TV G GY Sbjct: 181 DAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A+ + L E F V V G G+E + D ++LDL L I G E Sbjct: 4 RILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGIDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ IL+ S+ D+V GL++GADDY+ KPF EL+ARIR +RR + Sbjct: 64 VARRLRAASDV-PIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS I +L+++ A+ + + RI LT KEY +++L N LT+E+ + ++ Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL A GG I+TV G GY+LRE+ Sbjct: 183 YDFGGESNIIEVYVRYLRQKLE-AGGGSRVIQTVRGAGYILRED 225 >gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + L+S F G +G+ + A+ILDL L + GFEV Sbjct: 6 ILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLMLPGLDGFEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + P+ +L+ D++ GL+ GADDY+ KPF+ ELV R+R++++R Sbjct: 66 CKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKRHA 125 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V LSV++ A V + G + LT E++++ L LT++ LN + Sbjct: 126 PEPEKRQVLARDGLSVDMAAHRVSLDGAEVALTATEFKLLAELFQSAGRVLTRDRLLNSV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +D + +LR+KL + A + IETV G GY +E Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLGHFA---DMIETVRGVGYRFKE 227 >gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 225 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ L+ ++V V + G DG+ L + ++D I+LD+ L + G+ Sbjct: 1 MRILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ + D+VRGL+ G DDY+ KPF EL+AR+R + RR Sbjct: 61 AVLKVLR-ATRTTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL ++++ + V RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + I+TV G GYV+ Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDDFPV-KLIQTVRGVGYVIE 220 >gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 248 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 22 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 82 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140 Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 141 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 248 >gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+IED++++ + ++ L E + VY GE+G+ + D +ILDL L + G Sbjct: 4 IKILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAEDIDLVILDLMLPKMLGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ +R PV +LS DKV GL+ GADDYI+KPF+ EL+ RI+A++RR Sbjct: 64 DVMKEIRNRSEV-PVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRRIE 122 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L+ G I+LT E+ +++ L N T++ + Sbjct: 123 KYNIPRADIIKTLDGRLEMDLEYNRFFKDGVEIYLTKNEFSILKTLFSNPNKIYTRDEII 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + YI+T++G GY Sbjct: 183 EITFGYDYDAYDRAIDTHIKNIRQKIEDNPKKPMYIKTIYGMGYK 227 >gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + ++ L F V + GEDG+ +D +ILD+ L I G+ Sbjct: 1 MKILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VLR +R + PV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R+ + R Sbjct: 61 SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V I +LR K+ + I TV G GYVL A Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKM-DDGFEPKLIRTVRGMGYVLEVTA 225 >gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] Length = 241 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K + I ++ + D G D + + K D +ILD+ + + GF V Sbjct: 23 VLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFSV 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R + P+ +L+ +DK++G + GADDY++KPF+ + L+A+ A++RRS Sbjct: 83 CKLAR-EMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G + V + V + G I LT KEY+++ L + ++ LN ++ Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWGYD 201 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LR+KL + I T+ GY Sbjct: 202 FEGTTRTVDTHIKTLRQKLGDEGKH---IVTLIRSGYKFE 238 >gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus ATCC 19977] gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus] Length = 247 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + F+VY D G ++L + DA+ILD+ + + GF Sbjct: 22 KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGFG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR I P L+ ++DK+ GL GADDY++KPF+ EE+VAR+R I+RRS Sbjct: 82 VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKI--DNGEKRLLHTLRGVGYVLREP 246 >gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20] Length = 238 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54 RILL+ED++ + L+ + F V + G+ +E+ + D ++LDL L Sbjct: 6 RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 65 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EV +R S PV +L+ + DK+ GL+ GADDY++KP++ EL+AR++A Sbjct: 66 PRLDGTEVCTRIR-RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 124 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RRSR A G + ++++ V V G + + +E++++EL LT+ Sbjct: 125 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L L+ E + K +DV I +LR ++ A I TV G GY L ++ Sbjct: 185 SQILERLWGPDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLDGDS 238 >gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 587 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 117/222 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L + LK+ N+ V + GE G + +E+ +ILD+ L + G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+ S EDKV GL +GADDY+ KP EEL+AR+RA++RR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL++N + Q + LT KEY ++EL + + + HL+ Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I LR KL +A G IE V+G GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 52.3 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+ I DD + +E +L V + ++ + D +I+D+ + G + Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 62 VLRALRVAKISTPVCI 77 + + +R + I Sbjct: 547 LCQVIRNEPRWRYLPI 562 >gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ + ++ L+ E F V G++ + + + D ++LD L + G + Sbjct: 4 KLLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S DK+ GL+ GADDY++KPF+ EL +RIRA++RR RG Sbjct: 64 VCREIRQTSHCGIIMV-TARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I +L ++ V G + LT E++++ L+ R ++ L Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +D I LR+KL + YI+TV+G GY E Sbjct: 183 EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRFGE 226 >gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC 19977] gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus] Length = 249 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 11/228 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA + LK E+F V++ G ++L + + D +ILD+GL + G EV Sbjct: 19 LVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIEVC 78 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LRV + V +L+ + D + GL GADDY++KPF+ E+VAR+RA++RR R Sbjct: 79 RQLRVFSDAY-VVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRRAP 137 Query: 124 Q----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V G L +N+D + V V + LT E+ ++ LS R L+++ Sbjct: 138 ESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSRKQ 197 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ I+DV + LR+KL ++ Y+ TV G GY + Sbjct: 198 LLDTVWGDTWVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGYRM 245 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+ S+ L ++V + + G D + + DA++LD+ + + G E Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 64 VCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTTI 123 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL+++ + V I LT E+ ++E+L LT+ L + Sbjct: 124 DESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRILEEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V++ LR+K + A G I TV G GYVLRE Sbjct: 184 WGFDFPTSGNALEVYVGYLRRK-TEAEGELRLIHTVRGVGYVLRE 227 >gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71] gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71] Length = 258 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A I + L+ N ++ D G+ ++L +D I+LDL L + G + Sbjct: 23 RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR TP+ +L+ SS D+V GL+ GADDY+SKPF+ EL AR +A++RR+R Sbjct: 83 ICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTRM 142 Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + G + V + G RI LT +E+ ++ + + Sbjct: 143 NRHQENAELEQNGAAEPLKLGPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRVF 202 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ ++ + ++ I +LR K+ G Y+ TVWG GY + Sbjct: 203 RRSELLDEVWGYGHDGYEHTVNTHINRLRGKIETDPGNPQYVNTVWGVGYRFQ 255 >gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 224 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + V V G I LT +E+ + +L ++ L Sbjct: 121 KEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814] gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814] Length = 242 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + ++ L E+++V G + ++ +D IILD+ L G+ Sbjct: 19 MRLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGIILDIMLPGKDGY 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR + TPV +L+ SIED+V+GL GADDY+ KPF EEL+ARIR ++RR Sbjct: 79 EILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++ D + V G+ I L+ KE+ ++E L KN +T++ + +D Sbjct: 139 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +IDV+I LRKK+ +A + I TV G GYV+REN Sbjct: 199 FDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMRENE 242 >gi|111022588|ref|YP_705560.1| response regulator (protein-glutamate methylesterase) [Rhodococcus jostii RHA1] gi|110822118|gb|ABG97402.1| response regulator (protein-glutamate methylesterase) [Rhodococcus jostii RHA1] Length = 228 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G D +E DAI+LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDAIVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 GHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + V I LT E+ ++E+L LT+ L Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G + TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GETRLLHTVRGVGYVLRE 225 >gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD L ++ L+ E F++ G+ IELC+ D I+LD+ L D G + Sbjct: 8 KILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGLD 67 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R + PV L+ +S D++ GL+ GA+DY+ KPF EL+ARI+ R Sbjct: 68 ICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRNQ 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ L G ++ + V + G + LT E++++E L R ++E LN ++ Sbjct: 128 ATPARLLEAGGV-ELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +DV++ +LR+K+ I +V G GY Sbjct: 187 GQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+K + + L+ E F V G +EL K ++LDL L + G Sbjct: 1 MKVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGL 60 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 +V R LR + P+ +L+ + DKV GL+ G DDY++KPF +ELVAR++A I R Sbjct: 61 DVCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L ++LD TV ++ + LT KE+ +++ L L K LT+E L+ Sbjct: 121 SEEVQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDR 180 Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E E + +DV + +LR+KL A I TV GY +++ Sbjct: 181 VWGYERASEIESRTVDVHVRRLREKLGPEAA---RIVTVKSVGYRFNQDS 227 >gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 248 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +E + E D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKE 129 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I DL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 HAAGIPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Frankia alni ACN14a] gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Frankia alni ACN14a] Length = 240 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G ++L D +ILD+ L D+ GFE Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S PV L+ + DK+ GL G DDY++KPF +ELVAR+RA++RR+ Sbjct: 66 VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 D+ ++ D V G I L+ E+ ++ N L++ Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++ E ++D ++ LR+KL G + I T G GY LR A Sbjct: 186 ILDAVWSYDFAGEPTVVDQYVSYLRRKLGRH--GPSLIHTQRGFGYALRLPA 235 >gi|56552283|ref|YP_163122.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761659|ref|ZP_04759746.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543857|gb|AAV90011.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241373967|gb|EER63500.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 147/228 (64%), Positives = 186/228 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A SIELML + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A++ TP+ +LSG++ +E KVR L GADDY++KPF++EEL+ARI+A+VRRS+ Sbjct: 61 EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD+KTVE+ +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY Sbjct: 121 GHSQSIIKTGRLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVF+CKLRKKL+ A +NYIETVWGRGY+LRE E Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILREAEHAE 228 >gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238 >gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ EDD + + ML E ++V + D G+ + + + D IILD+ + ++ G+ Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V + +R TPV LS DKV GL+ GADDYI+KPF E+ ARI+ I RR Sbjct: 61 SVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARRCL 120 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + GDL++ + Q I L+ +E +++ L KN +T++M L+ Sbjct: 121 KAKQNSPDQSFIFGDLTIYPMELCAKRQQQTIELSLREIKILSCLHRYKNQIVTRDMLLD 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ P + +D I KLRK + + I+T+ G GY +E Sbjct: 181 WVWGVDHLPNSRTLDQHISKLRKMIESDPNTPLLIKTIHGYGYRYQE 227 >gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L SI +LK ++++V GE+ ++ E+D IILD+ + + GF Sbjct: 1 MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L+ LR + +L+ ++ED++ GL GADDY+ KPF EL+ARIRA+ R + Sbjct: 61 TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + I D+++NL K V + I LT KEY+++E L+ ++ L++ H++ Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E IIDV I LR+KL + + I+T G GYV+ Sbjct: 181 DYDYYGESNIIDVLIKNLRRKL-DNNRDGSLIKTKRGLGYVI 221 >gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] Length = 227 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 234 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK +NF VY + G + + + + DA ILD+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L LR + PV L+ ++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N D V G I L+ E+ ++ L K L+K L++ Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGETQLIHTVRGVGYVLRTP 232 >gi|169349485|ref|ZP_02866423.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552] gi|169293560|gb|EDS75693.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552] Length = 271 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A +IE+ LKS+N+NVY+ + G +G+++ + + I+D+ + + G E+ Sbjct: 39 ILVVEDEIEIAKAIEIYLKSQNYNVYIANNGLEGLKIIEQHPIHLAIVDIMMPVMDGIEM 98 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ LS S DK+ GL G DDY++KPF EL+AR+ + +RR Sbjct: 99 TMKIR-EQYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHKF 157 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L +++D K V + G + +T E +++ELL + + E Sbjct: 158 LNIIDQKQENTHKYIVGGLELDIDTKEVIIDGKIVKVTPIELKILELLMEKPGRVFSSEQ 217 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + + V I LR+K+ Y++ VWG GY + + A E Sbjct: 218 IYENVW-HEAAINTETVMVHIRNLREKIEINPSNPQYLKVVWGVGYKIEKQANHE 271 >gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A +E+ L S+ + V+ + ++G+E+ E ++LD+ + + G Sbjct: 4 INILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIMMPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCRKIR-ETNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122 Query: 121 GHAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + N D V V G I LT E+ ++ LL+ + Sbjct: 123 QLNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIEK 234 >gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 235 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ ED+ + + + +L E + + G + L + + D IILD+ + ++ G+ Sbjct: 1 MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R TP+ LS D+V GL+ GADDYISKPF E+ ARI+ IVRR Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 GDL V + R+ L+ +E ++ L K +T++M Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++ P+ + +D I KLRK + I TV G GY Sbjct: 181 DAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ ++ IE+ L E + V V G + +E + E+ I+LD+ + + G E Sbjct: 5 KILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGLNGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V R +R P+ +L+ S + DKV GL GA+DY++KPF EEL+ARIR R Sbjct: 65 VCRRIR-QFSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKLV 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D+ ++ V G I LT KEY +++ L + KN LT+E + ++ Sbjct: 124 KSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DVFI LR K+ + + I T+ G GYV+++N Sbjct: 184 YDYVGDTNVVDVFIRYLRSKI-DNGSKEKLITTIRGVGYVIKDN 226 >gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Sinorhizobium meliloti 1021] gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VFI +LRKK+ N IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGND-----LIETVRGLGYRMQAPG 220 >gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316] gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L SI +LK ++++V GE+ ++ E+D IILD+ + + GF Sbjct: 1 MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L+ LR + +L+ ++ED++ GL GADDY+ KPF EL+ARIRA+ R + Sbjct: 61 TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRAN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + I D+++NL K V + I LT KEY+++E L+ ++ L++ H++ Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E IIDV I LR+KL + + I+T G GYV+ Sbjct: 181 DYDYYGESNIIDVLIKNLRRKL-DNNRDGSLIKTKRGLGYVI 221 >gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ++ ++ L L + V GED + + + D ++LDL L + G Sbjct: 4 RVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMDGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LRV PV I++ + +D + GL++GADDY++KP EL ARIRA++RR+ Sbjct: 64 VCHELRVRGDL-PVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDL ++ +TV G +I LT E++++ L+ + +T+E L+ ++ Sbjct: 123 VRRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWGR 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++DV I +LR+K+ + TV G GY Sbjct: 183 DYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGYR 221 >gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89] gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 7 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 67 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 127 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 235 >gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098] gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L + + GE+ I++ + ILD+ L + G+E Sbjct: 7 KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLPGMSGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R T + ++S S DK+ GL+ GADDYI KPFN +EL+ R+R+++RR Sbjct: 67 VCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVNF 126 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G +++L AK+ I +T E+ +++ K +T++ Sbjct: 127 SQDKANNKIKESISDGPFTLDLYAKSFYKNEREIDVTPTEFTILQYFIQNKGKAMTRDEI 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ + YIETVWG GY + Sbjct: 187 MTKTWGENYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYRWK 234 >gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175] gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD+ + + + LK+E++ + G+ +E K Y D IILD+ + + G Sbjct: 11 MKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLDG 70 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+ +R P+ +LS S+ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 71 ISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRS 130 Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I G L++ ++ V G I LT E+ ++ LL+ N + + Sbjct: 131 TITQEGPANEEITIGPLTIKKESHQVTTSDGKEIQLTVLEFGILFLLASHPNRVFSADEI 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ K + V + LR K++ A GG+ IETVWG GY + + Sbjct: 191 FETVWQQESIVSTKTVMVHVSHLRDKIAEATGGEKVIETVWGVGYKIED 239 >gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+ L ++ L+ F V T G++ +E K +D IILDL L G ++ Sbjct: 3 VLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGLDI 62 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ +S + KV+G GADDY++KPF+ +EL+ARI A++RR+ Sbjct: 63 CKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRRAG 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ + + +K+V V G+ I+LT E+Q++E ++E L ++ Sbjct: 123 YVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEKIWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +DV+I +LRKKL + Y++T+ GY L + Sbjct: 183 HDHNETTRTVDVYISRLRKKLGDKG---KYLKTLPRLGYKLTKE 223 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F V+ G I+L D ++LD+ L D+ GFE Sbjct: 5 RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDLDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR I +PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+ Sbjct: 65 VTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTNH 124 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++ D+ V G + L+ E++++ L L L+K+ L+H+ Sbjct: 125 QIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDHV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLS-----NAAGGKNYIETVWGRGYVLREN 224 +D + I++ +I LR+K+ + + + I T G GY+LR+ Sbjct: 185 WDYDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYMLRKP 235 >gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 257 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS G Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 HAQS + G + ++ V V+GH + LT EY+++ L +++ + HLYD Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL I+TV G GY+L D Sbjct: 210 DFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPPAD 250 >gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ + L L N E L + D I+LD L + G E Sbjct: 5 ILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWMLPGMSGIEF 64 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ + P+ +L+ DKVRGL+ GADDY++KPF+ EL ARI+A++RR Sbjct: 65 ARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L ++ V G + L E++++ L ++ L+ ++ Sbjct: 125 PQMTDDPLEIGGLRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R E + +DV I +LR+ LS +G + +I+TV G GY Sbjct: 185 GDRVFVEDRTVDVHIRRLRRALSE-SGHEEFIQTVRGVGYRF 225 >gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 235 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A L++ F+V ++ G++G + ++ ++LD+ L GF Sbjct: 3 KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + RA+R P+ ++S DK+R L GADDYI KPF+ EL AR++A + R Sbjct: 63 ICRAVRKELDI-PILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L + V V G +HL +E++++ L+ +KE Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++D + V + +LR+K+ +++TVWG GY A+ Sbjct: 182 DRVWDLDAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFNSEAQ 232 >gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDD + ++L L + F V D G D ++ + D +LDL + + G+E Sbjct: 4 KILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLDLIMPIMNGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R + P+ I S I DK+ L GADDY++KPF E++ARI + +RR Sbjct: 64 LTKNIR-EISNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRCYE 122 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G+L+++LD T+E G I++T EY+++ L +K Sbjct: 123 LDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSKAQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + + V I LR+K+ YI+TV G GY + Sbjct: 183 LYESINGEYCDSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIE 231 >gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V V + GE G++ ++D ILDL L + GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICRQVRDEKNT-PIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228 >gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+AR +A++RR Sbjct: 67 ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRSS 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ GD +NL + + + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSKDVQIVEFGDYKLNLATREMTAGDKPLTLTSGEFAVLKSLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ L YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFVPDGE 238 >gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 225 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + ++ + D +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIRKESEV-PIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +L+ N ++E +N+ Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNRIFSREELMNY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223 >gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] Length = 231 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L E + V GE+ ++L ++ D +I+D+ + + G Sbjct: 4 ILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVMMPRLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K + P+ ILS S DK+ GL GADDY++KPFN EL AR+++ +RR Sbjct: 64 TLKIR-EKQNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRRYTQL 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ G L ++ D K + V G + LT EY ++ LL + + + Sbjct: 123 GSTVEKENQAVYTVGGLMIDDDQKEITVDGEPVKLTPIEYNILLLLVKNQGKVFSIDQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 ESIWNEDAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230 >gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens CN-32] gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L+ F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR++ + R + Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S LS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDYETKLIQTVRGVGYMLE 222 >gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 126/231 (54%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ ++ L + V GE+ L +D I+LDLGL I G Sbjct: 1 MRVLLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G L ++ A V G + LT EY+++ + + + +++ + HLYD Sbjct: 121 GIASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230 + + I+VFI +LRKK+ + IETV G GY L + E Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGSD-----RIETVRGLGYRLAPLTGESEAA 226 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + I LK + F++ G D + + D ++LD+ + D+ GF Sbjct: 5 MHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPDMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ L+ S ED++RGL+ GADDYI KPF+ EL ARI +RR R Sbjct: 65 EVCQRIR-QTSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIR 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S I GD+ ++ D + V + I+LT +E+ ++ L L + ++E L Sbjct: 124 GLSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183 Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ +D I LR KL G + +I+TVWG GY E Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEEEE 228 >gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+ L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I+TV G GY+L A Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPA 220 >gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70] gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218] Length = 227 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V + G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ ++A L+ F V ++ G++G+E ++D ++LDL L + G+E Sbjct: 3 KVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLMLPGLDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R A P+ ++S + DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRRIR-ATKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINRYDR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I +L ++ ++ V G LT KE+ ++ L+ N KE Sbjct: 122 LAGVSAANRDIIEVRELKIDSSSRRVWSYGKERTLTAKEFDILRFLAEHPNKVYAKEDLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I +R+K+ + +IET+WG GY R Sbjct: 182 KEVWGLESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRFR 228 >gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 EDL933] gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. Sakai] gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. MG1655] gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli CFT073] gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046] gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. W3110] gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89] gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536] gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS] gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4113] gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4401] gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4501] gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4486] gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4196] gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4076] gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC869] gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC508] gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC 8739] gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli SMS-3-5] gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638] gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11] gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22] gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019] gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171] gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012] gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. EC4024] gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4206] gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4045] gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4042] gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4115] gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11] gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli O127:H6 str. E2348/69] gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. TW14588] gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii ATCC 35469] gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88] gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a] gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39] gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli UMN026] gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972] gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA] gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BW2952] gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. TW14359] gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp. 4_1_40B] gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O103:H2 str. 12009] gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O26:H11 str. 11368] gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O157:H7 str. FRIK2000] gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O157:H7 str. FRIK966] gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O55:H7 str. CB9615] gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR [Escherichia coli FVEC1412] gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR [Escherichia coli B354] gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185] gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302] gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101] gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736] gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736] gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605] gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718] gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206] gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143] gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280] gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299] gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli] gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073] gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli] gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. MG1655] gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K12 substr. W3110] gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli UTI89] gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator protein [Escherichia coli 536] gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS] gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5] gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4196] gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4113] gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638] gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4076] gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4401] gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4486] gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4501] gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC869] gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC508] gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11] gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22] gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019] gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171] gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012] gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4206] gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4045] gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4042] gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4115] gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11] gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O127:H6 str. E2348/69] gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. TW14588] gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia fergusonii ATCC 35469] gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli S88] gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli IAI39] gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli ED1a] gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli UMN026] gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82] gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA] gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972] gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BW2952] gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O157:H7 str. TW14359] gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O26:H11 str. 11368] gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O103:H2 str. 12009] gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli DH1] gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15] gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042] gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O55:H7 str. CB9615] gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR [Escherichia coli FVEC1412] gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185] gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR [Escherichia coli B354] gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034] gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302] gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101] gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU 83972] gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146] gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1 str. NRG 857C] gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli DH1] gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1] gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431] gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR [Shigella boydii ATCC 9905] gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. EC1212] gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR [Escherichia coli WV_060327] gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. G5101] gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H- str. 493-89] gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H- str. H 2687] gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7 str. USDA 5905] gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14] gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010] gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G] gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68] gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1] gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520] gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482] gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252] gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263] gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863] gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007] gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3] gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253] gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167] gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii ECD227] gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. 1044] gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. 1125] gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v] gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR [Escherichia coli AA86] gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736] gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605] gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718] gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206] gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143] gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280] gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299] gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae 155-74] gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82] gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88] gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6] Length = 227 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612] gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A +EL L +E + V ++ + + +LD+ + ++ GF + Sbjct: 5 ILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVMMPELDGFTL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K + P+ +L+ DK+ GL GADDY++KPF ELVAR++A +RRS+ + Sbjct: 65 CRRLR-EKYTFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLRRSQRY 123 Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + ++N + + + LT E+ ++ L + ++ E Sbjct: 124 NGGQQEAGAIAAYRGLTLNRETHVCTLDEKPVELTPIEFSILWTLCKNRGRVISSEELFK 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I LR+K+ ++A YI+TVWG GY + Sbjct: 184 EVWGEKYFTGNNTVMVHIRHLREKMQDSAENPRYIKTVWGVGYKI 228 >gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 250 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 11/238 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR ILL++D++ + + L LK ENF +V G + + L K + FD I+LD+ L D Sbjct: 12 MRTENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD 71 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I GFE+ R +R +TP+ ++ SS DK+ GL G DDYI+KPFN E+ ARI + Sbjct: 72 IDGFELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQL 130 Query: 117 RRSRGHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RR + + S+ + V G +H T KE +++ L N T Sbjct: 131 RRQQMLIRHHKEEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFT 190 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E ++ + K + + I KLRKK+ YI + G GY + K++ Sbjct: 191 AEQLYEQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKEQ 248 >gi|297562675|ref|YP_003681649.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847123|gb|ADH69143.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ +E + + D ++LDL L G + Sbjct: 4 RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVAR+R +RR+ Sbjct: 64 VCRQIRAESGV-PIVMLTAKSDTIDIVLGLESGADDYIVKPFKPKELVARVRVRLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GD+++++ V G +I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEVLQIGDITIDVAGHAVRRDGEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEVVVTVRGVGYK 221 >gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + DG+ + + I+LD + G + Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ PV +L+ EDKVRGL++GADDYI+KPF+ +EL AR+ A++RR Sbjct: 64 FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRV 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I L ++ + V + + + E++++ ++E LN++ Sbjct: 124 SPTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEE-TGHDRLIQTVRGAGYRF 225 >gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella excrementihominis YIT 11859] gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella excrementihominis YIT 11859] Length = 260 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 8/238 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L + L + F+V V + E L FDA++LD+ + G Sbjct: 21 RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGIS 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R + +TP+ +L+ D++ GL+ GADDY+ KP+N EL+AR+ AI+RR Sbjct: 81 ILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRREP 140 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G+ S++L + + I LT E+ +++ + L+++ Sbjct: 141 VDPPGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTGEFAVLKTFARHPRVPLSRDK 200 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + E + +DV + +LRK + Y++TVWG GYV + + + Sbjct: 201 LMEMARGREYEAFDRSLDVQVSRLRKIIEPDPSKPRYLQTVWGLGYVFIPDGASDAQD 258 >gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] Length = 232 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++DD + I L LK E + V G + I + + ++LD+ + + Sbjct: 1 MKQQSILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R +R K + PV LS S+ DKV GL +GADDYI+KPF+ ELVAR++A +R Sbjct: 61 DGVEVCRRIR-EKFNIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 119 Query: 118 RSRGHAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q + ++ ++TV + G I+LT EY ++ L++ +N T Sbjct: 120 RYTYFNQVPSEVHENKIQIRGLEIDELSRTVMLYGKSINLTKTEYDILHLMAKNRNRVFT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ R + V I +LR K+ I+ VWG GY + + Sbjct: 180 LEEIYESVWRERAHESNNTVMVHIARLRNKIEENPKESTIIQNVWGVGYKIED 232 >gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126] gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126] Length = 232 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 4/228 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ + P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRLGEQPLELTVKSFELLWVLASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224 ++ + ++V I LR+KL+ I+TVWG GY + + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQKLTKYTNSNAPAIKTVWGLGYKMEKP 228 >gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118] gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD + + L E F+V + G+ L D I+LDL + G Sbjct: 10 KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPT 129 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G + +L A+T+ LT E+ M++ L L++E Sbjct: 130 QEAPGSPASDSAVVTFGPFTFDLGARTLRKDDEDQPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 190 LAQLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L E + V G G+EL + FD I+LD+ L + G EV Sbjct: 5 ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + P+ +L+ S+ DKV GL SGA+DYI+KPF EEL+ARIR +R + Sbjct: 65 LRRIR-RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 123 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + L ++ D +TV ++G + LT +E+ ++ L K L++E L +++ Sbjct: 124 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +DV+I LR K+ +I TV G GYV++++ Sbjct: 184 DFAGDTNAVDVYIRFLRGKIDEVF-NVKFIHTVRGVGYVIKDD 225 >gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 234 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 12/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED++ L I L+ E V V GE+G + K + D +ILD L + G E Sbjct: 3 HILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPRMDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ +KV GL+ GADDY++KPF+ EL AR+RA++RR+ Sbjct: 63 VCRKIR-ETSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRRAAF 121 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++ + + V+++ + LT KEY+++EL ++ Sbjct: 122 GRERSEFASEGGVLSFPFIQLDREKREVKLEDQLLVLTPKEYELLELFLSYPGRVFSRAY 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ +++ + +D I +LRKK IETVWG GY E Sbjct: 182 LMDRIWEADYLENDRTVDTQISRLRKKFGLYGKA---IETVWGTGYKFNPGKGSEA 234 >gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + + +S F V G +G+E+ + ++LDL L + G + Sbjct: 5 RILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGMSGLD 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + PV +L+ D++ GL+ GADDY+ KPF+ ELV RIRA+++R+ Sbjct: 65 VCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKRA 124 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +S L+++LDA VEV G LT E++++ L + T++ L Sbjct: 125 QGVAENPQRSQWQIDGLALDLDAHRVEVDGEEAALTATEFRLLAELVRNRGRVRTRDQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ E + +D + +LR+K+ A IET+ G GY +E Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGGYAA---MIETIRGVGYRFKEQ 230 >gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CDC1551A] Length = 234 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 5 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 65 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 125 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 185 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 227 >gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 225 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + V G + +++ + + IILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R+ P+ +L+ D+++G + G D+YISKPF+ + LVAR+ AI R + Sbjct: 65 QVCREVRM-HSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTN 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ G +SV+ A V++ G I L+ KE++++ + L++E LN+++ Sbjct: 124 VFAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL + YI+T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKG---EYIKTIWGMGYKFE 223 >gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN + Sbjct: 122 GASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 221 >gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905] gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 113/223 (50%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+ E F D G++ + + D ++LD+ + + G+ + Sbjct: 4 ILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIMMPTMDGWTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R++A+++R R Sbjct: 64 CKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G ++++ + I L KE++++ L+ T+E ++ ++ Sbjct: 124 YSQTIKLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + IDV I +LR++ + A +IET+ G GY L + Sbjct: 184 YAGDNRTIDVHIKRLRERFAMIAD--FHIETIRGLGYRLEVDE 224 >gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E + + GE + ++ I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +LS + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR Sbjct: 66 VCREIRAKSGT-PIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYHS 124 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + DL VN+ V G + + KE +++ LS N T+E Sbjct: 125 SNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L++++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 QLLDNIWGYEYIGDTRTVDVHIKRLREKIHDN--QFWSISTVWGIGYKFE 232 >gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 239 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ I L + + V G+ E + + D +ILD+ L D G+ Sbjct: 5 KILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQSFSPDLVILDINLPDTLGYA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + T V IL+ + DKVRG GADDY++KPF+ EL R+ AI+RR R Sbjct: 65 LCEQM-QESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRRQRS 123 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL+++ V V+G ++LT E+ ++ L+ N + + Sbjct: 124 PVAPPARDQSLDFADLNIDPMRHVVAVKGEPVNLTALEFNLLHFLAKNANKVWRRSELIQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I ++R+KL N +N I+TV G GY+ Sbjct: 184 AVWGYDYLGDQRVVDVHIGQIRRKLDNLMQQENPIKTVRGVGYMFE 229 >gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + LK+ F Y G D + + + D +I D+ + + G+E+ Sbjct: 14 ILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGYEL 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ +R P LS S DK+ GLQ GADDY+ KPFN E+V+R++A+ RR Sbjct: 74 LKKIRH-ISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDVF 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GD+ ++L + + G + +T E++++ LL TK Sbjct: 133 SKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIYE 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++ + +I V+I KLR+K+ + Y+ T+ G GY + Sbjct: 193 HVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239 >gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 128/223 (57%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN + Sbjct: 122 GASEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 221 >gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ N G I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGT-KLIQTVRGVGYMLE 222 >gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 230 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + + D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVSGIEV 64 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRIR 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I GD+ ++ A V+ QG +HL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK L+ G + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGDVDG-DPIRTVRSAGYSLDLDA 229 >gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans TK24] gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD+A+ + L L+ + V GEDG+E + + DA++LDL L + G E Sbjct: 3 RVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A P+ + + D V GL++GADDY+ KP L ARIRA++RR Sbjct: 63 VCRRIR-AHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGG 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL ++ TV QG + L E +++ LS +++ L Sbjct: 122 TADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++D + +LR K+ + G Y+ TV G GY Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGYRFGP 228 >gi|258512232|ref|YP_003185666.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478958|gb|ACV59277.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + L L+ V V GE +E + +D +++D+ L + G Sbjct: 1 MRVLIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVLPGMSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + P+ +L+ ++ D+V GL +GADDY+ KPF EEL ARIRAI R Sbjct: 61 DLCREVR-RFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIR-RRY 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ +V+LDA V +G + LT +EY ++ L N T +++ L ++ Sbjct: 119 EVNGAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV+I LR+KL + YI+TV G+GY L Sbjct: 179 FQAPGDTNVVDVYIGYLRQKLDP---ERRYIKTVRGQGYRLEVEE 220 >gi|164686841|ref|ZP_02210869.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM 16795] gi|164604231|gb|EDQ97696.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM 16795] Length = 227 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L ++V V + G++GI+L K EFD ++LD+ L I GF Sbjct: 10 KILIVEDEIDIREGISEYLSEVGYDVMVAEDGQEGIDLFKSNEFDLVLLDIMLPKINGFG 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 VL +R PV +L+ M+ ++ ADDYI+KPF+ L RI A R Sbjct: 70 VLSQIR-EISDVPVMMLTAMTDDYSQIMSFNEKADDYITKPFSVVVLHKRIEALQRRIQG 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + D+ V+ + + + L KE +++ELL KN LT+ L+ L++ Sbjct: 129 RQQNNKWIYKDVEVDFLGFCAKKDNNPVDLKPKEIKLLELLIKHKNQVLTRNQMLDSLWE 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + P ++IDV+I LRKKL I TV G GY + Sbjct: 189 IDEAPADRVIDVYIKNLRKKLDLD-----CITTVKGIGYKFED 226 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +A ++L L+ E + G G+E K +D ++LD+ L ++ G EV Sbjct: 4 ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R STPV +L+ +SI DKV GL GA+DY++KPF EEL+AR+RA +R + Sbjct: 64 LRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQSG 123 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D VN + V + LT KE+ ++ K L +E LN ++ Sbjct: 124 TEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I+DV++ LRKKL + + T+ G GY L+E Sbjct: 184 GFDYYGDTNIVDVYVRHLRKKLDLS----EVLVTLRGVGYRLKE 223 >gi|94984195|ref|YP_603559.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554476|gb|ABF44390.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD A+ + L++E V T G G D ILD L G + Sbjct: 3 RILIVDDDPAILEILGAYLRAEGHVVLETQDGTTGRAKLAEA--DLAILDWMLPGASGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R + P+ +L+ EDK+RGL++GADDY++KPF+ E+VAR+RA+ R Sbjct: 61 LARQQRRDRPDFPILLLTARGEEEDKLRGLEAGADDYVTKPFSPREVVARVRAL--LRRA 118 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + TG L ++ +T + G + L+ E+ ++ L+ +++ L ++ Sbjct: 119 RLQDSVSTGGLQLDERTRTAMLDGQELLLSKLEFDLLLTLARHPGFVWSRDRLLERVWGA 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++DV + LR+KL +IETV G GY RE A Sbjct: 179 DFPGVERVVDVHMAALRRKLGEHPEQPRFIETVRGVGYRFREEA 222 >gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 271 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 133/238 (55%), Gaps = 7/238 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E ++V G+ + L + D I+LD+ L DI G E Sbjct: 24 RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R + PV L+ S+ED+V GL +G DDY++KPF+ EE+VAR+R ++RR Sbjct: 84 VLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGA 143 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S ++ +V GDL+++ D+ V+ G IHLT E++++ L ++K L+ + Sbjct: 144 SAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRV 203 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA--KDETCEYLE 234 + + I++++I LR+K+ AG + I T+ G GYVL+ ++ Sbjct: 204 WQYDFGGQANIVELYISYLRRKI--DAGREPMIHTLRGVGYVLKPAVLTSEQAAATAP 259 >gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli E24377A] gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1] gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1] gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str. REL606] gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9] gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088] gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271] gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591] gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9] gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A] gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1] gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli IAI1] gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)] gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli B str. REL606] gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BL21(DE3)] gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088] gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli W] gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR [Escherichia coli EC4100B] gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357] gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120] gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489] gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271] gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591] gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9] Length = 227 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED+ + + E FN+ G++G+ + D +ILD+ + + G V Sbjct: 9 ILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIMMPKVDGITV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 L +R + PV +L+ EDK+ G + GADDYI+KPF+ + L+A+++A+ R S Sbjct: 69 LEMIR-KVSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLKRTSED 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L L++N + V+V I+L+ KE++++ LS + L+++ L++++ Sbjct: 128 TFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTILDNVWGL 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I +LR+KL N A YI TV G GY Sbjct: 188 DYYGDLRTVDTNIKRLREKLGNKAS---YIVTVRGSGYRFE 225 >gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 142/224 (63%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+K LA++++ L+ E + V V GE+G L + Y +D IILD+ L + G Sbjct: 1 MKILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TP+ +L+ S+EDKV+GL SGADDY++KPF+ +EL+ARIRA++RR Sbjct: 61 ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I DL ++L+ K V+ G+ I LT KE++ + LL+L KN ++KE ++ LY Sbjct: 121 ESKTSFIKIKDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I+V I +LRKK+ I T+ G GY+++++ Sbjct: 181 TDRFVSINAIEVLINRLRKKIDKDYPL-KLIHTIKGFGYMIKDD 223 >gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 225 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 112/221 (50%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + +++ L++E V G D + + D +++D+ + ++ G+ Sbjct: 3 KLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIMMPNMDGWA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ K++G G DDY+ KPF EL+ R+++I++R R Sbjct: 63 LCEEIRSFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G + +N VE+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 SLSQVVEAGHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I ++R++ A G I T+ G GY L Sbjct: 183 DYEGDERTVDVHIKRIRERFPQEASG-IAIRTIRGLGYRLE 222 >gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli] Length = 239 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 234 >gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ ++RKKL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDCD-----VIQTVRGLGYLLTPP 219 >gi|226314437|ref|YP_002774333.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097387|dbj|BAH45829.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK +A + L SE + V + + + +E K FD +LDL L D G+ Sbjct: 1 MKVLVVEDDKTIAEGLHYSLSSEGYEVVLCEGKQTALEAIKQQRFDLYLLDLTLPDGNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ ++ PV L+ + VRGL GADDYI+KPF EL++R+++ +R + Sbjct: 61 EICEYVK-ENQDAPVIFLTACDDEINVVRGLDMGADDYITKPFRIRELISRMKSSLRHYQ 119 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G++ VN V + LT EY+++ + L++ L + Sbjct: 120 KEPNLSDKVRVGNVVVNTKLAKVYKGTEEVMLTALEYRLLLAFINNRGQVLSRNQLLEGI 179 Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + V+I +LR+KL + + IETV G GY + Sbjct: 180 WDLDGNFINDNTLSVYIKRLREKLEDDSQNPKVIETVRGLGYRM 223 >gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VFI +LRKK+ N IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGND-----LIETVRGLGYRMQAPG 220 >gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 223 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL++ED+ + + L E+FNV+ GE+G+ + + D ++LD+ + + Sbjct: 1 MRKSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIMMPVMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G +L LR + PV +L+ EDK++G GADDYI+KPF+ + L+A+++A+ R Sbjct: 61 GLTMLEKLR-EVSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S L++N + V++ G I L+ KEY+++ L + L+++ L++ Sbjct: 120 TREDLDSSFQDFNGLTINKLSHEVKIDGKEIILSPKEYELLMYLVTNEGIALSRDNILDN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +D + +LR+KL + + NYI TV G GY Sbjct: 180 VWGIDYYGDIRTVDTNVKRLREKLLDKS---NYIITVRGSGYKFE 221 >gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ ++RKKL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDCD-----VIQTVRGLGYLLTPP 219 >gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] Length = 241 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+ + I+ L +NV + GE+ I++ + ++LD+ + + G+ Sbjct: 9 KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMPKLDGYS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDYI KPF+ +EL ARIR++ RRS Sbjct: 69 VCQQLRRESDV-PIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSNR 127 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + G L ++ K V R+ LTG E+ ++ELL R ++++ Sbjct: 128 NSYVVKQNKDSSIINIGSLIIDKKRKQVFKDNKRLRLTGMEFSLLELLINRSGESVSRYE 187 Query: 174 FLNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + +++DV I +LR KL + I TV G GY+ ++ Sbjct: 188 ILKEVWEYGNDSYIDTRVVDVHISRLRSKLEEDPANPDLILTVRGIGYLFQK 239 >gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51] gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DDK + +I + L E + ++ G +E+ + +I+D+ + + G Sbjct: 1 MNILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIMMPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R + PV +LS S DK+ GL GADDYI+KPFN EL+AR+++ +RR Sbjct: 61 RALMKIREERNI-PVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYV 119 Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +G L ++ ++K V V G + LT +Y++++LL+ + + Sbjct: 120 TLGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I K+R+K+ Y++ VWG GY + + Sbjct: 180 ENVWNEAAFSAENTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKIEK 227 >gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596] gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + L+ E F V + GE ++L K D +++D+ + + G + Sbjct: 4 ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ + TP LS ++ ++++ GL GADDY+SKPF+ ELV R++ I R R Sbjct: 64 VMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRSKRS 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ + V V + LT KE+ ++ LL+ +K L ++ Sbjct: 124 SEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+V I LR+KL +I+TVWG GY Sbjct: 184 EYDGDANTINVHIHHLREKLQANDEKVIFIKTVWGLGYKFE 224 >gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A IE+ L S+ + V+ + G+E+ + E ++LD+ + + G Sbjct: 4 INILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIMMPGMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCKKIR-ENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122 Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A + I + +N D V V I LT E+ ++ LL+ + Sbjct: 123 QLNPNSGSREQANNEITIKGMVINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGRVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR KL I TVWG GY + + Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKLKEDTRQSKIITTVWGVGYKIEK 234 >gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++DD LA + L+ E F V G G+E D ++LD+ L I GF Sbjct: 1 MHILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + PV +L+ D++ GL+ GADDY++KPFN EL ARIRAI+RR Sbjct: 61 EILKRLR-QRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYE 119 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 I T + ++ + V G +I LT E+ ++E+L L+++ + + Sbjct: 120 RDTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMEN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 Y+ + P + ID+ I LRKKL G + I+T+ G GY +D E Sbjct: 180 FYNRKATPFDRSIDMHISHLRKKLE---NGDDLIKTIRGVGYQFCRTPEDAAAE 230 >gi|320449542|ref|YP_004201638.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149711|gb|ADW21089.1| two-component response regulator [Thermus scotoductus SA-01] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 RILL+EDD + ++ L+ E V G + + + + + D ++LD GL D+ G Sbjct: 3 RILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGLPDLEGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LR PV +L+G + + +V GL GADDY+ KPF+ +EL+ARI+A++RRS Sbjct: 63 EVLKSLRDLDPLLPVLLLTGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRSG 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++L+A+ + G + L+ E ++ +L+ T+E L ++ Sbjct: 123 KEGRRYF--GPLELDLEARKAYLDGQPLKLSATEANLLFVLAQTPGRVYTREELLERVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++D +I LRKKL + +IETV G GY Sbjct: 181 PEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGYRFV 222 >gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 241 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 16 KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPDMDGFT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A ++TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ Sbjct: 76 VTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 135 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ DA V+ G I L+ E++++ L + ++K L+H++ Sbjct: 136 GDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 196 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAE 240 >gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] Length = 229 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDDK +A I L + V G +G+ + + ++D +I+D L ++ G Sbjct: 1 MHVLIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V+ LR +STPV ILS + ++D+V GL +G DDY+ KP+ EL+AR++A+ RR Sbjct: 61 SVIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRG 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ DL ++ + V G +I+L +E++++E L +T+ M L + Sbjct: 121 GEIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +P+ +IDV I +LR K+ I T G GY L + Sbjct: 181 WEYHFDPQTNVIDVHISRLRSKIDKDF-DPPLIHTERGAGYSLYDP 225 >gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159] gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159] Length = 225 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD L + L E F V V G++ + L D I+LD L + G Sbjct: 3 HVLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V++ LR A TP+ +L+ ++ED+V GL SGADDY+ KPF EL+ARIRA + R Sbjct: 63 VVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V DL ++ + L+ +E+ ++ LT+ L ++ Sbjct: 123 ASDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LR+KL A G I TV G GYVLRE+ Sbjct: 183 HDFDGYDSVLDVYIGYLRQKLE-AGGEPRLIHTVRGVGYVLRES 225 >gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 246 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L + V GE +E+ D ++LD+ L + GF V Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ L+ + +I ++V GL GADDY++KPF+ +EL ARI I+RR Sbjct: 64 CRRIRAE-SCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGPA 122 Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 123 PTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVPR 182 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 183 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232 >gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1] gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 248 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V G +L + F ++LDL L G Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIA 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + LR P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 75 ICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + ++ Sbjct: 195 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEEE 247 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVLYLRRKI--DTGEKRLLHTLRGVGYVLREP 239 >gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630] gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IE+ LK+E F VY G++ +E + D ILD+ L DI GF + Sbjct: 5 ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFHI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K P+ +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 65 CQKIR-EKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 123 AQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + N + + G + LT E+ ++ L + + E Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+K+ + +I+TVWG GY + + Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233 >gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 5/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I++ +DD+ + + LK + V GE I+ + D +ILD+ + + GF Sbjct: 1 MKIMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDIQMPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R S V IL+ +D+VRGL+ GADDY+ KPF+ +L+ARI+A++RR+ Sbjct: 61 EVCRQMRNETNSM-VLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRRAG 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + G ++++ V G ++ LT E +++ LL LT +M + Sbjct: 120 NVRGVAGTSTVTVGPITLDAMRHEVTRDGVKVRLTPTESRLLHLLITNTGQVLTTDMIIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + + ++ I LR+K+ + +I TV G GY E Sbjct: 180 RVWGYDETGDSGLVKTHIRHLRQKVEPSPNSPRFIMTVPGVGYTFTAPVAIEP 232 >gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E + +Y G++ +++ YE D +ILD+ + G EV Sbjct: 16 ILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 76 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 134 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 135 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 195 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 242 >gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 233 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A + + GE G+ + +D +++D L G Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRMLPRRDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 65 SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + +V QG I L +E++++E L +T+ M L +++ Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D +P+ +IDV + +LR K+ + T+ G GY++++ + Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDERAADA 233 >gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601] gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601] Length = 239 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 132/231 (57%), Gaps = 11/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + +++ L+ E++ + D G+D +++ Y++D I+LD+ + G Sbjct: 5 IKVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPGKDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R+A +TP+ +L+ ++V+G + GADDYI KPF+ E+V R++A++RR+ Sbjct: 65 EVCKEIRMA-KATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAS 123 Query: 121 GHAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G Q I +L+++ ++ V + G +++LT KEY ++ ++ ++ Sbjct: 124 GGEQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVL 221 E L ++ +++ ID + +LR+KL + + I TVWG GY L Sbjct: 184 EALLKEIWRYDFVGDLRTIDTHVKRLREKLYDISEEAGKMIVTVWGLGYKL 234 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K L + L E +V + G D +++ EFDA++LD+ L + GF Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D +RGL +GADDY++KPF+ EL+AR+RA+ RR+ Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S +V DL+++ + V IHLT E+ +++ L ++++ + +++ Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E +D FI LR+K+ + G I+TV G GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKV-DTQGHPKLIQTVRGFGY 218 >gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073] gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 7 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 67 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I DL +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 127 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 235 >gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5] gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A ++L L+ E + V + G +G+E ++LD+ L + G E Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR LR TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIRA +R++ Sbjct: 65 VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + DL VN + V + LT +E+ ++ + LT+E L+ + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I +RKKL + K I T+ G GY ++ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227 >gi|299542039|ref|ZP_07052358.1| two-component response regulator; MrsR2 protein [Lysinibacillus fusiformis ZC1] gi|298725462|gb|EFI66107.1| two-component response regulator; MrsR2 protein [Lysinibacillus fusiformis ZC1] Length = 240 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 10/235 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ LA+ +++ L+ E + +Y D + D I+LD+ L D G++ Sbjct: 6 ILVVDDEADLANLLKVSLQKEGYKQIYTASTIRDAWTSFQQTTPDIILLDVMLPDGEGYD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV +S + DK+ GL G DDYI+KPF+ +E+ R++A +RR+ Sbjct: 66 LCRRIR-EVSHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRAGY 124 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q I G +N D V G + LT KE ++ N L+KE Sbjct: 125 QTQDTITNIVEKTLQIGPFQLNADETEVHKNGVLLELTAKEIGLMACFMNNPNRILSKET 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + V I +LR+K+ A YI TV G GY + + Sbjct: 185 LFERVWGEDFFGSDNTVMVHIRRLREKIEEDASNPLYITTVKGLGYKFVMPKEAQ 239 >gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] Length = 228 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 M+IL+++D+ + + L N++V GE+ +++ + + IILD+ + + G Sbjct: 8 MKILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPKMDG 67 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +EV +R P+ +L+ D+++G + G D+YISKPF+ + L AR+ AI+RR Sbjct: 68 WEVCAEIR-RNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRV 126 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I G + ++ A V++ G +I L+ KE++++E K L++E LN++ Sbjct: 127 YSKDAGEIIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + ID + KLRKK+ YI+T+WG GY Sbjct: 187 WNYDYFGDARTIDTHVKKLRKKMGEKG---EYIKTIWGMGYKFE 227 >gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72] gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72] Length = 248 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD L + L+ + F V FD I+LDL L G Sbjct: 11 RVLLVDDDARLRELLSRYLQEQGFAVKAVVDAPMMDRALHREHFDLIVLDLMLPGEDGLA 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A+ P+ +L+ D++ GL+ GADDY+ KPFN ELVARI+A++RR Sbjct: 71 ICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQPH 130 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++V G + VNL + + G I LT E+ ++++L L+++ Sbjct: 131 SLPGAPTPEDEIVVFGRVRVNLGTRALTRDGEEIQLTTGEFSLLKVLLQHPRQPLSRDKL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + IDV + +LRK + + YI+TVWG GYV + Sbjct: 191 MELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVFVPD 240 >gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 242 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 107/226 (47%), Gaps = 2/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ LA I L L+S V + + + FD ++LD L+D G Sbjct: 15 RILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGLT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR S P +++ S D V GL+SGADDY+ KPF+ EL AR++A++RRS Sbjct: 75 LCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSAQ 134 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +L ++ + V + LT +E+ ++ L+ ++ L ++ Sbjct: 135 QAADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ I +LR KL+ ++TVWG GY A Sbjct: 195 GYSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKFAPPA 240 >gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519] gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii] Length = 228 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFEV 62 +++ED+ A+ + L LK E + V + GE IEL ILD+ L I GFEV Sbjct: 1 MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNANPDIKVAILDVMLPGIDGFEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR V +L+ + +DKV GL+ GADDYISKPF+ ELVARIR+++RR + Sbjct: 61 LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRRLTSN 120 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++NL + I LT KE++++EL +L+++ LN + Sbjct: 121 HIEEKQDVLKSGPFTLNLSDRKFYKGDEEIELTPKEFEILELFLKNAKKSLSRDQILNEI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++K++DV + ++RKK+ + +++TVWG GY E+ Sbjct: 181 WGKNYFGDLKVVDVNMRRIRKKIEDDPAEPRFLKTVWGYGYRWEEDG 227 >gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126] Length = 240 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+AR +A++RR Sbjct: 67 ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRSS 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+ +NL + + + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSKDVQIVEFGNYKLNLATREMTAGDTPLTLTSGEFAVLKSLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ L YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFVPDGE 238 >gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 251 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I++D L G Sbjct: 27 MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 87 SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 147 TPEQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 251 >gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 225 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + ++ + D +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G+DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIRKESEV-PIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +L+ N ++E +++ Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223 >gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 248 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +EL + D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++ + + V RI LTG E+ ++ELL R + L Sbjct: 130 SVAGIPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 237 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDDK + IE+ L+S+ + V+ G +G+++ + E I+D+ + + G Sbjct: 5 HILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREEIHLAIVDVMMPRMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR PV ILS S DK+ GL GADDY+SKPF EL+AR+ + +RR + Sbjct: 65 MTVKLR-EAYDFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYKK 123 Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + G L +N D V V + LT E++++ LL + Sbjct: 124 YMDMLEEKEQKEKSNVYSIGGLELNEDTVEVTVDEKPVKLTPIEFKILALLIKNPGRVFS 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +++ R I V + K+R+K+ Y++ VWG GY + + A Sbjct: 184 AEEIYERVWNERA-INTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEKQA 237 >gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] Length = 242 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I L ++ ++TV + I+LT EY ++ L++ KN T E Sbjct: 135 NQHAVQVIEKKINIRGLEIDEASRTVMLYRETINLTKTEYDILFLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 242 >gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51] gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 237 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + ++L + E F V D G+ + D +ILD+ L G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR A P+ +L+ D+V GL+ GADDY++KPF+ ELVARI+A++RRS+ Sbjct: 66 LCRRLR-AVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L + D + V V +T +E+ ++ L+ T+E L + Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + +DV I +LR KL++ Y++TVWG GY K Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFTPPVK 230 >gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 232 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 MR+L+++D+K + + + LK+E+++V G + ++L + D ++LD+ + G Sbjct: 1 MRVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL +R ++ PV L+ ++ DK+ GL +GADDY++KPFN E++ARI+++ RR Sbjct: 61 LEVLEEIRKQGLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRRQ 120 Query: 120 RGHAQSLI-------VTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + Q G +++ D+ TV G + LTG E+ ++ LL+ N + Sbjct: 121 QLLNQPPQAKDTSKVEVGSITIEKDSHTVTTLSGQDVQLTGSEFDILYLLATHLNQVFSA 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ ++P + + V + LR KL A G+ ++TVWG GY + Sbjct: 181 EDILQEVWPEGNKPSSQTVMVHVSHLRDKLEAATNGEKIVKTVWGLGYKIV 231 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + + + L+ + V G ++ ++ D I+LD+ L D+ GFE Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + PV L+G+ ++D+VRGL G DD+++KPF +E+ AR+RA++RR Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G + ++ DA V + LT E+ ++ L L++ Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ RDE ++D +I LR+KL I TV G GY L Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQS--LIRTVRGVGYQL 248 >gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 230 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D++ + ++ + E F + G + I++ Y ++LD+ + GFEV Sbjct: 5 ILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVMMPKKDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + P+ +++ D++ GL GADDYI KPF+ E++ARIRAI+RR Sbjct: 65 CREIR-QKSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDNS 123 Query: 123 AQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +N+ V+V G ++LT KE +++ LL+ +++ L+ ++ Sbjct: 124 NEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I +LR K+ + I+T+WG GY Sbjct: 184 GYEYFGDARTVDTHIKRLRAKIDISDKISWDIKTIWGVGYKFE 226 >gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4] gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +++E + V G++ + K D ++LD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS ++ DK++GL +GADDY++KPFN E++ARI++++RRS Sbjct: 61 NQVVKEVRKEMQL-PILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S G L + ++ V + G I LT E+ ++ LL+ N + + Sbjct: 120 NYMTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ K + V + LR K+ A GG+ I+TVWG GY + E Sbjct: 180 FERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIGE 228 >gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED+KA+A L+S F V + G+ G++ +D IILD+ L + G Sbjct: 1 MKSILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLPKLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI---- 115 FE+ R +R + PV +++ DK+RGL GADDY++KPF+ ELVAR++A Sbjct: 61 FEICRQIR-QTKNVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY 119 Query: 116 VRRSRGHAQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + +S G +++ ++ V + LT KEY ++ LL+ N KE Sbjct: 120 ERLTAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEE 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I +LR+K+ + YIET+WG GY + Sbjct: 180 LFERIWGLDSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGYRFK 228 >gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 230 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + IE LK E + V+ G+D I + D IILD+ + + G E Sbjct: 7 KILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R +T + L+ ++ G GADDYI KP LV+RI AI+RR+ Sbjct: 67 ACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILRRN 126 Query: 120 RGHAQSLIVTGDLSVNLDAKT----VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +L V G +I L KE++++ LL+ + T+E+ L Sbjct: 127 LQGEEETFSNKIEIADLVIDRDAFLVFKGGEKIVLAKKEFELLYLLASKPGKVYTREVIL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + IDV I KLR+KL + Y+ TV G GY Sbjct: 187 RNIWEDSVVVTNRTIDVHIRKLREKLKDN-----YVTTVKGVGYKFE 228 >gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] Length = 247 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 202 VWRYDFGGDVNVVESYVLYLRRKI--DTGEKRLLHTLRGVGYVLREP 246 >gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE+ + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRAKSNT-PIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q +V + +NL +V V + + KE +++ L+ N T+E Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR K+ + + TVWG GY Sbjct: 185 LLDQIWGYDYMGDTRTVDVHIKRLRAKIKDHPTWS--LGTVWGIGYKFE 231 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A IEL L++E + V G G+ + + +ILDL L + G EV Sbjct: 17 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 77 ARRIR-KTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 135 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ G Sbjct: 136 ITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVWPG- 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 195 YQGGSNVVDVYIGYLRKKLE-AEGERRLIHTVRGVGYVLRED 235 >gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2] gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 243 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + L E F+V + G+ L D I+LDL + G Sbjct: 10 KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPA 129 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G +L + ++ G + LT E+ M++ L L++E Sbjct: 130 QEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVFVPDG 241 >gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + G D +E Y+ + I+LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR ++ PV +L+ ++ D+V GL +GADDY+ KPF +EL+ARIRA++RRS Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131 Query: 122 HAQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + V +NL + V G R+ LT E+ ++E+ LT+E Sbjct: 132 AAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 191 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 192 QILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240 >gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ +L++ED+ + + LK E F G +E+ + D +ILDL L D+ G Sbjct: 1 MKTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLMLPDMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V ++R S P+ +LS S ++++GL GADDY+ KPF+ E+VAR+RAI+RR+ Sbjct: 61 EQVCVSIR-KTNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILRRT 119 Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +S G L ++ + V G I LT EY+++ +L+ T+ + Sbjct: 120 DDSQLLADRSSYNHGHLEIDSLKQMVFCHGEPISLTPNEYKLLLMLAKYPQRHFTRNELV 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E +V+ ID + +R K+ YI TV+G GY Sbjct: 180 DKVLGYDFEGDVRTIDQHVKNIRYKIEPDPKNPLYIRTVYGSGYRF 225 >gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196] gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291] gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196] gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IE+ LK+E F VY G++ +E + + D ILD+ L DI GF + Sbjct: 5 ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPDIDGFHI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K P+ +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 65 CQKIR-EKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 123 AQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + N + + G + LT E+ ++ L + + E Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+K+ + +I+TVWG GY + + Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233 >gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens] gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii ATCC BAA-894] gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2] gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance) [Serratia marcescens] gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1] gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894] gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2] gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDYETKLIQTVRGVGYMLE 222 >gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium sp. ORS278] gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L++E + V G++ K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ GD+ ++ + + V G I L EY+++E ++E L+ + Sbjct: 124 SPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227 >gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 227 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + L+S F G + + + IILDL L + GFEV Sbjct: 6 ILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLMLPGLDGFEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + P+ +L+ D++ GL+ GADDY+ KPF+ EL+ R+RA+++R Sbjct: 66 CKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKRHA 125 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V LSV+L A V + G + LT E++++ L LT++ LN + Sbjct: 126 PETEKRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLNSV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +D + +LR+KL IETV G GY +E Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLG---ACSRMIETVRGVGYRFKE 227 >gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A + L+SE ++V + GE+ + L D +ILD + + G EV Sbjct: 8 ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + PV +LS S D VRGL++GADDY+ KP++ EL+AR+R +RR R Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRIR 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A D++++ + V + L EY+++ L R +++ L+H++ Sbjct: 128 PAATGGQLCYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ G + I TV G GY L Sbjct: 188 GRDIFVDTRTVDVHIARLRKALTQHGGD-DPIRTVRGAGYAL 228 >gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 225 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L+ + L+ + V + GEDG L +DA++LDLGL ++ G Sbjct: 1 MRVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL I T+ G GY L + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGQD-----VITTIRGLGYALNDPE 220 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ + V G + E D II+D+ L D+ GF Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + LR A PV LS S EDK+ GL G DDY++KPF+ +E++AR+ AI R Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I GDL ++ ++ V ++G+ I L+ E++++ L N L+K L H++D Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I +R+KL+ + I T G GY++R Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSE-TIIHTKRGFGYIMR 249 >gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] Length = 251 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 90/234 (38%), Positives = 136/234 (58%), Gaps = 1/234 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K L +++ L +++V + G +G+ L + +D I+D+GL ++ G Sbjct: 1 MRLLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR K PV IL+ S +DKV GL++GADDY++KPF+ EEL+AR+ A+ RRS+ Sbjct: 61 ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G++ +N K V + I LT EY +E L+L K ++K HLYD Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 + + +I+V I +LRKKL I T G+GY L EN + T E E Sbjct: 181 QDFDLDSNVIEVLIGRLRKKLDPN-NIHKPIVTHRGQGYRLTENTAENTTEKTE 233 >gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD ++ + ++L+SE ++V V G + + L + D ++LD+ L + G Sbjct: 1 MRILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR P+ ++S + D + GL++GADDY++KPF L+AR++ +RR Sbjct: 61 SVCRLLREESDV-PIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQE 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L V S++L A V+ +HLT E+ ++ +L+ + ++E L ++ Sbjct: 120 NESEILKVADL-SIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ + TV G GY Sbjct: 179 YRHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGYR 218 >gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 113/221 (51%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++++L++E F+V+ G + + + + D +ILD+ + ++ G++ Sbjct: 3 KILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMDGWQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ KV+G Q G DDY+ KPF ELV R++A+++R + Sbjct: 63 LCRELR-EHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G+L +N V V L KE++++ ++ T ++E + ++ Sbjct: 122 ITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +DV I +LR++ I T+ G GY L Sbjct: 182 DFAGNERTLDVHINRLRQRFPEENHSFK-IRTIRGLGYRLE 221 >gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + IE LK E + V+V + G++ + K D IILD+ + + G E Sbjct: 7 KILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R +T + L+ S ++ G GADDYI+KP LV+RI AI+RR+ Sbjct: 67 ACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + GDL ++ +A V G+++ L KE++++ LL+ + T+E+ L Sbjct: 127 SPSEELSDNKLEIGDLVIDREAYLVFQGGNKVVLAKKEFELLYLLASKPGKVYTREIILK 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + IDV I KLR+KL Y+ TV G GY Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKLGE-----TYVSTVKGVGYKFE 227 >gi|225378771|ref|ZP_03755992.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM 16841] gi|225209363|gb|EEG91717.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM 16841] Length = 217 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD A+ + LK + V+ + GE +E+ K E +LD+ L G Sbjct: 1 MNILIVEDDTAIREGVAEFLKENEYEVFCAEDGEKALEILKSKEIHLALLDIMLPKKNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV +L+ ++ E +V+ + ADDYI KPF+ L+ RI A++R Sbjct: 61 EVLKELRT-FSELPVIMLTAVTDEETQVQTFDNLADDYICKPFSLILLLKRIEALLRARY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + V+ G +T KE +++ +L ++++ L+ ++ Sbjct: 120 KTENTWKYKD-AVVDFSGYRATYLGKDAAVTPKEIKLLAVLLENAGQVVSRDQILDRIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P +++DV++ LRKKL I TV G GY L Sbjct: 179 EEESPFDRVVDVYVKNLRKKLQLD-----CIITVKGVGYKLE 215 >gi|226323728|ref|ZP_03799246.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758] gi|225207912|gb|EEG90266.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758] Length = 228 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ +E ++ S + G D + + K + FD I++D+ L D+ GFE Sbjct: 4 KILIVDDDPAICKLLEKVMHSNELETTTVNCGMDALSILKNHTFDLILMDIMLGDMEGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ LR ISTPV I+SG + D + GL GADDYI+KPF L A+++A++RR++ Sbjct: 64 VIKRLRNQGISTPVMIVSGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G S + G + L+ KE ++ L TK+M H+ Sbjct: 124 LVLDNSDTLECGPFSYDTTTMRFYKNGEELILSSKESALLLLFMKHPQQVFTKDMIYEHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I V+I +LR K+ + YI T+ G GY Sbjct: 184 WGNTVAVDDNAIMVYINRLRGKIEDDRQNPAYILTIRGLGYRFVP 228 >gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] Length = 253 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 116/231 (50%), Gaps = 5/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD LA + L+ ++V+ G I L + D IILDL L I G + Sbjct: 20 RILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGRD 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V R +R S P+ +L+ S +D V Q GADDY+ KPF EL ARI A + R + Sbjct: 80 VCRLIR-KWSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +++ G L + D V +G +HL +E+ ++ L R T++ L+ ++ Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVWG 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDET 229 +++ +DV I ++R+ L G N I TV G GY A DET Sbjct: 199 QD-VVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRFVPELAAMDET 248 >gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + I+ L + +++VY G +E + D ++LDL L D G Sbjct: 1 MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ S +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ Sbjct: 61 TVCRKIR-EISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRRTE 119 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +L V D++ V + ++LT E+ ++ L N ++ + Sbjct: 120 TLSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTTTEFDILHALMSTPNKVFSRSDLIEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID I LR K+ N A YI TV G GY Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238 >gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ A + L F + GE + +FD +I+D L + G Sbjct: 1 MRVLIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR +TPV ILS + +++D+V+GL+SG DDY+ KP++ ELVAR+ A R Sbjct: 61 TLVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGP 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + GDL ++ + V G I L +EY+++E L +T+ M L +++ Sbjct: 121 TERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ G +ETV G GY++R+ + Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGQGKP-LLETVRGAGYMIRDERR 226 >gi|328542574|ref|YP_004302683.1| Two-component transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326412320|gb|ADZ69383.1| Two-component transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 228 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 171/227 (75%), Positives = 194/227 (85%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+EVL Sbjct: 2 LLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGYEVL 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LRV+K+ TP+ ILSG++ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+GHA Sbjct: 62 RTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSKGHA 121 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 QS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G D Sbjct: 122 QSVIVTGDLRVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMD 181 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 EPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE + Sbjct: 182 EPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLREPDMEAAA 228 >gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 234 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK +NF VY + G + + + + DA ILD+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L LR + PV L+ ++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N D V G I L+ E+ ++ L K L+K L++ Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGDTQLIHTVRGVGYVLRTP 232 >gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G + IE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CRIIRQSSDVHIFML-TAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 231 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 9/229 (3%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+ + + L+S+++ V+ + G E+ + IILDL L DI Sbjct: 1 MKQKNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLMLPDI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+ + +R P+ +L+ + + GL+ GADDYI+KPF +EL+AR++A++R Sbjct: 61 TGEEICKKIR-KTSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLR 119 Query: 118 RSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R+ + +L ++ V ++LT E+ ++ L T+E Sbjct: 120 RTSEELVPLFNKISFDNDNLIIDFGKDLVLKNQSPVNLTPTEFNILSALIKYPGKVFTRE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D I LR+K+ + Y+ T+ G+GY Sbjct: 180 ELIEFALGSEFEGFDRAVDSHIKNLRQKIEDNPRTPKYVLTIHGKGYKF 228 >gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L+ + F V G + +++ + +ILD+ + + G+ Sbjct: 5 KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ +L+ + +D+++G G D+YI+KPF+ + LVAR+ AI R + Sbjct: 65 QVCREVR-QVSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTN 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G + ++ A V + I L+ KE++++ + L++E LN+++ Sbjct: 124 VLFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL + +YI+T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGYKFE 223 >gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD + ++ +L E + V V + G G+++ + + +ILD+ + + G+E Sbjct: 4 RILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ ILS +E +V+GL GADDY+ KPF EEL+AR++A++RR Sbjct: 64 ICRRFRRE-NFIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ + L ++L + V G + LT KE+ +++L N LTK+ ++H++ Sbjct: 123 SAKVIQFAD-LKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++V++ LR+KL I TV G GYVLRE Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEE-GNRSRLIHTVRGVGYVLREQG 224 >gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231] gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19] Length = 232 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E FN G +E E D ++LDL L + G + Sbjct: 11 KILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMNGID 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ + D V GL++GADDYI+KPF +EL+AR+RA +RR+ Sbjct: 71 ICRLIR-QNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I DL++++ V I LT E+ ++ L+ + T+E L ++ Sbjct: 130 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R+ + ++++V + +LR K+ + TV G GY Sbjct: 190 RNASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 228 >gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPRMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+A+R++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R+++RR + Sbjct: 61 ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++D Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+V + +LR K+ + I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DEPFEPKLIRTVRGMGYVLEAPE 224 >gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R] gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ + + + LK + F V + G + +++ + + DA ILD+ + + GF Sbjct: 14 IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L LR + +PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 74 ELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 133 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N + V G I L+ E+ ++ L L L+K L++ Sbjct: 134 AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ I+TV G GYVLR Sbjct: 194 VWHYDFGGDGNVVESYISYLRRKV--DTQEPQLIQTVRGVGYVLRTP 238 >gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] Length = 243 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54 RILL+ED++ + L+ + F V + G+ +E+ + D ++LDL L Sbjct: 9 RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G V +R S PV +L+ + DK+ GL+ GADDY++KP++ EL+AR++A Sbjct: 69 PRLDGTGVCTRIR-RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RRSR A G + ++++ V V G + + +E++++EL LT+ Sbjct: 128 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 187 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L L+ E + K +DV I +LR ++ A I TV G GY L +++ Sbjct: 188 SQILERLWGPDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLDGDSE 242 >gi|313123384|ref|YP_004033643.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279947|gb|ADQ60666.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 241 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 17/239 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M+IL++EDDK+++ +EL K E + GE+ +E+ + + FD I LDL L Sbjct: 1 MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +++ S D+V GL GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GIQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPMALIARIKALHRR 120 Query: 119 SR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165 + T + ++ + V +R+ LT KE+ ++ ++ + Sbjct: 121 VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E L ++ E + +D I KLR+KL G I+TVWG GY ++ Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEK--SGPQIIQTVWGVGYKFDDS 237 >gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 236 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E ++V G + D I+LD L + G + Sbjct: 4 KILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCMLPRMNGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +++ S DKV GL+ GADDYI+KPF+ E++AR++A +RR Sbjct: 64 VCKKIR-QSSSVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRRMGF 122 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I G+ ++L + + G I+LT +E+++I L+ T+E L Sbjct: 123 VDQEQAIISSTIEFGEFIIDLRSFELRRNGCVINLTLREFELISFLAQHPGEVFTREQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDE 228 ++ +V+ +DV + + R+K+ YI T G GY E Sbjct: 183 ERVWGYEYYGDVRTVDVTVRRTREKIEGDTQNNYKYILTRRGVGYYFENPGATE 236 >gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD+ + + L++ F V + G + D ++LD+ + + G E Sbjct: 7 RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMPGLNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + E+++ GLQ GADDY++KPF+ +EL R+ +++RR+R Sbjct: 67 VCRRLR-QTSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRARM 125 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+L + + A+ + G + LT +E+ ++ ++ L Sbjct: 126 PRPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLEK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + + V + +LR+K+ + TVWG GY Sbjct: 186 VWGWDF-GDQSTVTVHVRRLREKIERDPAKPVRVATVWGVGYR 227 >gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ I E + V V G +G+ FDAI+LD L + G Sbjct: 4 RLLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLPGLDGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 +++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A+ R Sbjct: 64 LIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + V G I LT +E+Q++E RKN +++ M L ++D Sbjct: 124 AEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +P ++DV I KLR++L IETV G GY+ Sbjct: 184 YHFDPNTNVVDVHISKLRRQLDGDGADP-VIETVRGAGYM 222 >gi|134102881|ref|YP_001108542.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915504|emb|CAM05617.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F V G + + + D ++LDL L + G + Sbjct: 7 RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCKAIRTESVV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDA 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL++++ V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 EPAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 224 >gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ A+ ++ L F+V + + GEDG+ L + IILD+ L G+ Sbjct: 1 MRILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV LS + D+V GL+ GADDY+ KP+ EL+ARIR I+RR Sbjct: 61 SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L G + LT KE+Q++ L+ R+ L++ ++ Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LRKK+ + I+T+ G GYVL E A Sbjct: 181 INFDTDTNVVDVAIRRLRKKV-DDPFPVKLIQTIRGVGYVLDETA 224 >gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G++ +E + D +ILD+ L DI G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVMLPDIDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVT 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G++ V + V V G + LT +E+ + +L +E L Sbjct: 120 KREVPQNHEVIRAGEIVVCPKERKVHVNGEEVQLTYREFNLCKLFVSNPQRVFMREELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + +I+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLKASG---EHIKTIYGVGYKL 221 >gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612] gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ + I+ L+++ F V G +E D IILDL L G Sbjct: 3 KILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLMLPGKDGLT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R K PV +L+ S DKV GL+ GADDY++KPF+ +EL AR++A++RR+ Sbjct: 63 ICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLRRT 122 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S G L + + V G ++ LT KEY+++ L+ KN LT++ L+ Sbjct: 123 EMIKSSDTEEIAVGSLRILPGSFEVYKNGKKLSLTLKEYELLLYLANNKNKVLTRDQLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + +DV I LRKK+ + + YIETV G GY L EN Sbjct: 183 EIWGYEYYGETRTVDVHIRYLRKKIEDD--QEKYIETVRGVGYRLVEN 228 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +++DD+ + + L E + V + + G++G++L + D +ILD+ + + G+E Sbjct: 4 RIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A PV +L+ M ++D+V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 64 VCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKPD 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ D++++LD++ G RI LT KE+ ++ L LT++ ++ ++ Sbjct: 124 RQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V+I LR+K + K I+TV G GYVLR Sbjct: 184 GYDYSGESNVLEVYIAMLRQK-TEDGTAKRLIQTVRGTGYVLR 225 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ LA + L E + V D G +G++ FD IILD+ L + GFE Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L LR I TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR++ Sbjct: 64 ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +I G+LS+ + V + G + L KE++++ L R +T++ Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +N ++ + +DV + LRKKL IE++ G GY L Sbjct: 184 LMNIVWGFDYIGGQRTVDVHVSSLRKKLE-LGQQSVQIESIRGVGYKLV 231 >gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 117/220 (53%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ ++ L+++++ V+ G + + D I+LD+ + + G V Sbjct: 10 LLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVMMPALDGLAV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RALR A TP+ L+ ++ +D++ GL +GADDY+ KP++ EL ARIRA++RR+R Sbjct: 70 CRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRRTRDV 129 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL+++ + I + E+ ++ LL LT+E+ + ++ Sbjct: 130 GGDRLAFADLTLDEATRQGVRGSRVIQFSETEFALLALLVRNAGQVLTREIITDRVWGYD 189 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P +DV++ LR+KL G + TV G GY LR Sbjct: 190 FGPSSNSVDVYVRYLRRKLEAD-GEPRLVHTVRGIGYQLR 228 >gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +D+K + + K NF V GE ++ + EFD I+LD+ + GF+ Sbjct: 3 KVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ +K+ GL+ GADDYI KPF+ E++ARI AI+RR Sbjct: 63 VCRQVRT-FSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +L ++L+ TV++ I LT KE +++ L+ +N T+E L+ + Sbjct: 122 KNDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D I +LR KL N K I+T+WG GY Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGYKF 224 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + E D ++LD+ L D+ GF Sbjct: 15 RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++TP+ L+ + DKV+GL G DDY++KPF EE+VARIRAI+RR+ Sbjct: 75 VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTHA 134 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++ DA V G + L+ E++++ L L ++K L+H+ Sbjct: 135 TQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 194 Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227 ++ + I++ +I LR+K + A G I+T G GY+LRE + Sbjct: 195 WEYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYMLREPKGE 248 >gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A +E+ L S+ + V+ + DG+++ E ++LD+ + + G E+ Sbjct: 7 ILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIMMPGMDGMEM 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +LS S+ DK+ GL +GADDY++KPFN EL AR+++ +RR Sbjct: 67 CRKIR-ETNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRRYTQL 125 Query: 123 AQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V N D V V G I LT E+ ++ LL+ + + Sbjct: 126 NPNSAVNEKAGNEITIRGLIINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTDE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +LR K+ I TVWG GY + + Sbjct: 186 IFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235 >gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 225 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 115/222 (51%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +DD + + L++E + V+ GE+ L + ++D+ + + G+ Sbjct: 2 IHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNKDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R PV +L+ + DK RG G DDY++KPF EL+ RI+A++RR + Sbjct: 62 QLCEEIR-RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I + +++ + V+ G + L KE++++ L+ + T ++E + ++ Sbjct: 121 MVSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +DV I +LR++ ++ +G I TV G GY L Sbjct: 181 TDFDGDDRTVDVHIKRLRERFADRSGDFR-IRTVRGVGYKLE 221 >gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] Length = 235 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +E+ LKS+ + V+ G +G+++ + E I+D+ + + G + Sbjct: 5 HVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVMMPRMDGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTIKLR-EKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRK 123 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ + G L +N D V V G + +T EY+++ LL + E Sbjct: 124 FAEKLNQREASSSVYTIGGLEINEDTVEVTVDGESVKMTPMEYKILLLLMKNPGRVFSAE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ R I V + +R+K+ Y++ VWG GY + + A Sbjct: 184 EIYERVWNERA-VNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ L SI L+ + + G++G+ELC +D I+LDL L I G Sbjct: 1 MHILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R STPV ILS IEDKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G +S + + + + LT KE ++E L +N ++ E + H++D Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G I V I LRKKL A G + I+ G+GY+L E+ Sbjct: 181 GSVNSFSNSIRVHISSLRKKLRAALGN-DPIQNKVGQGYILMED 223 >gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + ++L + E F V D G+ + D +ILD+ L G Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR A P+ +L+ D+V GL+ GADDY++KPF+ ELVARI+A++RRS+ Sbjct: 66 LCRRLR-AVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L + D + V V +T +E+ ++ L+ T+E L + Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + +DV I +LR KL++ Y++TVWG GY K Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFTPPVK 230 >gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++D++ + + L+L+ E F+V G + ++L + FD ILD+ + + Sbjct: 1 MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EVL L + PV +LS + D+V GL+ GADDYI+KPF ELVAR+++++RR Sbjct: 60 GMEVLHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRR 119 Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ +T + LT E+ ++ L+ ++E + Sbjct: 120 AGSGPGMGGAEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ EV+ +D + LR+KL A + I+TVWG GY R Sbjct: 180 RIWGWDFPGEVRTVDTHVKNLREKLKQAGASPDLIDTVWGYGYKWR 225 >gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 269 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE+ + L + D ++LD+ L + GF V Sbjct: 26 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+R Sbjct: 86 CRRLRAE-SCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q ++ GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 145 SAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 204 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 239 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A PV +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ ++ G +NL + + G + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSTAEKVVSFGSYQLNLATRELSRDGDPVALTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ L Y++TVWG GYV + Sbjct: 186 MNLARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDG 236 >gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5] gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5] Length = 227 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + +D IILD+ L + G Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR + Sbjct: 61 TICRKIR-ETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + +I T ++N + V + G + LT KE+ ++ L + ++E Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKL A+ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227 >gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 234 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ++ ++ + +K E +V G + +E+ D +ILD+ + GFEV Sbjct: 5 ILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A+R IS P+ ILS + DK G + GADDYI+KPF ELV R + +R Sbjct: 65 CSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRSPQ 124 Query: 123 AQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 GDLS+++D + V V R+ LT KEY ++ L++ R N T++ Sbjct: 125 EAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFTRQ 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ ++ VFI KLR+K+ +I T WG GY + Sbjct: 185 QILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 236 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L ED+ +A +++ LK + F V D G+ E E+D I+LD+ + G Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR +TPV +L+ ++D+++GL GADDYI+KPF EEL+ARI A+VRRS Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ------------GHRIHLTGKEYQMIELLSLRKNTT 168 G +L+ G ++ +TV Q + LT +E+ ++E L Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 T+ L H++ P ++DV I +LRKK+ + G + +IE+V G GY R+ Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKI-DMKGNERWIESVRGVGYRFRQ 234 >gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1] gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis MR-1] Length = 241 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F I+LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ I G+ S++L + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 246 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 10/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 +RILL++D+ L +++ L+ E ++V V G G+ + D I+LD L D G Sbjct: 9 IRILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDFSG 68 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ + +R + ++TP+ +L+G I D+V L +G DDY+ KPF+ EEL+AR+RA+ RR+ Sbjct: 69 IDICQRIRSSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128 Query: 120 RGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G+LS+N + V I L+ KEY+++ L + LT+ Sbjct: 129 ITFSAINGDGPQPETLKVGNLSMNTSTRDVSRGDRLIQLSVKEYELLNFLMRGQGKVLTR 188 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++ + ++DV+I LR+KL + I TV G G++LRE +D Sbjct: 189 ADIMRGVWGENFYGDDNLLDVYIRYLRQKLESK-DLPTLIHTVRGVGFILREEIQD 243 >gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 238 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 15/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+++ + L+ E + V G IEL + + D ++LDL L +PG E Sbjct: 3 RILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR+ PV +L+ DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRRLRL-TSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREA 121 Query: 122 HAQSLIVT--------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + G + +++D TV+V+G + KE+ ++E+L Sbjct: 122 AVVAGAGAPAPVLDEEDGLLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGR 181 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LT+ ++ ++ + K +DV + ++R K+ + TV G GY L E Sbjct: 182 VLTRGQLIDRIWGSDYVGDTKTLDVHVKRVRAKIEADPANPTLLLTVRGLGYKLEE 237 >gi|325676260|ref|ZP_08155939.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552821|gb|EGD22504.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++DD + S+ L+ F + D G + DAI+LD+ + + G Sbjct: 9 RILLVDDDPKVLSSLTRGLRLSGFELDTADDGASALRAVSESRPDAIVLDVNMPVLDGVS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR P+C+LS S++ D++ GL++GADDY++KPF ELVAR+RA++RR+ Sbjct: 69 VVTALRAMGNDVPICVLSARSTVGDRIAGLEAGADDYLTKPFELGELVARLRALLRRAPR 128 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G L V+L + V + G RI LT +E+ ++E+L+ L++ L ++ Sbjct: 129 TPAPAGTVTVGPLEVDLPGRRVHMGGERIDLTKREFDLLEVLAENAGIVLSRVRLLELVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DVF LR+KL A G + TV G G+VLRE Sbjct: 189 GYDFDADTNVVDVFATYLRRKLE-AGGRPRVLHTVRGVGFVLREQ 232 >gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] Length = 231 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L + + V GE+ +++ + + D IILD+ + + G+ Sbjct: 11 KILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPKMDGW 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 E R +R P+ +L+ S D++ G + G D+YISKPF+ LVAR+ AI R + Sbjct: 71 EACREIR-KISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRRTN 129 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GD+ +N A V V+G I L+ KE++++ K L++E LN+++ Sbjct: 130 NIGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNNVW 189 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + ID + KLR KL YI T+WG GY N Sbjct: 190 NYDYFGDARTIDTHVKKLRNKLGECG---KYIVTIWGMGYKFEVN 231 >gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G+D +++ YE D +ILD+ + G EV Sbjct: 22 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRNGLEV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 82 CQEVR-ENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 141 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ K + V I LR KL G+ +I TVWG GY + + Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 248 >gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 774 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 117/222 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L + LK+ N+ V + GE G + +E+ +ILD+ L + G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+ S EDKV GL +GADDY+ KP EEL+AR+RA++RR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL++N + Q + LT KEY ++EL + + + HL+ Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I LR KL +A G IE V+G GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 2/161 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+ I DD + +E +L V + ++ + D +I+D+ + G + Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R P+ +L+ + E + ++GADD+ISKP EL+AR+ + + RS Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 R + + K+ E I + G+ Q + Sbjct: 607 RLWRNIAEIDTLTGIENRYKSTEDINRLIRIAGRHKQPLCF 647 >gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ LA ++ +L+ E V++ G G+++ ++D ILDL L D+ G Sbjct: 1 MAILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR A++ TP+ +L+ ++ED+V GL +GADDY+ KPF ELVAR+ A++RR+R Sbjct: 61 EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G DL+++L G I LT KE+ ++E L LT+ ++ + Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++D++I LR K+ I+TV G GY + Sbjct: 181 WQYDLDSLSNVVDIYIHYLRDKIDRGFDRP-LIKTVRGVGYKIE 223 >gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+K + ++++ L ++ + V+ G++ +E+ K + +++D+ + ++ G Sbjct: 4 ILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVLKEQDIHLVLMDIMMPEMDGIAA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + PV +L+ S DKV GL GADDYI+KPFN E+ AR+++ +RR Sbjct: 64 MVKIR-ETSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRRYMQL 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + ++ +K V + G +I LT EY +++LL + Sbjct: 123 GGGAIRKDVLSIGGIELDDRSKEVSLDGEKISLTRTEYDILKLLMEHPGEVFSPNQIYEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I LR+K+ Y++ VWGRGY + Sbjct: 183 VWQDNPYGTENTVAVHIRHLREKVEYNPAEPRYLKVVWGRGYKME 227 >gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 244 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L + L + V D G + D I+LDL + G Sbjct: 10 RILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMDSALQRDPADVIVLDLMMPGEDGLA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR TPV +L+ D+V GL+ GADDY+ KPF ELVARI A++RR Sbjct: 70 VLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRRLGP 129 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++N A TV +G + L+ +EY + L+ L++ + Sbjct: 130 DRTLARDEVLTVGPFTINFSAMTVAREGQPLVLSSREYALFAALARSAGRPLSRAQLIER 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + IDV + +LR+ + + ++ TVWG GYVL +NA+D Sbjct: 190 ALGRDAEVTDRAIDVQVARLRRAIGDDPSDPRHVRTVWGVGYVLADNAED 239 >gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704] gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DDK + +I++ L E + V GE+ +++ + D +++D+ + + G Sbjct: 5 KILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEKIDLLVIDVMMPKLDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +R + P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATLKIR-EANNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G LS+N D K V V G + LT EY ++ LL + + + Sbjct: 124 LGSTANHKNEAVYEVGGLSINDDLKEVTVDGGPVKLTPIEYNILLLLVKNQGKVFSIDQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 184 YESIWNEDAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 232 >gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 228 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED + ++ L + F+V + G+ G+ L ++ D I+LDL + G E Sbjct: 5 KILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMPGTDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ PV +L+ DK+ GL+ GADDY+ KPF+ ELV RI+AI+RR Sbjct: 65 VCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILRRY 124 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +A L L ++ +A + + G LT E++++ +L T++ L+ Sbjct: 125 GAPEPNAPKLWEREGLRIDFEAHQITIDGEETALTATEFKLLTVLVSGAGKVQTRDNLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D E + +D + +LR+KL A +IET+ G GY + Sbjct: 185 TVWDTHFEGYSRTVDTHVRRLRQKLGPYA---PWIETIRGVGYRFK 227 >gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ LA I L+ E F + V G G++ + + D I+LDL L + G EV Sbjct: 4 VLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMGTEV 63 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ S P+ +L+ D+V G + GADDY+ KPF+ EL+ R+RA++RRS Sbjct: 64 CRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRRSS 123 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G+L ++ + V V G + LT EY+++ L+ R ++E+ L ++ Sbjct: 124 EQTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +D + +LR KL +A I+TV G GY + E Sbjct: 184 WGYSYVGDTRTVDTHLTRLRTKLGSAG---ELIKTVRGFGYKIEEP 226 >gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 283 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + + LK+ F V G + + + D ++LD L + G E Sbjct: 32 RILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLE 91 Query: 62 VLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R +PV +L+ + ED+V GL +GADDY++KPF+ ELV R+RA++RR+ Sbjct: 92 VCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRT 151 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V G ++L A+ + G + LT +E+ ++ L ++ L Sbjct: 152 VPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRQ 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V + +LR+K+ + TVWG GY Sbjct: 212 VWGWE-IGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 254 >gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L+ F G + L + D ++LDL L D+ G + Sbjct: 4 RILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVDGAD 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R S P+ +L+ D++ GL+ GADDYI+KPFN E+VAR+RA++RR+ Sbjct: 64 LTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRT 123 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G L ++LD V I+LT E++++ +L T+ + Sbjct: 124 GGGSPVPPVILEAGRLRLDLDRHEARVADRTINLTPTEFELLRILLSHPGHAFTRRELIE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ID I LR+KL +AAG IETV+G GY L Sbjct: 184 QGPGYDYEGMERTIDSHIKNLRRKL-DAAGAGVRIETVYGVGYRL 227 >gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 223 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ LA + MLK E V + GE +L FD +ILD L G Sbjct: 1 MHLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR S PV +L+ +I+ K+ G ++GADDY+ KPF EL+AR+RA++RR Sbjct: 61 DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ K V G I L+ KEYQ++E LT E L H++D Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 EP ++ + LR+K+ AG I TV+G+GY Sbjct: 181 SGAEPNSNVVAAQVKLLRRKIDKDAGTA-LIHTVYGQGYRF 220 >gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD L ++ +L+ ++V + D GE + L K Y++D I+D+G+ + GF Sbjct: 1 MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R A IS P+ IL+ ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ Sbjct: 61 EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G +S++ ++ + + G + LT EY+++E L L ++K H+YD Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +I+VF+ +LRKKL + AG IET+ GRGY + N Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPAGDLKPIETLRGRGYRINRN 223 >gi|227529596|ref|ZP_03959645.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350495|gb|EEJ40786.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 238 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 15/240 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M+IL+IED+ ++ + + K E + G + E +E+D I+LDL L Sbjct: 1 MKILMIEDNHSVCEMMAMFFKKEGWQYEFAYDGVEAEEKFSAAPHEWDVILLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117 G +V +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ R Sbjct: 61 GMQVAADIRRISTTVPLIMLTARDSESDQVLGLEIGADDYVTKPFSPITLIARIKALQRR 120 Query: 118 ---------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 + + I T ++ + V + G + LT KE+ +++ L+ + Sbjct: 121 SQLSATQGAQHSNQDRFDIKTKHFKMDTKTREVYMYGKPVKDLTPKEFDLLKTLASKPRQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 T+ L ++D + + +D I KLR+KL G I+TVWG GY + + Sbjct: 181 VFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLEAV--GPQVIQTVWGVGYKFDDEGNE 238 >gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L+ F G + L + D ++LDL L DI G + Sbjct: 4 RILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDIDGAD 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + RA+R P+ +L+ D++ GL+ GADDYI+KPFN E+VAR+RA++RR+ Sbjct: 64 LTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRT 123 Query: 120 RGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G G + ++ D V V G ++LT E+ ++ + T+ + Sbjct: 124 SGGTPQPAVLLEAGRVRLDPDRHEVTVAGQPLNLTPTEFHLLRIFLSLPGHAFTRRELIE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + ID I LR+KL + G IETV+G GY L+ Sbjct: 184 EGVGYEYEGMERTIDSHIKNLRRKLESVDAGIR-IETVYGVGYRLK 228 >gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 222 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ ++ L+ E F V + G+ G+++ E+D +I+D + I G Sbjct: 1 MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMIPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A S P+ L+ ++ED V GL +GA+DYI KPF EEL+ARIR +RR Sbjct: 61 EVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRR-N 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G ++VN V + I LT KE+ ++E L+ K+ T+ + H+ D Sbjct: 120 NPESDAITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + IIDV+I LRKKL + +G N I+T+ G GY++RE+ Sbjct: 180 MHFDSDTSIIDVYINFLRKKL-DCSGCGNIIQTIRGVGYIIRES 222 >gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator [Escherichia coli ETEC H10407] Length = 226 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A TPV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDYETKLIQTVRGVGYMLE 222 >gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] Length = 229 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V V + G+ G++ F +FD +ILDL L + GFE Sbjct: 3 KILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRKVRAEKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G + T KE+ ++ L+ N TK+ Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228 >gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 237 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + + +LK E + +Y G L + + D I+LD+ L D G+ Sbjct: 9 KILIIDDEEDILKLLSTVLKREGLDDIYTAGDANSGYALFEKEDPDIILLDIMLPDGDGY 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R A + P+ +S + D+V G G DDYI+KPF+ +E+ R++A +RR+ Sbjct: 69 EICKRIR-AISNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTN 127 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + T G ++ V G + L KEY++ ++ N L+KE + Sbjct: 128 QRNEKYQDTIYELGPFKIDEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQISS 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ I V I +LR+K+ + +I G GY KDE Sbjct: 188 KVWGEDYIGFDNTIMVHIRRLREKIEDDPSNPKHIINKKGLGYKFV--IKDE 237 >gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp. oral taxon 137 str. F0430] gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp. oral taxon 137 str. F0430] Length = 235 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A L++ F+V ++ G++G + ++ ++LD+ L GF Sbjct: 3 KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + RA+R P+ ++S DK+R L GADDYI KPF+ EL AR++A + R Sbjct: 63 ICRAVRKELDI-PILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L + V V G +HL +E++++ L+ +KE Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++D + V + +LR+K+ +++TVWG GY A+ Sbjct: 182 DRVWDLEAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFNSEAQ 232 >gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 239 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD ++ + L + + V G + + D I+LD+ L D GF V Sbjct: 10 VLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGFAV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TPV L+ + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+ G Sbjct: 70 TRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGGP 129 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L + + TV G + L+ E++++ L L K L Sbjct: 130 APVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQE 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+D +I LR+K+ G I TV G GY LR Sbjct: 190 VWQYGFAGDTRIVDTYIKNLRRKI--DQEGPPLIHTVRGVGYCLR 232 >gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ A+ EL+LK E F V + G GI + D ++LDL L D G++ Sbjct: 3 KILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + V + + PV ++S DKV GL+ GA+DYI+KPF+ EL+ARI+ ++RR Sbjct: 63 L-CKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ G+L +N D K V+ G +I LT KEY ++E L R T++ L Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + +D+ I +LRKK+ + Y++T++G GY L ++ Sbjct: 182 EIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDS 231 >gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 233 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A + + GE G+ + +DA+++D L G Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVSDHASDGESGLFMASENAYDALVVDRMLPRRDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 65 SLISELRRRGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ A +V QG I L +E++++E L +T+ M L +++ Sbjct: 125 TPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D +P+ +IDV + +LR K+ + TV G GY+++++ E Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-EPPLLRTVRGAGYMIKDDRIAEA 233 >gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii ATCC 27126] Length = 224 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD L ++ +L+ ++V + D GE + L K Y +D I+D+G+ + GF Sbjct: 1 MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R A IS P+ IL+ ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ Sbjct: 61 EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G +S++ ++ + + G + LT EY+++E L L ++K H+YD Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VF+ +LRKKL + G IET+ GRGY + Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPTGELKPIETLRGRGYRI 220 >gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A + RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + V GDL V+ A+ V + + LT KE+ ++E L LR ++K L H++ Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E + I++V++ LR+KL I TV G GY L Sbjct: 181 DFAYEGDPNIVEVYVSALRRKLRA-----GLIRTVRGAGYRLE 218 >gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 261 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +DD + I L + + + G + +E+ + + D +ILD+ + + GF Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R +R K TP+ +L+ D+V GL+ GADDY++KPF+ E+VARIRAI+RR + Sbjct: 93 EACREIR-KKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V L+++LD + V V G ++ KE+ ++ L + ++E Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ IDV I K+R++L + I+TVWG GY ++ Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPY--DCIQTVWGIGYKFGVDS 261 >gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 241 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + + V + D ++LD+ + G Sbjct: 5 KILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMPGEDGLA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR PV +L+ D++ GL+ GADDY+ KPFN ELVARI++++RR Sbjct: 65 VVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHNA 124 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I G +++L + + Q + LT EY ++ +L+ +T+E Sbjct: 125 TPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMTREQ 184 Query: 174 FLNHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + G E + IDV I +LR+ L GG YI+TVWG GYV + Sbjct: 185 LMEMALGKGNGESLDRSIDVHISRLRRALDTDEGGPRYIQTVWGYGYVFVPDG 237 >gi|296268755|ref|YP_003651387.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091542|gb|ADG87494.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 225 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ ++ + D ++LDL L G + Sbjct: 4 RVLVVDDDAALAEMLGIVLRGEGFEPSFVYDGDKALDAFREIRPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +EL+ARIRA +RR+ Sbjct: 64 VCRRIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYIIKPFKPKELIARIRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GD+++++ +V+ I+LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PTPEILQIGDITIDVAGHSVKRGDQTINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 256 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 15/239 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ LA + L+ E V V GE ++L + + D +ILD+ L + G + Sbjct: 4 RVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLSGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN---------------KE 106 V R +R A TPV LS E++V GL+ G DDY+ KPF+ + Sbjct: 64 VCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRLEW 123 Query: 107 ELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 A R R L G G L +E ++ LL+ R Sbjct: 124 GQEAYFRRAERGVEVAPAGLSFGGHQVDFRTWNATLADGRVEPLGEREIGILRLLAERAG 183 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++++ L+ ++ G P + +D FI +LRK Y+ TVWG GY Sbjct: 184 EVVSRDEILDRVWGGDIFPSSRTVDNFIVRLRKLFEPDPAHPIYLHTVWGVGYRFTPEG 242 >gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium bovis AF2122/97] gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium bovis AF2122/97] gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 253 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 24 RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246 >gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 7 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A PV +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 67 ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 126 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +NL + + G + LT E+ ++++L L+++ Sbjct: 127 ELPGAPSAAEKVVNFGAFQLNLATRELSRDGEPMALTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ L Y++TVWG GYV + Sbjct: 187 MNLARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDG 237 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A I+TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ G Sbjct: 69 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 128 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ DA V G +I L+ E++++ L + ++K L+H++ Sbjct: 129 GEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 189 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 231 >gi|311896323|dbj|BAJ28731.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F + G+ + + + D ++LDL L G + Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPFFVADGDKALAAFRETKPDLVLLDLMLPGRDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL+SGADDY++KPF +ELVAR+RA +RR+ Sbjct: 64 VCRQIRAESGI-PIVMLTAKTDTVDIVVGLESGADDYVTKPFKPKELVARVRARLRRAEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PTPEQLTIGDLVIDVAGHSVKREGRGIPLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYK 221 >gi|226365094|ref|YP_002782877.1| two-component response regulator MprA [Rhodococcus opacus B4] gi|226243584|dbj|BAH53932.1| two-component response regulator MprA [Rhodococcus opacus B4] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+A+ S+ L ++V + G D +E DA++LD+ + + G Sbjct: 1 MRILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDALVLDVMMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 GHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + V I LT E+ ++E+L LT+ L Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V++ LR+K G + TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GETRLLHTVRGVGYVLRE 225 >gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G++ ++L K YE D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKD-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKD 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237 >gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 218 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L + + L+ F V G + + FD ++LDLGL + G Sbjct: 1 MRILLVEDDPELGDGLTVGLRQAGFAVDWLRDGNSADQALQSESFDFVVLDLGLPRLSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R P+ IL+ + DKV GL +GADDY+ KP + +EL ARIRA+ RRS Sbjct: 61 EVLNRARGRGQDMPILILTARDATGDKVSGLDAGADDYLVKPIDLDELTARIRALTRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G+LS++L A V + G I L+ +E+ ++++L LT+ LY Sbjct: 121 GRAAPLLTHGELSIDLAAHRVTLAGQEIELSSREFSLLQMLLESAGRVLTRTQLEQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DEP+ ++V I LRKKL + I T+ G GY Sbjct: 181 WHDEPDSNALEVHIHHLRKKLGS-----ELIRTLRGVGY 214 >gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3] gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3] Length = 223 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R A + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G + ++ + V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKKL IET+ G GY ++ A Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLGVD-----LIETIRGLGYRMQAPA 220 >gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ + I+ L + F+VY G + + D ++LDL L D G Sbjct: 1 MKILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLMLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ +L+ S ED + GLQ GADDY+ KPF+ +ELVARI+ ++RRS Sbjct: 61 TVCRKIR-ESSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRSE 119 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G+L + D++ V + ++LT E+ ++ L+ N ++ + Sbjct: 120 TLLNPNKLSINKGELLIYPDSRQVYLHQIELNLTTTEFDILYTLASTPNKVFSRGDLIEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID I LR K+ + NYI TV G GY Sbjct: 180 IKGIEFDGLDRSIDSHIKNLRHKIESDPKTPNYILTVHGTGYRF 223 >gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L S+ + + IEL + + D ++LDLGL + G E Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSGHE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR R + PV ILS + V+ L+ GADDY++KPF ELVARIR +R Sbjct: 67 LLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKFQ 126 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + TGDLSV+L + V+V+G + L+ KEY ++ +L LT L ++ Sbjct: 127 QQGEKPIFQTGDLSVDLVKRIVKVEGKEVKLSPKEYDILRMLVQHAGKVLTHHFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + V++ +LR+K+ + YI T G GY LRE Sbjct: 187 GDSTDVQ--YLRVYVRQLRQKIEKSPDQPRYITTETGVGYRLRE 228 >gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] Length = 231 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + SIE+ L++E + V+ G + +++ E I++D+ + + G + Sbjct: 4 ILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIMMPKLDGIKA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ ++S DK+ GL GADDYI+KPFN EL+AR+++ +RR Sbjct: 64 TIKIRQEKNI-PIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRRYMNF 122 Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 T G L +N K V+V G+++ +T EY+++ELL K + + Sbjct: 123 GNFNNETREDVLRSGGLELNTSTKEVKVDGNQVKVTPIEYRILELLLRNKGRVFSIDEIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 183 EKVWKEESFNVENTVAVHIRRIREKIEINPKEPRYLKVVWGIGYKIEK 230 >gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 229 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + +++E + V G++ + +ILD+ + + G Sbjct: 1 MKILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV+R +R PV ILS + DK++GL GADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIREVRKESQI-PVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L + D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 EHNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ +A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + I +LK + V G +E+ + FD IILD+ L I GF Sbjct: 4 KILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED++RG + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ L V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYLSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KLS YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLSID-----YIKTIRGVGYKIEK 221 >gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC 8739] gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] Length = 226 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A TPV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKI-DNDYETKLIQTVRGVGYMLE 222 >gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51] gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 225 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + + +LK F+ G + +E ++DL + ++ G+E Sbjct: 3 KIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV +L+ KV+G ++G DDY++KPF+ +EL+ R++A++RR R Sbjct: 63 LCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRRYRI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A I G ++++ ++ +V + G + KE++++ L T T++ L ++ Sbjct: 123 EASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ G I TV G GY L Sbjct: 183 DFDGNERTLDVHIGRLRERFPAEKSGFK-ITTVRGLGYRLE 222 >gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 230 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA ++L L+ E + V D G + I L +FD ++LDL + I GFE Sbjct: 6 RILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + ++ K + + + +++DKV+GL GADDY++KPF EEL+ARIRA +R+ Sbjct: 66 VCKRMKAQKDVAIIIL-TARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++V GDL ++ + V+ ++L+ KE+ +++ L+ L ++ LNH++ Sbjct: 125 DLEQIVV-GDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++DV+I LR K+ + + TV G GY L+ ++ ++ Sbjct: 184 DYYGSENVVDVYIRYLRAKI-DDPFENKILHTVRGVGYALKIDSNEKA 230 >gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 115/227 (50%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL++D+ + + L +E + V+ G +G+ K + IILD+ + ++ G Sbjct: 6 IRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ S +V G +GADDYI+KP + V++++A++RR Sbjct: 66 EACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVKALLRR 125 Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ G++ +N + + G + L KE++++ LL+ + N +E+ L Sbjct: 126 LKDEEAAAEDIVKVGNIVINREEYKIVNDGQELVLPRKEFELLSLLTSKPNKVFKREVIL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 186 DKVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 227 >gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G + IE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CRIIRQSSDVHIFML-TAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L ++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] Length = 230 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F V G+ + + ++ D ++LDL L + G +V Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + LR A S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLR-ATSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGEA 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ G + ++++ TV V G + + KE+ ++E L LT+ + Sbjct: 123 AEVDEEFEDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQLI 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 183 DRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKYE 229 >gi|225018069|ref|ZP_03707261.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum DSM 5476] gi|224949066|gb|EEG30275.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum DSM 5476] Length = 229 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + +L+ + F V G +G Y +D I+LDL L I G E+ Sbjct: 6 ILVVEDDPDINDLLCTILRRQGFQVTGAFSGSEGRMCIAQYNYDLILLDLMLPGITGEEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R A + PV ++S ++ DK+ L+ GADD+I KPF+ +E+ AR+ A +RR + Sbjct: 66 IGEIR-ATKTMPVIVVSAKTAQADKISLLRLGADDFIVKPFDVDEVAARVEAQLRRYKQF 124 Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L+ +L ++ DA V V G + LT +E+ ++ELL T+ + Sbjct: 125 SSGSSGNLLRYKNLVLDRDAVEVSVNGQSVSLTAREFAILELLLRYPKKVFTRANLFEQV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++V + LR KL+ A YI+TVWG G+ + E Sbjct: 185 WEEEFLGDDNTVNVHMSNLRSKLAKADPETEYIKTVWGIGFKMAE 229 >gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+++A + L++++F V E+ E + D +ILD+ + GF Sbjct: 6 ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R P+ LS S+ DK+RGL G DDYI K + E+VAR++A++RR + Sbjct: 66 CRRIRAK-SDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASN 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++++ G L++NL + + V G + LT KEY++++L + + L+ L+ Sbjct: 125 QPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DG + + V + +LR+K+ YI VWG GY Sbjct: 185 DG--VGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225 >gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] Length = 239 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 9/237 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L +I L+ E ++V V D GE +E F D +ILD+ L + GF+V Sbjct: 4 ILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLPGLDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ IL+ + D+V GL+ GADDY++KPF+ EL+AR++A++RR Sbjct: 64 CRQLR-EQSTVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVKALLRRRELL 122 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ L G L ++L+ + V +G + L +E+ ++ L+ + E Sbjct: 123 ARELAAGFSPDILEIGPLRIDLEQRRVWREGREVALKPREFDLLAYLARHRERVCRSEEL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++ + + + V + LR+KL + IETV G GY L + T Sbjct: 183 LRAVWGYDTFGDFRTLAVHVHGLREKLEDDPRRPRLIETVRGIGYRLTARSPQATRR 239 >gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+ AL+ + LK E F V + GE+ + L + + D ++LD L I G E Sbjct: 4 HVLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKISGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R R + P+ +L+ D++RGL +GADDYI KPF +EL AR+RA++RR Sbjct: 64 VCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A+ + GD++++ A V IHL E+++++ L ++E L+ + Sbjct: 124 RPGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +A G + I TV GY L Sbjct: 184 WGSDVYVEARTVDVHIGRLRKAL-SAGGEHDPIRTVRSAGYAL 225 >gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +A +EL L + V G+DG+ + + D ++LD+ + ++ GFEV Sbjct: 5 ILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELSGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 LR LR PV +L+ + DKV GL GA+DY++KPF EEL+ARIR ++R + Sbjct: 64 LRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTTQA 123 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + D+ ++LD + LT +E+ ++ L K LT+E LN ++ Sbjct: 124 AVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNRVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LRKK+ I+TV G GYVLRE Sbjct: 184 YDYFGETNIVDVYIRYLRKKM--DRSQSPLIQTVRGIGYVLREE 225 >gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A L+ F V V + GE G+E +FD +ILDL L + GFE Sbjct: 3 RILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICREVR-QKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + T D+ ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRFK 228 >gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] Length = 226 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+++LA + L+ E + V G + + L + I+LD L G Sbjct: 5 KILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLPGYDGLT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +++ S D L G DDYI+KPF EEL+ARIR I+RR Sbjct: 65 VLRRIR-QTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRINR 123 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +++L V G IHLT KE+ ++ L +++ LN ++ Sbjct: 124 EQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDLLNQIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +DV+I LR KL + +N I TV G GYVL E + Sbjct: 184 GYDFAGQTNTVDVYIRALRNKLGDY---RNLIRTVRGVGYVLGEQS 226 >gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype B'] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+K +A + L++E + V+ GE+G+++ + D ++LDL L + G Sbjct: 1 MNILIIEDEKRVADIVAKYLENEKYRVFTCYSGEEGLKVFLDEKIDVVLLDLMLPGMQGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 E+ + +R I S ++++KV G GAD+Y+ KP + E+VAR+ A Sbjct: 61 EICKKMREISNVYIFMI-SAKGTLDNKVGGFNLGADEYLVKPISPREIVARVNALKTRKE 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + G+L + + + V G I LT E+ ++ L+ +E ++ Sbjct: 120 RENNEELCIFDKGNLKIYPETRMVISYGKDIVLTPNEFDILYHLAKSPGRVFXREQLIDA 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + IDV I +RKK+ + +TV G GY Sbjct: 180 VMGIDXDGFDRTIDVHIKNIRKKIELDTKSPKFXKTVTGIGYKF 223 >gi|126665480|ref|ZP_01736462.1| response regulator DrrA [Marinobacter sp. ELB17] gi|126630108|gb|EBA00724.1| response regulator DrrA [Marinobacter sp. ELB17] Length = 233 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ A+A + + + + + G+DG+ + D ++LDL L + G V Sbjct: 5 VLIIEDNPAIAELVSMQVSDLGMAPVLANRGDDGLARFRQGGIDLVVLDLMLPGLDGLAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R A PV +L+ S+ D+V GL+ GADDY++KPF+ EL ARI+A+ RR Sbjct: 65 CREIRTAPDYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELGARIKALFRRVDAL 124 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I L ++ + V V + LT +E+ ++ + + ++ Sbjct: 125 SARATDAPENREIAVDGLRIDPLRRRVFVNNAEVELTAREFDLLWHFASHRGRVFSRAQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ + ++ I +LR K+ Y++TVWG GY ++ Sbjct: 185 LDAVWGYNHQGYEHTVNTHINRLRNKIETDPAEPRYVQTVWGVGYRFQD 233 >gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 255 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL D I+LD+ L + GF V Sbjct: 15 VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 75 CRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133 Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ G+L V+ + + V RI+LT E+ ++ELL + + Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 243 >gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 238 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ +A S+ + L E V VT G G+++ + E D +ILDL L DI G Sbjct: 11 HILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMV 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR + P+ +L+ ++++V+GLQ GADDYI KPF+ +EL+AR+ A+ R Sbjct: 71 VCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAGV 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ L+++ + + V + G ++ LT E+ ++EL T+E L+ ++ Sbjct: 131 SRPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + I++V + LR+K+ + + I T++G GY LR +DET Sbjct: 191 FTYVGDSNIVEVHMSNLREKIGDH--ERKLIRTIYGVGYCLRP--EDETA 236 >gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ +++ LK + F+V V G ++ + + D ++LD+ + + G Sbjct: 11 RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR I P L+ S+EDKV GL G DDY++KPF+ EE+VARI ++RRS Sbjct: 71 LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSGF 130 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I DL ++ + V G + L+ E+ ++ + L+K L+H+ Sbjct: 131 GQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +V +++ ++ LR+K+ G I T+ G GYVLRE Sbjct: 191 WHYDFGGDVNVVESYVSYLRRKV--DTGEPRLIHTLRGVGYVLREP 234 >gi|269957744|ref|YP_003327533.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306425|gb|ACZ31975.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 246 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 121/244 (49%), Gaps = 21/244 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 RIL++ED+++ + L E F+V G + IE + D ++LDL L + G Sbjct: 3 RILVVEDEESYRDPLTYQLAREGFDVVAAADGLEAIEKFEADGGIDIVLLDLMLPGLSGT 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---- 116 EV R LR+ PV +L+ + DKV GL+ GADDY++KP++ EL+AR+RA++ Sbjct: 63 EVCRRLRL-VSDVPVIMLTAKDTEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRA 121 Query: 117 ---------------RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 R ++ G + +++D TV V G + L KE+ ++ELL Sbjct: 122 PVAVDPSGRARPDDGRHGWEDDDGVLDVGPVRMDVDRHTVTVDGAPVALPLKEFDLLELL 181 Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LT+ ++ ++ + K +DV + +LR K+ G ++ TV G GY L Sbjct: 182 LRNAGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRAKIEPDPGTPRFLLTVRGLGYKL 241 Query: 222 RENA 225 ++ Sbjct: 242 ADSE 245 >gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 MRILLIEDD ++A I L+ ++V GE G+ L + E+D +++D L ++ G Sbjct: 1 MRILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ LR A +PV ILS + ++D+V+GL++G DDY+ KPF EL+ARI A++RR Sbjct: 61 LTIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQ 120 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++L A V G +L +EY+++E L +T+ M L ++ Sbjct: 121 KSSTSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV I +LR+K+ + TV G GY+LR+ Sbjct: 181 WEYHFDPQTNVIDVHISRLRQKIDKDFDQ-QLLSTVRGAGYMLRDPE 226 >gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ F + + +++ D ++LD G + Sbjct: 16 RILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPGGSGIQ 75 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + PV +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RR+ Sbjct: 76 LAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRRA 135 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + I L ++ + V V + + E++++ ++E L+++ Sbjct: 136 APTALEEPIDVQGLVLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + + I+TV G GY Sbjct: 196 WGTNVYVEDRTVDVHIRRLRKAVEP-SNHDRLIQTVRGAGYRF 237 >gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ + + L +E + V G E + D ++LDLGL D G Sbjct: 7 KILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDKPDIVVLDLGLPDTDGHT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R IS P+ ILS + VR L+ GADDYI KPF +EL AR+R R Sbjct: 67 LLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L G L+V+L + V++ G I L+ KEY ++ LL LT L+ ++ Sbjct: 127 QQGQKPLFQCGGLTVDLVRRIVKLNGEEIKLSPKEYDILSLLVQHAGKVLTHHFILSQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +++ +LR+K+ + +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228 >gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + + + L L++EN++V + G+ ++L + + ILD+ + I G+ Sbjct: 4 KILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIMMPKIDGYH 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV ILS + +K+ GL GADDY++KPFN E VAR+ + +RR Sbjct: 64 VLQQIRKE-SNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRRFYS 122 Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G+ L +N DA T++ I LT EY+++ELL TK+ Sbjct: 123 LGTKVVQEGNLAVRDLVLNQDACTLKKGDKIIQLTSVEYRIMELLMKHPGKVFTKQQIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H + I V I KLR KL + YI+T+ G GY L + Sbjct: 183 HGWGEDYIVADNNIMVCISKLRAKLDDNPSA--YIQTIRGLGYRLEK 227 >gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] Length = 229 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+ I L +V E + L K D ++LD L G ++ Sbjct: 5 ILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGSGIDI 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + LR P+ +L+ S +DK+ GL++GADDYI+KPF+ EL+ARI+A+ RR+ Sbjct: 65 AKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L ++ V G+ I L E++++ ++ L+ ++ Sbjct: 125 PQMTDDAVEVKGLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LR L A G I+TV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRSSLE-ATGHDGLIQTVRGTGYRF 225 >gi|254411491|ref|ZP_05025268.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181992|gb|EDX76979.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 362 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 128/235 (54%), Gaps = 1/235 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA +I L +N+ V + GE G++ Y +D I+LD+ L + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR A ++P+ +LS ++ +D V GL +GADDYI KP E L AR+RA++RR+R Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+L ++ V G + L+ KEY ++ LL +++ + L+ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 D P + + + LR+KL A G + IETV+G GY L++ + +T L Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVG-DIIETVYGFGYRLKDICELQTASKLNP 234 >gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51] gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A L+ F+V ++ G +G+ + EFD IILD+ L + G E Sbjct: 3 RILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L++++ PV ++S DK++GL GADDYI+KPF+ ELVAR++A + Sbjct: 63 ILKSMK-EDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIENYER 121 Query: 122 HAQSLIVTGDLSVNLDAK---------TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ + V V ++L KE+ ++ L+ N +E Sbjct: 122 LKERFNAGIKKRQSITIRGLKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVFGRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K YIETVWG GY R Sbjct: 182 ELFERIWGLESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRFR 231 >gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 220 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK + +E L V G + +D ++LDLGL + G Sbjct: 1 MRVLLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TPV +++ ++ D+V GL +GADDY+ KPF+ ELVAR RA+VRRS+ Sbjct: 61 ELLAWLRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I GDLSV+ T RI LT +E ++ L + L++ + LY Sbjct: 121 GRSTDTIEYGDLSVDPALMTATRGAERIALTSRECALLVELLSNQGRPLSRAQLQDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E I+V + LRKKL I T+ G GYV+ + Sbjct: 181 WNEEIESNAIEVHVSNLRKKLGAD-----LIRTIRGVGYVVEK 218 >gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 236 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + + L L+ +N +Y G D E+ + + D I+D+ + I G+ Sbjct: 3 KILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIMMPKIDGYH 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R K PV +LS S DK+ GL+ GADDYI+KPFN E+VAR++A +RR Sbjct: 63 LVKKIR-EKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + + G L +N T+ G I LT EY++I L TK Sbjct: 122 YHSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTK 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + I V I LR K+ N + YI+T+ G GY Sbjct: 182 KQIFEYVWDEPFYGDDNAIMVHISNLRDKIENDSKNPEYIKTIRGLGYKF 231 >gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIED+ LA + L+ F V + G+ G+ L + ++ D ++LDL L + G +V Sbjct: 4 VLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMDGLDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ D++ GL+ GADDYI KP++ ELVAR+RA++RR Sbjct: 64 AREIRRQSDV-PLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G+L V+LD TV+ I LT E+Q++ L + T+ L + Sbjct: 123 SGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I LR K+ +Y+ETV+G GY R+ Sbjct: 183 VAYEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRFRK 225 >gi|296138804|ref|YP_003646047.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026938|gb|ADG77708.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD ALA + ++L++E F+ V G + + + D ++LDL L + G + Sbjct: 7 RILVIDDDPALAEMLTIVLRNEGFDSMVVGDGTQALGAAREFRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VARVLRADSNV-PIVMLTAKADTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRTAD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ G++ +++ A V G + LT E+ ++ ++ + T+++ L ++ Sbjct: 126 EPSELLSIGNVIIDVPAHKVTRDGEVVPLTPTEFDLLVTMARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V I +LR K+ + T+ G GY Sbjct: 186 RHPADTRLVNVHIQRLRAKIEKDPENPEIVLTLRGVGYK 224 >gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 255 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L+ + + L+ E V G + + + D ++LD+ L D+ G Sbjct: 28 RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS Sbjct: 88 VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL ++ D+ V G +HLT E++++ L L+K L+ Sbjct: 148 AQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++++I LR+KL G I T G GY+++ Sbjct: 208 VWSYDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLIKP 253 >gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 235 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD + +E L E ++V G +E+ + Y + ++LD+ + + G E Sbjct: 12 RVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGIE 71 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R LR T + L+ S +V GADDYI+KP L++RI A+ RR Sbjct: 72 AGRQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRRE 131 Query: 120 RGHAQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A +N +V ++ L KE++++ L+ N ++E L Sbjct: 132 AQKADPGEQIQIADLLINRKNYSVSQNDKQVILPKKEFELLFFLAQHPNKVCSREELLQK 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + +DV I KLR+K+ + +I T+ G GY+ + + Sbjct: 192 IWGADIYVLERTVDVHIRKLREKIGD-----THIRTLKGVGYMFTDQPE 235 >gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] Length = 229 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQKIRNKVSC-PIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++L ++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R K + N+I TVWG GY +N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227 >gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] Length = 268 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + L+ + V + GE+ + + + D I+LD+ L + GF V Sbjct: 26 VLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 86 CRRLRAE-SCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL V+ + + V G+RI LT E+ ++ELL + + Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC 27755] gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC 27755] Length = 231 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DDK + +IE+ L + V G + +E+ K D +I+D+ + + G Sbjct: 3 KILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESVDLLIMDIMMPRMDGIR 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K + P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 63 ATLKIR-EKHNIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRRYMQ 121 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++++ G L++N D K V V G + LT EY ++ LL + + + Sbjct: 122 LGSTAIKESEAIYTVGGLAINDDLKEVTVDGEPVKLTPIEYNILLLLVKHQGKVFSIDQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + V I +R+K+ Y++ VWG GY + + Sbjct: 182 YENIWNENAVGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 231 >gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 242 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F + G +E+ + + D ++LDL L I G E Sbjct: 22 RILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGIDGIE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ + D VRGL+SG DDY+ KPF ELVAR+RA +R Sbjct: 82 VCRLIRAESDV-PVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPGDQ 140 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + D+++++ V RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 141 KTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 200 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 201 RHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGYK 239 >gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 226 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+++LA + +L+ E F+V + G + D ++LDL L + G +V Sbjct: 4 ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKRLR-AVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGET 122 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G + ++++ TV V G I + KE+ ++E L LT+ ++ ++ Sbjct: 123 IEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV I +LR K+ ++ TV G GY + Sbjct: 183 GADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED 226 >gi|254294576|ref|YP_003060599.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043107|gb|ACT59902.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 233 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 160/226 (70%), Positives = 192/226 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SI+LMLK+ FN+Y+TDLGE+G++L K YE+D IILDL L DI G+ Sbjct: 1 MRVLLIEDDDAVARSIDLMLKAAGFNIYITDLGEEGVDLGKVYEYDLIILDLSLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR+++I+TPV ILSG IE KV+ L GADDY++KPFNK+EL+ARI AIVRRS+ Sbjct: 61 EVLKQLRMSRINTPVLILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I TGD+ VNLDAKTVEV+ R+HLTGKEYQM ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVKNQRVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL A GG ++IETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLQKATGGDHFIETVWGRGYVLRDPSP 226 >gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 246 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 18/236 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++ +D++ + L+ E V+V + GE+ I L K + D ++LDL + + G EV Sbjct: 5 IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R TP+ +L+ D++ GL GADDY++KPF+ ELV R+ I+RR+ Sbjct: 65 CDLIR-QTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 123 AQ-----------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 ++ I LS+ + V V + LT KE+ ++ LL++ Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYP 183 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ LN ++D + + + V + +LR+K+ +I+TVWG GY L Sbjct: 184 GKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L+ E ++V G ++ + E D ++LD+ L D G E Sbjct: 22 RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V+R +R + S PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR Sbjct: 82 VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GDL ++ D+ V IHLT E++++ L L+K L+ + Sbjct: 142 HAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++++I LR+K+ G + I T+ G GYVL+ Sbjct: 202 WNYDFGGQDNIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKP 244 >gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33] Length = 651 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 123/228 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD L + L + ++ V V GE G +E+D IILD+ L ++ G Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R + P+ +L+ +I KV+GL +GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ GDL +N V G ++LT EY ++ELL + E L+ L+ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D P + + +LR KL A ++I T+ GRGY L+ + +E Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPSTEE 228 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD+ ++ +LK F V + + + DA++LD+ + I GFE Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + LR PV LS ++ + + G DDY+ KP Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPV 630 >gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 111/220 (50%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + I + LK E + V+ + G + + I+D+ + + G+E+ Sbjct: 4 ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNKNGWEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ EDKV+G Q G DDYI KPF+ EL+ R++A++RR + + Sbjct: 64 CKEIR-ELYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKIN 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G++ ++ ++ V + I KE+Q++ L+ +++ + ++ Sbjct: 123 TTNKVTIGNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWGSD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I K+RKKL+ I T+ G GY L Sbjct: 183 FEGFDRTVDSHIKKIRKKLNQQMAFD--ILTIRGLGYRLE 220 >gi|319950949|ref|ZP_08024821.1| putative two-component system response regulator [Dietzia cinnamea P4] gi|319435371|gb|EFV90619.1| putative two-component system response regulator [Dietzia cinnamea P4] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+A+ S+ L ++V + G + IE DA+ILD+ + G Sbjct: 1 MKILVVDDDQAVRESLRRSLTFNGYDVELAGDGVEAIERVDADRPDAVILDVMMPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR PV +L+ ++ ++V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 EVCRILRSRGDDLPVLMLTARDAVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRG 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ + DL ++L + V RI LT E+ ++ELL LT+ L Sbjct: 121 PDAEEVDEVLEFEDLRMDLATREVSRGERRIQLTRTEFSLLELLMHHPRRVLTRSHILEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V+I LR+K G I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRKTEGE-GESRLIHTVRGVGYVLRE 225 >gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ A+ ++ L F+V + + GEDG+ L +D IILD+ L G+ Sbjct: 1 MRILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV LS ++ D+V GL+ GADDY+ KP+ EL+ARIR I+RR Sbjct: 61 AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DL ++L GH + LT KE+Q++ L+ R+ LT+ ++ Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LRKK+ + I T+ G GYV+ E A Sbjct: 181 INFDSDTNVVDVAIRRLRKKV-DDPFPLKLIHTIRGVGYVIDEAA 224 >gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 231 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L + + GE+ + + + ILD+ L I GFE Sbjct: 4 KILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIMLPGISGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R T + ++S S DK+ GL+ GADDYI KPFN +EL+ R+++++RR Sbjct: 64 VCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRRVNL 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G ++++ +KT I +T E+ ++E K +T++ Sbjct: 124 NPTGSSNDDVKSLKDGPFTLDIYSKTFFKGDKEIDVTPTEFTILEYFIKNKGKAMTRDEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ +IETVWG GY + Sbjct: 184 MKETWGDNYSNDTKIVDVNIRRIRAKIEENPAKPEFIETVWGTGYRWK 231 >gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + ++ L L+ E F V GE + L FD ++LDL L + G V Sbjct: 5 VLMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 R LR PV +++ + ED + GL++GADDY++KP L ARIRA+ R Sbjct: 65 CRVLRSRGDL-PVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL V D +T G ++HLT E++++ L + +T+E LN ++ Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++DV I +LR+K+ + TV G GY + Sbjct: 184 DYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGYRI 223 >gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M21] gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ A+ ++ L F+V + + GEDG+ L + IILD+ L G+ Sbjct: 1 MRILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV LS + D+V GL+ GADDY+ KP+ EL+ARIR I+RR Sbjct: 61 SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L G + LT KE+Q++ L+ R L++ ++ Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++DV I +LRKK+ + I+T+ G GYVL E Sbjct: 181 INFDTDTNVVDVAIRRLRKKV-DDPFPVKLIQTIRGVGYVLDE 222 >gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217] gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 240 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQAP 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G+ S+NL + + I LT E+ ++++L L+++ Sbjct: 127 KVPGAPAQEEESVSFGEFSLNLATREMYRGEESIALTSGEFAVLKVLVNHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + A YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDATSPRYIQTVWGLGYVFVPDGE 238 >gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 232 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + +I++ LK+E VY G D + + + E I++D+ + + G + Sbjct: 6 ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKT 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS S DK+ GL GADDY++KPFN EL+AR+++ +RR Sbjct: 66 TFKIR-EKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124 Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G + +N AK V V G I LT EY+++E L + E + Sbjct: 125 SNYKINKEELKVGGIILNKIAKRVTVDGEEIRLTPIEYKILEFLMESIGQVFSIEQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I ++R+K+ Y++ VWG GY ++E Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231 >gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A +E+ L S+ + VY + E+G+ + + + ++LD+ + + G ++ Sbjct: 7 ILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIMMPGMDGLQM 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS S+ DK+ GL +GADDY++KPFN EL AR+++ +RR Sbjct: 67 CKKIR-ETNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRRYTQL 125 Query: 123 AQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V + N D V V G I LT E+ ++ LL+ + + Sbjct: 126 NPNSAVNEAVKNEIAIRGLTINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTDE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +LR K+ I TVWG GY + + Sbjct: 186 IFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235 >gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264] gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 223 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A L+ F+ + GE+G+ L K E+ I+LDL L I GF+ Sbjct: 3 RILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +++ DK+RG GADDYI KPFN ELVAR++A R Sbjct: 63 LCREMR-EFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121 Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++ D++ V G T KE+ ++ L+ + +KE Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RIWGYDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRFK 227 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 10/238 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ LA + L E F V D G G E +D I+LDL L + G + Sbjct: 4 RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L LR ++TP+ IL+ + + V+GL+SGADDYI+KPF EL+AR+ A++RR+ Sbjct: 64 ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S I G+L + + V + G I L KE++++ LS + LT++ Sbjct: 124 GDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPDS-VHIDSIRGVGYKLVVNKKRSAS 240 >gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] Length = 221 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + FD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V G I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNGKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 248 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 4/226 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ +L++ED+ + I L+ + V V G++G+ + + D ++LD+ + + G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 E LR R A PV L+ + DKV GL+ GADDY++KPF+ EL+AR+RA R Sbjct: 82 LEFLRRFR-ATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS 140 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ G+L ++ +T V+G R+ LT E++++ T+ L L Sbjct: 141 SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL 200 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IDV + LR K+ G IETV+G GY L + Sbjct: 201 -QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 31/249 (12%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ A+ + I L +E VY + G + L + ++ IILD L + G Sbjct: 3 RVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLPGLDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R+ + P+ +L+ + D++ GL+ GADDYISKPF+ EL+AR+RAI+RR Sbjct: 63 VCRRVRLNYLM-PILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILRRVDL 121 Query: 119 ------------------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154 + Q I+ G L ++ +A+ ++ G I LT +E Sbjct: 122 DQRLAQTLQQARTEPPVAQISPTITPTPVQPPIIRGPLEIDPNARIAKLHGESILLTPRE 181 Query: 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 Y+++ LL+ ++E L L+ + + +D + +LRKKL I TV Sbjct: 182 YELLILLASHPGRAFSREFLLQQLWGYDYDGFDRTVDTHVTRLRKKLGGVGEK---IVTV 238 Query: 215 WGRGYVLRE 223 W GY E Sbjct: 239 WSVGYRFVE 247 >gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5] Length = 234 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + + ++ + D G D + L K + D ++LD+ + + GF V Sbjct: 16 ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPHLDGFSV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R S P+ +L+ SS +DK++G + GADDY++KPF+ L+A+ A++RRS Sbjct: 76 CKMAR-EMSSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSSG 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G +++ + V V G + LT KEY+++ +++ LN ++ Sbjct: 135 KTDSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWGYD 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D I LR+KL + +I T+ GY E Sbjct: 195 FAGTTRTVDTHIKTLRQKLGD---ESRHIVTLIRSGYKFEE 232 >gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L +NF V GE+ +++ + + IILD+ + + G+ Sbjct: 13 KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV R +R P+ +L+ S D++ G G D+YISKPF+ + LVAR+ AI R Sbjct: 73 EVCREIR-KNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTG 131 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + +I G + ++ A V G + L+ KE++++ + L++E LN ++ Sbjct: 132 QNNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ID + KLR K+ + YI+TVWG GY + Sbjct: 192 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGYKFEVDE 234 >gi|163814295|ref|ZP_02205684.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] gi|158449930|gb|EDP26925.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] Length = 244 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 108/227 (47%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 +++L+++D++ + + + LK + V G + +E + + D I++D+ + + G Sbjct: 16 IKVLVVDDEQDIRTLLNIYLKRLGYEVVEAADGVEAVETVRANSDIDLIVMDIMMPKLSG 75 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E +R S PV L+ + D+ G DD++ KPF + + ++ A++RR Sbjct: 76 TEACEQIR-EFSSVPVLFLTAKTKEPDQNEAYVVGGDDFLPKPFTQNDFNRKVNALIRRY 134 Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + I G++S++ + V G + LT KEY ++ L + + E Sbjct: 135 RVYRGKSEVDAKNITVGNISIDSFKRIVTKNGEIVKLTDKEYALLFFLVEHRGKPWSLEA 194 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + P + V I +LR+K+ + + I T++G+GY Sbjct: 195 LYENIWQEKYLPSSSNTVMVHILRLRQKIEDNSAQPEIIRTIYGKGY 241 >gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 236 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DAIILD+ + + GF Sbjct: 11 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 71 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 191 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 235 >gi|104773776|ref|YP_618756.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513782|ref|YP_812688.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300812476|ref|ZP_07092902.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|103422857|emb|CAI97517.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093097|gb|ABJ58250.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300496537|gb|EFK31633.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325125438|gb|ADY84768.1| Response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 241 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 17/239 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M+IL++EDDK+++ +EL K E + GE+ +E+ + + FD I LDL L Sbjct: 1 MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +L+ S D+V GL GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GIQVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR 120 Query: 119 SR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165 + T + ++ + V +R+ LT KE+ ++ ++ + Sbjct: 121 VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E L ++ E + +D I KLR+KL G I+TVWG GY ++ Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEK--SGPQIIQTVWGVGYKFDDS 237 >gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 234 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK ++F VY + G + + + + DA ILD+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L LR + PV L+ ++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N D V G I L+ E+ ++ L K L+K L++ Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGETQLIHTVRGVGYVLRTP 232 >gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999] Length = 241 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L + F I+LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + + P+ +L+ D++ GL+ GADDY+ KPFN EL+AR +A++RR Sbjct: 67 ICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKSA 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ ++ +NL + + G + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSQAEQIVEFAHYKLNLATREMSADGKPMTLTSGEFAVLKSLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ L YI+TVWG GYV + D Sbjct: 187 MNLARGRDYGALERSIDVQVSRLRRMLEQDPTNPRYIQTVWGLGYVFVPDGSD 239 >gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + +I++ L E F V GE+ I+L D +I+D+ + + G Sbjct: 4 ILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRVDLLIIDIMMPVLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR + Sbjct: 64 TMKIR-ENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYKKL 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V GDL ++ + K V + G I LT EY ++ LL+ + + Sbjct: 123 GNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSIDEIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 QIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 230 >gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 228 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ I L+ E +V GE + L D ++LD+GL DI GFE Sbjct: 3 RLLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGLPDIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + TPV +L+ D+V GL+ GADDY+ KPF+ ELVAR RA++RR+ Sbjct: 63 VLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELVARARALLRRATL 122 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + Q H + L +E+ ++ L+ +++ L + Sbjct: 123 RTRPAEPSVPPSPLQIDQPRRRATFQNHMLDLRPREFDLLAFLARHPGQVFSRDTLLRQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LR KL+ + I+T WG GY E Sbjct: 183 WGQDGFLDERTVDVHVRRLRAKLAEVDPEADLIQTEWGIGYRFAE 227 >gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ + E V G D IE K +FD I++D+ + + GF Sbjct: 3 RILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIMMPRLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + ++ PV +LS DK+ G + G DDY++KPF+ +EL+AR+ I R ++ Sbjct: 63 SYKEIK-KIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++L + V V G +I LT KEY ++ L +N L++E LN ++ Sbjct: 122 TTNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D I LR + + + +I TV G GY Sbjct: 182 YDFFGDDRTVDTHIKMLRNSIKDY---RKFIVTVRGVGYKF 219 >gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis EAS054] gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] Length = 253 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 24 RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246 >gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D+ +A +I L+ E F V V GE+ + ++ ++LD+ + + GF+ Sbjct: 4 RILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMPKLNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L V +L+ + I DKV GL+ GADDY++KPF+ EL+AR A++RR Sbjct: 64 VCRRL-PTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLRRLEA 122 Query: 122 HAQSLIVTGDLS----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + D++TV G I LT KE+ ++ LL + + +++ L Sbjct: 123 GKAVEPAAGIEIGGLLIRTDSRTVTADGSAIELTPKEFDLLALLLGKPDRVFSRDELLEL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ E + +D+ + +LRKKL A ++TV+G GY Sbjct: 183 VWGIDYEGGTRTVDIHVQRLRKKLG--AQHAALLQTVFGVGYK 223 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+K + +E+ LK+E +NV+ GE +E+ E ++LD+ + + G EV Sbjct: 5 ILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + P+ +LS + DK++G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CRRVR-EKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + ++ V + + + LT +E++++ LL+ + + E Sbjct: 124 NTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR KL G I TVWG GY + + Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIEK 230 >gi|291302298|ref|YP_003513576.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571518|gb|ADD44483.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A+++ LK++ F V V GE G+E +F +DAIILD+ L + G+ Sbjct: 1 MRLLIVEDEQRMANALARGLKADGFAVEVAADGEAGLEAARFGSYDAIILDIMLPKLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVIRTLRRENNWVPVLVLSAKDGEYDQSDGLDLGADDYLTKPFSYVVLLARLRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDL+++ TV + I L+ +E+ ++E L +TK L+H++ Sbjct: 121 PARPSVLTVGDLTLDPARHTVHREDTEISLSTREFSLLEYLMRNAEQVVTKVTLLDHVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ V +++V+I LRKK+ + G++ ++TV G GY L + + Sbjct: 181 ASEDTHVNLVEVYIGYLRKKI-DTPFGRSSLQTVRGAGYRLTADRR 225 >gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34] gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34] gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34] gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34] gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in Cd(II), Zn(II), Co(II) resistance [Cupriavidus metallidurans CH34] Length = 225 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L F V + + G DG+ + + ++D IILD+ L + G+ Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++++R TPV L+ + + D+VRG + GADDY+ KPF EL+ARIR +R+S Sbjct: 61 TVIKSIRSK-SETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + V RI LT +E+ ++ LL R+ L++ + ++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV I +LR K+ + + I TV G GYVL Sbjct: 180 VNFDTDTNVVDVAIRRLRSKV-DDPFDQKLIHTVRGMGYVLDPE 222 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + L + V G++G+++ D +ILD + D+ G EV Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ + D+V+GL++GADDY+ KPF EEL+AR++A++RR+ Sbjct: 66 CKRLRSADNI-PILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRASPD 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ ++ DLSV+L + V+ I LT KE+ ++ LT++ L ++ Sbjct: 125 SRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWGFD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E E ++ V++ LR KL A G I T+ G GYVLRE+ + Sbjct: 185 MEVESHVVAVYVGYLRDKLE-AGGESRLIHTLRGVGYVLRESNE 227 >gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] Length = 229 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V GE+ + + D I+LD L ++ G EV Sbjct: 8 VLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R PV +LS S D++RGL++GADDY+ KP++ EL+AR+RA R Sbjct: 68 CRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRAR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + D+ ++ + V G + L E++++ + ++E L+ ++ Sbjct: 128 PAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L GG + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALGVHGGG-DPLRTVRGAGYAL 228 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEKDTYI-MMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + ++ +TV I LT +E+ ++ L N +T+E L Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDAIETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYVIRE 228 >gi|220905834|ref|YP_002481145.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219862445|gb|ACL42784.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 253 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA----------IILDL 52 ILL+ED++ + ++ L L E + V G +++ + +ILDL Sbjct: 21 ILLVEDEELIRETVSLALMEEGYEVITAADGRQALDILNARVLHSQAIDSAGLDLMILDL 80 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L I G ++ R +R + P+ +LS S D+V GL+ GADDY++KPF ELVAR Sbjct: 81 MLPYINGLDLCRLIRREGCTLPILMLSAKGSEIDRVVGLEVGADDYVTKPFGMRELVARC 140 Query: 113 RA---IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RA R ++ DL + V V+G ++L+ KE++M+EL Sbjct: 141 RALLRRQRAQTPPPVPILKFRDLQLYPQECRVLVRGQEVNLSPKEFRMLELFMSYPRRVW 200 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L+ ++ + K +DV I LR+K+ Y+ TV G GY Sbjct: 201 PREQLLDKIWGTDFVGDSKTVDVHIRWLREKIELDPSHPEYLLTVRGFGYRF 252 >gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 227 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A IEL L++E + V G G+ + + ++LDL L + G EV Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR Sbjct: 69 ARRIR-KTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVTPA 127 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ G Sbjct: 128 ITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVWPG- 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL G + I TV G GYVLRE+ Sbjct: 187 YQGGSNVVDVYIGYLRKKLEGI-GERRLIHTVRGVGYVLRED 227 >gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551] gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 136/238 (57%), Gaps = 9/238 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +++ L+ E++ V V G+ G+E ++D I+LD+ L + G E Sbjct: 4 KILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A++ TPV +L+ ++ DKV GL GA+DY++KPF EEL+AR+R+ +R Sbjct: 64 VLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRSL 123 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S DL++NL+ + V I LT KEY ++ L KN +T+E Sbjct: 124 VEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTREG 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L +++ E E +IDV+I LRKK+ + + I TV G GY+++E ++ E Sbjct: 184 ILTNVWGYEYEGETNVIDVYIRHLRKKV-DEGFSTSLIHTVRGVGYMMKEEKHEDHDE 240 >gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri 93-146] gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri 93-146] Length = 219 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F V G+ G+ +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFTVDWFTDGQQGMTALDSAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 61 EILRCWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++V I LR+KL + +I TV G GY L + Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGSH-----FIRTVHGVGYTLGD 218 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD+ + ++ L E F VY GE G+ K Y+ ++LD+ + + G E Sbjct: 4 RVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R L V + + + + DKV L GADDY+ KPF+ +ELVAR+RA++RR G Sbjct: 64 LCRRLHVLGDIAIIML-TARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTG 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L + +N + V G I LT +EY ++ LL LT++ L ++ Sbjct: 123 SQEMLSYSDL-ELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +++V + LR+KL A+GG I+T+ G GYVL+ Sbjct: 182 NADLETNVLEVHMGHLRQKLE-ASGGSRVIQTIRGVGYVLK 221 >gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185] gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550] gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W] gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550] gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185] gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM 15053] gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM 15053] Length = 233 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD+ + +I++ L E + V GE+ +++ + + D +I+D+ + + G Sbjct: 5 KILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKVDLLIIDVMMPRLDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + + P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATLKIR-EQNNMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +Q++ G LS+N D K V V G + LT EY ++ LL + + + Sbjct: 124 LGSTVSGDSQAVYEVGGLSINDDLKEVTVDGELVKLTPIEYNILLLLVKNQGKVFSIDQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +R+K+ Y++ VWG GY + + Sbjct: 184 YENIWNEDAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 232 >gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + + + E D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKE 129 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 NAAGIPNSGMIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V V E L + ++LDL L G Sbjct: 7 KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + LR + PV +L+ D++ GL+ GADDY++KPFN EL+ARIRA++RR Sbjct: 67 ICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRGV 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I G +NL + + + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSQDDQEITFGTYRLNLGTREMFDGDTPMPLTSGEFAVLKALVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ L YI+TVWG GYV + K Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLETDPAKPRYIQTVWGLGYVFVPDGK 238 >gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116] gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116] Length = 239 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L + YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L + V G + ++L E D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I + + + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 HVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+D++ + ++ L+ F+V V+ IEL + D ++LD L I G Sbjct: 1 MKILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGI 60 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++L+ +R + PV +L+ + +DK++GL GADDYI+KPF+ +EL+ARI ++RR Sbjct: 61 DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120 Query: 119 SRGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R +S V G++ +N D + V G ++ LT KE+++++LL + L ++ L Sbjct: 121 YRISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + +DV I LRKKL +N I+T+ G GY ++ Sbjct: 181 KVWGYEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKMK 226 >gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] Length = 232 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + + ++ +N+ V V G +G+ Y +D I+DLGL +I G Sbjct: 1 MRILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR P+ IL+ S +DKV GL++GADDY+ KPF EE+ ARI A++RRS Sbjct: 61 TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G L++N +K + + LT EY +E L+ ++K HLY Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +I+VFI +LRKK+ I TV G+GY Sbjct: 181 QDFERDSNVIEVFIGRLRKKIDPD-NQLKAIVTVRGQGYRF 220 >gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L + N V V G+ +E+ Y FD ++LD+ L DI G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR +K P+ +L+ + + E+ V GL SGADDY+ KPF EL AR+ A+ RR+ Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL +N AKTV+ G I LT KE++++ L ++++ L+++ Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + ++DV+I LRKK+ + I T+ G GYV++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKV-DKPFKTKLIHTMKGLGYVIKP 224 >gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G + + ++ DA++LD+ L D G E Sbjct: 24 RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGLE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+ Sbjct: 84 VLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRTTM 143 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 144 SVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 203 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++++I LRKK+ AG I T+ G GYVLR Sbjct: 204 WNYDFGGQANVVELYISYLRKKV--DAGRDPMIHTMRGAGYVLRP 246 >gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 M++L+++D+ + + L + + V G + ++ + + IILD+ + + G Sbjct: 4 MKVLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPRMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 +EV R +R P+ +L+ D+++G + GAD+YI+KPF+ + L AR+ AI+RR Sbjct: 64 WEVCRQIRKDSKV-PIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I G ++++ A V++ G I L+ KE++++ K L++E LN++ Sbjct: 123 YGVDSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + ID + KLRKK+ +YI+T+WG GY Sbjct: 183 WNYDYYGDARTIDTHVKKLRKKMGEKG---DYIKTIWGMGYKF 222 >gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa] Length = 238 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A + L L+ E V G+DG+ + +DA++LD+ L + G E Sbjct: 6 RVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ+ L+++ A+ + G R+ LT +E+ ++ + + ++ L Sbjct: 126 LAQNARLESGSLTIAGLAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 N ++ + E ++ I +LR K+ I TVWGRGY E + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKFAEAGE 236 >gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 236 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA ++ L+ + GE+ ++ + + + ++LD+ L I GFEV Sbjct: 6 ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIMLPGIDGFEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 R +R + P+ +L+ DKV G + G DDY+ KPF+ EL RIRA R Sbjct: 66 CRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+R + Q ++ +G + +++ + G + LT E++++ LL RK T+E+ L+ Sbjct: 126 RNRSNVQEVLRSGGIELDIGRHEATLDGRPLVLTLMEFKLLALLMKRKGQAQTREVLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++D + ID + +LR+KL +A +I TV G GY EN + Sbjct: 186 VWDVDKSINTRTIDTHVTRLREKLGDAG---RFIRTVRGLGYKFDENGDN 232 >gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae T7901] gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae T7901] Length = 238 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 2/225 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +LA I L + V V + G+ +EL + D ++LD+ L + GF+V Sbjct: 15 ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEKDGFQV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 R R A S P+ +++ S D++ GL+ GA+DY++KP L+ARI+A+ R Sbjct: 75 CREAR-AFYSKPILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRRTEMD 133 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GDL ++ +K+V++Q + I + E++++ LL+ ++++ ++ L Sbjct: 134 AAGHRLIFGDLVLDKKSKSVKLQNNTIPFSSNEFEVLWLLAESAGQVISRDDLVSKLRGI 193 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +DV +C++RKKLS+ I+T+ G+GY+ +A Sbjct: 194 EYDGFDRSVDVRVCRIRKKLSDDPSNPAKIKTIRGKGYLFAGDAW 238 >gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 219 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 128/220 (58%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED LA + L E + V GE+G L + +DA+ILDLGL I G Sbjct: 1 MRVLVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A IS PV IL+ + +KV+G+ +GADDY++KPF+ EEL+AR+RA++RR++ Sbjct: 61 TVLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I G + ++ V V G I LT EY+++ L RK +++ H+Y Sbjct: 121 GHASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + I+VF+ +LR+KL I+TV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----VIKTVRGLGYR 215 >gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 230 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+++LA + L+ + V G + + D ++LDL L + G E Sbjct: 4 RVLVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLALPGLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-----V 116 V R +R V +L+ S DK+ GL GADDY++KPF+ ELVARIRA+ Sbjct: 64 VCRQIRTFTDCY-VVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAMLRRPRA 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + QS G L V+L + V V + LT E+ ++ LS + +T L + ++ Sbjct: 123 AVAPAAEQSTRTVGGLRVDLAGREVYVDEQPVELTRTEFDLLAALSAQPDTALRRRQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++DV I LR+KL + G +I TV G GY + Sbjct: 183 AVWGADWVGDEHLVDVHIAHLRRKLGDDPAGPRFIRTVRGIGYRM 227 >gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 73 SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+ ++ ++ Sbjct: 133 STQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ + IETV G GY L Sbjct: 193 YAGDDRTVDVHIKRLRERFATTPD--FRIETVRGLGYRLE 230 >gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 217 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + PV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIRKKDDT-PVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ ++ A+ V V+G +I+LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KPNSNDILF----IDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I LR+KL + ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGYKFE 214 >gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK LA IE +L+ E V V GE G+++ +D ++D L G Sbjct: 1 MRILIVEDDKRLARLIERVLREERHTVDVAHDGESGLDMLLQGVYDVAVIDWMLPGRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA R A++ T + +L+ IEDK+ G +SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SLCRAARAARLPTALLLLTARGQIEDKMLGFESGADDYLVKPFAFEELLARVRALGRRFN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G + ++L + T R+ LT E++++E L TLT++ L++++ Sbjct: 121 PNLGNDELRIGTIVLDLRSYTARRGERRLDLTPTEWRLLEYLMRNAGQTLTRQQILDYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++DV++ LR+KL NA G + I TV G GY L Sbjct: 181 SFEHDVQPQMVDVYVSYLRRKL-NAPGEADPIVTVRGIGYRLEAE 224 >gi|271962953|ref|YP_003337149.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506128|gb|ACZ84406.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ ++ + D ++LDL L G + Sbjct: 4 RVLVVDDDAALAEMLGIVLRGEGFEPSFVSDGDKALDAFRDTRPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRRIRAESGV-PIVMLTAKSDTIDVVLGLESGADDYIVKPFKPKELVARVRARLRRTDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GD+++++ +V+ I+LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PTPEILQIGDITIDVAGHSVKRDEETINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 ++L++ED+ + + + LK + + GE+ + + +LD+ L D+ GF Sbjct: 3 KVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R +R + + +L+ + DKV GL +GADDY++KPF+ EL ARI A+ RR+ Sbjct: 63 EVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRTG 122 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I +N +T+E G R+ LT EY +++L + L++E L+ Sbjct: 123 GAEKESSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEILDT 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E+KI+DV I +LR K+ + YI TVWG GY Sbjct: 183 VWGRDYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGYKW 226 >gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 237 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I L+ E ++V + + G++ I + + + D ++LDL L + G ++ Sbjct: 9 ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGIQI 68 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + P+ +L+ S D+V GL+ GADDYI+KPF+ EL+ARIRA++RRS Sbjct: 69 CKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRRSE 128 Query: 121 GHAQSLIVTGDLS--------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S ++++ TV + G + LT KE++++++LS + L++ Sbjct: 129 SKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLSRN 188 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ ++ E + +DV I LR+K+ + YIET+ G GY ++ Sbjct: 189 LLLDEIWGYEYFGETRTVDVHIRHLRRKIGDDKSN-EYIETIRGIGYKMK 237 >gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 235 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L++E + V G++ K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ GD+ ++ + + V G I L EY+++E ++E L+ + Sbjct: 124 SPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227 >gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK +A + LK++ F V GE + +D ++LDLGL G Sbjct: 14 MRILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGV 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 74 DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL + I V G GY++ + + Sbjct: 194 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 233 >gi|258507998|ref|YP_003170749.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|257147925|emb|CAR86898.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259649325|dbj|BAI41487.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 243 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 123/245 (50%), Gaps = 19/245 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+ ++A + + + E + V GE+G+ K FD I LDL L + Sbjct: 1 MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +L+ + D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120 Query: 119 SRGHAQSLIVT--------------GDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163 + A++ ++ + + G +I LT KE+ ++ LS Sbjct: 121 AEVGAEAGAEQAAPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E L ++D + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 SPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 238 Query: 224 NAKDE 228 + D+ Sbjct: 239 SGLDQ 243 >gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L ++ V + G DG+ L D I+LD+ L + GF Sbjct: 1 MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R K + P+ +L+ ++ED+VRGL+ GADDY+ KPF EL+AR++A++RR R Sbjct: 61 GILAAVRARKNT-PILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L ++ + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 120 AQEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + +IDV + +LR KL + + TV G GYVL + + Sbjct: 180 MNFDSDTNVIDVAVRRLRSKL-DDPYDTKLLHTVRGMGYVLESRGQAQPT 228 >gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp. subtilis str. 168] gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp. subtilis str. SMY] gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp. subtilis str. 168] gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ycbL gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp. subtilis str. 168] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + L Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122 + +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ + Sbjct: 61 KIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+DD+ L + L+ F V DG+ K D +ILD+ L D G Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D++ GL+ GADDY+ KPF ELVARI+A++RR Sbjct: 77 VCREVRADSRI-PIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L VN ++V + + LT E++++ L+ + ++++ L+ Sbjct: 136 DDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRGI 195 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID+ + +LR+KL + +I TV G GY Sbjct: 196 DWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235 >gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + +++E + V G++ + +ILD+ + + G Sbjct: 1 MKILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV+R +R PV ILS + DK++GL GADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIREVRKESQI-PVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ I G L + D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 EHNVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ +A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1] gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32] gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR [Shewanella putrefaciens 200] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTL 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ I G+ S++L + + I LT E+ ++++L L+++ Sbjct: 127 EVPGAPAQQEAEISFGEFSLDLATREMYHGDEAIALTSGEFAVLKVLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 237 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 14/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E F + GE+ ++L +E + ++LDL L I G++ Sbjct: 6 RILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELR-ASSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSLIVTGDLSV-----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S NL +V GH I + KE +++ L+ N T Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L+H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHDKWA--LTTVWGIGYKFE 234 >gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 273 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 47/271 (17%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ ++ + L+ + V D G E+ + ++D IILD+ L + G + Sbjct: 3 HILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKYDFIILDVMLPGMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ DKV GL+ GADDY++KPF+ E++ARI+AI+RR+ Sbjct: 63 ICRKVRKKGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILRRTGS 122 Query: 122 HAQSLIVT-----------------------------------------------GDLSV 134 IV G+L + Sbjct: 123 QNDLNIVDLDEEETMEVRDNDNFGLELDQIRHNYENTLAKGAESPVTQESRLIKVGELEI 182 Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194 + V V ++ +T KE++++ + R+ L++E LN ++D E +I+DV I Sbjct: 183 YPEHYEVRVNHKKVDITPKEFELLVYMVTRRGRILSREQLLNSIWDFDYVGETRIVDVHI 242 Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LR+K+ + YI+T+ G GY Sbjct: 243 SHLREKIEDNNRHPKYIQTMRGFGYKFEVPE 273 >gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7] gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7] Length = 236 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 13/233 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A +IE+ LKS+ +NVY+ + G+ G+E+ + Y+ I+D+ + + G E+ Sbjct: 6 ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMPVMDGIEM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ LS S DK+ GL G DDY++KPF EL+AR+ + +RR + Sbjct: 66 TMKIR-ENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHKY 124 Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + V G L ++LD K V V G + +T E +++ELL + + Sbjct: 125 LNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFSS 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++ + + V + LR+K+ Y++ VWG GY + + Sbjct: 185 EQIYENVW-HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEKQ 236 >gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L+++ F V + GE+ + L D I+LD L ++ G EV Sbjct: 8 VLLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA+ R Sbjct: 68 CRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRSR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PSAVGERLEYEDIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L GG + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALCQHGGG-DPLRTVRGAGYAL 228 >gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 227 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ L + L+ + V GE+G L + +D IILD+GL G Sbjct: 1 MRLLIVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAYLGETEPYDCIILDMGLPKQDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A++ TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G + LT EY+++ L +++ HLYD Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKKL+ I+TV G GY++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDP 218 >gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 257 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 15/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL + D ++LD+ + + GF V Sbjct: 15 LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDGFAV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR--------- 113 R LR + P+ LS + +I +KV GL GADDY+SKPF+ +EL ARI Sbjct: 75 CRRLRAE-SAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVGR 133 Query: 114 ---AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + R ++ GDL V+ + + V G RI LT E+ ++ELL + Sbjct: 134 GTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVVP 193 Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 194 RAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244 >gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 238 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DAIILD+ + + GF Sbjct: 13 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+R Sbjct: 73 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 193 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 237 >gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 235 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +++ LKS+ FN G + I L + + D IILD+ + ++ G E Sbjct: 6 ILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVMMPNLNGIET 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 66 CLKIR-EIKEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRRFHMF 124 Query: 123 AQSLIVTGDLSVN----------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ + N L+ V + + + LT E+ ++ LL+ + + E Sbjct: 125 GKNTNMLEVEEENIIQIEDLKIKLETHEVLLGDNIVKLTPTEFDILSLLAQSRGKVFSIE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ +I+TVWG GY + + Sbjct: 185 NIYESVWNQEFMTSDNTVMVHIRKIREKIEENPRNPRFIKTVWGVGYKVEK 235 >gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + DG+ + + I+LD + G + Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ PV +L+ EDKVRGL++GADDYI+KPF+ +EL AR+ A++RR Sbjct: 64 FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRV 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I L ++ + V + + + E++++ ++E LN++ Sbjct: 124 SPTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEE-TGHDRLIQTVRGAGYRF 225 >gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator, winged helix family protein [Actinobacillus minor 202] gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator, winged helix family protein [Actinobacillus minor 202] Length = 232 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 5/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L F V + G DG+ ++ IILD+ L + G+ Sbjct: 1 MKILVVEDEIKAGDYLKQGLSEAGFMVDIARNGVDGLHFALTEDYQLIILDVMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A+ P+ +L+ +EDKV+G + GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QVLQMLRQAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLLRRIP 120 Query: 121 GHAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + T +L+ + V GHRI LT KE+ ++ELL R+ L + + + Sbjct: 121 NEEKKIQTTSLKIADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPRMLIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 H++D + + +IDV I +LR K+ + + I TV G GYVL +D+ Sbjct: 181 HVWDMNFDSDTNVIDVAIRRLRNKI-DDSYTPKLIHTVRGVGYVLDLREEDD 231 >gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +I++++D+ + ++ LK ++F V GE+ +++ K II D+ + I GF Sbjct: 5 KIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPKINGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V++ +R P+ +L+ D++ G G D+YISKPF+ + LVAR+ AI R + Sbjct: 65 DVVKEIR-QYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSN 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + +++ A V + G I L+ KE++++ + + L++E LN+++ Sbjct: 124 NLSTGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + ID + KLR KL YI+T+WG GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGYKFEVD 225 >gi|212709975|ref|ZP_03318103.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM 30120] gi|212687384|gb|EEB46912.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM 30120] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F + G+ G + +DA++LDL L I G Sbjct: 6 MRILLIEDDRLIGDGLKVGLTQLGFTLDWFMDGKQGQQALFDAPYDAVVLDLSLPHIDGM 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 66 DILKFWRKQGRDEPVLILTARDALEQRVNGLQQGADDYLCKPFALAEVAARLQALIRRRS 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +V GD+ ++ A TV QG + L GKE ++ L L++ LY+ Sbjct: 126 GQLSPTLVHGDVEMDPLAMTVTYQGKPVQLKGKELALLSLFLHNPKKVLSRSAIEEKLYN 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V I LR+KL + +I+TV G GY L + Sbjct: 186 WDEEVSSNSVEVHIHHLRRKLGS-----KFIQTVHGIGYRLGDEE 225 >gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + L+S F G D + + IILDL L + GFEV Sbjct: 6 ILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLMLPGLDGFEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ + P+ +L+ D++ GL+ GADDY+ KPF+ EL+ R+RA+++R Sbjct: 66 CKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKRHA 125 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V LSV+L A V + G + LT E++++ L LT++ LN + Sbjct: 126 PEQERRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLNSV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +D I +LR+KL IETV G GY +E Sbjct: 186 WGYEFEGYARTVDTHIRRLRQKLG---SCARMIETVRGVGYRFKE 227 >gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 232 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+++EDD +A +EL L+ E+++ + G + L + ++D ++LD+ + + G E Sbjct: 3 KIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR R+ TPV +L+ +S+ DKV GL GA+DYI+KPFN EEL+ARIRA +R Sbjct: 63 VLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGAL 122 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + N + V G I LT +E+ ++ L K L +E Sbjct: 123 HTGKSENSKKHEYALADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LN ++ + ++DV+I LRKK+ + I TV G GY ++E Sbjct: 183 LNEVWGFEYAGDTNVVDVYIGYLRKKI-DHGHETALIHTVRGVGYTMKE 230 >gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G++ ++L K YE D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKD-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237 >gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ F + + ++L D ++LD G + Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R + P+ +L+ EDKVRGL+ GADDY++KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRRS 123 Query: 120 RGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + + V V + + E++++ ++E L+++ Sbjct: 124 SPTSLEEPIDVQGLMLDPISHRVTVGEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + + I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEP-SNHDRLIQTVRGAGYRF 225 >gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649] gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649] Length = 247 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++EDD +A I L+ E + V ++ G ++ + ++ D ++LDLGL G EV Sbjct: 22 LVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGLPGQDGIEVC 81 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ + D + GL GADDY++KPF+ ELVAR+RA+ RR R Sbjct: 82 RQLRTFSDAY-VVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPRPID 140 Query: 124 QSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L+++ + V + + LT E+ ++ +LS R ++ ++ + Sbjct: 141 GANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLIDQV 200 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G + ++DV I LR+KL + AG +I TV G GY + Sbjct: 201 WGGTWVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGYRM 243 >gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] Length = 223 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G++ ++ + +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE-PNVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVM 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H G+L + + V V G I LT +E+ + +L + K ++ L Sbjct: 120 KHGVPKDDKVIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASNKQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + +I+T++G GY L Sbjct: 180 KVWGFEYSGNTRAVDIMVQRLRKKLGASG---EHIKTIYGVGYKL 221 >gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 220 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ ED+ +A +E L++ F V G +FD +ILD+GL + GFE Sbjct: 3 RVLIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR +++ PV IL+ S++D V L+ GADDY+ KPF EEL+AR+R + R Sbjct: 63 VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVRLRLSGGRQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ GDLS++L + + + L+ +E+ + E L +E L+H++ Sbjct: 123 TETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P ++DV++ LR+KL IETV G GY L Sbjct: 183 DFDPGSNVVDVYVRYLRRKLGAD-----RIETVRGMGYRLV 218 >gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+I+D+ + I+L L++E + V G + ++ + + +ILDL L DI Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLMLPDIS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G V +R P+ +L+ SS + + G G+DDYI+KPF+ ++LVA++ A+ R Sbjct: 61 GENVCERIRKESEV-PIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LI +L +++ K VE I LT EY+++ +L+ N ++E +++ Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDY 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID I +R KL + YI+T+ G GY Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223 >gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 239 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V +++ ++ LR+K+ G + + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGERRLLHTLRGVGYVLREP 238 >gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 246 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L + V GE +E+ D ++LD+ L + GF V Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ L+ + +I ++V GL GADDY++KPF+ +EL ARI I+RR Sbjct: 64 CRRIRAE-SCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGPA 122 Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 123 PTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVPR 182 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 183 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232 >gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 220 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F+V G+ G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR+ A++RR Sbjct: 61 DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G + ++ + +V + G + L +E ++EL LT+ LY Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL + +I TV G GY L Sbjct: 181 WDDDVSSNAVEVHIHHLRKKLGS-----QFIRTVHGVGYTL 216 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ ++ ++L L+ E++ V V + G G+E+ + E+D ++LD+ L + G E Sbjct: 4 RILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +L+ ++ DKV G + GA DY++KPF EEL+AR+R I+R Sbjct: 64 VLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFAQ 123 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H + + I GDL+V L + V + + LT +E++++ L+ KN ++E L+ Sbjct: 124 HTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDILS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E ++DV+I LR+KL + I TV G GY+L+E Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKL-DKGFRYKLIHTVRGVGYMLKEP 230 >gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 227 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 2 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 62 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLSV+L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ N G I+TV G GY+L Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGT-KLIQTVRGVGYMLE 223 >gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400] gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQENPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQIA 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I G+ S+NL + + I LT E+ ++++L L+++ Sbjct: 127 EVPGAPAQQEEMIEFGEFSLNLATREMFHGDESIALTSGEFAVLKVLVNHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + A YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDG 237 >gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 222 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M I +IED+ + + ++ L+ E +NV + GEDG+ + D ++LD L + G Sbjct: 1 MHIAIIEDEIGITNFLKQGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R A STP+ L+ +I + + GLQ+GA+DYI KPF+ EL+ARI R + Sbjct: 61 DVCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFRE-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ +N V G I LT +E++++E L K ++++ + +++ Sbjct: 120 EVLKNQLKLGNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + +IDVFI +RKKLS + YI+T+ G GY+ Sbjct: 180 IDFDYDTGVIDVFINAIRKKLSMD-KDEGYIKTIRGVGYI 218 >gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 245 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 7/229 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M IL+ +DDK + ++++ L SE + G + + + + I++D+ + ++ G Sbjct: 15 MHTILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIMMPELDG 74 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 LR + P+ +L+ S DK+ GL GADDYI+KPFN E++AR+++ +RR Sbjct: 75 IRATAKLR-EGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRY 133 Query: 120 R-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A L+ G +S++ AK V V G + LT EY +++LL + Sbjct: 134 TALGGAEKAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I LR+K+ Y++ VWG GY + + Sbjct: 194 YEQVWNDPAYGSENTVAVHIRHLREKIEINPAEPRYLKVVWGLGYKMDK 242 >gi|295091309|emb|CBK77416.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 247 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60 +IL+ +DD A+ + +++ F G + + + EF I+LD+ + + GF Sbjct: 19 KILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGNDDGF 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR + +TP+ +LSG S D + GL GADDY+SKPFN L A+I+A+VRRS+ Sbjct: 79 HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 138 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G N G I L+ +E+ ++ L +KE Sbjct: 139 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I V+I LR K+ ++ +I+TVWG GY Sbjct: 199 VWN-NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 241 >gi|291086887|ref|ZP_06344776.2| aspartate carbamoyltransferase [Clostridium sp. M62/1] gi|291077294|gb|EFE14658.1| aspartate carbamoyltransferase [Clostridium sp. M62/1] Length = 257 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60 +IL+ +DD A+ + +++ F G + + + EF I+LD+ + + GF Sbjct: 29 KILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGNDDGF 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR + +TP+ +LSG S D + GL GADDY+SKPFN L A+I+A+VRRS+ Sbjct: 89 HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 148 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G N G I L+ +E+ ++ L +KE Sbjct: 149 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I V+I LR K+ ++ +I+TVWG GY Sbjct: 209 VWN-NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 251 >gi|182435928|ref|YP_001823647.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776552|ref|ZP_08235817.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178464444|dbj|BAG18964.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656885|gb|EGE41731.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGAYDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L V+ A+ V I LT KE+ ++E L+LR ++K L H++ Sbjct: 121 AGTAAPVLTVGALRVDTAARRVIRGEDEITLTAKEFAVLEQLALRAGQVVSKAEILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + I++V+I LR+KL +A I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGASA-----IRTVRGAGYRLE 218 >gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 233 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + ++ L+ + V G +EL + + I+LDL L DI G E+ Sbjct: 7 ILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLMLPDIMGEEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A P+ +L+ + D ++GL+ GADDYI KPF+ +VA+ A++RR Sbjct: 67 CRMVR-AVSRVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRRVESD 125 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L ++ V+ G LT EY+++ ++ N T T+E + + Sbjct: 126 KLISVPVSYNQGSLVIDFQNGDVKAGGQDAGLTPTEYKILATMAKAPNRTFTREQLITYA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + ID +I +R K+ +I TV G GY Sbjct: 186 LDDNFDGYDRSIDTYIKSIRSKIEEDRKNPVFIVTVHGIGYRFV 229 >gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ +++ L + V GE+ L +D ++LDLGL I G Sbjct: 1 MRVLLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G L ++ A V G + LT EY+++ + + + +++ + HLYD Sbjct: 121 GIASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230 + + I+VFI +LRKK+ + IETV G GY L + E Sbjct: 181 QDFDRDSNTIEVFIGRLRKKVGSD-----RIETVRGLGYRLTPLTGESEAA 226 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 14/237 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ F+V G + + L + D ++LD+ L D+ GF V Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFTV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR ++ PV L+ DK+ GL G DDY++KPF+ EE+VARIRA++RR+R Sbjct: 73 TRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRSL 132 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I+ GDL ++ D V G I L+ E++++ L L N L+K L+H++ Sbjct: 133 EDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDHVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLS-----NAAGGK------NYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ +AAG I+T G GY+LR Sbjct: 193 EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYMLRTPE 249 >gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580] gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] Length = 233 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 14/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+A+A + L SE F + G G+ ++ D ++LD L D G + Sbjct: 5 KILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWMLPDCSGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + + P+ +++ S I DK+ GL+ GADDYI+KPF+ E+VARIR I+RR Sbjct: 65 ICKKV-TESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLEQ 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I ++ + + V+ G + LT KEY ++ L + T+ Sbjct: 124 AHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTRS 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + +D I +LRKKL + + I+TV+G GY + + Sbjct: 184 ELLEFIWGYDFFGDTRTVDTHIQRLRKKLDAS----DLIKTVFGIGYKFEKQEE 233 >gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLSV+L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ N G I+TV G GY+L Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDNDYGT-KLIQTVRGVGYMLE 222 >gi|329925042|ref|ZP_08279986.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5] gi|328940161|gb|EGG36493.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5] Length = 243 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E + V G +E+ D ++LDL L G +V Sbjct: 5 ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A + P+ +L+ DKV GL+ GADDY++KPF+ E++AR++A +RR + Sbjct: 65 CREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKP 124 Query: 123 AQSLIVTGDLS------------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S TG S ++ D V G + LT +EY+++ L+ +T Sbjct: 125 DNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ YI T G GY++R Sbjct: 185 REHLLQAVWGFEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGYLMR 236 >gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169] gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1] gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1] gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1] gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1] gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7] gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8] gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1] gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72] gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E] Length = 244 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + + V V G+ +L F I+LDL L D G Sbjct: 11 RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDEDGIA 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR S P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 71 ICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 130 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 131 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 191 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDGAE 243 >gi|255261349|ref|ZP_05340691.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62] gi|255103684|gb|EET46358.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62] Length = 238 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 154/226 (68%), Positives = 185/226 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N VY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPRTSKSIELMLSHANLIVYATDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGSDDTENKLKGFGYGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG + VNLDAKTVEV G +HLTGKEYQMIELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGRVMVNLDAKTVEVGGKTVHLTGKEYQMIELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ A GG+++IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATGGESHIETVWGRGYVLRDPEP 226 >gi|239982355|ref|ZP_04704879.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291454200|ref|ZP_06593590.1| response regulator [Streptomyces albus J1074] gi|291357149|gb|EFE84051.1| response regulator [Streptomyces albus J1074] Length = 221 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGLEGLHRASESPYDLLVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RVCAALRAAGNDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRA 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G L V+ A+ V+ G + LT KE+ ++E L LR ++K L H++ Sbjct: 121 GAGASPVHTVGGLRVDTAARRVQRDGDEVALTAKEFAVLEQLVLRAGQVVSKADILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + I++V+I LR+KL A I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISALRRKLGAQA-----IRTVRGMGYRLE 218 >gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908] gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+ ++NL + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIERDPANPRYIQTVWGLGYVFVPDG 237 >gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family [Prosthecochloris aestuarii DSM 271] Length = 236 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD LA ++ L+ + GE+ ++L K +D ++LD+ L + GFEV Sbjct: 6 ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLPGMDGFEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 R +R ++ P+ +L+ DKV G + G DDY+ KPF+ EL RIRA R Sbjct: 66 CRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + Q ++ L V++ V ++G + LT E++++ +L R+ ++E L+ Sbjct: 126 RGKREIQEVMTCDGLEVDISRHRVSLEGRELTLTLMEFKLLVVLLKRRGQAQSRETLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ID I +LR+KL I+TV G GY L + Sbjct: 186 VWDVDKSINTRTIDTHITRLREKLGQTG---RLIKTVRGLGYKLEAPGE 231 >gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ + + L+ E F+V + G+ G+EL + + IILD+ L + GFE Sbjct: 5 HILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPALDGFE 64 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R + + PV +L+ D+V GL GADDY+ KPF+ EL+ RI+AI R Sbjct: 65 VSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILRRG 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R +L+ + + DA T + LT E++++E L T T+E LN++ Sbjct: 125 GRVAESALLERHGIRLRPDAHTASAGERELVLTATEFRLLEDLLRHAGTVRTREQLLNNV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +D + +LR KL AA +ETV G GY +RE Sbjct: 185 WGYSFEGYARTVDTHVRRLRSKLGEAAAA---LETVRGVGYRIRE 226 >gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L E + V G + ++L + + IILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ +L+ S D+++G + G D+YISKPF+ + LVAR+ AI R Sbjct: 65 QVCREVR-ETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G ++++ A V++ G + L+ KE++++ + L++E LN+++ Sbjct: 124 GAVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + ID + KLR KL + YI+T+WG GY + + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG---EYIKTIWGMGYKFEVQSTE 228 >gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G++ ++L K Y+ D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKD-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237 >gi|325684430|gb|EGD26596.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 241 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 17/239 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M+IL++EDDK+++ +EL K E + GE+ +E+ + + FD I LDL L Sbjct: 1 MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +++ S D+V GL GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GIQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR 120 Query: 119 SR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165 + T + ++ + V +R+ LT KE+ ++ ++ + Sbjct: 121 VMLEGQPRDLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E L ++ E + +D I KLR+KL G I+TVWG GY ++ Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEK--SGPQIIQTVWGVGYKFDDS 237 >gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ F V + GEDG++ +D IILD+ L I GF+ Sbjct: 3 KILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R A + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVHNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++++ A+ V V G I T KE+ ++ N L+KE Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V + V I KLR+K+ ++ETVWG GY Sbjct: 182 RNWGYESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGYRF 226 >gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W] gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820] gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W] gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 7/238 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ +S ++KV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G+L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGNLTLVPERFEAIWFNETVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 L ++ + +++ I V I LR KL YI+TV+G GY L + ++ E Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSLPQSNEG 240 >gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + + N+ G G+ L ++D I+LD L + G Sbjct: 1 MKILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++ + G+L + L + V + G+ + L KE+Q+++ L N +++ + ++ Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRQ 223 >gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 223 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R A + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G + ++ + V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSELVCGPVRLDTKSSKATVNGTTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKK+ IET+ G GY ++ A Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGVD-----LIETIRGLGYRMQAPA 220 >gi|54026584|ref|YP_120826.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018092|dbj|BAD59462.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ALA + ++L+ E F+ +V G + + D ++LDL L + G + Sbjct: 4 KILVVDDDMALAEMLTIVLRGEGFDPHVVGDGTQALAAVREIRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIVKPFKPKELVARVRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ D+ +++ A V G +I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAELLSIADIVIDVPAHKVTRGGQQISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKVEKDPENPEIVLTVRGVGYK 221 >gi|257467880|ref|ZP_05631976.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185] gi|317062169|ref|ZP_07926654.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC 49185] gi|313687845|gb|EFS24680.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC 49185] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK + I L E + V G +G++L K + D ++LDL L ++ G Sbjct: 1 MRILVVEDDKEIQELITYFLTKEGYEVDRASDGLEGLKLLKENKNDLVVLDLMLPNLDGK 60 Query: 61 EVLRALRV---AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 + +R + +L+ + IED + GL+ GADDY+ KPF+ ELV RI+ ++ Sbjct: 61 NFTKIVRDISSEYGEPVIIMLTAKTEIEDVLDGLEIGADDYMKKPFDPRELVLRIKKFLK 120 Query: 118 RSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ V G + L+ KEY ++ LL ++ +T+E L+ Sbjct: 121 TTDREIKNEKYRFKDIEIDESRHMVTANGEEVELSKKEYDLLLLLIKNRDLVITRERILD 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +DV+I KLR K+ +G I+TV G GY L E Sbjct: 181 KVWNSNYYTGDRTVDVYISKLRDKIPELSG---CIKTVKGVGYKLEE 224 >gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 222 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + + L+ + + + + G +G + +D +ILD+ L G Sbjct: 1 MKILVIEDDPTVGEFVRRGLEEQRWQTDLCNNGLEGERMALSQPYDLVILDMRLPGRNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV +L+ +++ KV L++GADDY++KPF EEL+AR A++RR R Sbjct: 61 DVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEALLRRPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + GDL ++ + V G I LT KE+ ++E L +++ + + + Sbjct: 121 ALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLITEYAWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P I+DV I LRKK+ +A K I TV G GY++R Sbjct: 181 YHFDPGTNIVDVVINHLRKKI-DARFDKKLITTVRGVGYMIR 221 >gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4] gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L+ + V GE+G L +DA+ILD+GL + G Sbjct: 1 MRILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGLPTMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G + ++ + V V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIACGPVRLDTKSSKVTVSGKALKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKK+ IETV G GY ++ E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGLD-----MIETVRGLGYRIKAPDSVE 223 >gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G + +E + E D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 IQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRIEKE 129 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 HIAGLPNSGVIQVASFRIDTNKRKVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] Length = 234 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ALA + L +E ++V G++ K D ++LD L + G E Sbjct: 4 RILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S S+++ GD+ ++ + + V G I L EY+++E ++E L+ + Sbjct: 124 SPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGEEQDPIRTVRGAGYALDD 227 >gi|121601947|ref|YP_989297.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis KC583] gi|120614124|gb|ABM44725.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis KC583] Length = 233 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 165/229 (72%), Positives = 195/229 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK ++ SIELMLKS NFNVY TDLGE+G +L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTMSQSIELMLKSGNFNVYTTDLGEEGTDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM+SIEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMASIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLIVNLDTKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL + + G +YI+TVWGRGYVLR+ + T Sbjct: 181 GMDEPELKIIDVFICKLRKKLDSVSSGISYIDTVWGRGYVLRDPIAENT 229 >gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 223 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A ++ L + V GE G+ + + FD +I+D + + G Sbjct: 1 MRILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ LR TPV LS + I D+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 QVVETLRREGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G+L +NL +TV QG I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P+ +IDV I +LR K+ + + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLDP 223 >gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 221 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + FD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01] gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3] gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01] gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3] Length = 239 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L + YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio cholerae LMA3894-4] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 LIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-DAGHDKLIQTVRGAGYRF 225 >gi|258654371|ref|YP_003203527.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557596|gb|ACV80538.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 225 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G ++ + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLTIVLRGEGFDTAVVRDGSKAVDAFRDVHPDLVLLDLMLPGVSGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + D V GL+SGADDY+ KPF +EL ARIRA +RR+ Sbjct: 64 VCKEIRAESGI-PIIMLTAKTDTVDVVLGLESGADDYVMKPFKPKELTARIRARLRRADV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + D+ +++ V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 GSAERLRVADVDIDVPGHQVTRDGEPISLTPLEFDLLVALARKPRQVFTREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEVVVTVRGVGYR 221 >gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 226 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TP +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGNQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 238 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/235 (27%), Positives = 114/235 (48%), Gaps = 16/235 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED++ + +I + LK++ + V + + G++G++L + I+D+ + + G + Sbjct: 5 VLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIMMPIMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV LS S DK+ GL GADDY++KPF EL+AR+R+ +RR Sbjct: 65 TMELR-KNYDFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRRYEQI 123 Query: 123 --------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 G L ++ K V V G R+ LT KE+ +++LL Sbjct: 124 LSLQTASKQDKTEKNPHRFCVGGLELDTYTKDVYVDGRRVKLTPKEFAILQLLMESAGRV 183 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++ + + I V + KLR+K+ Y++ VWG GY + + Sbjct: 184 YSAKQIYEQVW-EEEAINTETIMVHVRKLREKIEVNPRQPQYLKVVWGVGYKIEK 237 >gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 LIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-DAGHDKLIQTVRGAGYRF 225 >gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium] Length = 232 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K LA +E+ LK++ + VY G+D ++ + E D ILD+ L D+ GF+ Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ + S ADDYI+KPFN E+VAR++A +R+ Sbjct: 64 ICQKIR-EKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + ++++ + + G I LT E+ ++ L R+ T ++ E Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + I +LR+K+ + +I+TVWG GY + + Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 256 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +D+ L + L L+ E V G +E ++D +ILDL + D G+ Sbjct: 34 RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLMMPDGDGWT 93 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ D++ G + GADDY++KPF+ ELVAR++A++RR+R Sbjct: 94 VCREVRREMDL-PIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRARN 152 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ A+ V+V G I +LT KE+ ++ L+ +++E L + Sbjct: 153 ERARGERLQFPGLVIDIPAREVKVDGRTIGNLTPKEFDLLLFLARHPGQVMSREKILEKV 212 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ +D I LR+KL +I TVWG GY Sbjct: 213 WGYDFYGDLRTVDTHIKNLREKLGREHA---WIATVWGVGYKFE 253 >gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V + G++G++L + I+LD+ L DI G+ Sbjct: 4 KVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISGW 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L+ +R PV +++ DK+ G + GADDY+ KPF+ E+VAR++AI R Sbjct: 64 SLLKTIR-ETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ ++ V V G +I LT KE+ +++LL K +++E LN ++ Sbjct: 123 GSQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +D I +LR+KL +N I+TVWG GY L + Sbjct: 183 GYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 236 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 16 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 76 SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 135 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+ ++ ++ Sbjct: 136 STQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 195 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ + IETV G GY L Sbjct: 196 YAGDDRTVDVHIKRLRERFATTPD--FRIETVRGLGYRLE 233 >gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 231 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + IE+ L +E + V+ G DGI + + ++LD+ + I GF+V Sbjct: 4 VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ +LS S DK++GL +GADDY+ KPFN EL+AR+++ +RR Sbjct: 64 CMKIRKDYNI-PIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I D+++N V G + LT EY+++ LL+ T + E Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR+K+ IETVWG GY + E Sbjct: 183 FKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231 >gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] Length = 229 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ I +L+ F + + + D ++LD + G + Sbjct: 4 RILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMIPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +++ ++ P+ +L+ EDKV+GL++GADDY+ KPF+ +ELVAR++AI R Sbjct: 64 IIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILRRL 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ +I LS++ + V Q I + E++++ ++E LN++ Sbjct: 124 SPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEED-GHDRMIQTVRGTGYRF 225 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + + L+ + V G++ + + D I+LD+GL ++ GF Sbjct: 1 MKILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 EV R +R + P+ L+ D + GL+ GADDY++KPF+ ELVARIR I+ R Sbjct: 61 EVCRRIR-QRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + A + + G+LS++ A ++ G I LT +E ++ LL ++ ++ ++ Sbjct: 120 KAQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D + LR KL A G + IETV G LR Sbjct: 180 GAGSQVSDRTLDSHLRNLRAKLEQAGGN-DLIETVHAVGIRLR 221 >gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2] gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 245 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F+V + + + + D I+LDL + G Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFDVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY++KPFN EL+ARI A++RR Sbjct: 72 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRPT 131 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q +I G S ++ +T++ G + LT E+ M++ L L++E Sbjct: 132 AEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLSREK 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 192 LAQLARGREFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVFVPDG 243 >gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium] Length = 232 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K LA +E+ LK++ + VY G+D ++ + E D ILD+ L D+ GF+ Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ + S ADDYI+KPFN E+VAR++A +R+ Sbjct: 64 ICQKIR-EKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEMVARVKAQLRQYMR 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + ++++ + + G I LT E+ ++ L R+ T ++ E Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + I +LR+K+ + +I+TVWG GY + + Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + + L+ E V G + + ++D+ + ++ GFE+ Sbjct: 4 ILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVMMPEVDGFEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ + KVRGL+ GADDY+ KPF EELVAR+ A++RR R Sbjct: 64 TRWLREERDV-PILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRIR 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A + L + D VE G R+ L KE+Q++ L+ TL+++ + ++ Sbjct: 123 ADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWGYD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +DV I +LR K I TV G GY L NA Sbjct: 183 YAGDERTVDVHIKRLRVKFPEDV-YPFRIRTVRGLGYRLEVNA 224 >gi|254410123|ref|ZP_05023903.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183159|gb|EDX78143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 222 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L+++ F V + +++ +EFD +I+DLGL G + Sbjct: 3 RILIAEDEPRIASFLEKGLRAKGFTTSVAIDAGETLDMALSHEFDLLIMDLGLPGKDGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR P+ IL+ I DKV GL+ GADDY++KPF EEL+AR+R +R + Sbjct: 63 VLEELRGQGEQIPIIILTARDDIRDKVAGLEGGADDYMTKPFRFEELLARVRLRLRNNHL 122 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G +S++L + V V+G R+ L+ +E+ + E L +++E L+H+ Sbjct: 123 PKTKEEMVLTIGHVSLDLRTRRVRVKGQRVELSAREFTLAETLLRHPGQVMSREQLLSHV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV+I LRKKL + IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYIGYLRKKLGSD-----LIETVRGMGYRLR 221 >gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha carboxidovorans OM5] gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha carboxidovorans OM5] Length = 231 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L +E + + GE+ L + D I+LDLGL DI G + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEAAALITEEKPDLILLDLGLPDISGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 +L R + P+ +LS + V+ L+ GADDY++KPF EL ARIR +R Sbjct: 67 LLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVALRHKLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + GDLSV+L + V+V + L+ KEY+++ +L +T + L H++ Sbjct: 127 QQGERPIFQVGDLSVDLVKRIVKVADKEVKLSPKEYEILRVLVQHAGKVITHQHILKHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G + + + V++ +LR+K+ YI T G GY LRE + Sbjct: 187 GGSTDVQ--YLRVYVRQLRQKIEATPDQPQYILTETGVGYRLREPEQ 231 >gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 253 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL D I+LD+ L + GF V Sbjct: 13 VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 73 CRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G+L V+ + + V RI+LT E+ ++ELL + + Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 233 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 113/221 (51%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +DD + + L+ E + V G + E + + ++D+ + + G++ Sbjct: 11 RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIMMPNKDGYQ 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV +L+ ++DK G ++G DDY++KPF +EL+ RI+A++RR + Sbjct: 71 LCREIR-EDYDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQR 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +IV +++ + V G + L KE++++ L T+E + ++ Sbjct: 130 VSADIIVLNGTAIDRKSYEVRSDGQTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWGP 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ ++ A I+TV G GY L Sbjct: 190 DFAGDDRTVDVHIKRLRRRFADRAEDF-VIQTVRGVGYKLE 229 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+ +DD + + L E +NV GE+ +L + I+D+ + Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E+ R +R PV +L+ + DK +G +G DDY++KPF EL+ RI+A++RR Sbjct: 61 GWELCREIR-EFYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ +IV D ++ + V+V+ IHL KE++++ L+ + T++ L + Sbjct: 120 YQMVSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + G E + + IDV I +LR+K + I TV G GY L Sbjct: 180 WGGDTESDSRTIDVHIKRLREKFTEKTNDF-VISTVRGLGYKLE 222 >gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ + D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A + RR Sbjct: 61 RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ GDL V+ A+ V V LT KE+ ++E L++R ++K L H++ Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + II+V+I LR+KL I+TV G GY L Sbjct: 181 DFAYDGDPNIIEVYISSLRRKLGA-----PRIQTVRGAGYRLV 218 >gi|313200176|ref|YP_004038834.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. MP688] gi|312439492|gb|ADQ83598.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 268 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G DG + +D IILD+ L G+ Sbjct: 43 MRILVVEDEHKTGEYLRKGLTEAGFVTDLVHDGLDGQHMALAEHYDLIILDVMLPRASGW 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ ALR A TPV L+ +ED+V+GL+ GADDY+ KPF EL+ARIR ++RR R Sbjct: 103 QIIAALREAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 162 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +++ + V+ G +I LT KE+ ++ELL R+ L++ + + ++D Sbjct: 163 TREADVLQVANLEIDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 222 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + I TV G GYVL Sbjct: 223 MNFDSDTNVIEVAMRRLRAKI-DDPFEPKLIHTVRGMGYVL 262 >gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] Length = 227 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD AL+ I ++L+S + G + D ++LDL L + G E Sbjct: 4 KILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + D V GL++GADDY+ KPF +EL+AR+ A +R Sbjct: 64 ICRRIR-QTSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRHLET 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ ++ DL +NL + V G + LT EY ++ L+ + L++E L ++ Sbjct: 123 QAEEVLKAADLEINLASHQVTRGGRDLGLTPLEYDLLVALASKPGRVLSREELLEQVWGL 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ++++V + +LR K+ + TV G GY + Sbjct: 183 RHGADTRLVNVHVQRLRAKVEVDPDNPQVVLTVRGVGYRI 222 >gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 234 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + F V+ + G + + + + DA I+D+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ S++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAN 127 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L D V G + L+ E+ ++ L K L+K L++ Sbjct: 128 VDDVNNDATISYADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGDTQLIHTVRGVGYVLR 230 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR I++++DD+ + + L E + V G +G+ L + D +ILD+ + + Sbjct: 1 MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+EV R +R + P+ +L+ I D+V+GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 GWEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRR 120 Query: 119 SRGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + IV DL+++LD++ G RI LT KEY ++ L LT++ Sbjct: 121 KSDKIDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ E +++V+I LR+KL G K I+TV G GYVLR Sbjct: 181 MEKIWGYDFSGESNVLEVYIAMLRQKLEE-GGAKRIIQTVRGTGYVLR 227 >gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] Length = 223 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD+ L I+ ML+ E +V G+D K +D ++LD + + G Sbjct: 1 MRILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWMMPAMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 + R LR + P+ +L+ ++ED+V+GL +GADDY+ KPF EL+AR+RA R Sbjct: 61 ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL +N + +V G I LT +E+ +++LL K L +E+ + ++ Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D +I LRKK+ G I + G GY L E Sbjct: 181 GLDADVTDNTLDAYIRLLRKKIEP-PGAAKLIHNIRGVGYTLEE 223 >gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 219 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL EDD L LK E + V + GE IE + D +ILD+ + + G++ Sbjct: 4 KILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLDGWD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + P+ +L+ +D ++G + D+Y++KP + + L+A+++A++RR Sbjct: 64 VCREIRSERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRR--N 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + S+I G L +N + V + G + L+ +EY+M+ + K L++E + L+ Sbjct: 122 NNDSIINMGKLIINDSSHVVTLDGEILELSPREYEMLLYFVINKGIALSREKIITSLWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +D I ++RKKL YIETV G GY Sbjct: 182 DYEGDRRAVDSQIKRIRKKLG-----GEYIETVRGVGYKFE 217 >gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 250 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ + L + F+V G + + ++LDLGL D+ GFE Sbjct: 3 KILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV +LS + +KV L +GADDY++KPF +EL+AR+RA VRR Sbjct: 63 VLAGLRG-WTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAN 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V+L AK V +HLT E+ ++ELL + ++++ L+ + Sbjct: 122 NQPGGEPVVAADSFVVDLVAKKVTKDDKEVHLTPTEWGVLELLVRNQGKLVSQKEILSEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + E + V++ +LR+KL ++ T G GY +AK Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPANPRHLLTEAGMGYRFEPSAKQRPA 233 >gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium] gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii] Length = 232 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K LA +E+ LK++ + VY G+D ++ + E D ILD+ L D+ GF+ Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ + S ADDYI+KPFN E+VAR++A +R+ Sbjct: 64 ICQKIR-EKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + ++++ + + G I LT E+ ++ L R+ T ++ E Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + I +LR+K+ + +I+TVWG GY + + Sbjct: 182 ELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170] gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170] Length = 228 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 113/227 (49%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L SE + V+ + G +G+ K + IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---I 115 E +R T + L+ +V G ++GADDYI+KP + LV++++A Sbjct: 66 EACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R+ ++ G++ +N + + G I L KE++++ LL+ + N +E+ L Sbjct: 126 FRKDSNSNDDIVSVGNIVINREEYKIINDGTEIILPRKEFELLSLLTSKPNKVFKREVIL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 186 DKVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 227 >gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51] gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+I+D+ + +E+ L +E F V G G+ L K +ILD+ + + GF Sbjct: 7 IKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ ++ + + + + +ED+V+GL GADDY++KPF+ EEL+ARI A +R Sbjct: 67 EVCRMLKKSENVSIIML-TAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQF 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V G ++ K ++ Q + L+ EY++++ L L + L+K M L+ ++ Sbjct: 126 PTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++V+I LR+KL + I T+ G GY + Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGD--KEHRLIRTLRGSGYRM 224 >gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] Length = 224 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I + E F V G + ++ +D I++D+ + ++ GF Sbjct: 3 KILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIMMPNLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 R +R + PV +LS + DK+ G G DDY+ KPF+ +EL+ RI AI R S+ Sbjct: 63 ACREIRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTSQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LI DL+++ + V+++ +++L+ KEY ++ L + LT+E L +++ Sbjct: 123 SEKKELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I LRK L + YI T+ G GY Sbjct: 183 YDFFGDERTLDTHIKLLRKNLREYS---RYITTLRGVGYRFE 221 >gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 223 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V G++G++L + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L+ +R PV +++ DK+ G + GADDY+ KPF+ E+VAR++AI R Sbjct: 63 SLLKTIR-ETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTY 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ ++ V V G +I LT KE+ +++LL K +++E LN ++ Sbjct: 122 GSQEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +D I +LR+KL +N I+TVWG GY L + Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 223 >gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 236 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + LK F V GE+G ++DA ++D+ L + G Sbjct: 15 MRILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLPKLDGL 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR I PV LS +S++D+V+GLQ+G DDY++KPF EL ARI+A I R S Sbjct: 75 SLVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRRAS 134 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++L + V G +I L +E+ ++E L +TK M L H++ Sbjct: 135 NATEPTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV + +LR K+ K + T+ G GYVL+ Sbjct: 195 DYSFDPQTNVVDVLVFRLRNKIDKD---KKMLHTIRGVGYVLKP 235 >gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++++ L+ E + V+V G+ G+E D ++LD+ L ++ G E Sbjct: 4 RILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +L+ + DKV GL GA+DYI+KPF EE++AR+R +R Sbjct: 64 VLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGAI 123 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + SVNL+ + V + I LT KEY ++ L +N L++E L Sbjct: 124 IQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E E ++DV+I LRKK+ I TV G GYV+R+ Sbjct: 184 LTVWGYDYEGETNVVDVYIGHLRKKIEEEINSP-LIRTVRGVGYVIRKE 231 >gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 179 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++++ + V V I LT +E+ + +L ++ L Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 246 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + + V + ++ ++LDL L G Sbjct: 13 RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLMLPGEDGLS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL +GADDY+ KPFN EL+ARI+A++RR Sbjct: 73 ICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQVK 132 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G +++L + + G + LT E+ +++ L LT++ Sbjct: 133 ELPGAPSQSDESVEFGPYALDLSTRALTKHGESVALTTGEFAVLKALVQHPREPLTRDKL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 193 MNLARGREWSAMERSIDVQVSRLRRLIEDDPSNARYIQTVWGVGYVFVPDGQ 244 >gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] Length = 235 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +E+ LKS+ + VY G +G+E+ + + I+D+ + + G Sbjct: 5 HVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVMMPRMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MVVRLR-EKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRK 123 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ ++ V G L +N D V G + LT EY+++ LL + E Sbjct: 124 FAEKLNEKEASANVHVIGGLEINEDTVEAAVDGEPVKLTPIEYKILLLLMKSPGRVFSAE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ R I V I +R+K+ Y++ VWG GY + + A Sbjct: 184 EIYERVWNERAITTD-TIMVHIRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD ++ I L +E +NV + G +GI+ K +D IILD+ + ++ G+ V Sbjct: 5 ILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLDGYGV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + +R S P+ L+ ++ D+++G + DDYI+KPF+ LV R+ AI R ++ Sbjct: 65 CKMIR-KTSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNKT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + I L +NLD + E+ G I LT KE+ +++ L + +T+E L+ ++ Sbjct: 124 ISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +I+D I +RKK++ YI+TV G GY L +N Sbjct: 184 DYYGDTRIVDAHIKNIRKKITL-----PYIKTVKGIGYTLDKN 221 >gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 223 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+DD + ++ L E + V V + G G+ + K + +ILD+ L + G+E Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ ILS +E KV+GL GADDY+ KPF EEL+AR++A++RR Sbjct: 64 ICQRFRKD-NFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRIT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + L ++L+A+ V G+ + LT +E+ ++ N LT+E ++ ++ Sbjct: 123 ANKVIQFSD-LKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++V+I LR+K+ + I TV G GYVL+E Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223 >gi|331698935|ref|YP_004335174.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953624|gb|AEA27321.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 225 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLTIVLRGEGFDTAVVGDGTKALPAVRELRPDVVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA VRR Sbjct: 64 VCRAIRSESGV-PIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARIRARVRRVEN 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD+ +++ A V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAEQLSIGDVDIDVPAHQVTRGGVPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 221 >gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 249 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 12/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ALA + L ++V G D + + + + D I+LDLGL + G E Sbjct: 14 RVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGVE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R V +L+ D++ GL GADDYI+KPF+ ELVAR++A++RR R Sbjct: 74 VCRQIRTFSDCY-VLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQ 132 Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + GDL+++ ++V V G + LT E+ ++++LS R + Sbjct: 133 RGAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFS 192 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ ++D + I+DV + +R+KL + YI+TV G GY + + A Sbjct: 193 RRQLIDEVWDIAWVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRMGQGA 247 >gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L + ++++ Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L + YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ F + + +E+ D I+LD G + Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ EDKVRGL+ GADDYI+KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRRS 123 Query: 120 RGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + + V V + + E++++ ++E L+++ Sbjct: 124 SPTSLEEPIDVQGLMLDPTSHRVMVDEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEP-SGHDRLIQTVRGAGYRF 225 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 RIL++ED+ A+ + + L+ ++V + GE ++ + FD ILD+ + I G Sbjct: 3 RILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + +L+ + DKV GL GADDY++KPF+ ELVAR+ ++ RR Sbjct: 63 LTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRRV 122 Query: 120 RGHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 GD +NL + ++ +G I LT E+Q++E L + Sbjct: 123 AIAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDRT 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L H++ E KI+DV I +LR K+ + +I TVWG GY Sbjct: 183 NILTHVWGEAYYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGYKWE 232 >gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 263 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + +E L F + V G G EL +DAII+D+ L + G Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 E+L+ LR I TPV ILS S+ D+V GL+ G DDY++KPF EL+AR+ + I R Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++L ++ V L +E+ ++E L K +T+ L +++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 P +++V IC+LR+KL ++T GY L E++ Sbjct: 212 GYNFVPATNVVEVHICRLREKLER-PNKPRLLQTFRKAGYALVEDS 256 >gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 247 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDGFT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + + PV +L+ ++ + KV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 ICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRA 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ + +++ I V I LR KL YI+TV+G GY L A Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRRPRYIKTVYGAGYCLELPA 233 >gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 243 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ I+ D ++LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVSK 125 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S I L ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 126 NGNSGIPSSGVISVHTLKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSDIL 185 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234 >gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B] gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 241 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G+ +NL + + I LT E+ ++++L L+++ Sbjct: 127 EIPGAPAQQEEEVGFGEFHLNLATREMYRGDESIALTSGEFAVLKVLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L+ +NF+V GE+ +++ + + +ILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV R +R P+ +L+ D++ G + G D+YISKPF+ + LVAR+ AI R Sbjct: 65 EVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G + ++ A V G ++ L+ KE++++ + L++E LN ++ Sbjct: 124 QDAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + ID + KLR K+ + YI+TVWG GY +A+ Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGYKFEVDAQ 227 >gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 5/227 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L++EDD + I++ LK E ++V + GE E Y +ILDL L I Sbjct: 1 MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLMLPKIS 60 Query: 59 GFEVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV + +R + + +++ +S + K+ GL+ GADDY++KPF+ EL+ARI A++R Sbjct: 61 GEEVCQWIRAQERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R Q + G + V + G + LT E+ ++ N L++E + Sbjct: 121 RGGQFCQKISHEGLVIK-PRKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQ 179 Query: 178 LY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D + + ID I KLR+K+ I TV G GY Sbjct: 180 IHPDDEADILDRTIDAHIKKLREKIETEPKKPQRIVTVRGMGYQFVP 226 >gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 227 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + +K+E + VY G+D +++ D ILD+ + D+ G + Sbjct: 4 VLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDGITL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K + P+ +LS DKV GL +GADDY++KPFN EL+AR++A +RR + Sbjct: 64 CMEIR-KKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122 Query: 123 AQSLIVTGDLSVNLDA----KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++L V + I LT KE+ ++ELL K + E + L Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182 Query: 179 YDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +I V I +R K+ YI+TVWG GY Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGYKF 226 >gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 14/235 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ +L++ED+K + +I + L ++ +NV+ G +G+++ K I+D+ + + Sbjct: 1 MKLYNVLIVEDEKEICDAIAIYLNNQGYNVFKAHNGIEGLDVIKNETIHLAIVDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ LR PV +LS S DK+ GL GADDYI+KPFN EL+AR+ + +R Sbjct: 61 DGIQMTMKLRGE-FDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLR 119 Query: 118 RSRGH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 R + + + L +N + K V V + LT E++++ LL Sbjct: 120 RYSKYLNVINNLEEKNNNFIIDGLELNAETKEVFVDEEPVKLTPIEFKILHLLIKNPGRV 179 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 180 FSADEIYEKVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233 >gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 224 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA IEL L E + V V G + + D IILD L + G E Sbjct: 3 HILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + R LR + P+ +L+ + V GL +GADDY+ KPF+ EEL+AR+RA R Sbjct: 63 ICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSKE 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ DLS+N V + LT KE+ +++ L +T++ L ++ Sbjct: 123 TDSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+V+I LR KL K ++TV G GYVLR+ Sbjct: 183 YDFMGDSNVIEVYIRYLRLKLEAN-NEKRLLQTVRGVGYVLRD 224 >gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] Length = 236 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L K++ ++ L+ T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKQFLLLYKLAASPGRTFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I +LR++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRLRERFKDNPDFE--IVTMRGIGYK 232 >gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814] gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +E+ LKS+ + V+ G +G+E+ + + I+D+ + + G Sbjct: 9 HVLVVEDDKEIREGVEIYLKSQGYEVFQAADGVEGLEVIEKEDIHLAIVDIMMPRMDGIS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR K PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 69 MVVKLR-EKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 127 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + G L +N D V V G + +T EY+++ LL + E Sbjct: 128 FMERLGDKEENSRIHTIGGLEINEDNVEVTVDGEPVKMTPIEYKILLLLMKNPGRVFSAE 187 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ R I V + +R+K+ Y++ VWG GY + + A Sbjct: 188 EIYERVWNERA-INTDTIMVHVRNIREKIEVNPREPKYLKVVWGVGYKIEKQA 239 >gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+ + L L +N+ V + + + + I+LD L G Sbjct: 4 KILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEEQ-PQLILLDWMLPGRSGIM 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L+ + P+ +L+ S+ ED + L +GADDYI+KPF+ + L+ARI A+ RRS Sbjct: 63 FIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +L ++ A+ V V+ + L+ EY+++ L ++E LNH++ Sbjct: 123 YDPPSQIVSFENLQIDQQAQRVSVENQFVELSATEYKLLLFLMTHPEKVYSREQLLNHIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +D +I +LR+ L Y++TV G GY + +D Sbjct: 183 GDDIYVEDRTVDSYIRRLRRSLEPFQAD-RYVQTVRGFGYRFSNHFQD 229 >gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712] Length = 269 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L+ V G + + D I+LDL L + G E Sbjct: 12 RILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLPGLDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV +L+ ED++ GL+ GADDY++KPF+ ELV R+ +++RR+R Sbjct: 72 VCRRLR-ATGPVPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVLRRTRT 130 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A GDL+V+ + G + LT +E+ ++ T ++E Sbjct: 131 TAARATPAVAPRPVLRAGDLTVDTATRRATRAGAELGLTLREFDLLAYFLEHPRTAHSRE 190 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++ + V + +LR K+ IETVWG GY Sbjct: 191 ALMRRVWGWDF-GDLSTVTVHVRRLRAKIEQDPARPRLIETVWGVGYRFEP 240 >gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 236 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + FNV G +G+++ + + DA ILD+ + + GFE Sbjct: 10 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++E+++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 129 Query: 122 HAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L V G + L+ E+ ++ L L L+K L++ Sbjct: 130 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ I+TV G GYVLR Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKV--DTHEPQLIQTVRGVGYVLRTP 234 >gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] Length = 242 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A + L + V G + + D ++LDL L + G E Sbjct: 13 RVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLMLPGMDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ +++RRSR Sbjct: 73 VCRRMRGR-GPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 131 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L+V+ A+ +G + LT +E+ ++ +E + + Sbjct: 132 APAAASGPLRAAGLAVDPAARRATKRGAELALTVREFDLLAFFLRHPGRAFAREELMREV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + V + +LR K+ + ++TVWG GY A Sbjct: 192 WGWDF-GDLSTVTVHVRRLRGKVEDDPARPRLVQTVWGVGYRFDAAA 237 >gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B] gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B] Length = 217 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L +EL K E V + GED I + ++ D ++LD+ L DI G Sbjct: 1 MKILVVEDDDKLRRLLELEFKHEKCTVKTCEYGEDAIIEYQEFKPDVVVLDIMLPDIDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R S + +L+ +S ++K+ G +SGADDY+ KPF+ EEL AR++AI RR Sbjct: 61 EVAKKIRKLDPSAGIIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL +N+ + V +G I+L+ E+ ++ L ++KE L+ ++ Sbjct: 121 ITLNDEIKIKDLIINISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E ++V+I LRKKLS+ I+TV G GY Sbjct: 181 ISYEGSENTVEVYINYLRKKLSSD-----IIKTVRGIGY 214 >gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4] gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 241 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+ S+NL + + I LT E+ ++++L L+++ Sbjct: 127 EVPGAPTLQEEEITFGEYSLNLATREMYHGEESISLTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + A YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDGQ 238 >gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 246 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 12/229 (5%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA + L+ E F+V + G D + + + D +ILDL L I G EV Sbjct: 15 LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVEVC 74 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121 R LR + V +L+ + D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 75 RQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTVA 133 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G L++++ + V + + LT E+ ++ LS R ++ Sbjct: 134 TPISAATAADEPPPRAFGPLAIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSRR 193 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ ++DV I LR+KL++ Y+ TV G GY + Sbjct: 194 QLLEAVWGDSWGGNEHLVDVHIGHLRRKLADDPADPRYVITVRGVGYRM 242 >gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 251 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I++D L G Sbjct: 27 MKILIIEDDLEAAAYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRRDGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 87 SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 147 TPEQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 251 >gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4] gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQAP 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+ ++NL + + I LT E+ ++++L L+++ Sbjct: 127 EVPGAPTQQEEEITFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + A YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDG 237 >gi|254517714|ref|ZP_05129770.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911463|gb|EEH96664.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 241 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+K ++ ++L L+ E + V + + G+ +L + +D +ILD+ + + G+ Sbjct: 22 KILVAEDEKQISKVMKLYLEKEGYEVTLANDGKVAEDLIENNTYDLVILDIMMPNKDGWY 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ ++ T V I S ED++ G + GADDY+ KP + ELV R+ + + Sbjct: 82 LLKKVKSLNNKTQVIITSARGEEEDRIFGFELGADDYMVKPISMRELVLRVGLRINSVKN 141 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G+L V+ + + V I LT KEY ++ L KN T+E + ++ Sbjct: 142 EYTKEIKLGNLRVDDNNRRVFENEKEIILTPKEYDLLMFLIKNKNRVFTREDLITSVWGY 201 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D + KLR+KL ++TVW GY L Sbjct: 202 DFYGDTRTVDTHVKKLREKLEFFREN---LKTVWRVGYSL 238 >gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905] gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905] Length = 713 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ +F V + G++G++ ++D IILD+ L + GFE Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFE 547 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R A + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 548 ICKQIR-AVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ ++++ A+ V V G + T KE+ ++ N L+KE Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V + V I KLR+K+ ++ETVWG GY L Sbjct: 667 RNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 711 >gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A + L+ V G+DG+ + +DA+++D L + G Sbjct: 1 MRILVIEDDLEAASYMLKGLRESGHVVEHAADGKDGLYMAAAGSYDAMVVDRMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR +TPV LS M ++D+VRGL++G DDY++KP+ EL+AR+ A R Sbjct: 61 TIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRAG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL ++L ++V G I L KE+ ++E L +T+ M L +++ Sbjct: 121 AVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR+K+ + TV G GY LR+ Sbjct: 181 DYSFDPQTNVIDVHISRLRQKIDKDFDRP-LLHTVRGSGYSLRD 223 >gi|312140675|ref|YP_004008011.1| two component system response regulator mtra [Rhodococcus equi 103S] gi|325675695|ref|ZP_08155379.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311890014|emb|CBH49332.1| two component system response regulator MtrA [Rhodococcus equi 103S] gi|325553666|gb|EGD23344.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 225 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++L+ E F YV G + + D ++LDL L + G + Sbjct: 4 RILVVDDDTALAEMLTIVLRGEGFEPYVVGDGSQALTAVRETRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRAESGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GD+ +++ A V I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAEVLSIGDIMIDVPAHKVTRDNALISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKVEKDPENPEVVLTVRGVGYK 221 >gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 262 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE +E+ D ++LD+ L + GF V Sbjct: 22 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 82 CRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 140 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL V+ + + V RI+LT E+ ++ELL + + Sbjct: 141 NAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 200 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 201 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250 >gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 113/219 (51%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ++ +E L+ E + V G + I + ILD+ + GFE Sbjct: 16 RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGPDGFE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ + + V +L+ +I+D+V+GL GADDY+ KPF+ EEL+ARI A VR Sbjct: 76 VCRMLK-SMGNVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRNQFP 134 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 G ++ K + +G + L+ EY+++ L L+K L+H++ Sbjct: 135 SLLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLVLSKAQILDHVWGY 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + I++V+I LR+KL + + I T+ G+GY Sbjct: 195 DFNGQDNIVEVYISALREKLGD--RDRTLIRTLRGQGYR 231 >gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ ++ +L+ F + + + + D I+LD G + Sbjct: 4 KILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ EDKVRGL+ GADDYI+KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRRS 123 Query: 120 RGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + + V V + + E++++ ++E L+++ Sbjct: 124 SPTSSEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + + + I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEP-SEHDHLIQTVRGAGYRF 225 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ + V G + E D II+D+ L D+ GF Sbjct: 5 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + LR A PV LS S EDK+ GL G DDY++KPF+ +E++AR+ AI R Sbjct: 65 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I GDL ++ ++ V ++G+ I L+ E++++ L N L+K L H++D Sbjct: 125 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I +R+KL+ + I T G GY++R Sbjct: 185 YDFDGDSSIVESYISYIRRKLAAYSSE-TIIHTKRGFGYIMR 225 >gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA I +ML+SE++ + G ++ D ++LDL L + G E Sbjct: 17 RILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLDGVE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ + +D V GL++GADDY++KPF +EL+AR+ +RR+ Sbjct: 77 ICRLIRSESDV-PIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 135 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ V+ I LT E++++ L+ T+E L+ ++ Sbjct: 136 GAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWGY 195 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++++V + +LR K+ + + TV G GY + E+A Sbjct: 196 QHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 239 >gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++A+ + L + + V G + ++ D +ILDLGL DI G E Sbjct: 7 RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R + P+ ILS +DKV L +GADDY++KPF +EL+ARIR +R Sbjct: 67 VVRRIR-EWSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRTP 125 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + DL V+L + V VQG+R+ LT EY +I++L LT L ++ Sbjct: 126 DQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEYDLIKVLVQHAGRVLTHNQLLRQVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E ++ V I LR+K+ YI T G GY LRE+ Sbjct: 186 PAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRLRED 229 >gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD+ +++ + L +N+ + D GE EL Y+FD I++D+ L + G Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ + +R TP+ +LS ++S +DK++ L GADDY+SKPF+ EEL++RI+A+ RR+ Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+++++ D V I + EY++ L KN L++ L++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I +R K+ + I TV G GY++++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKI--DETEQKIIHTVKGTGYLIKD 224 >gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum] Length = 232 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K LA +E+ LK++ + VY G D ++ + D ILD+ L DI GF+ Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ + S ADDYI+KPFN E+VAR++A +R+ Sbjct: 64 ICQKIR-EKFYFPVIMLTAKV-EDGDKIMGLSIADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q D ++++ ++ + G + LT E+ ++ L + ++ E Sbjct: 122 YRQPHFKQEDERSEYDIRGMTISKNSHKCILFGKELQLTPTEFSILWYLCENQGKVVSTE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+K+ A +I+TVWG GY + + Sbjct: 182 ELFEAVWGEKYMDNNNTVMAHIGRLREKMKERAKNPKFIKTVWGVGYTIEK 232 >gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + ++L++E + V + GE I K D IILD+ + + GF+ Sbjct: 4 KILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAKDM--DLIILDVMMPKMDGFK 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R + P+ L+ + +DK G SG DDY++KPF+ EL+AR++A++RR Sbjct: 62 ACRQIR-EVSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 120 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S IV DL ++ ++ ++ G ++LT EYQ++ LL+ + + Sbjct: 121 YKGKEEPLTDSHIVMHDLDISRESNQIKKNGQTVNLTEMEYQILLLLAEHPKKIFSNQEL 180 Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G I V I LRKKL YI+TVWG+GY Sbjct: 181 YEAIWKGPYMYSANNTIMVHIRNLRKKLDVDPQNPLYIKTVWGKGYRF 228 >gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 244 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 4/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+A L L+ + F V V G + + A++LD+GL+ + G E+ Sbjct: 27 VLVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGLSGMDGIEI 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RALR A TPV ++ D++ GL+ GADDY++KPF+ EL AR+R ++RR+ G Sbjct: 87 CRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRASGS 146 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G + +++ + + LT E+ ++ L L+++ L+ ++ Sbjct: 147 PATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVWGYA 206 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV + +LR KL + + I TV G GY Sbjct: 207 AAAGTRTVDVHVAQLRAKLGDDS----PIRTVRGIGY 239 >gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 223 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L R + PV IL+ DKV G+ +GADDY++KPF+ +E++ARIRA++RR+ Sbjct: 61 TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VFI +LRKK+ N IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGND-----LIETVRGLGYRMQAPG 220 >gi|110566635|emb|CAL23368.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus amyloliquefaciens] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 9 DKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV 68 + ++ ++ L+ ++V GE+ +EL + D I+LD+ L + G +V + LR Sbjct: 1 EPSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVDGIDVCKQLRQ 60 Query: 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---------S 119 K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR Sbjct: 61 QKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADISSLSQGR 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I+ G+L + + + ++ LT KE++++ L K LT+++ L+ ++ Sbjct: 121 EEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+DV I LR K+ + YI+T+ G GY L E +E Sbjct: 181 NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 229 >gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c] gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E + + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+AR++A++RR Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKVV 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ ++ G +NL + + +G + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ L YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFVPDG 237 >gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676] gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYDGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + IE+ LK++ + V+ G +G+E+ + + I+D+ + + G + Sbjct: 6 ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEKIHLAIVDIMMPKMDGITM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + PV +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKLR-EQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRYAKY 124 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +L V G + +N D K V V G + +T KE+ ++ LL + E Sbjct: 125 LKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D + I V + +R+K+ + Y++ VWG GY + + Sbjct: 185 IYERVWK-EDAISTETIMVHVRNIREKIEIDSKNPKYLKVVWGVGYKIEK 233 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + L+ F V G + ++L + D +LD+ L D+ GF V Sbjct: 12 LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFAV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ ++ S++DK+ GL G DDY++KPF+ EE+VARIRA++RR+RG Sbjct: 72 TRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRGD 131 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++ D+ V G I + E++++ L L N L+K L+H+++ Sbjct: 132 IDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I++ +I LR+K+ + G I T G GYVLR Sbjct: 192 YDFRGESGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLR 232 >gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942] gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942] Length = 236 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+I+D++ + I+ +L E V + +DG + + D ++LD+ L D G+ Sbjct: 7 KVLIIDDEQEILALIKTVLVKEGIENVITSSTAKDGFTQFQQKQPDIVLLDIMLPDGEGY 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R + P+ LS DK+ GL G DDYI+KPF+ +E+ R++A +RR+ Sbjct: 67 DVCKQIR-ELSNVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRAN 125 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++I G ++ + G + L KE ++++ N ++KE Sbjct: 126 YSQSKGIADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLY 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ I V I +LR+K+ +Y+ TV G GY E Sbjct: 186 NAVWGEDSFGFDNTIMVHIRRLREKIETKPSKPDYLVTVKGLGYKFVE 233 >gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25] gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L + YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 222 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ + ++ L+ NF+ + + G GI++ K FD ++LD+ L D+ G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSGWN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 VL+ +R PV +++ S D++ G + GADDY+ KPF+ E+VARI+AI R Sbjct: 63 VLKTIR-ESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKW 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +LI ++++ D++ V+V G +I LT KE+ ++ LL+ L++E LN ++ Sbjct: 122 AESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + ++ I+TVWG GY L Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGD---KRDIIKTVWGYGYKL 219 >gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L E++ V GE+ +++ K IILD+ + I G+ Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V R +R P+ +L+ S D++ G + G D+YISKPF+ + LVAR+ A++RR Sbjct: 65 DVCREVR-ETSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSG 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+ + + G + ++ A V V G I L+ KE+++++ + L++E LN+ Sbjct: 124 LTAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNN 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + + ID + KLR K+ YI+T+WG GY Sbjct: 184 VWNYDYFGDARTIDTHVKKLRAKIGEKG---EYIKTIWGVGYKF 224 >gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] Length = 235 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L+ E + V G + +++ + + IILD+ + + G+ Sbjct: 14 KILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPHMDGW 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + R +R P+ +L+ S D+++G + G D+YISKPF+ + LVAR+ AI R + Sbjct: 74 QTCREIRKESKV-PIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRRTN 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L+ + ++ A V++ G I L+ KE++++ + L++E LN+++ Sbjct: 133 ALASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILNNVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL + +YI+T+WG GY Sbjct: 193 NYDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGYKFE 232 >gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 246 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + ++ + Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSSEQLSLDTD 242 Query: 235 TA 236 A Sbjct: 243 VA 244 >gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 241 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ + G + + +++ I+LDL L ++ G V Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMDGITV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR++ Sbjct: 65 ASKLR-EHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQVA 123 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ LI L ++ DA V G +++LT KEY+++ L+ N +E Sbjct: 124 TAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETCE 231 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + +E+ + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEIKSNNESTQ 241 >gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 228 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 131/225 (58%), Gaps = 2/225 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +A +++ L+ E ++V + G G+ +D IILDL L + GF V Sbjct: 5 ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLMLPGLDGFSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV ILS ++DKV GL GADDY++KPF+ EEL+ARIR ++R++ Sbjct: 65 LRELRKKSST-PVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAKS 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +V ++++L V+ G +I LT KE+++++ L + LT+E L +++ Sbjct: 124 NANKLVYDGITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVWGYN 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E I+DV+I LR K+ + I+T+ G GY LR+ + Sbjct: 184 YIGETNIVDVYIRYLRSKI-DEPFDNKLIQTIRGVGYSLRKEKNE 227 >gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510] gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510] Length = 248 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + ++ L+ E F V GE+ + ++LD L + G EV Sbjct: 23 VLIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEV 82 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR P+ +L+ D+VRGL SGADDYI+KPF+ ELVAR+RA+ R S Sbjct: 83 CRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRRAS 142 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ D++++L A V +HL E++++ ++E L+ ++ Sbjct: 143 PGMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDLVW 202 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK ++ + I TV GY L Sbjct: 203 GHDVYVEPRTVDVHIRRLRKAMNEEDEL-DLIRTVRSAGYAL 243 >gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 254 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD ++ + L+ F + G ++ + D +ILD+ L + G EV Sbjct: 25 VLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPLMSGLEV 84 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR R V +LS +D++ GL+ GADDY+ KPF+ E + R+ A++RR+ Sbjct: 85 LRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRRAERL 144 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + ++T V G + LT +E+ ++ L T TKE + Sbjct: 145 GAVTLLPKVTERLGVRVDTGSRTATVDGRGVELTTREFDLLAYLIAHPGLTFTKEQLMRR 204 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V + ++R+K+ I TV G GY + + Sbjct: 205 VWGWDF-GDTSTVTVHVRRVREKIETDPSDPQRIVTVRGAGYRFGDPEE 252 >gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L S+ + + + IEL + + D ++LDLGL + G E Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEKPDLVLLDLGLPGMSGHE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR R + PV ILS + V L+ GADDY++KPF ELVARIR +R Sbjct: 67 LLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKFQ 126 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + TGDLSV+L + V+V+G + L+ KEY+++ +L LT L ++ Sbjct: 127 QQGEKPVFQTGDLSVDLVKRVVKVEGKEVKLSPKEYEILRMLVQHAGKVLTHHFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + V++ +LR+K+ YI T G GY LRE Sbjct: 187 GDSTDVQ--YLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLRE 228 >gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DDK + +IE+ LK+E++ VY G + + + YE +I+D+ + + G Sbjct: 1 MNILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEALLVFDNYEIHLVIIDIMMPVMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +R K + PV +LS S DK+ GL GADDY++KPFN ELVAR+++++RR Sbjct: 61 RATMKIR-EKYNIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRRYV 119 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + TG L ++ DAK V++ + LT EY++++ L + + Sbjct: 120 SLGSFVAQSGVFKTGGLIIDDDAKEVKIDDKPVKLTPVEYKILKFLCENAGKVFSIDQIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 180 EQVWNEPSFSPENTVAVHIRRIREKIEINPKDPKYLKVVWGIGYKIEK 227 >gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] Length = 265 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ AL+ + L++E F V + G++ D +ILD L + G E Sbjct: 29 RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWMLPGVSGLE 88 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R + + PV +L+ ++VRGL GADDY+ KPF+ EL+AR+R++ R Sbjct: 89 ICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRRA 148 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ GDL ++ V G +HL E++++E L R ++ L+ + Sbjct: 149 RPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDSV 208 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + + +DV + +LRK L A G ++ I TV G GY E Sbjct: 209 WGLSAEIDERTVDVHVGRLRKAL-TAPGERDPIRTVRGAGYSFDE 252 >gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666] gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 245 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L E F V + + + + D I+LDL + G Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL+ GADDY++KPFN EL+ARI A++RR Sbjct: 72 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRPT 131 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q +I G S ++ +T+ G + LT E+ M++ L L++E Sbjct: 132 AEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLSREK 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 EP + +DV + +LRK + A YI+TVWG GYV + Sbjct: 192 LAQLARGREFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVFVPDG 243 >gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787] gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787] Length = 233 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DDK + +IE+ L E + V GE+ I+ K D +I+D+ + + G Sbjct: 5 KILVCDDDKEIVEAIEIYLTQEGYEVLKAYDGEEAIQTLKKEHVDLLIMDVMMPRLDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +R P+ ILS S DK+ GL GADDY++KPFN ELVAR ++ +RR Sbjct: 65 ATLKIREENSL-PIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRRYTQ 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + G LS+N + K V V G + LT EY ++ LL + + + Sbjct: 124 LGSTVQDEKKEVYEVGGLSINDELKEVTVDGESVRLTPIEYNILLLLVKNQGKVFSIDQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +R+K+ Y++ VWG GY + + Sbjct: 184 YENIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 232 >gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 237 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ I+ LKS + V GE+ + + + IILDL + ++ G E Sbjct: 14 KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLE 73 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR P+ +L+ ++ D+V GL+ GADDY++KPF+ ELV R++ ++R Sbjct: 74 VCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLRSG 133 Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +LS+N+ V+G + LT E++++ +L+ R+ ++E L Sbjct: 134 QTTGEKSDEIILKELSLNIPKHLALVKGKPVELTATEFKLLTVLAQRRGRVQSREQLLQD 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + + + +D + +LR+KL AA Y++TV G GY + Sbjct: 194 VWEYDNLIDTRTVDTHMRRLREKLGAAA---RYLDTVRGVGYRFVDE 237 >gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 231 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++AL + L++E F V G+D L D ++LD L + G Sbjct: 1 MQVLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGI 60 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 E+ R +R PV +L+ D+VRGL +GADDYI KPF+ EL+ARIRA+ R Sbjct: 61 ELCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H + GDL ++ V G +HL E++++E L L ++E L+ Sbjct: 121 AKPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV + +LRK L N + I TV G GY E Sbjct: 181 VWGHDVYIDERTVDVHVGRLRKAL-NGPRQADPIRTVRGSGYAFDE 225 >gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 227 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + + L +E + V G + ++L K ++ IILD+ + ++ G E Sbjct: 7 KILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMPEMDGIE 66 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R K T + + +V G +GADDYI+KP + L+++++A++RR Sbjct: 67 ACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVKALLRRF 126 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G L +N + V + L KE++++ LL+ + T+E L+ Sbjct: 127 KNEEAPSQITKVGKLIINREEYKVFKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDK 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 187 VWGLEVVVGGRTIDVHIRKLREKIGDESF-----KTVKGVGYKFV 226 >gi|302380601|ref|ZP_07269066.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|303233633|ref|ZP_07320287.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|302311544|gb|EFK93560.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302495067|gb|EFL54819.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+K ++++ + L+ E F V G++ I++ ++ IILDL L I G Sbjct: 9 IKILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGE 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V+ +R + PV +++ ++ + GL+ GADDYI+KPF+ + LV +++ I+RR Sbjct: 69 KVMEVIRSRTET-PVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE 127 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +S++ D T G I LT E+Q+I+ L N T++ + Sbjct: 128 KLGLPKSDKIYFDNGRVSISFDDNTFIKDGENISLTSNEFQIIKTLFSNPNKIFTRDEII 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + ID I +R K+ + YI+T++G GY L Sbjct: 188 ELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233 >gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 238 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ A + + V GEDG+ ++D +++D L G Sbjct: 13 MRLLLVEDDQDAADYLRKAFREAGHVVDHAADGEDGLAYALDGKYDVLVVDRMLPRRDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR +TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ A R + Sbjct: 73 SLVAELRGRGDATPVLILSALGQVDDRVVGLRAGGDDYLPKPYAFTELLARVEALSRRGA 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V G I L +E++++E L +T+ M L +++ Sbjct: 133 PQAAETVYRVGDLELDRLAHRVARGGKEIPLQPREFRLLEYLMRHAGQVVTRTMLLENVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ I TV G GY++R Sbjct: 193 DYHFDPQTNVIDVHVSRLRSKIDKGFDVP-LIHTVRGAGYMVR 234 >gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 225 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 131/218 (60%), Gaps = 3/218 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++EDD+ L ++E + E F V + G ++ K +D IILD+ + I G +V Sbjct: 6 LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVC 65 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR+ P+ +L+ S +EDK+ GL++GADDYI+KPF+ +EL+ R++ ++RR Sbjct: 66 KQLRLQSEI-PIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQ 124 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + IV DL+++L V +G I+LT KE++++++L+ N T+ +E+ LN ++ Sbjct: 125 EEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIAS 184 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+DV+I +R KL + I T+ GRGY+L Sbjct: 185 DYDSNIVDVYIKNIRNKLEDKP--PKLILTIRGRGYML 220 >gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae] Length = 250 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 9/221 (4%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 + + ++ L E F+ + G + L + FD I+LD+ L + G EV + LR + Sbjct: 29 ILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCKRLRAKGV 88 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---------RGH 122 TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR+ Sbjct: 89 KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNI 148 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A + G L V + V + LT KE++++ L N TLT+E L ++ Sbjct: 149 ADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWGYD 208 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 209 FGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 249 >gi|239944331|ref|ZP_04696268.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990784|ref|ZP_04711448.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 220 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L ++ A+ V I LT KE+ ++E L+LR ++K L H++ Sbjct: 121 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + I++V+I LR+KL A I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGAAT-----IRTVRGAGYRLE 218 >gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L+ E F+V GE+ +E+ K E +I+D+ + + G Sbjct: 4 ILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVMMPKLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R S P+ ILS + DK+ GL GADDY+ KPFN ELVAR+++ +RR Sbjct: 64 TLKIR-ENSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 122 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ G LS+N D K V V G + LT EY ++ LL + + Sbjct: 123 GNAAESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + +N Sbjct: 183 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 230 >gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei] gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei] gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD A+ ++L L+ + V+ + GE GIE+ + D ++LDL L + GFE Sbjct: 4 VLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLPGMDGFET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A P+ +L+ + D V GL++GADDY++KP L ARIRA++RR+ Sbjct: 64 CRRMRAAGPV-PIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRRAAVE 122 Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GDL ++ A V +G + LT E +++ LS +++ L+ Sbjct: 123 RPDGPAAAEERHGDLVIDRAALEVTKRGEPVSLTPTELKLLLELSRTPGQVYSRQQILSA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +++D + +LR K+ + +++TV G GY Sbjct: 183 VWDHDYLGDSRLVDACVQRLRAKIEDVPAKPEHVQTVRGFGYRF 226 >gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + L Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122 + +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ + Sbjct: 61 KIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I L++++D +V G + LT E+Q++ L + TK+ Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYRS 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 231 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDKA+ ++E+ LK E +NV G+ ++ + + +++D+ + ++ G Sbjct: 6 ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPELDGLSA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ RR Sbjct: 66 TVKIREELNI-PIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRRYTQL 124 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L ++ +AK + V G + LT EY ++ L + + + Sbjct: 125 GGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 185 VWKEPAYSSENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230 >gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21] gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K LA + L+ E + V G G+ + + D I+LDL L + G EV Sbjct: 4 VLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLPGMMGTEV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ A+++ PV +L+ D+V G + GADDY+ KPF+ EL+ R+RA+ R+ Sbjct: 64 CRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G L ++++ V V G + LT E++++ L+ R ++E+ L +++ Sbjct: 124 PAAEGATISLGTLLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D + +LR KL A I+TV G GY L E+ Sbjct: 184 GYSYLGDTRTVDTHMTRLRTKLGAAG---ELIKTVRGFGYKLEES 225 >gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 232 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + V + G DG+ L + E+ +ILD+ L + G+ Sbjct: 1 MKLLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL LR A PV L+ SSI D+V+GL+ GADDY++KPF EL+AR+R + R Sbjct: 61 TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 IV DL V+ + VE G RI L+ KEY ++ELL+ R+ L + + + ++ Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D + + +IDV I +LR K+ + I TV G GYVL A D+ Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFAD-KLIITVRGMGYVLE--APDDGA 228 >gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I++D L G Sbjct: 24 MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 84 SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDYSQP-LLKTIRGAGYMIKDEG 248 >gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 223 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ ++RKKL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPP 219 >gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L + +DAI+LD+GL + G Sbjct: 1 MRLLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL + R A TPV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLESWRRAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ + V V+G + LT EY+++ L +++ + HLYD Sbjct: 121 GHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKKL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLDCD-----VIQTVRGLGYLLAAPE 220 >gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD+A+ + L L+ + V GEDG+EL + + DA+ILDL L +PG E Sbjct: 3 RVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R A P+ + + D V GL++GADDY+ KP L ARIRA++R Sbjct: 63 VCRRIR-AHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGG 121 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL ++ TV QG + L E +++ LS +++ L Sbjct: 122 APDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +++D + +LR K+ AG Y+ TV G GY Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGYRF 226 >gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 130/227 (57%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + LK V +TD G+DG+ + +FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R +TPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 VRLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120 Query: 120 RGHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A DL ++L ++TV G +I L +E++++E L+ +T+ M L Sbjct: 121 RTEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P+ +IDV + +LR+K+ G I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFGTP-LIHTIRNAGYMLRAE 226 >gi|169824516|ref|YP_001692127.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|167831321|dbj|BAG08237.1| two-component response regulator [Finegoldia magna ATCC 29328] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+K ++++ + L+ E F V G++ I++ ++ IILDL L I G Sbjct: 9 IKILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGE 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V+ +R + PV +++ ++ + GL+ GADDYI+KPF+ + LV +++ I+RR Sbjct: 69 KVMEVIRSRTET-PVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE 127 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +S++ D T G I LT E+Q+I+ L N T++ + Sbjct: 128 KLGLPKSDKIYFDNGRVSISFDDNTFIKDGESISLTSNEFQIIKTLFSNPNKIFTRDEII 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + ID I +R K+ + YI+T++G GY L Sbjct: 188 ELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233 >gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby] gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Corby] gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E FNV GE+G++ FDAIILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 123 AQSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + + V + G + LT E+ ++E+L +KE + Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224 >gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 229 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTNPDTSLMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LDVVKTVRKDSRI-PILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G L +N D+ V V G ++LT E+ ++ LL+ N + + Sbjct: 120 ENAVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FEKVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229 >gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K + ++ L SE + V G +G +L K EF+ I+LD+ L G E Sbjct: 3 KILIIEDNKDVNLLLKETLISEGYEVISAFDGLEGTKLAKSGEFNLILLDIMLPYKSGDE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV ILS + K+ L+ GADDYI+KPF+ E+ AR+ +RR+ Sbjct: 63 ILKEIRT-WGDVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V DL V + K V V G + LT KEY M+ELL N +K ++ Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + LR KL YIETVWG GY L Sbjct: 182 NEEYLGDDNAVKTHMSNLRSKLKKVNAEAEYIETVWGLGYRL 223 >gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 239 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 9/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +A+ + + L + GE + E+D I+LD+ L ++ G ++ Sbjct: 5 ILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPNMSGLDI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + +L+ +S D+V GL+ GADDY++KPF+ EL AR+R+ +R+ Sbjct: 65 CRKIRDERPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVHAL 124 Query: 123 AQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS + TGDL ++ V + + LT E++++ L+ ++ Sbjct: 125 RQSHVPSQQPDEALNTGDLRIDQKTHQVFLAEQELVLTATEFELLHHLASHPGQVFSRSQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ ++ I +LR KL N A ++TVWG GY Sbjct: 185 LLESVWGYHHSGYEHTVNSHINRLRAKLENDATSPKIVQTVWGVGYKFNPQG 236 >gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 260 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD + + L + +V + G + + D ++LDL L + G E Sbjct: 33 HVLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLGGLE 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V RALR P+ +L+ + +D++ GL+ GADDY++KPF+ ELV R+ +I R + Sbjct: 93 VCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRTAA 152 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V G L V+ A+ + G + LT +E+ ++ L T+E L+ ++ Sbjct: 153 PATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLSRVWG 212 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + V + +LR+K+ I T+WG GY Sbjct: 213 WEF-GDRSTVTVHVRRLREKVEADPTAPRRIATIWGTGYR 251 >gi|291522141|emb|CBK80434.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 232 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK +A+ +E+ L S + ++ DG+ L + Y+ I+D+ + I G E+ Sbjct: 7 ILVVDDDKEIANLVEIYLSSTGYKIHKAYNAVDGLALLQKYDIKLAIIDVMMPQIDGIEM 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R + P+ ILS S+ DK+ GL GADDY+ KPFN EL+AR+++ +RR Sbjct: 67 CRRIRT-CRNIPIIILSAKSADVDKILGLSVGADDYMIKPFNPMELLARVKSQLRRYLEL 125 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I D+ ++ V V G + LT E+ +++LL+ + + Sbjct: 126 NPGVVPDSNMIEVQDVVIDTKKHRVTVDGRDVVLTPIEFNILQLLASHPGRVFSTDEIYE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + + V + +LR+K+ I+TVWG GY + Sbjct: 186 NVWNEKLYEANNTVMVHMRRLREKVEKNPRSPQLIKTVWGVGYKIE 231 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + + L L+ + G + I + +D I+LD+ + + G+E Sbjct: 3 KLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ + D V+GL+ GADDYISKPF+++EL+ARI A++RRS Sbjct: 63 VCRQIR-KMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSNQ 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + I L + + V Q + +T KE+ M+ L N ++E L ++ Sbjct: 122 NQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTSIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLR 222 E E + ID I +R KL NA + +++TVWG GY Sbjct: 182 EVETEDRTIDSHIRNVRDKLRNAGFPVDSHLQTVWGVGYKWV 223 >gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 223 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + + + V G L + +FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL RK L++ H+Y Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKKL IETV G GY L E Sbjct: 181 HDSDRDSNTIEVFVGRLRKKLP-----PGSIETVRGLGYRLAE 218 >gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 222 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A IE L+S+ F V + FD +ILDLGL G + Sbjct: 3 RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR + PV IL+ I+DKV G ++GADDY++KPF EEL+ R++A +R+S Sbjct: 63 VLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++I +G++ ++L ++ V++ I L +E+ + E L++E L+ + Sbjct: 123 SQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LRKKL N IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGND-----LIETVRGMGYRLR 221 >gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] Length = 228 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ A+ +++L L+ E F V G+D +E + + ++LD L G Sbjct: 3 MTLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWMLPGKSGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + + + S DK+ GL+ GADDYI+KPF+ EL +RIR+++RR+ Sbjct: 63 EVCKELRQSSACGIIMV-TAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRRTA 121 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ V G I LT E++++ L+ R ++ + Sbjct: 122 PIQVEAPPLQRGDLLISETQCQVTRNGELIPLTPTEFKILLTLANRPGVVFSRLQLMKAA 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + +D + KLRKKL YI+TV+G GY E Sbjct: 182 MDDDFMNYERTLDSHVSKLRKKLEPDPDHMKYIQTVYGFGYRFGEP 227 >gi|323485093|ref|ZP_08090446.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163] gi|323401649|gb|EGA93994.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163] Length = 228 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD ++ +E ++ S V D G + L K + +D I++D+ L D+ GF+ Sbjct: 4 KVLIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLGDMEGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ LR I TPV I+SG + D + GL GADDYI+KPF L A+++A++RR++ Sbjct: 64 VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + N I L+ KE ++ L TK+M H+ Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEKEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I V+I +LR K+ +I TV G GY Sbjct: 184 WGTSVAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGYRFIP 228 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 10/238 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ LA + L E F V D G G E +D I+LDL L + G + Sbjct: 4 RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L LR ++TP+ IL+ + + V+GL+SGADDYI+KPF EL+AR+ A++RR+ Sbjct: 64 ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S I G+L + + V + G I L KE++++ LS + LT++ Sbjct: 124 GDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPDS-VHIDSIRGVGYKLVVNKKRSAS 240 >gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 240 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L + +E L + F V E + F ++LDL L G Sbjct: 7 KVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQKGNEIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRRRPA 126 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ +V G +NL + + + LT E+ ++++L ++++ Sbjct: 127 EVPGAPSQEEAEVVFGQYRLNLATREMYKGDEPVSLTSGEFAVLKVLVSNPREPMSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + + YI+TVWG GYV + Sbjct: 187 MNQARGRDYSALERSIDVQVSRLRRLIEDDPSNPRYIQTVWGLGYVFVPDG 237 >gi|325002114|ref|ZP_08123226.1| two-component response regulator [Pseudonocardia sp. P1] Length = 225 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F V G + + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTRALPAVRDMQPDVVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA VRR Sbjct: 64 VCRAIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARVRRIET 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G++ +++ A V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAEQLSIGEIDIDVPAHQVTRGGRPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 221 >gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] Length = 243 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I + L E+F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + + ++ ++ V++ G I++T EY ++ L++ KN T E Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKIGD 243 >gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555] gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555] Length = 232 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D++ +A IE+ LK+E F +Y + G+D + + + ILD+ L DI GF Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR Sbjct: 63 TLCQRIR-ENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 121 GHAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + +++D + +I LT KE+ ++ +L + ++ E Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + V I LR+K+ +A YI+TVWG GY + + Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 232 >gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] Length = 219 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L++ + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ V V G + LT EY++++ L +++ +++ + HLYD Sbjct: 121 GHATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDYLMHHQDSVVSRSELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKK+ IET+ G+GY LR Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGID-----LIETIRGQGYRLR 217 >gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD+ ++ + L + V G+ + D ++LDL L + G E Sbjct: 4 RVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ D+V GLQ GADDY+SKPF+ ELV R+ +++RRS Sbjct: 64 VCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGE 123 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L V + + GH + LT +E+ ++ L L + L + Sbjct: 124 PRTAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPARALGRAELLERV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + V + +LR+K+ + I TVWG GY Sbjct: 184 WGWNF-GDQSTVTVHVRRLREKVEADPANPHRIVTVWGIGYRYEP 227 >gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++ I+ L+ E + VY G +GI L EF +ILDL L DI G EV Sbjct: 4 ILVIEDEIKVSDVIKAYLEREGYKVYCATTGLEGIRLFNKIEFKLVILDLMLPDIDGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 +R + + ++ DK++GL GAD+Y++KP + EL AR+ A+ RR S Sbjct: 64 CSTIRRISNVHIFML-TAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSSA 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L +N D + V+++G I +T E+ ++ +L+ + L+++ + ++ Sbjct: 123 EEPEIISRDGLLVINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVFG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I +RKK+ YI TV GY Sbjct: 183 IDFEGSDRTIDVHIKNIRKKIERDTRFPKYIITVIKLGYKF 223 >gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 233 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 RIL+ ED+ + + + LK ++V + GED ++ + FD ++LD+ + I G Sbjct: 3 RILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F V + +R + + +L+ + DKV GL GADDYI+KPF+ EL AR+ AI RR Sbjct: 63 FTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRRV 122 Query: 120 RGHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G ++NL ++TV G I LT EYQ++E KNT L + Sbjct: 123 CMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPIELTQVEYQIMEFFMNNKNTALDRASI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LNH++ + KI+DV I ++R K+ YI T+WG GY + Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEEEPSNPKYIITIWGYGYKWND 231 >gi|225570827|ref|ZP_03779850.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM 15053] gi|225160289|gb|EEG72908.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM 15053] Length = 234 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++D+K + +E L+ + + G + + +C+ + D IILD+ L DI G Sbjct: 4 KILLVDDEKDIVDLLEETLRKDAAYEIKKAHTGAEALSMCREFHPDVIILDIMLPDIDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + + + S DK+ GL G DDYI+KPF+ E+ R++A +RR + Sbjct: 64 EICRQIRGFSYCSILFL-SSRDDDIDKILGLSGGGDDYITKPFSPREVAFRVKAQLRRQK 122 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G L+++ ++ V G I LTG+E+ ++ ++ ++KE Sbjct: 123 YQHSIPPQQEKLLPAGGLTIDSESCRVCKNGEEIELTGREFLLLSYMAENAGRIISKERL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I +R+K+ + + TV G GY L++ Sbjct: 183 YEQVWGEYSSICDNTIMVHIRHIREKIEDNPSEPELLVTVKGLGYKLKK 231 >gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 223 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A ++ L + GE G+ FD +I+D + G Sbjct: 1 MRILIIEDDLEAAAAMSHGLTEAGYQCVHAPDGEAGLTAAGKGGFDVMIVDRMMPKKNGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ LR +TPV LS + + D+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 EVVETLRREGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALSRRRE 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G+L +NL +TV QG I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P+ +IDV I +LR K+ + + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLDP 223 >gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 222 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A IE L+S+ F V + FD +ILDLGL G + Sbjct: 3 RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR + PV IL+ I+DKV G ++GADDY++KPF EEL+ R++A +R+S Sbjct: 63 VLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +I +G + ++L ++ V++ I L +E+ + E L++E L+ + Sbjct: 123 SQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LRKKL N IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGND-----LIETVRGMGYRLR 221 >gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis R1] Length = 222 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + LK+ + GE+ L +DA+ILD+GL + G Sbjct: 1 MRILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R S PV +L+ DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ Sbjct: 61 RVVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHIEEVIARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++ V V G I LT E++++ L + +++ + HLYD Sbjct: 121 GHATNSLSCGSVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDQIVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + I+VF+ +LRKKL IETV G GY Sbjct: 181 QDFDKDSNTIEVFVGRLRKKLGVD-----LIETVRGMGYR 215 >gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis HI4320] gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis HI4320] Length = 229 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ I +L+ F + + + D ++LD + G + Sbjct: 4 RILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V++ ++ + P+ +L+ EDKV+GL++GADDY+ KPF+ +ELVAR++AI R Sbjct: 64 VIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRL 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ +I LS++ + V Q I + E++++ ++E LN++ Sbjct: 124 SPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEQD-GHDRMIQTVRGTGYRF 225 >gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] Length = 231 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-EKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 223 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L+ + V GE+G L +DA++LDLGL ++ G Sbjct: 1 MRLLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 61 TVLEKWRRDGRVMPVLILTARDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + V+ + V V G I LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSYMMHHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LR+KL IETV G GY L Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGKD-----VIETVRGLGYRLAAPE 220 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ L+ + L +E + V V D G+ G E +FD I+LDL L + GFE Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 ++ LR + TPV IL+ ++ E+ V+GL+SGADDYI+KPF EL+AR+ A++RR Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S IV G L++ + V + G I L KE++++ L+ + +T++ Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLVVNKK 236 >gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01] gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B] gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01] gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B] Length = 239 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L + ++++ Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L + YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 11/232 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+++D+K +A +E+ L+++ F V+ G++ ++ + D ILD+ L DI Sbjct: 1 MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIMLPDID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF + + +R K PV +L+ DK+ GL GADDYI KPFN E++AR++ +RR Sbjct: 61 GFTICQKIR-EKYFYPVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQLRR 119 Query: 119 SRGHAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + Q L +N + G +I LT E+ ++ L + ++ Sbjct: 120 YTKYNQVETVVEEKEEHDIKGLVINKTTHECTLFGEKIELTPIEFSILWYLCENRGKVVS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ + + I +LR+KL +++TVWG GY + Sbjct: 180 SEELFEQVWGEKYYDSNNTVMAHIGRLREKLHEPPRKPKFVKTVWGVGYKVE 231 >gi|251797251|ref|YP_003011982.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544877|gb|ACT01896.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 11/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD +++ +I L+ E + V GE +E + ++ D IILD+ + + G+ Sbjct: 1 MKVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L K V +L+ + I DKV GL+ GADDY++KPF+ E++AR++ + RRS Sbjct: 61 EVFRKL-NQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSH 119 Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G LS+ ++TV + G + LT KE+ ++ L+ + ++++ Sbjct: 120 FTTFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKV 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++D + +D+ I +LRKKL G I+T+ G GY D Sbjct: 180 LLKKVWDIHYAGGTRTVDIHIQRLRKKLGRWHG---LIQTINGIGYKFISKPPD 230 >gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A + L+SE F+V + GE+ I L D IILD + + G EV Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + PV +LS S D VRGL++GADDY+ KP++ EL+AR+R R Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + D++++ + V + + L EY+++ L R +++ L+H++ Sbjct: 128 PASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L++ G + I TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIARLRKALTSHGGD-DPIRTVRGAGYAL 228 >gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] Length = 241 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQSQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G+ ++NL + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPTQQEEEVTFGEFTLNLATREMYHDEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 224 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC 29799] gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + +L+ + G + + Y++D I+LDL L + G E Sbjct: 6 ILVVEDDQDINRLLCKILEDGGYCCRPAFSGSEAMLWAGQYDYDLILLDLMLPGLTGEEF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + P+ +LS + +E +V L+ GADD+I KPF+ E++AR+ A +RR R Sbjct: 66 IAELR-KSRTMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQF 124 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ GDL ++ ++ +V G + +T +E++++ LL T+E Sbjct: 125 SSPAGEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYEQ 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ G + ++V I LR KL+ YI+TVWG G+ + E A+ Sbjct: 185 VWGGEYFGDDNTVNVHISNLRSKLAKV-SSAEYIKTVWGIGFKMNEEAQ 232 >gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes] Length = 232 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 7 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 67 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +Q + +G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 127 SQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFEK 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 187 IWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 231 >gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCRSLRSRSAV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + +++D V V G + L KE+ ++E L LT+ + Sbjct: 122 GGAEAEGGGGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEVDPSVPRHLITVRGLGYKF 227 >gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L +E + V G + L + ++ I+LDLGL D G Sbjct: 1 MKLLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDRDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R I PV IL+ ++ED+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 QLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ GDLS+NL ++ V + + LT KE+ ++ L +R + T+ +E LY Sbjct: 121 GRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D+ ++V I LR+KL I+TV G GY L E Sbjct: 181 WQDDTGSNTLEVHIHNLRRKLGKD-----RIKTVRGVGYRLEE 218 >gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + + + D ++LD+ L D+ GF Sbjct: 10 RLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPDMDGFA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR PV L+ + D ADDY++KPF+ EE++ARIRA++RR+RG Sbjct: 70 VAGRLREMGGQMPVVFLTARDA-TDDKVAGLRVADDYVTKPFSLEEVLARIRAVLRRTRG 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++ +A V G + L+ E++++ + L+K L+H++ Sbjct: 129 DLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPTEFKLLHYFMVNTGRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++ ++ LR+K+ I T+ G GYVLR Sbjct: 189 NYDFGGDAGVVESYVSYLRRKV--DVSEPRLIHTLRGVGYVLR 229 >gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] Length = 223 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+ + + L F+ E+ +++ + D ++D+ + + GFE Sbjct: 4 KIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R PV +L+ S +DK+RG G DDY++KPF+ +EL+AR++ I++R Sbjct: 64 LVEQMR-QYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +++ GD+ + D V Q IHL K++++ L+ N T+E + ++ Sbjct: 123 NSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I ++R+ L + G K + TV G GY + Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKIE 221 >gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ALA I ++L+++ F G + D ++LDL L I G E Sbjct: 5 KILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 65 VCRLIRDESDV-PIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ V G I LT E+ ++ L+ R T+EM L ++ Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + + ++++V + +LR K+ + TV G GY Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYK 222 >gi|284043027|ref|YP_003393367.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947248|gb|ADB49992.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 223 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ A+ ++E L+ + + V + G++ ++ DA++LDL + + G Sbjct: 1 MRILVVDDEPAVRTALERALRLDGYEVALAADGQEALDALAGVAPDAVVLDLLMPQVGGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A TPV +L+ I D+V GL +GADDY+ KPF EEL AR+RA++RR+ Sbjct: 61 EVCRRLRAAGDRTPVLMLTARDRIADRVSGLDAGADDYLVKPFALEELSARLRALLRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ A V I LT E+ ++ELL L + + H++ Sbjct: 121 ADEHDRLRFGDLVLDQAAHEVRRGEREIELTRTEFLLLELLLRHPRQVLPRSVIFEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++V++ LR+K + A I TV G GYVLRE Sbjct: 181 YDFGSTSNSLEVYVGYLRRK-TEAGDEPRLIHTVRGVGYVLRE 222 >gi|119486828|ref|ZP_01620803.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119456121|gb|EAW37254.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 824 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 1/234 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L+IE+D A AH I+ L + + V V GE G + + +D ++++ L + G Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R S P+ +L+ +S D V L++G DD++ KPF+ EL ARIRA++R R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ L ++ ++ V Q H + L+ KEY ++EL LT+ L HL+ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 +P + I +LR+KL IETV+G GY L+ ++ ++ L Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNAD-KIIETVYGVGYRLKPLSQSQSQAPLP 233 Score = 59.2 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 2/156 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL ++DD + + +L S V D E + + +ILDL + G E+ Sbjct: 530 ILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVEL 589 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + P+ LS + Q+GADDYISKPF + EL+ RI + R Sbjct: 590 CQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRIFNRLDRIH 649 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ 156 + ++ +HL+ + Q Sbjct: 650 LLRSLAETDPITGLANRRRSTHDLNRYLHLSQRHCQ 685 Score = 45.0 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP--G 59 R+L+I+DD L ++ + N + V E + + D ++LDL D G Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108 F +L L+ PV + + + D+ + G + ++SK + +++ Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQV 512 >gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I LK E F V G + + + + D +I+D+ + ++ G+E+ Sbjct: 4 ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDGWEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P +L+ K++G + GADDY+ KPF EL+AR++A+++R R Sbjct: 64 CAEIR-DHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRIA 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + GDL ++ V+V G + L KE++++ L+ + ++ + ++ Sbjct: 123 SSQTVQAGDLILDRKTYVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWGYD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR++ + I T+ G GY L Sbjct: 183 FEGNERTLDVHINRLRERFPE-SQHTFRISTIRGLGYRLE 221 >gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 224 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L + L+ + V G++G L +DA++LD+GL G Sbjct: 1 MRLLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGLPKKDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV IL+ DKV+G +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 SVLEQWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ A V V G+ + LT EY+++ L +++ + HLYD Sbjct: 121 GHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++VF+ +LRKKL I+TV G GY+ Sbjct: 181 QDFDRDSNTVEVFVGRLRKKLGVD-----VIQTVRGLGYM 215 >gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 223 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 1/217 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++DD ALA I L+LK+E F+ G+ I + + D ++LD+ L G EV Sbjct: 2 LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R PV +L+ S D V+GL+SGADDYISKPF +ELVARIRA +RR+ A Sbjct: 62 RQIRAESGV-PVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEPA 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + GDL +++ V G I LT E+ ++ L+ + ++E+ L ++ R Sbjct: 121 PERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWGYRH 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++++V + +LR K+ + + TV G GY Sbjct: 181 AADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGYK 217 >gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDASGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ A YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGYKIEK 231 >gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I++D L G Sbjct: 24 MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 84 SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDYSQP-LLKTIRGAGYMIKDEG 248 >gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 253 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE+ +E+ D ++LD+ L + GF V Sbjct: 13 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDGFAV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR Sbjct: 73 CRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL V+ + + V RI+LT E+ ++ELL + + Sbjct: 132 NAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 224 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 61 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYDGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268] gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268] Length = 244 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 22/240 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++A + L L+ E ++ + + GE+ ++ + IILDL L I G+E Sbjct: 6 KILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS DKV GL+ GADDY+ KPF+ +ELVAR++A++RRS+ Sbjct: 66 VCRRIRTSSNV-PIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQH 124 Query: 122 HAQS-------------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 I DL +NL V +G I + KE +++ L+ Sbjct: 125 VFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFLA 184 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N T+E L+H++ + + +DV I +LR+KL + I TVWG GY R Sbjct: 185 SSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKLPQV--EEWEISTVWGIGYKFR 242 >gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 237 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 3/234 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++++ L NF + V GEDG+ Y +DA I+D+GL + G Sbjct: 1 MRILLVEDDIELQNNLKQHLLDANFTLDVASDGEDGLFQGSEYIYDAAIIDIGLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR +I P+ IL+ S +DKV GL +GADDY++KPF+ EEL+AR+ A++RRS Sbjct: 61 ELITKLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G S+N V+ G ++L+ EY++ E L +K + + H+YD Sbjct: 121 GKASPLVYNGPFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 + + +I+VFI +LRKKL IET+ G+GY L+ A+ E ++ E Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQLGLIETLRGQGYRLKPLARGE--QHTE 231 >gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 225 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDD +A + L+ V G +G+ FD I+LD L + G Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L+ +R +TPV ILS + +++++RGL++G DDY+ KPF ELVAR+ A R Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +GDL+++L +TV G RI LT +E++++E L +T+ M L H++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ IID + +LR+KL IETV G GYV+R + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTP-LIETVRGTGYVVRPS 224 >gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1] gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1] Length = 224 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 8/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E +LK E F +++ G + + L K D ++LD+ L D+ G Sbjct: 5 KILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVMLPDLSGH 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ PV +S + D++ G GADDYI+KPF+ R Sbjct: 65 QLIK-EIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFS------AKEVAFRVKA 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + V + LT KEY+++ L N ++KE + ++ Sbjct: 118 RLKTTTKTIQFGNITITDGIVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I V I +LRKK+ +I T+ G GY Sbjct: 178 EDYFEFDNTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKFV 219 >gi|261410066|ref|YP_003246307.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286529|gb|ACX68500.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 247 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E + V G +E+ D ++LDL L G +V Sbjct: 9 ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A + P+ +L+ DKV GL+ GADDY++KPF+ E++AR++A +RR + Sbjct: 69 CREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKP 128 Query: 123 AQSLIVTGDLS------------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S TG S ++ D V G + LT +EY+++ L+ +T Sbjct: 129 DNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMT 188 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ YI T G GY++R Sbjct: 189 REHLLQAVWGFEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGYLMR 240 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K L +E +L E + V + D G G+EL + +D +ILD L G Sbjct: 1 MKILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR +TPV L+ +I+D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + DL ++ + + G I L+ KE Q++ L LT E H Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++P ++ + LR+K+ A I TV+G+GY EN Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIEAAGETP-LINTVYGKGYRFGEN 226 >gi|158336600|ref|YP_001517774.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306841|gb|ABW28458.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 227 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 114/223 (51%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +A + L+ +++ V V GE G + +++ I+LDL L + G Sbjct: 1 MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + S V +L+ ++ DKV GL +GADDY+ KPF +EL ARIRA+ RR Sbjct: 61 SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++ + LT KEY ++E L T+ M L+ L++ Sbjct: 121 QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I LR KL A G IET++G GY L Sbjct: 181 LDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNP 223 >gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6] gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus CMCP6] gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] Length = 239 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 13/234 (5%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +LL+ED+ + ++++ LKS+N+ V + G++G+E K + I+D+ + + Sbjct: 1 MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIMMPVMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + LR PV L+ + DK+ GL GADDYI+KPF EL+AR+ + +RR Sbjct: 61 GLTMTMKLR-EVSDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLRR 119 Query: 119 S---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + ++ G L ++ + K V V G + LT KE+Q++ELL Sbjct: 120 YEQILNLKGNIQKPNNQLIVGGLVLDQETKEVFVNGRSVRLTKKEFQILELLMSYPGKVY 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++ + I V + +LR+K+ Y++ VWG GY + + Sbjct: 180 SAEEIYESIW-EETAINTETIMVHVRRLREKIEANPKHPEYLKAVWGVGYKIEK 232 >gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + G +G++ ++D +ILDL L GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKVR-EVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I L ++ A+ V + G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 248 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L + V+ G + +++ E D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I + + + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 HVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] Length = 253 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED++ LA I + L + NF V+ L + D ++LD L D G + Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +L+ D V GL+SGADDY++KPF+ EL AR +A++RR Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 AQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++LD++ V + + LT KE+ ++ L+ ++ L+ ++ Sbjct: 143 TPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ++ I +LR KL++ G + ++TVWG GY Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium 2_1_46FAA] Length = 232 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGFE 61 IL+ +DDK + +IE+ L+ E +NV GE+ +++ + + D +++D+ + + G Sbjct: 4 ILVCDDDKEIVEAIEIYLRQEGYNVLKAYDGEEALKVLKREEKVDLLVIDVMMPRLDGIR 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +R P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 64 ATLKIREENSL-PIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTK 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G LS++ D K V V G + LT EY ++ LL + + + Sbjct: 123 LGSTVVQNNNTVYTVGGLSIDDDLKEVTVDGEPVKLTPIEYNILLLLMKNQGKVFSIDQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 YESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 231 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+K +A +EL L+ E + V G +G+ L FD ++LD+ L I G E Sbjct: 4 KILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSINGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ ++ D+V GL +GADDYI KPF EEL+ARIR I+RR Sbjct: 64 ICRRIRTQSQV-PIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ +++ A V VQG+++ LT EY +++LL KN T+E L ++ Sbjct: 123 EQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++DV+I LR KL +YIETV G GYV+RE Sbjct: 183 GYDTDIETNVVDVYIRHLRTKL--PGAMNDYIETVRGVGYVMRE 224 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 RIL++ED+ + + LK + V GE+ I++ + FD +LD+ + + G Sbjct: 3 RILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV R +R S + +L+ S DKV GL GADDY++KPF+ ELVAR+ A+ RR Sbjct: 63 FEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRRV 122 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + A S + +G +N+ ++TV G + LT EYQ++E NT L ++ Sbjct: 123 TVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTALGRQ 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LN ++ ++KI+DV I +LR KL +A ++ TVWG GY + Sbjct: 183 DILNKVWGEGYFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGYKWVQ 233 >gi|75908138|ref|YP_322434.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701863|gb|ABA21539.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + I L + + + G+ + L + + +ILD L D G+ Sbjct: 10 KILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNLPDTSGYS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + + ++ + V IL+G + DK++ L +GADD+I+KPF+ E+ R++A +R Sbjct: 69 LCQEM-QSRNNVLVMILTGRTEEADKIKILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ L++N + + V + ++LT E+ ++ L+ ++ + + Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++DV I +LRKKL + +I+TV G GY Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231 >gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 230 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A L++ +F V + G G+E FD +ILDL L I GF Sbjct: 3 KILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLMLPGIDGFN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV I+S + DK+RG GADDY++KPF+ ELVAR++A + R Sbjct: 63 VCRRLREELDI-PVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L++ + V G IHLT +E++++ L + ++E Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I ++R+K+ YIETV G GY Sbjct: 182 ERIWGLDAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGYRF 227 >gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016] gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 242 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D++ +A IE+ LK+E F +Y + G+D + + + ILD+ L DI GF Sbjct: 13 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR Sbjct: 73 TLCQRIR-ENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 131 Query: 121 GHAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + +++D + +I LT KE+ ++ +L + ++ E Sbjct: 132 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 191 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + V I LR+K+ +A YI+TVWG GY + + Sbjct: 192 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 242 >gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD 2210633] gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329] Length = 239 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKSLVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L + YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A + L+SE F+V + GE+ I L D IILD + + G EV Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + PV +LS S D VRGL++GADDY+ KP++ EL+AR+R R Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + D++++ + V + + L EY+++ L R +++ L+H++ Sbjct: 128 PASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L++ G + I TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIARLRKALTSHGGD-DPIRTVRGAGYAL 228 >gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL IED+ +A+ + LK + F V D G++G E+D I+LD+ L G Sbjct: 1 MHILYIEDEAKIANFVCAGLKEQGFVVDYIDNGDEGYYRAMENEYDVIVLDIMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR A + PV +L+ + ++D++ GL GADDY+SKPF EEL+ARI A++RR Sbjct: 61 AILKSLRRAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPFFVEELIARIHAVIRRIS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+++ G L+++ + V + LT +E+ ++E L T+ L H++ Sbjct: 121 GERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMRSPGRVFTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 P ++DV + +LRKK+ AG +I++V GY+ R++ K Sbjct: 181 YDFNPNTNLVDVCVQRLRKKIEKVAGDS-WIDSVRSVGYLFRKSGK 225 >gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 245 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+K+++ + + + E ++V G + +++ +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R S P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ RR Sbjct: 61 GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120 Query: 119 SR--------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163 + + I T +N + + + G I LT KE++++ L+ Sbjct: 121 AHTEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++E L ++ + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYKFDD 238 Query: 224 NAKD 227 + D Sbjct: 239 SEVD 242 >gi|218291330|ref|ZP_03495290.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238776|gb|EED05990.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 221 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + L L+ V V E +E + +D +++D+ L + G Sbjct: 1 MRVLIVEDEPGLVEFLRLELELSGVEVDVAMDAETALERARSQAYDLLLVDIVLPGMSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + P+ +L+ ++ D+V GL +GADDY+ KPF EEL ARIRAI R Sbjct: 61 DLCREVR-RFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIR-RRY 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ +V+LDA V +G + LT +EY ++ L N T +++ L ++ Sbjct: 119 EANGAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV+I LR+KL + YI+TV G+GY L Sbjct: 179 FQAPGDTNVVDVYIGYLRQKLDP---ERRYIKTVRGQGYRLEVEE 220 >gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01] gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01] Length = 217 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 136/223 (60%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD + ++ L+++ + V E+ + L + + +D ++LD+ L + GF Sbjct: 1 MRLLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L ALR PV +L+ + EDKVRGL+ GADDY++KPF+ EL AR+RA++RR+ Sbjct: 61 TFLEALRRQHKL-PVLMLTARDATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ G L+++L+ K V +G + L+G+EY ++E L+L +E+ L ++ Sbjct: 120 GEAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFLALNAGGVFPREVLLEKVWA 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G + + K++DV+I +LR+KL A IET G GY RE Sbjct: 180 GEEGVDPKVVDVYIYRLRQKLGQGA-----IETERGLGYSFRE 217 >gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIRAESGV-PVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ + I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225 >gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKNIDLVVLDIMMPIMDGWTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 73 SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+ ++ ++ Sbjct: 133 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ + IETV G GY L Sbjct: 193 YAGDDRTVDVHIKRLRERFATTPD--FRIETVRGLGYRLE 230 >gi|226229248|ref|YP_002763354.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092439|dbj|BAH40884.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD LA I L+ E++ V +LG+D I +DAI+LD+ L DI GF Sbjct: 1 MRLLVVEDDPKLARLIARGLREESYAVDTCELGKDAIAQAAVNSYDAIVLDVMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR I TPV +L+ ++ D++ GL SGADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 TVVQTLRTRDIRTPVLMLTSRDAVADRIVGLDSGADDYLVKPFDFGELLARLRALLRRPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + V G I LT KEY ++ELL+ L++ ++H++D Sbjct: 121 SLQAMQVRVADLEIDLQSHAVSRGGTPISLTAKEYALLELLARNVGRVLSRSDIVSHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++V++ +LR K+ I T G GY+L + Sbjct: 181 DNHDPFTNAVEVYVNRLRGKIDRDGHAP-LIHTRRGAGYILTD 222 >gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1] gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 234 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A +E+ L S+ + V+ + ++G+++ ++LD+ + + G Sbjct: 4 INILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCRKIR-ETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122 Query: 121 GHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 I L +N D V V I LT E+ ++ LL+ + Sbjct: 123 QLNPQSSALQGAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family protein [Fulvimarina pelagi HTCC2506] gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family protein [Fulvimarina pelagi HTCC2506] Length = 225 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ A + LK GE G+ + + ++D +I+D L G Sbjct: 1 MRILIIEDDRETASYLTKALKEAGHVADHAGDGETGLNMAEGRDYDLLIVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TP ILS + ++D+V GL++G DDY++KP+ EL+AR RR+ Sbjct: 61 SVIADLRKSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 121 TGEVETSYQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ G + TV G GY++R Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEREFDGP-LLHTVRGSGYIMR 222 >gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + + L+ ++V + G DG+ L ++FD I+LD+ + + G+ Sbjct: 1 MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV L+ I D+V+GL+ GADDY+ KPF+ ELVAR+R + RR Sbjct: 61 EVLRRLRKETDT-PVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + DL +++ + V G+RI LT KE+ +++L + L++ + + ++D Sbjct: 120 IHEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV + +LR K+ + I +V G GY Sbjct: 180 MNFDSDTNVVDVAVRRLRAKI-DDPFPLKLIHSVRGIGYRF 219 >gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51] gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 4/229 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +D+K + +E K E + ++ G +EL + + D ++LD+ + + GFEV Sbjct: 4 LLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKVDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ +++ GL GADDYI KPF+ E++ARIRAI+RR + Sbjct: 64 CREIR-KTSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRRISQN 122 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L +NLD V + + LT KE +++ L+ N +++ LN ++ Sbjct: 123 DEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLLNSVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ +D I +LR KL + + I+T+WG GY E +E Sbjct: 183 GYDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIWGVGYKFGEKTNEE 231 >gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101] Length = 227 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD +A ++ +L+ T G + + L + FD ++LDL L + G Sbjct: 1 MKVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCIL-SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR + P+ ++ + S++D V GL+ GADDY+ KPF L ARI+A++RR+ Sbjct: 61 EVCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q G L ++LD +T + LT KE+ ++E L T +K+ + + Sbjct: 121 SRPLQEDWSWGGLKLSLDGRTASFNQQDLRLTPKEHALLEALMKAGGRTCSKDQLIEAAW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D P + + + +R KL+ + IETV+G G+ L Sbjct: 181 AWADVPGDESVKTHVKNIRAKLNQTGAPADLIETVYGVGFRL 222 >gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067] Length = 229 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 111/221 (50%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + L+ E F V + GE ++L K D +++D+ + + G + Sbjct: 4 ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ + TP LS ++ ++++ GL GADDY+SKPF+ ELV R++ I R R Sbjct: 64 VMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRTKRS 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ + V V + LT KE+ ++ LL+ +K L ++ Sbjct: 124 SEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+V I LR+KL +I+TVWG GY Sbjct: 184 EYDGDANTINVHIHHLREKLQXXDEKVIFIKTVWGLGYKFE 224 >gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254] gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254] Length = 227 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K L I L E + V G+D ++ E+DAI+ D+ L I GF Sbjct: 1 MRILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R I TPV +L+ IED+V+GL GADDY+ KPF +EL+AR+R ++RR+ Sbjct: 61 EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120 Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ +L+VN ++ V I L+ +E+ ++E + K L++E Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H+++ E +IDV+I LR+K+ I T+ G GYVL+ Sbjct: 181 HIWNYDYEGGTNVIDVYIRYLRRKIDKDF-EPKLIHTIRGVGYVLKAE 227 >gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 262 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D+ L +E +LK E F + G DGI+ CK D ++LD+ + DI GF Sbjct: 32 KILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVMMPDIDGF 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R P+ LS S DK+ L GADDY++KPF+ +E+ RI+A +RR+ Sbjct: 92 DVCKRIR-EFSFVPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I GD+ ++ V G I LT KEY ++ ++ N LTK+M Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D E I V + KLR+KL YI TV G GY LR Sbjct: 211 CNEVWDDDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKLR 258 >gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 225 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219 >gi|323483855|ref|ZP_08089232.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163] gi|323402809|gb|EGA95130.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163] Length = 231 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-GFE 61 +L+++D+ A+ + + S + G + I + + + + I+LD+ + GFE Sbjct: 6 VLIVDDEPAIRKLLTRVAASCGYESLTASNGHEAIVMSRDSKINLILLDIMMNGNDEGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR + P+ +LSG + D + GL GADDYI KPFN L A+++A++RR Sbjct: 66 VIRRLRASGNEIPIIVLSGRTEDFDTLYGLDIGADDYIGKPFNPVVLGAKMKALIRRDMK 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G N + I L+ +E +++L TKE H+ Sbjct: 126 ASRPLPDFITAGPFCYNSMTMELFKDNRPIPLSSRENVLMKLFLCNAGRVFTKEQLYEHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G + I V+I LR K+ Y++TVWG GY Sbjct: 186 WNG-SVVDANTIMVYISHLRNKIEEDPKNPRYLKTVWGLGYKF 227 >gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IE+ LK++ + V+ G D +E + + D ILD+ L DI GF + Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVMLPDIDGFRI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ IL+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 65 CQKIR-EQYFYPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVRY 123 Query: 123 AQSLIVTGDLSV-----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + N + + G + LT E+ ++ L + ++ Sbjct: 124 NNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVISS 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + + I +LR+KL+ A +I+TVWG GY + + Sbjct: 184 EELFENIWGEKFLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235 >gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 222 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 136/223 (60%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD A+A +EL LK E F + + + GE G+ +FD I+LD+ L I G E Sbjct: 3 RILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVMLPKISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR +K +TPV +L+ + DKV GL SGA+DY++KPF EEL+ARIR I R Sbjct: 63 VLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFREKTT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G+L++N D V V+G + LT KEY+++ L + +N L++E + +++ Sbjct: 123 NNSLHW--GELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWGY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I+DVFI +R+KL + I+T+ G GYV+++N Sbjct: 181 EYYGDTNIVDVFIKNIRRKLEDVMDV-RMIQTIRGIGYVIKDN 222 >gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 222 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ + ++ L+ NF+ + G GI + K FD ++LD+ L D+ G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSGWN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 VL+ +R PV +++ S D++ G + GADDY+ KPF+ E++ARI+AI R Sbjct: 63 VLKTIR-ESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKW 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I ++++ D++ V+V G +I LT KE+ ++ LL+ L++E LN ++ Sbjct: 122 AESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + ++ I+TVWG GY L Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGD---KRDIIKTVWGYGYKL 219 >gi|307332348|ref|ZP_07611420.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306881995|gb|EFN13109.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 239 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 1/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +DD A+ S+E L+ F+V + D G + + D ++LD+ + D+ G E Sbjct: 8 RVLVTDDDAAIRRSLERGLRLNGFSVTLADGGHAALAAVRDGAPDVVVLDISMPDLSGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR PV +LS + + D+V GLQ+G DDY+ KPF +ELV R+ A++RR Sbjct: 68 VCRALRGDGNDVPVLMLSALDEVSDRVAGLQAGGDDYLVKPFALQELVLRLHALLRRRPP 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + G L + +A+ + G + LT +E+++++ + LT++ L+ ++ Sbjct: 128 AATDRVRAGALEMAPEAQGAWLDGTPLRLTRREFELLDTFARNAGIVLTRDQLLDRVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +D F+ LR+KL A G + TV G G+VLR + E Sbjct: 188 DFEVRTDAVDTFVSYLRRKLE-AGGRPRMLHTVRGVGFVLRPSGPPE 233 >gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L + + V GE I++ K + +ILD+ + + G+ Sbjct: 5 KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 E + +R P+ +L+ S D++ G + G D+YI+KPF+ + LVARI AI R S Sbjct: 65 ETCKTIR-RYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRRGS 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + V+ DA V V G + L+ KE++++ K L++E LN+++ Sbjct: 124 GTSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ID + KLR KL I+TVWG GY L + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGPKGDN---IKTVWGMGYKLEVDG 226 >gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L E + V G + +E+ + E +ILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R TPV +L+ S D+++G + G D+YISKPF+ + LVAR+ AI R Sbjct: 65 QVCREIR-QSSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSH 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ +I G + +N A V+ +G +I L+ KE++++ + L++E LN+++ Sbjct: 124 VLGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ID + KLR KL + NYI+T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKG---NYIKTIWGMGYKFEVEE 226 >gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G++ ++L K YE D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKD-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237 >gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F+ + G + + + + + D ++LDL L + G E Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++R + P+ +L+ S D V+GL+SGADDY+ KPFN +ELVARIR +R + Sbjct: 64 VCSSIRAESGT-PIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL V++ V RI LT E+ ++ L+ + T+EM L ++ Sbjct: 123 APPAEQLCIGDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + TV G GY Sbjct: 183 YHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGYR 222 >gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 235 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ ++ + L+ + F+ ++T+ DG++ + + D IILDL L D G EV Sbjct: 7 VLIIEDERDISRIVNDYLRVQGFSTFITENARDGLQGVRNRQPDFIILDLTLPDADGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S P+ ILS SS DKV L GADDY++KPF+ ELVAR++A +RR Sbjct: 67 CRELRT-LTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMADP 125 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q L+ G LS++ A+ V I L+ KE+ ++ L+ N TK L+ Sbjct: 126 KLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E I V+I +LR+KL + YI TVWG GY + + Sbjct: 186 VWGYSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGYKFDPDETE 235 >gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 253 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ ++ +L E + V D +++ + E D +ILD+ + I GFE Sbjct: 29 ILVVDDDRFANTLVQFVLSKEGYEVETADNPRGALQMIQKREPDLLILDVTMPYINGFEF 88 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ P+ ++ +IE K++G GADDYI KP+N +ELVAR++A++RR + Sbjct: 89 SAKLKAEGYEIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIKKS 148 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G + + V V G + LT E ++ +L + ++ L + Sbjct: 149 GKTGNQSIRGGQIELFPAELKVAVTGKQPVTLTPTEMHVLRVLMHSAGQVVNRDQLLAEV 208 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +E I+DV+I +LR KL + YI +V G GY Sbjct: 209 WN-DNENNSNIVDVYIRRLRVKLEDDPDKPLYILSVRGVGYKFV 251 >gi|291543807|emb|CBL16916.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 263 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+ + +I +L+ E V G + +E + I++D+ + + G Sbjct: 27 VLVADDDRDIVRAIATLLEQEGLTVLRAYNGLEALEAVAEHPVSLILIDVMMPKLDGLSA 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + + P+ ILS S DK+ GL GADDYI+KP++ +EL AR+++ +RR Sbjct: 87 MMKIR-EQKNIPILILSAKSEESDKILGLSMGADDYIAKPYHPQELAARVKSSLRRYLHL 145 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q LI G L + D + + V G + LT KE +++EL + E Sbjct: 146 GAADSARMQKLIRVGGLEYDPDTRQLTVDGEPVRLTSKELKIMELFLRNPGRIFSAEEIY 205 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++ + V I +R+K+ NY++ VWG GY L++ A Sbjct: 206 SRVWNEDAYAVENTVMVHIRHIREKIEINPREPNYLKVVWGIGYQLQDPA 255 >gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 272 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +EL D ++LD+ + + G+ V Sbjct: 35 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYGV 94 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 95 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 153 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++ + + V RI LTG E+ ++ELL R + L Sbjct: 154 QVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 213 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 214 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 261 >gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] Length = 235 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IE+ L+++ + V+ G D ++ + D ILD+ L DI GF + Sbjct: 5 ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDIDGFRI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 65 CQKIR-EQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVRY 123 Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + L +N + + G + LT E+ ++ L + ++ Sbjct: 124 NNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVISS 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + + I +LR+KL+ A +I+TVWG GY + + Sbjct: 184 EELFENIWGEKFLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235 >gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 248 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 78 VMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ D+ V I LT E++++ L L+K L+ + Sbjct: 138 SEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA-KDETC 230 ++ + I++++I LR+K+ G + I T+ G GYVL+ A DE Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPAAGADERA 248 >gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL + K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPSGYQKD-IQTVRGIGYILKEQ 223 >gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 226 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S P L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAHQS-PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 221 >gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 245 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 7/241 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHTEILNYGPLTLVPERFEAIWFDKTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L ++T E Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPKYIKTVYGAGYCLELPNTEKTLEVTS 242 Query: 235 T 235 Sbjct: 243 A 243 >gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] Length = 227 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 2 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 62 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLSV+L ++ V G+RI LT KE+ ++E L + + + ++ Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ N G I+TV G GY+L Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGT-KLIQTVRGVGYMLE 223 >gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + +++ LK+E+F ++ + G+ E+ + + D +ILDL L DI G Sbjct: 3 KILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDINGLN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R P+ +++ ++ +DK+ GL GADDYI+KPFN E++AR++A +RR + Sbjct: 63 ICKSIRTK-YKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + + ++ + G + LT E+ ++E+L L + L+ E + Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L + + V I LR+K+ + YI+TVWG GY++ Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYIIE 228 >gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 232 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L + + GE+ I++ + + ILD+ L + G+E Sbjct: 5 KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLPGMSGYE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V +R T + ++S S DK+ GL+ GADDYI KPFN +EL+ R+R+++RR Sbjct: 65 VCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVNL 124 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ + G ++++ AK+ I +T E+ +++ K +T++ Sbjct: 125 SQARPKDDSKENLTDGPFTLDIYAKSFYKNNKEIDVTPTEFTILQNFIKNKGKAMTRDEI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ + +IETVWG GY + Sbjct: 185 MTQTWGENYSNDTKIVDVNIRRIRAKIEDNPAKPEFIETVWGTGYRWK 232 >gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] Length = 248 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V+R +R + + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR Sbjct: 78 VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S S++ GDL ++ D+ V G I LT E++++ L L+K L+ + Sbjct: 138 SEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPAA 242 >gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L S++ L+ + V + GED + + +D +ILD+ L + GF Sbjct: 1 MRILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILLPGLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ + +E +V+GL GADDY++KPF EL AR+RA++RR Sbjct: 61 EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + D++++ V+ I L KEY ++E + L++ M + H++D Sbjct: 121 PVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G E +IDV+I LR+KL N I+T+ G GY L+E Sbjct: 181 GDTEHLSNVIDVYIRYLRRKL-CNENEPNVIQTIRGSGYQLKEP 223 >gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 237 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDDK + +E+ LKS+ + V+ G +G+++ E I+D+ + + G Sbjct: 5 HILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEEIHLAIVDVMMPRMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV ILS + DK+ GL GADDYISKPF EL+AR+ + +RR R Sbjct: 65 MTVKLR-EKYDFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYRK 123 Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + V G L +N D V V G LT E++++ LL + Sbjct: 124 YLDMLEAKELKEKSNIYVIGGLELNEDTVEVTVDGKPAKLTPIEFKILALLMKNPGRVFS 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +++ R I V + K+R+K+ Y++ VWG GY + + A Sbjct: 184 AEEIYERVWNERA-INTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEKQA 237 >gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 246 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR P+ +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ + +++ I V I LR KL YI+TV+G GY L + ++ Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSTEQ 236 >gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 226 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E +DV I +LR K+ + I TV G GY L+ A Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFENKLIMTVRGMGYRLQAEA 222 >gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 248 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G + ++L + E D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+K +A I+ L+ E + VT G++ I++ + FD +ILDL L + G E Sbjct: 7 RVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLPGLSGEE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R+ P+ +L+ D++ GL GADDY++KPF+ +EL+AR+RAI+RR+ Sbjct: 67 ICNRIRLQ-SDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSN 125 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GDL V++ +G + LT E++++ + ++E + Sbjct: 126 EGVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDV I +R K+ YI TV+G GY + Sbjct: 186 VLGYDYVGYDRTIDVHIKNVRHKIE--CEQYKYIVTVYGVGYRFVK 229 >gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E G+ + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R + Sbjct: 64 VCRQIRAESGV-PIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ +V G + LT E++++ L+ + T+E+ L ++ Sbjct: 123 RPPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGYR 221 >gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 226 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L+ ++ L+ + V GE+ L +D +ILDLGL I G Sbjct: 1 MRILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA+VRR+ Sbjct: 61 SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ L+V G + ++ A V G + LT EY+++ + L ++ +++ + HLYD Sbjct: 121 GHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKK+ IETV G GY L+ Sbjct: 181 QDFDRDSNTIEVFMGRLRKKIGT-----ERIETVRGLGYRLKP 218 >gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] Length = 226 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++L+ + +L E F+V V G + D ++LDL L G EV Sbjct: 4 ILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGADLVLLDLMLPGQSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +L+ + DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 64 CKQIR-QRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRRRAEP 122 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + T G + ++++ V V G + + KE++++E+L LT+ ++ ++ Sbjct: 123 EELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLIDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ +I TV G GY Sbjct: 183 GSDYVGDTKTLDVHVKRLRSKVEPDPSAPQHIVTVRGLGYKFEP 226 >gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 226 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PAFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 221 >gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 276 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K LA + L+ + V +T G ++ + +E D ++LDLGL + G E Sbjct: 54 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 113 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A V +L+ ++ GL GADDYI+KPF+ ELVAR+ A++RR R Sbjct: 114 VCRRVR-AFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 172 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GDL ++L A V G + LT E+ ++ LS R + ++ ++ + Sbjct: 173 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 232 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +++DV I LR+KL YI+TV G GY + E Sbjct: 233 WDPAWVGDERLVDVHIKNLRRKLDADPA--RYIDTVRGVGYRMAEQ 276 >gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter turnerae T7901] gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB [Teredinibacter turnerae T7901] Length = 235 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 114/225 (50%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++A+ + + L+ ++ V ++ ++ D I+LD + + G E Sbjct: 5 KILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMPGVSGIE 64 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 65 FARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRRS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I +L ++ + V + G + L EY+++E + ++ L+++ Sbjct: 125 DSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQLLDYV 184 Query: 179 YDGRDEPEVKIIDVFICKLRK--KLSNAAGGKNYIETVWGRGYVL 221 + G E + +DV I +LRK KL ++TV G GY Sbjct: 185 WGGNVYVEERTVDVHIRRLRKALKLE---NHDRLVQTVRGAGYRF 226 >gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++D+ + + L+ ++V G + + + E D ++LD+ + + GFE Sbjct: 15 HLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLDGFE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-----IV 116 V+R LR PV L+ ++EDKV GLQ+G DDY++KPF+ +ELVAR+RA Sbjct: 75 VVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSGH 134 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R +++ DL +N D+ V G + L+ E++++ L ++K L+ Sbjct: 135 REQAAAEPAVLKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLLS 194 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + +++ ++ LR+K+ G + TV G GYVLR Sbjct: 195 AVWNYDFAGDAGVVESYVSYLRRKV--DTGEPKLLHTVRGVGYVLRTP 240 >gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219 >gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 228 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL + K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPSGYQKD-IQTVRGIGYILKEQ 228 >gi|257066704|ref|YP_003152960.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798584|gb|ACV29239.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 237 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++ED+K ++ ++ L + ++V+ G +E+ + D +ILDL L + G Sbjct: 4 INILIVEDEKTISDIVKNYLIKDGYHVFQAFDGVKALEIFNEEQIDLVILDLMLPMLSGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV I S D+++GL+ GADDY++KPF+ +ELV R++A++RR Sbjct: 64 EVLKDIRNKSQV-PVIITSAKVEEFDRIQGLRLGADDYVTKPFSNKELVERVKAVLRRIE 122 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L ++L G I LT E+ +++ L N T++ + Sbjct: 123 KYNIPRADIIKTNDGRLLMDLKYNRFLKDGREISLTKNEFSIVKTLFSSPNKIFTRDEII 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + YI+T++G GY Sbjct: 183 ELTFGLDYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227 >gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 232 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR +I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRSKIDRGFEHP-MIHTVRGAGYVIRPDEP 229 >gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL + D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 234 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + F+VY + G + + + + DA I+D+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ S++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNA 127 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L D V G + L+ E+ ++ L + L+K L++ Sbjct: 128 VDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGDTPLIHTVRGVGYVLRTP 232 >gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + + N+ G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R + Sbjct: 61 KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQ+ + G+L + L + V + G I L KE+Q+++ L N +++ + ++ Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRQ 223 >gi|315644225|ref|ZP_07897395.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280600|gb|EFU43889.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 243 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E ++V G +E+ D ++LDL L G +V Sbjct: 5 ILVVDDEQPIADILKFNLEKEGYDVICAFDGISAVEIALTKRPDLMLLDLMLPGKDGMDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A + P+ +L+ DKV GL+ GADDY++KPF+ E++AR++A +RR + Sbjct: 65 CREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAQMRRQQKP 124 Query: 123 AQSLIVTGDLS------------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S TG S ++ D V G + LT +EY+++ L+ +T Sbjct: 125 DNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV I +LR+K+ YI T G GY++R Sbjct: 185 REHLLQAVWGFEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGYLMR 236 >gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] Length = 229 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + +L E +N E + D I+LD L I G ++ Sbjct: 5 ILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWMLPGISGVDL 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + P+ +L+ EDKVRGL GADDYI+KPF+ EL+AR++A+ R + Sbjct: 65 ARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRRSA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ ++ L ++ + + + G + + E++++ ++ ++H++ Sbjct: 125 PLLSREVVEVDGLKLDPSSHRLSIGGLPLEMGPTEFRLLHFFITHPERVYSRGQLIDHVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G I+TV G GY Sbjct: 185 GDNVYVEERTVDVHIRRLRKSLEP-SGHDRLIQTVRGVGYRF 225 >gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 223 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+ + ++ K E F V+ + G G+E+ K D +ILD+ + + G+ Sbjct: 1 MNILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMIPYLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V +++R P+ +L+ EDK+ G + GADDY++KPF+ + LVA+++A+++R Sbjct: 61 KVCKSIR-DLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSV 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++I L +N + V++ G I L+ KEY ++ K+ L+++ L+ Sbjct: 120 IDIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDR 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++ +D + +LR+KL + + NYI TV G+GY N Sbjct: 180 VWGFDYDGGLRTVDTHVKRLREKLKDKS---NYIVTVRGKGYKFEVN 223 >gi|154496215|ref|ZP_02034911.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC 29799] gi|150274298|gb|EDN01375.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++++ L SE + + G + +++ + ++LD+ + + G Sbjct: 7 ILICDDDKDIVSALDIYLTSEGYKTFKAYDGLEALKVVDQQDIQLVLLDVMMPGLDGIRT 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR + P+ +L+ S DK+ GL GADDYI+KPFN E++AR+++ +RR Sbjct: 67 TAKLR-ESKNIPIILLTAKSEDSDKILGLNIGADDYITKPFNPIEVIARVKSQLRRYTTL 125 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I G ++++ AK+V V G + LT EY +++LL + Sbjct: 126 GGREKTEDNVIRNGGIAMDDGAKSVTVDGESVSLTPIEYNILKLLLKSPGRVYSTSQIYE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I LR+K+ YI+ VWG GY + + Sbjct: 186 QVWNDPSLGSENTVAVHIRHLREKIEIDPANPRYIKVVWGLGYKMEK 232 >gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L] gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L] Length = 229 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V+I LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYIHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 239 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + ++L++E + V GE + + D IILD+ + + GF+ Sbjct: 14 RILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAEDM--DLIILDVMMPKMDGFK 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R + P+ L+ + +DK G SG DDY++KPF+ EL+AR++A++RR Sbjct: 72 ACRQIR-EVTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 130 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I+ DL ++ ++ V+ + ++LT EYQ++ LL+ + + Sbjct: 131 YKGKEEPQEGDQIIMHDLIISRNSNQVKKKEEAVNLTEMEYQILLLLADHPKKIFSNQEL 190 Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G I V I LRKKL YI+TVWG+GY Sbjct: 191 YEAIWKGPYMYSANNTIMVHIRNLRKKLGVDPQNPVYIKTVWGKGYRF 238 >gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 227 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +LA + +LK E F+ + G + + D ++LDL L + G +V Sbjct: 4 VLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV +++ + DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CRRLR-QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G +S++++ V V G ++ + KE+ ++E L LT+ ++ + Sbjct: 123 DGSVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ + TV G GY Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226 >gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402] gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402] Length = 250 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 18/240 (7%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 MR IL++ED+ +A +IE+ LKS+ +NVY+ + G+ G+E+ + Y+ I+D+ + Sbjct: 13 MRMNQDNILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMP 72 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G E+ +R P+ LS S DK+ GL G DDY++KPF EL+AR+ + Sbjct: 73 VMDGIEMTMKIR-ENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQ 131 Query: 116 VRRSRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 +RR + + V G L ++LD K V V G + +T E +++ELL + Sbjct: 132 LRRYHKYLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEK 191 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +++ + + V + LR+K+ Y++ VWG GY + + Sbjct: 192 PGRVFSSEQIYENVW-HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEKQ 250 >gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] Length = 236 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD + + L F V V + +E D ++LD+ L GFE Sbjct: 8 RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ LR + PV L+ ++ED+VRGL+ G DDY++KPF+ E+ AR++A++RR Sbjct: 68 ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRARG 127 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DL ++ V G + L+ EY+++ L + L++ L Sbjct: 128 GAPAPEETTGLRCADLEIDDPRHEVRRAGEPVDLSPTEYRLLHYLLSHQGQVLSRAQILE 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + +++ F+ LR+K+ G + + TV G GY LRE A Sbjct: 188 AVWQYDFGGDTVVVERFVSNLRRKI--DQGREPLLHTVRGVGYTLREQA 234 >gi|329946281|ref|ZP_08293875.1| putative response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527573|gb|EGF54568.1| putative response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 242 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D+ + S+ L+ + V + G + ++L Y+ D I+ D+ + + G E+ Sbjct: 13 VLLVDDEAPIRRSLGPYLERSGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDGREL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R TP+ +L+ + + +++ L GADDY+SKPF+ EL +RI A++RR+RG Sbjct: 73 VRRVRAGGAWTPIILLTQVDASYERISALDDGADDYLSKPFDPAELASRICAVLRRTRGM 132 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 AQ +V G+L + ++ V + G + LT K +++ L T+E L Sbjct: 133 AQPLTSASRLVAGELVLERTSRRVTLAGREVALTPKATVLLDYLMSHPGELHTREDLLAS 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + +D I ++R+ L + A YIETV GY R + Sbjct: 193 LWGIDFATSTRAVDHRIREIRQALGDDAANPTYIETVPSVGYRFRAGVR 241 >gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 239 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + F V + G+ +E+ + + +A ILD+ + + GFE Sbjct: 11 KVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDGFE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 71 LLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 130 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +L D V G + L+ E+ ++ L L L+K L++ Sbjct: 131 TETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILDN 190 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 191 VWHYDFGGDGNVVESYISYLRRKV--DQGEPQLINTVRGVGYVLRTP 235 >gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD + ++ L+ + + V + G DG+ + D I+LD+ L + G Sbjct: 1 MKTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIMLPKMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + V +R PV ++S + S ED+++G + DDYI KP + ++ +I A++RR Sbjct: 61 YTVCEMIRQE-SEIPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIRRY 119 Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++++ +D V+V I+LT KEY++++ L + ++++ FLN Sbjct: 120 ENKGLEKKEELHYKEMTLMVDNYRVKVGKKDINLTQKEYEILKELLENQGRVISRDSFLN 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ E + +D I LRKKL +A NYIETV G GY + + Sbjct: 180 RLWRYEYVGEERAVDNHIKNLRKKLGDAG---NYIETVRGVGYRVEK 223 >gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 247 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +LA + + L+ ++V V G + +++ + Y D ++LD+ L G Sbjct: 22 IRALVVDDEPSLAELMSMGLQMAGWDVQVAHDGNEALKIAREYRPDVLVLDIMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL--VARIRAIVRR 118 E+L +R+ + P L+ +++D+V GL +G DDY++KPF+ EE+ Sbjct: 82 ELLGKIRLFAPNIPALFLTAKDAVQDRVAGLTAGGDDYVTKPFSMEEVLLRLHRIVQRAG 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GDL +N D + V + LT E++++ L ++K L+ + Sbjct: 142 VIAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLRYLMENPKRVISKTQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V I++++I LRKK+ I TV G GY+L+ Sbjct: 202 WNYDFGGQVNIVELYISYLRKKIEAN--HPPMIHTVRGAGYILKP 244 >gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 233 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 73 SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+ ++ ++ Sbjct: 133 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ + IETV G GY L Sbjct: 193 YAGDDRTVDVHIKRLRERFATTPD--FRIETVRGLGYRLE 230 >gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 226 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 221 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + + L+ E + V G + + + + DA++LD+ L D+ G Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGLT 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 81 LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 141 AAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG I T G GY+++ Sbjct: 201 WSYDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLIKP 243 >gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 228 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED + L+ + +L+ E F+V + G G+ +E ++LDL L + G EV Sbjct: 4 VLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + LR + P+ +++ + DK+ GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKKLR-QSSTVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G++ ++++ +V V G I + KE+ ++E L + LT+ ++ Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K +DV + +LR K+ + +++ TV G GY Sbjct: 183 RVWGLDYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGYKFE 228 >gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 231 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 118/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ L+ + L++E + V + G++ + + D ++LD L + G E Sbjct: 3 KVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLPGLSGIE 62 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R PV +L+ +++RGL +GADDY+ KPF+ EL+AR+RAI R Sbjct: 63 LCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ +GD+ ++ + V G IHL E++++E L ++E L+ + Sbjct: 123 RPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK ++ K+ I TV G GY + Sbjct: 183 WGHDVYVDERTVDVHVGRLRKAINR-GKVKDPIRTVRGAGYAFNDQ 227 >gi|323693531|ref|ZP_08107735.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum WAL-14673] gi|323502386|gb|EGB18244.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum WAL-14673] Length = 228 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD ++ +E ++ S V D G + L K + +D I++D+ L D+ GF+ Sbjct: 4 KVLIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLGDMEGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ LR I TPV I+SG + D + GL GADDYI+KPF L A+++A++RR++ Sbjct: 64 VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + N I L+ KE ++ L TK+M H+ Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEEEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I V+I +LR K+ +I TV G GY Sbjct: 184 WGTSVAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGYRFIP 228 >gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 229 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 7 RLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGIS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL + R K PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS G Sbjct: 67 VLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSTG 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 HAQS + G + ++ V V G+ I +T EY+++ L +++ + HLYD Sbjct: 127 HAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYDQ 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL I+TV G GY+L D Sbjct: 187 DFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLAPPTTD 227 >gi|325578292|ref|ZP_08148427.1| two component response regulator [Haemophilus parainfluenzae ATCC 33392] gi|325160028|gb|EGC72157.1| two component response regulator [Haemophilus parainfluenzae ATCC 33392] Length = 240 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 19 MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLPKLDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++++G+Q GADDY+ KPF E+V R++A++RR Sbjct: 79 EVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRRY 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G++ ++ + + I LTG+EY+++EL L K L++ L + Sbjct: 139 GQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLSN 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 199 WDEELSSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 234 >gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL++D+ + +EL L +E F+V G I L + + I+LD+ + + GF Sbjct: 7 IRILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R ++ V +L+ ++D+V+GL GADDY+ KPF+ +EL+ARIRA +R Sbjct: 67 ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G S++ K ++ +G + L+ EY++++ + L+K L+ ++ Sbjct: 127 PMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDKVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I++V++ LR KL + I T+ G GY + Sbjct: 187 YDFGGEENIVEVYVRSLRDKLGD--KEHRLIRTLRGAGYRI 225 >gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I + E +++ G + I+ C+ +FD II+D+ + D GF Sbjct: 3 KILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVMMPDTDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ PV +LS + DK+ G + G DDY++KPF+ EL+ARI+ I+ SR Sbjct: 63 ACKKIK-EFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRN 121 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q + ++ TV V G + LT KEY ++ LL K L+++ LN Sbjct: 122 AEQKSDSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +D I LR KL + ++ I+TV G GY Sbjct: 182 VWGYDSFGVDRTVDWQIKLLRSKLGDY---RDSIKTVRGVGYKFE 223 >gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 227 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A PV +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+S DLS++L ++ V G+RI LT KE+ ++E + L + + ++ Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226 D + + IDV + +LR K+ + I+TV G GY+L +A+ Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKI-DNDYEPKLIQTVRGVGYMLEVPDAE 227 >gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016] gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 232 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I L+ + V+ G + ++L + I+LDL L DI G + Sbjct: 6 KILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLMLPDISGED 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR P+ +L+ + + G GADDY++KPF+ ++LVAR+ A +RR+ Sbjct: 66 ICKMLRKKSRV-PIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRRTEE 124 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A GDL +N+ V G ++LT EY ++ L T T+E +N Sbjct: 125 EAIPLSNILSFNNGDLVLNVIKHEVRKNGITVNLTSSEYNILMTLVKYPQKTFTREELVN 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +IID + LR+K+ + + YI TV+ GY Sbjct: 185 LALEEDFNGFDRIIDAHVKNLRQKIEDNSREPKYILTVYKVGYRF 229 >gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K LA + L+ E + + G +G+E + + D I+LDL L + G +V Sbjct: 4 VLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFGTDV 63 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ++ ++ PV +L+ DKV G + GADDY+ KPF+ EL+ R++A++RR Sbjct: 64 CKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRKA 123 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I G + ++ + V V G I+ T E++++ L +R ++++ L + Sbjct: 124 PEPAATNIINVGGIRIDTERHEVTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I +LR K+ NA + I+TV G GY L Sbjct: 184 WGYNFVEDTRTVDTHITRLRTKMGNAG---DMIKTVRGFGYKLE 224 >gi|70730005|ref|YP_259744.1| transcriptional regulatory protein RstA [Pseudomonas fluorescens Pf-5] gi|68344304|gb|AAY91910.1| transcriptional regulatory protein RstA, putative [Pseudomonas fluorescens Pf-5] Length = 236 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD+ LA I L F V G+ + ++ ++LDL L G Sbjct: 8 KVLLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTALAAFLEFKPKLVVLDLMLPGQSGLH 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ IL+ D + GL+SGADDY+ KP L+AR+RA+ RR Sbjct: 68 VCREIR-AVADTPIVILTAKEDDLDHILGLESGADDYVIKPIKPAVLLARLRALQRRQVP 126 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L G LS++ +++ V + G + LT E++++ LL+ TL+++ LN + Sbjct: 127 ETTTLRGALAFGVLSIDRNSREVRLAGEPVELTTMEFELLWLLASAPGKTLSRDDILNRM 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +DV+I KLR KL + I+TVWG+GY+ A + Sbjct: 187 RGIEFDGLNRSVDVYISKLRGKLKDNPREPVCIKTVWGKGYLFNPFAWE 235 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD + I +LK E F+V G D +E + D +LD+ + + G+E Sbjct: 3 KILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R P+ +L+ S + KV+G + G DDY++KPF +EL+ RI+A++RR + Sbjct: 63 FCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYKV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +I G+L ++ + TV + + KE++++ +L TL+++ + ++ Sbjct: 123 AASRIINIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWGL 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +DV I +LR++ + I T+ G GY + E Sbjct: 183 DFEGNERTLDVHINRLRERFQSDIYKFK-ITTIRGLGYRVEE 223 >gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 244 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 5/237 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++ED+ + ++ L+ E + V GE ++ + + +LD+ L DI G E+ Sbjct: 6 IYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPDIDGLEL 65 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ +L+ DKV GL+ GADDYI+KPF+ E++AR++A++RR Sbjct: 66 CKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAVLRRVT 125 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I GD+ +N + V ++ LT KE+++++LL L K L+++M L Sbjct: 126 EIGAEEEEEIRQGDIVMNCSRREVYKGSRQLDLTLKEFELLKLLLLNKGRVLSRDMLLEK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 ++ + E + +DV I LR+K+ YIETV G GY + E + Sbjct: 186 IWGYEYQGETRTVDVHIRYLRQKIEEDDNNPLYIETVRGIGYRFSDKVSRTDSETTK 242 >gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612] gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612] Length = 231 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +D++ + ++EL LK+E ++++ G++ +E+ I++D+ + ++ G Sbjct: 1 MNILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIVSENTIHLILMDIMMPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +R + P+ LS + DK+ GL G DDYI+KPFN E++AR+++ +RR Sbjct: 61 HATLKIR-ETANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRRYT 119 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + TG L ++ K V V G + LT EY++++ L + E Sbjct: 120 TLGSYVKRTDVYKTGGLELDDAYKKVTVDGEEVKLTPVEYKILKFLMREMGKVFSIEQIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V + ++R+K+ Y++ VWG GY + + Sbjct: 180 ENVWEEPSYNADNTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKVEK 227 >gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 247 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ ++ +E L+ + V TD G+ + + ++LD+ L D+ GFE Sbjct: 13 RLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDGFE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ L+ + +D+++GL G DDY+SKPF+ EE++ RI AI+RR+ Sbjct: 73 VTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTAP 132 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S++ DL ++ A V G I L+ E++++ L ++K L+ Sbjct: 133 VDAALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQILD 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 H++ + +II+ ++ LR+K+ I+TV G GY LR + E Sbjct: 193 HVWSYDFAGDARIIETYVRYLRRKI--DCFEPPLIQTVRGVGYCLRLPREHE 242 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 129/233 (55%), Gaps = 11/233 (4%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 M+ +L+++D+ + + + L+ EN+ V + GE+ +++ +E D IILD+ + D Sbjct: 1 MKNAFCVLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPD 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + GF + +R K P+ +L+ S DKVRGL+ GADDY+ KPF+ +EL+AR+ A++ Sbjct: 61 MDGFTACKKIR-EKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALL 119 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RRS ++ +++V A+ V V G RI+L +EY ++ L + ++E + Sbjct: 120 RRSNQAFFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHD 179 Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E + +D + LR KL +A I+TVWG GY + +DE Sbjct: 180 VIWGLDTEKGSYRTVDTHVKTLRFKLKDAGAK---IKTVWGIGYKF--DGEDE 227 >gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] Length = 230 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ L+ ++ L++E + V V G++ + D ++LD L + G E Sbjct: 3 KVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWMLPGLSGIE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R + + PV +L+ +++RGL +GADDY+ KPF+ EL+AR+RAI R Sbjct: 63 LCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +L+ +GD+ ++ + V IHL E++++E L ++E L+ + Sbjct: 123 SPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLDGV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK L+ K+ I TV G GY + Sbjct: 183 WGHDVYVDERTVDVHVGRLRKALNR-GKAKDPIRTVRGAGYAFNDQ 227 >gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 252 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I+D L G Sbjct: 28 MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGTENAYDVAIIDRMLPRRDGL 87 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 88 SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L DL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 148 TPDQDVLYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 252 >gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 235 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D++ + + L L+ + +Y G + E+ + D I+D+ + I G+ + Sbjct: 4 ILIADDEEEIIELLSLYLEKDKHCIYSAVNGLEAFEIISNNKVDIAIIDIMMPKIDGYHL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R K P+ +LS S DK+ GL GADDY++KPFN E+VAR+ A +RR Sbjct: 64 IKKIR-EKYDIPIIMLSAKSEYSDKILGLDLGADDYVTKPFNAMEVVARVNAQLRRYNKL 122 Query: 123 AQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ G+L +N++ T+ ++LT EY++I L K TK+ Sbjct: 123 KKNTYVNLKEKKSYLECGNLRLNINTCTLYKDNVEVYLTSTEYKIISYLLENKGRVFTKK 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + I V I LR K+ + + YI+T+ G GY L N Sbjct: 183 QIFEYVWEEPFYGDDNAIMVHISNLRDKVEDDSKNPKYIKTIRGLGYKLDAN 234 >gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] Length = 234 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+A+A + L L E F+ + GE + Y + ++LDL L I G++ Sbjct: 6 KILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRARANT-PIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + +NL +V V G + + KE +++ L+ N T+E Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + G K + TVWG GY Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWK--LATVWGIGYKFE 232 >gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] Length = 234 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++A+ ++ L+ E +NV + G +G+E + Y D I+LDL L + GF V Sbjct: 15 ILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLMLPKMNGFSV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 A+R P+ +L+ + +++G + ADDYI+KPF+ +V I A++RR+ Sbjct: 75 CEAIRKE-SQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQG 133 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL+++ D+ TV V+ + LT +E+++++LL + T+E L+ ++ Sbjct: 134 AGVETNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSIW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + KI++ I +RKKL YIET+ G GY + + Sbjct: 194 GYDYFGDEKIVNTHIKNIRKKLGVD-----YIETIRGAGYKIEKE 233 >gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3] gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 241 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQSQ 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+ ++NL + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237 >gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1] gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum aromaticum EbN1] Length = 248 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 7/237 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD L + L+ + F V FD ++LDL L G Sbjct: 11 RVLLVDDDARLRDLLSRYLQEQGFTVKAVVDAPSMDRALHREHFDLMVLDLMLPGEDGLT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + + P+ +L+ D++ GL+ GADDY++KPFN ELVARI A++RR Sbjct: 71 ICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHAVMRRQPP 130 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G + VNL +++ I LT E+ ++++L L+++ Sbjct: 131 SLPGAPTSEDEIVSFGRVRVNLGVRSLTRDEDEIALTTGEFSLLKVLLQHPRQPLSRDKL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + IDV + +LRK + + YI+TVWG GYV + E Sbjct: 191 MELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVFVPDDTKAASE 247 >gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 270 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G++ + + D +ILD+ L D GFE Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR V L+ + DK+ GL G DDYI+KPF EEL+AR+RA++RR+R Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A D+ ++ DA V + L+ E+ ++ N L++ L Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + E ++D ++ LR+KL G I T G GY LR Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQH--GPPLIHTQRGFGYALR 246 >gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2] Length = 240 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+AR +A++RR Sbjct: 67 ICRRLRQMGNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRNS 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I G+ +NL + + + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSKDVQVIEFGEYKLNLATREMTAGTTPLTLTSGEFAVLKSLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ L YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEKDPANPRYIQTVWGLGYVFVPDGE 238 >gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 224 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++++I+ L F V D ++ + IILDL L D+ G E+ Sbjct: 5 ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLMLPDMFGSEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR + P+ +LS ++ +KV L GADDY++KPF +EL+ARIR+++RR G Sbjct: 65 LKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKNGF 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G V+ + + QG+ ++LT EY+++ L T ++E ++ ++ Sbjct: 125 GLVVEK-GPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGEE 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++DV+I +LR+K+ ++T G GYVL Sbjct: 184 YFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVLE 223 >gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MR+LL+EDD+ + + I L V + G+ G+ L +FD IILD L + G Sbjct: 1 MRVLLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPGGVEG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ LR TPV +LS ++ +++KV GL++G DDY++KPF+ EL AR+ A+VRR+ Sbjct: 61 LHILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R AQ GDL ++L ++ V G +I L +E++++E L +T+ M L Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P+ +IDV I +LR+K+ + + T+ GY+L+E Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKI-DRPFHHPLVHTIRNAGYMLQE 225 >gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA ++ L +E + V V G D + + + AI+LD+ L + G+ Sbjct: 3 RILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNGYR 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR STP+ +L+ +D++ L +GADD++ KPF+ L++R+RA++RR Sbjct: 63 VCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGGA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL ++ ++T G I LTGKE+ ++ L R +TK L++L+D Sbjct: 123 TRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWDF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++V + LR+K+ + G I TV G GY Sbjct: 183 AASATANLVEVHVSALRRKI-DVPFGAETIRTVRGAGY 219 >gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 224 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+ + F G++ + + D ++LD+ + + G+ + Sbjct: 4 ILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIMMPTMDGWTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ +KV+G + G DDY++KPF+ EL R++A+++R R Sbjct: 64 CKELRKMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G ++++ V I L KE++++ L+ T+E ++ ++ Sbjct: 124 HSQTIQLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + IDV I +LR++ +I+T+ G GY L Sbjct: 184 YAGDNRTIDVHIKRLRERF--NTITDFHIDTIRGLGYRLE 221 >gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9] gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9] Length = 229 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+ I L V E L K D ++LD L G E Sbjct: 5 ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQSGIEF 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR + + P+ +L+ S +DK+ GL++GADDYI+KPF+ EL ARI+A+ RR+ Sbjct: 65 ARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L ++ V G + L E++++ ++ L+ ++ Sbjct: 125 PQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LR L +G ++TV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRSALEP-SGHDALVQTVRGTGYRF 225 >gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 223 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A + L + GE+G++ + EFD +I+D + + G Sbjct: 1 MRILIVEDDLEAAGVMVRGLTEAGHDCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TPV LS + + D+V GLQ+GADDY+ KP+ EL+ARI A+ RR Sbjct: 61 TLVETLRREGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRD 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G+L ++L A+TV G I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGSVNTLLRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ +IDV I +LR K+ ++TV G GY L Sbjct: 181 HYHFDPQTNVIDVHISRLRSKIDKGFDRP-MLQTVRGAGYRL 221 >gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 238 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L L+ E V G+DG+ + +DA++LDL L + G E Sbjct: 6 RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQS L ++ A+ + G + LT +E+ ++ + + ++ L Sbjct: 126 LAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + E ++ I +LR K+ I TVWGRGY E + E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVERNPAQPTRILTVWGRGYKFAEAGERE 238 >gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 HVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCKMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISHA 123 Query: 122 HAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ + + V+ + LT +E+ ++ L +N L +E + ++ Sbjct: 124 IKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ I TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKIDCNVDVP-LIHTVRGVGYVLK 226 >gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ L + L++E F V G++ + D ++LD + + G E Sbjct: 4 RILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVPGLSGIE 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R P+ +L+ D+VRGL +GADDYI KPF+ EL+AR+RA+ R Sbjct: 64 LCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H L+V GD+ ++ + V +G +HL E++++E L ++E L+ + Sbjct: 124 KPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LRK ++ + I TV G GY E Sbjct: 184 WGHDVYIDERTVDVHIGRLRKAINR-PRRPDPIRTVRGSGYSFDE 227 >gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] Length = 224 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK + + L+ E V + G+D + +D +I+D L + G Sbjct: 2 MKILVVEDDKMTGNYVAEGLREEGHTVDLMTDGKDALLQASTTSYDILIVDRMLPGLDGV 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V++ +R K TPV L+ + ++D++ GL +G DDY+ KPF EL AR+ A R Sbjct: 62 SVVKTMRGTKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 122 GTQDEIVLRAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +++ I +LR K+ + I+TV G GY + E Sbjct: 182 DISFDPQTNVVETHISRLRAKV-DKPYEVELIKTVRGAGYRIEE 224 >gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 223 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + I+ L+ + V ++ G +G E K +D IILD+ L I GF Sbjct: 3 KILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLPKISGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ IL+ + +++++G ADDYISKPF+ + L+ R+ A++RR Sbjct: 63 VCEMIRKESHV-PIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNE 121 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L D+ ++ +A V + LT KE++++ +L K LT+E+ LN Sbjct: 122 SFANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ + +++D I LR+KL YI+T+ GY L N Sbjct: 182 LWGYDFYGDERVVDTHIKNLRRKLGVD-----YIQTIRKVGYKLEGN 223 >gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+K+++ + + + E ++V G + +++ +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R S P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ RR Sbjct: 61 GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120 Query: 119 SR--------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163 + + I T +N + + + G I LT KE++++ L+ Sbjct: 121 AHTEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++E L ++ + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYKFDD 238 Query: 224 NAKD 227 + D Sbjct: 239 SEVD 242 >gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] Length = 236 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 14/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + +I++ L ++ +NV+ + G++G+E+ + I+D+ + + G + Sbjct: 5 ILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR Sbjct: 65 TMRLR-ETYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQI 123 Query: 123 ------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + V G L ++ D K V V G+++ LT KEYQ++ LL + Sbjct: 124 LNLKHSSIKEEENSNRYVVGGLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVYS 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + I V I KLR+K+ +YI+ VWG GY + + Sbjct: 184 SEQIYEQVWN-EKAINTETIMVHIRKLREKIEVNPKKPHYIKVVWGIGYKMEK 235 >gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134] gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134] Length = 232 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + ++ L+ + V + G++ I++ K + I++D+ + + G E Sbjct: 8 KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVE 67 Query: 62 VLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R LR L+ ++ GADDYI+KP L++RI A+ RR Sbjct: 68 AGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRRE 127 Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + Q I G+L+++ ++ V I L KE++M+ L+ N +++ Sbjct: 128 QKKHQKNEKKDKIQVGNLTIDRESYIVYNDKTPITLPKKEFEMLFFLAQNPNKVFSRDEL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L +++ + +DV I K+R+K+ YI+TV G GY L + Sbjct: 188 LQNIWGTDVYVLARTVDVHIRKVREKIG-----GGYIKTVKGVGYKLVTD 232 >gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314] gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 240 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + FNV G +G+++ + + DA ILD+ + + GFE Sbjct: 14 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++E+++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 74 LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 133 Query: 122 HAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L V G + L+ E+ ++ L L L+K L++ Sbjct: 134 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ I+TV G GYVLR Sbjct: 194 VWHYDFGGDGNVVESYISYLRRKV--DTHEPQLIQTVRGVGYVLRTP 238 >gi|304407984|ref|ZP_07389634.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343003|gb|EFM08847.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 231 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD + L L E + V +G+ + + + ++LDL L D G Sbjct: 3 KVLIIEDDNIFGDMLSLYLTEEQYEVTRVPSAGEGLRALQEFAPNVVLLDLMLPDTEGIN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR + P+ ++S + + +++ L GADDY+ KPF+ +EL ARI A++RR+ Sbjct: 63 ACAMLRG-FTTIPIIVISAETKVSERILSLSEGADDYLCKPFSMQELKARIEAVLRRTNM 121 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +++ + + G+ I T E+++I+LL ++E Sbjct: 122 QSAVIAPPAAPNADEWTLVLDMARRLLICNGNEIETTFSEFEIIKLLYHNPGKVFSREEL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +N + + IDV I LRKK+ YI+TVWG GY Sbjct: 182 INAIRGIDSYINERAIDVHITNLRKKIEQNPKEPQYIKTVWGVGYK 227 >gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL + D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ Sbjct: 65 CRRIRKESEV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 227 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +LA + +LK E F+ + G + + D ++LDL L + G +V Sbjct: 4 VLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV +++ + DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CRRLR-QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G +S++++ V V G ++ + KE+ ++E L LT+ ++ + Sbjct: 123 DGAVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ + TV G GY Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226 >gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 221 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + + FD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] Length = 235 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN NVY G + + + +FD ILD+ L DI G Sbjct: 4 KILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYKK 123 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +++ L++N+ + G + LT E+ ++ +L RK + ++ E Sbjct: 124 YNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAED 183 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+ + G YI+T+WG GY + + Sbjct: 184 LFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGYKIED 234 >gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] Length = 225 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219 >gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 248 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G + ++L + E D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEKE 129 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 15/234 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ + H + L LK + G DG+ L D ++LD+ L I GFE Sbjct: 4 KILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ +L+ S+ +D++ GL+ GADDY+ KPF+ ELV+R+RAI+RR Sbjct: 64 VCRRIR-AWSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122 Query: 122 HAQSLIVTGDLSVN-------------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 ++ + + + L A+ VEVQG + LT E+ ++ L++ + Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+E+ +N ++ + IDV I LRKK+ A + YI+TVW GY Sbjct: 183 FTREILMNKVWGYDYLGDGHTIDVHISALRKKIE-AGEQQRYIKTVWRVGYRFE 235 >gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 248 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ + + L+ E + VY G +G +L ++ D I+LDL ++ G+E Sbjct: 12 RILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKDGWE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ D++ GL GADDY++KPF+ ELV R++ I++R Sbjct: 72 LCEEIRQQSNV-PIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I DL + + V V +++ LT KE++++ +++ ++ Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++D + + V + +LR+KL +I TVWG GY N +E Sbjct: 191 LELIWDFEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPNGGNEITR 247 >gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 225 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ + + L E F V GE+G+ L ++ D ++LD+ + G+E Sbjct: 4 KILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A S P+ +L+ + D+V+GL GADDY+ KPF EEL+ARIRA++RRSR Sbjct: 64 VCRRLR-AGSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ DL+++ + V G I LT +E++++ L LT++ ++ ++ Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++V++ LR+KL G K I TV G GYVL+E Sbjct: 183 GIDYGGESNVLEVYVGMLRQKLEE-GGEKRIIHTVRGVGYVLKE 225 >gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] Length = 229 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ I +L+ F + + + D ++LD + G + Sbjct: 4 RILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V++ ++ + P+ +L+ EDKV+GL++GADDY+ KPF+ +ELVAR++AI R Sbjct: 64 VIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRL 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ +I LS++ + V Q I + E++++ ++E LN++ Sbjct: 124 SPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEQD-GHDRMIQTVRGTGYRF 225 >gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 234 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED +A+ I+ L+ E+F + G +EL K + D IILDL L + G Sbjct: 1 MNILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV +R + +L+ D+V GL +GADDY+ KPF+ ELVAR+RA++RR Sbjct: 61 EVCTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTTLT 170 S H + + + ++ LT E+ ++ + Sbjct: 121 SLRHGGQPKNVYQTAHFIVDLDRHIATRKLDNESEETLELTTLEFSLLSTFMSYPGRVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + L+ + +++D I +LRKK+ +I+TV G GY +N Sbjct: 181 RSQLIEKLWGDDFFGDERVVDTHIRRLRKKIEPDTANPTFIKTVVGIGYKFEDN 234 >gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila] gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila 130b] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E FNV GE+G++ FDAIILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 123 AQSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + + V + G + LT E+ ++E+L +KE + Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224 >gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 237 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D++ ++ ++L L E + V + G +G+E + +D IILD+ L +I G EV Sbjct: 5 VLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEINGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 L+ +R TP+ +++ ++ DKV GL GA+DYI+KPF EEL+AR+RA +R Sbjct: 65 LKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLEP 124 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 QS + L + ++V +G RI LT KE+ ++ L KN L ++ Sbjct: 125 AATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHRD 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + ++DV+I +RKK+ + K I+TV G GY +RE Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKI-DHGYKKKLIKTVRGVGYCIREE 235 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S DL ++ + V+ I LT +E+ ++ L +N L +E + ++ Sbjct: 124 VKEEQNSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ I TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LIHTVRGVGYVLK 226 >gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 240 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 11/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD + + + L E ++V GE+G+ + + + D ++LDL L D+ G Sbjct: 3 KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++R + P+ ILS S + ++V+ L++GADDY+ KPF+ E+ AR+ A++RRS+ Sbjct: 63 VCASIR-ERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQF 121 Query: 122 HAQSLIVTGDLSV----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A + + + + V+G I T E++M++L ++ Sbjct: 122 SATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +N + + IDV I LRKK+ I TVWG GY + E Sbjct: 182 EELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTDHSQE 238 >gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I++ LKS FN + G++ L Y D ++LD+ + + G + Sbjct: 7 KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +++ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIRKQGER-PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSV 125 Query: 122 HAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V DL ++ + V G I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV + +LR+KL + G + IETVWG GY Sbjct: 186 GYDYPGDSRTVDVHVKRLREKL--SGGEQWQIETVWGVGYKFE 226 >gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 +++L+++D+ + ++ L E + V GE +++ + +ILD+ + + G Sbjct: 14 IKVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDG 73 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +E L+ +R PV +L+ + D+++G G D+YI+KPF+ + LVAR+ AI R Sbjct: 74 WETLKEIR-KFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRT 132 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S ++ + G + ++L A V + G + L+ KE+++++ + + L++E LN++ Sbjct: 133 SDAASEERLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNV 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + ID + KLR K+ +YI+T+WG GY Sbjct: 193 WNYDYYGDARTIDTHVKKLRSKMGAKG---DYIKTIWGVGYRFE 233 >gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper resistance [Serratia marcescens] gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894] gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1] gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044] gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator [Escherichia coli ATCC 8739] gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii TW07627] gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR gi|619132|emb|CAA58529.1| pcoR [Escherichia coli] gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper resistance [Serratia marcescens] gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1] gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894] gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii TW07627] gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli ETEC H10407] gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509] gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ L E + + + G DG+ ++D IILD+ L + G++ Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV + +LR K+ + I TV G GYVL Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDF-EPKLIHTVRGAGYVLE 222 >gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+++ + ML+ E F V G DG+E D ++LDL + +PG E Sbjct: 3 RVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + + S DKV GL+ GADDY++KPF+ ELVARIRA+ RR Sbjct: 63 VCRQLRQRGNVRIIMV-TARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++++ V V+G + L KE+ ++E+L +T+ ++ + Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I +LR K+ + I TV G GY + Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEKDSSRPVRITTVRGLGYKFQ 225 >gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+L+S+ F + + G+ +E+ + IILDL + DI G EV Sbjct: 8 VLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLMMPDISGEEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R P+ +L+ D V GL GADDY+ KPF +EL ARI A++RR+ Sbjct: 68 CRAIRKKSRV-PIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRRTESD 126 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ GDL + + V +G + LT E +++ +L T+E + Sbjct: 127 LVPLVKRNSWRNGDLVTDFEKNEVRKKGVSLTLTPSELKILSVLIKYPGKVFTREELIEA 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + ID I +RKK+ + Y+ T+ G GY + + Sbjct: 187 ALDKGFAGYDRAIDSHIKNIRKKVEDDPKNPVYVRTIPGLGYKFGGDGE 235 >gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-QKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + + ++ V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ G I TVWG GY + + Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 129/228 (56%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ ++ ++L L+ E + V G G E+ E++ ++LD+ L ++ G E Sbjct: 4 RVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A PV +L+ ++ DKV G + GA+DYI+KPF EEL+AR+R I+R + Sbjct: 64 VLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQ 123 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I GDL++ L + V + I LT +E++++ L KN ++E L+ Sbjct: 124 YPKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E ++DV+I LR+KL + I TV G GY+++E Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKL-DKGYRHKLIHTVRGVGYMIKEP 230 >gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 221 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + FD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSM-PIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36] gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36] Length = 234 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED + +A+ I + L+ V +D + + F I+LDL L D+ G + Sbjct: 4 HVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ P+ +L+ + D+V+GL++GADDY++KPF+ EL AR++A++RRS Sbjct: 64 ICKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRRSNV 123 Query: 122 HAQSLIVTGDL-----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + ++ +V I LT E+ ++ L+ ++E L Sbjct: 124 QAIKNVEPEQIKIADLVIDQATHSVYRNKQLITLTSTEFSLLAFLAKSPGRVYSREQLLA 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ ++ + +LR K+ YI+TVWG GY L Sbjct: 184 EVWDYHNDCYEHTVNSHMNRLRNKIEPNPAKPTYIKTVWGVGYKLE 229 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 132/230 (57%), Gaps = 6/230 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL+I+DD+ + + L E ++VY G +G+ + + D IILD+ + + Sbjct: 1 MRSAILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFEV R LR + PV +L+ +E++V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 GFEVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR 120 Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ D+ ++LD++ V G R+ LT KE++++ L LT+++ + Sbjct: 121 KDSGSRSGSQRLIFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIM 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ E +++V+I LR+K GGK I+T+ G GY+LR A Sbjct: 181 DKIWGYDYSGESNVLEVYIAMLRQKTEEH-GGKRVIQTIRGAGYILRGEA 229 >gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 238 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 14/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + GE+ I + Y+ + I+LDL L I G+E Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREVR-KTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + DL +N +V G I + KE ++ L+ N T Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L+H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFE 234 >gi|114046179|ref|YP_736729.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113887621|gb|ABI41672.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 253 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED++ LA I + L + NF V+ L + D ++LD L D G + Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +L+ D V GL+SGADDY++KPF+ EL AR +A++RR Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 123 AQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + ++LD++ V + + LT KE+ ++ L+ ++ L+ ++ Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ++ I +LR KL++ G + ++TVWG GY Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219 >gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 230 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + D G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LDVVKTVRKDSRI-PILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G L +N D+ V G ++LT E+ ++ LL+ N + + Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + ++ LK+E + V V G D I L +F AIILDLGL D+ G Sbjct: 1 MRVLLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGLPDLNGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR A + TP+ +L+ +++DKV GL+SGADDY++KPF EEL+ARI A++RR Sbjct: 61 QVCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRS 120 Query: 121 GHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + ++ N + V I LT KE+ ++E L++ L Sbjct: 121 GEIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P ++DV+I +LR+K+ + ++TV G GY L Sbjct: 181 VWGYSADPLTNVVDVYIRQLRRKIDDDYEL-KLLKTVRGFGYKL 223 >gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 228 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + +EL L++E F V G + + ++ I+LD+ + + GFE Sbjct: 8 KILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + +L+ +ED+V+GL GADDY+ KPF+ EEL+ARI A +R Sbjct: 68 VCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQFP 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +V G ++ K + + L+ EY++++ L L L+K L+ ++ Sbjct: 128 ALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL++ I T+ G GY Sbjct: 188 DFGGEENIVEVYIRSLREKLND--REHRLIRTLRGAGYR 224 >gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 234 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ L + L++E F V G++ + D ++LD + + G E Sbjct: 4 RILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVPGLSGIE 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R PV +L+ D+VRGL +GADDYI KPF+ EL+AR+RA+ R Sbjct: 64 LCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H L+V GD+ ++ + V +G +HL E++++E L ++E L+ + Sbjct: 124 KPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LRK ++ + I TV G GY E Sbjct: 184 WGHDVYIDERTVDVHIGRLRKAINR-PRRPDPIRTVRGSGYSFDE 227 >gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345] gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 241 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+ S+NL + + I LT E+ ++++L L+++ Sbjct: 127 EVPGAPTQQEEEITFGEYSLNLATREMHHGEESIALTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + A YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDGQ 238 >gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 121/220 (55%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K++ I++ L+ E + VY G + IEL + + +ILD+ L + G+EV Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ + ++ V +L+ + ++DKV+GL GADDY++KPF+ +EL+ARI A +R S Sbjct: 71 CSIIKKSIKTS-VIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPE 129 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G+ V+ A + + + L +Y ++ L + L+K + L ++ Sbjct: 130 LSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYD 189 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I++V+I LR K+ + N I+TV G GY + Sbjct: 190 FNGEDNIVEVYIRYLRDKIGD--KDHNIIKTVRGVGYKMV 227 >gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 223 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I E + + G IELC+ + FD IILD+ + ++ GF Sbjct: 4 ILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVMMPELDGFST 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R TPV +LS D++ G + G DDY+ KPF+ +EL+ R+ AI++R+R Sbjct: 64 CHEIR-KICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKRTRKA 122 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LS+N A TVE+ G RI L+ +E ++ + KN L+++ + ++ Sbjct: 123 ETESDAFIYERLSINFAAHTVEIDGQRIDLSPRESDLLFYMVRNKNIALSRDKLMQEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D + LRKKL + I TV G GY Sbjct: 183 YDFYGDDRTLDTHVKLLRKKLKEYS---RLIVTVRGVGYRFE 221 >gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 230 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + L++E + V G + + L + D I+LDLGL D+ G E+ Sbjct: 8 ILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGLPDMDGEEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 LR L + V +LS S DKV L GA DY++KPF+ EL ARIR +RR Sbjct: 68 LRTL-PVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRRGGSD 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S G+LS++L+A ++G +HLT E++++ L+ +T L ++ Sbjct: 127 GESPPSRYTFGELSLDLEAHVASLKGEDLHLTPTEFKLLAYLARHAGKVVTHSQLLREVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + + + I KLR+K+ + Y+ T G GY L + Sbjct: 187 GKQSQGQEHYVRIHIHKLRQKIESDPARPRYLHTETGIGYRLVD 230 >gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis z3032] gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis z3032] Length = 231 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ L E + + + G DG+ ++D IILD+ L + G++ Sbjct: 8 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 68 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 128 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV + +LR K+ + I TV G GYVL Sbjct: 188 NFDSDTNVIDVAVRRLRSKIDDDF-EPKLIHTVRGAGYVLE 227 >gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1] gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1] Length = 225 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + LK++ V GE + +D ++LDLGL G Sbjct: 6 MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGV 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 66 EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL + I V G GY++ + A Sbjct: 186 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKEA 225 >gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2M] gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2] gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2] gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2M] Length = 225 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ + F V + G G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ + D+ GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 SVLKRLR-DTHATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + A I TV G GY L Sbjct: 180 MNFDSDTNVVEVAIRRLRAKV-DDAFPLKLIHTVRGVGYALE 220 >gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 223 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ A I L+ GE+G+E+ + E+D +++D + + G Sbjct: 1 MRILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ ALR TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 61 SMVEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRD 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V GDL ++L A+TV +G I L +E++++E L +T+ M L ++ Sbjct: 121 PDTVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ + ++ + TV G GY L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKI-DKPFPRSLLHTVRGAGYRLQ 222 >gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ DD + I + L++E + V G + ++L + F+ +ILD L + G Sbjct: 4 ILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLIRSISFELVILDSMLPQMDGINA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R +TP+ +LS DK+ GL GADDY+ KPFN EL+AR++A ++R Sbjct: 64 CIKIR-EISNTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQRQSLI 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + SLI DL ++ +V ++ + I LT E+ ++ELL+ + + + Sbjct: 123 GKEEFNSLIFFKDLVIDKTKHSVTLKENNISLTPLEFSILELLASHPGQVFSFDKIYESV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LR+KL + YI+TVWG GY + Sbjct: 183 WEDPIGYSDNTVMVHIRNLREKLEKSPRDPQYIKTVWGVGYKI 225 >gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 224 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 98/222 (44%), Gaps = 8/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E +LK E F +++ G + + L K D ++LD+ L D+ G Sbjct: 5 KILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVMLPDLSGH 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ PV +S + D++ G GADDYI+KPF+ R Sbjct: 65 QLIK-EIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFS------AKEVAFRVKA 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + V + LT KEY+++ L N ++KE + ++ Sbjct: 118 RLKTTTKTIQFGNITITDGIVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I V I +LRKK+ +I T+ G GY Sbjct: 178 EDYFEFDNTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKFV 219 >gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] Length = 236 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++L + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERLKDNPDFE--IVTMRGIGYK 232 >gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] Length = 230 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 IL++ED+ + I L L+ FNV GE+ +E+ + ++ D +LD+ L I GFE Sbjct: 4 ILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R V +L+ ++ ++GL GADDYI KPF+ EL+ARI++++RR Sbjct: 64 VCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRRINL 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +G +N +++ +G +I LT EY ++ L + ++++ LN ++ Sbjct: 124 NMKDGDLIHSGPFVLNNLEESLYKKGKKIELTPTEYMILFQLMYNSSKPISRDELLNTIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E E K++DV I ++R+K+ Y+ T+WG+GY+ + + + Sbjct: 184 GEHYEGETKVVDVNIRRIRQKIELNPSDPQYLLTIWGKGYIWKVSVR 230 >gi|17231280|ref|NP_487828.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132922|dbj|BAB75487.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + I L + + + G+ + L + + +ILD L D G+ Sbjct: 10 KILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNLPDTSGYS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + + ++ + V IL+G + DK+R L +GADD+I+KPF+ E+ R++A +R Sbjct: 69 LCQEM-QSRNNVLVMILTGRTEEADKIRILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ L++N + + V + ++LT E+ ++ L+ ++ + + Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++DV I +LRKKL + +I+TV G GY Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231 >gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL J2-064] gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816] gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220] gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott A] Length = 231 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230 >gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + + L +E + V G + ++L K + IILD+ + ++ G E Sbjct: 7 KILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMPEMDGIE 66 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R T + + +V G +GADDYI+KP + LV++++A++RR Sbjct: 67 ACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRRF 126 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G L +N + V + L KE++++ LL+ + T+E L+ Sbjct: 127 KEEGVSSQITKVGKLVINREEYKVYKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDK 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 187 VWGLEVVVGGRTIDVHIRKLREKIGDESF-----KTVKGVGYKFV 226 >gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++ I++ LK + + G + ++ +FD +ILD+ + + GFE Sbjct: 20 RILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYVDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ IL+ +D V G + GADDYI+KPF EL+AR+ AI+RR G Sbjct: 80 ACQRIR-ERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ ++ V V+G ++LT E++++ L+ +E Sbjct: 139 YKHRVAPPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV + +LR+K+ + I TV G GY + E Sbjct: 199 VWGYDYVGETNLVDVCVRRLREKVESEPSRPRLILTVRGVGYKMAE 244 >gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 223 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+ + + K E F V+ + G +G+E+ K + +ILD+ + + G+ Sbjct: 1 MNILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMIPYLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R P+ +L+ S EDK+ G + GADDY++KPF+ + LVA+++A+++RS Sbjct: 61 KVCKNIR-ELSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSI 119 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++I L +N + V++ G I L+ KEY ++ K+ L+++ L+ Sbjct: 120 IDINEEKNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDR 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++ +D I +LR+KL N A +YI TV G+GY N Sbjct: 180 VWGFDYDGGLRTVDTHIKRLREKLKNKA---DYIVTVRGKGYKFEVN 223 >gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKTVRKDSRI-PILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G L +N D+ V G ++LT E+ ++ LL+ N + + Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 130/242 (53%), Gaps = 16/242 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L + + V G + +E + + D I+LD+ + + G + Sbjct: 6 KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGLQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR P+ +L+ + + D+++GL+ GADDY+ KPF+ +EL +RI+AI+RR+ Sbjct: 66 VCQTLR-ESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTVP 124 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ G L + + V + G RI LTG E+ +++LL + T+++ Sbjct: 125 GKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVSR 184 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226 L ++ +++++DV + +LR K+ +++ YI T WG GY +R+ + Sbjct: 185 SDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGYFFQKMRKKSP 244 Query: 227 DE 228 ++ Sbjct: 245 EQ 246 >gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)] Length = 225 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD+A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224 >gi|145225290|ref|YP_001135968.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315445587|ref|YP_004078466.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145217776|gb|ABP47180.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315263890|gb|ADU00632.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V QG +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 239 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + + L + G+ + ++ I+LD+ L ++ G + Sbjct: 4 RILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVMLPNMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + + +L+ +S D+V GL+ GADDY++KPF+ EL AR+R+ +R+ Sbjct: 64 ICRQIRDKRPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVHV 123 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 QS + G L + V + + LT E++++ L+ ++ Sbjct: 124 LQQSHVPSPQESEALCIGTLRIEQKNHQVFLAEQELVLTATEFELLHHLANHPGQVFSRS 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ ++ I +LR KL A ++TVWG GY Sbjct: 184 QLLESVWGYHHSGYEHTVNSHINRLRAKLEKNATSPKIVQTVWGVGYKFNPQG 236 >gi|317056279|ref|YP_004104746.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448548|gb|ADU22112.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 236 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + +I +L+ E + G + +E + I++D+ + + G Sbjct: 8 ILVVDDDRDIVAAIAKLLELEGYKTVRAYDGIEALEKLSENDIQLILIDVMMPRLDGLSA 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R K + P+ +LS S DK+ GL GADDYI+KP+N EL AR+++ +RR Sbjct: 68 IMKIR-DKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVKSSLRRYMQL 126 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G L ++ AK++ V G + LT E +++ELL + E Sbjct: 127 GDIGSINKTDVIKIGGLELDKGAKSITVDGEPVKLTATELKILELLMENAGHVFSAEEIY 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + +N Sbjct: 187 RRVWNEDAYAVENTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235 >gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] Length = 236 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLALPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++L + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERLKDNPDFE--IVTMRGIGYK 232 >gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] Length = 231 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + + V G + ++ + + IILD+ + + G+ Sbjct: 11 KILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPKMDGW 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R+ P+ +L+ S D+++G G D+YISKPF+ + LVAR+ AI R Sbjct: 71 QVCREIRM-HSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQ 129 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G + V+ A TV G + L+ KE++++ + L++E LN+++ Sbjct: 130 GSGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVW 189 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL + YI+T+WG GY Sbjct: 190 NYDYFGDARTIDTHVKKLRSKLGDKG---EYIKTIWGMGYKFE 229 >gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] Length = 234 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 7 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 67 ICQKIR-EKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 125 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 126 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 185 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 186 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 234 >gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 611 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 1/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL EDD+++A ++ L + V V GE L + +D I+LD+ L + G Sbjct: 1 MKVLLAEDDESVAEALREFLVHQRHLVDVAGDGETAWNLIELGNYDLILLDVLLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+G+ + DKV GL +GADDY+ KP + EL ARIRA++RR Sbjct: 61 SLCRRLRSKGHRMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V QG +HLT KEY ++EL ++ ++HL+ Sbjct: 121 AALPPVLEWGPLRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRGGRRVYSRRAIVDHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + PE + + LR KL + IETV+G GY L+ A + E L A Sbjct: 181 FEEPPEEDTVKAHVKGLRHKLRAVGAPADLIETVYGLGYRLKPQAGAD-AEALTVA 235 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD L ++ +L + + + D ++LD+ + + G E Sbjct: 489 KVMIVDDDAPLLAALRALLAPWGLQLLTLADPLQFWRQLESFRPDLLVLDVEMPHLSGIE 548 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + R +R PV LS + E R GADD+++KP Sbjct: 549 LCRIVRGDPQWQWLPVLFLSAHTDEETVERAWAGGADDFVAKPV 592 >gi|324998685|ref|ZP_08119797.1| putative OmpR family two-component response regulator [Pseudonocardia sp. P1] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA + L +E + + G G++ D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEKPLAELVRRGLAAEGHEIELAHDGNTGLQYALSGRHDVIVLDIMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + TPV +L+ D+ GADDY++KPF+ L+AR+RA++RR+ Sbjct: 61 RILQHLRDRGVWTPVLMLTAKDGEYDEADAFDLGADDYLTKPFSFVVLLARLRALLRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +++ GDLS++ V I LT +E+ ++E L +TK L ++D Sbjct: 121 ESAPTVLRVGDLSLDPATHRVHRGDVEISLTPREFGVLEHLMAHPGQVVTKTDILRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + EV +++V++ LR+K+ +A G + IET+ G GY + E A Sbjct: 181 AHYDGEVNVVEVYVGYLRRKI-DAPFGTHSIETLRGVGYRMSEPA 224 >gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 227 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + IE+ML + + + G + ++ D ++LD+ + GF V Sbjct: 4 VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFVV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----R 118 +++R A + P+ L+ + EDKV+GL G DDYI KPF +ELVARI A++R Sbjct: 64 CQSIR-AMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ G + ++ A+ V V G I LT KE++++ L ++E L + Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + +D I LR KL A +I+TVWG GY Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKDAAS--HIQTVWGVGYRFDP 225 >gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 ++L++ED++++ I + LK F+V G + + + D +LD+ + I GF Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + L+ +DKV L GADD++SKPF+ EL+ARI++++RR Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +G +++L +K + G I LT E+ +I+ ++NT L++++ L+ Sbjct: 123 VYRESSAKVTFTSGPFTLDLISKQFKKNGRLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++ + KI+DV I +LR+K+ +++TVWG GY + + Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIETNPSEPAFLQTVWGHGYKWKGEGQ 232 >gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] Length = 235 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+ I L V E+ + + D ++LD L + G E Sbjct: 5 ILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWMLPGMTGIEF 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR P+ +L+ +DKV GL+SGADDYI+KPF+ EL ARI A+ RR+ Sbjct: 65 ARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++ V + L E++++ ++ L+ ++ Sbjct: 125 PQTTEDAVEAGDLRLDPVTHRVGCGDRPVALGPTEFRLLHFFMTHPERVHSRAQLLDKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +LR L +G I+TV G GY Sbjct: 185 GDHVFVEDRTVDVHVRRLRAALEP-SGHDQLIQTVRGSGYRF 225 >gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] Length = 238 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDDK + +E+ LKS+ + V+ G +G+++ + E D I+D+ + + G Sbjct: 7 RILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVMMPRMDGIT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV LS S DK+ GL GADDYI+KPF EL+AR+ + +RR Sbjct: 67 MTAKLR-EKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYHR 125 Query: 122 H----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G L VN + V V + +T E++++ LL Sbjct: 126 FLDRLNSKQTENPKVHRLGGLEVNEETVEVTVDDKTVKVTPIEFKILLLLIQNPGRVFPA 185 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++ R + V I LR+K+ Y++ VWG GY + + Sbjct: 186 EEIYERVWNERA-VNTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEKQ 237 >gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104] gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22] gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322] gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis CH188] gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG] gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis] gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104] gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22] gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis CH188] gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG] gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137] gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017] gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027] gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141] gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244] gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012] gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031] gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043] gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312] gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645] gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302] gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341] gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342] gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346] gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B] gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630] gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A] gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62] gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF] Length = 229 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MEVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 230 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + + I++ L E F V D G ++ K FD ++LD+ L G Sbjct: 3 KLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ D++ GL+ GADDYI KPF+ ELVARI AI+RR Sbjct: 63 LCKEIR-KISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVAA 121 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +L++N D +TVEV+G I LT KE+ ++ ++ ++E L Sbjct: 122 QPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +++ +D I +LR KL+ G K I TVWG GY Sbjct: 182 ENVWGYDFYGDLRTVDTHINRLRDKLNME-GTKQAITTVWGVGYKFE 227 >gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 226 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ A + L + V V G DG+ + +ILD+ L I GF Sbjct: 1 MKILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 VL ALR ++ PV +L+ + +DKVRG GADDY+ KPF EL+AR+RA+ R Sbjct: 61 AVLSALRTSRQI-PVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ DL ++ G RI L+ KE+ ++ LL+ R L++ + ++ Sbjct: 120 PVVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +++V I +LR K+ + I TV G GYVL A Sbjct: 180 DIHFDSDTNVVEVAIRRLRAKI-DDPFDDKLIHTVRGVGYVLERRA 224 >gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5] Length = 232 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDDK + +++ L+S+ + VY G +G+E+ + E I+D+ + + G Sbjct: 5 HILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEEIHLAIVDVMMPRMDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTMKLR-EKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ V G L +N D V V G+ + +T EY+++ LL+ + E Sbjct: 124 FMEKLEPKENVHVIGGLEINEDRVEVLVDGNPVKMTPIEYKILLLLAKNPGRVFSAEEIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ I V + +R+K+ Y++ VWG GY + + + Sbjct: 184 ERVWQ-EKAISTDTIMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEKQS 232 >gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ AL SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K +V G I LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972] gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972] gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972] Length = 239 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I L +N ++ V + ++ LT +E+ ++ + + ++ L Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPSEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 234 >gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum ATCC 6940] gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum ATCC 6940] Length = 231 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F G + + + + D I+LDL L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLMLPGMNGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + RA+R P+ +L+ + D V GL+SGADDYI+KPF +EL+ARIRA +RR+ Sbjct: 64 ICRAIRTESSV-PIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122 Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I GDL +++ TV G I LT E+ ++ ++ + T+E L ++ Sbjct: 123 ASSGELIEVGDLVIDVPEHTVTRAGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 GYRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 223 >gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + FD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 237 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I +L+ E + G + +++ I++D+ + + G Sbjct: 6 ILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGNVVHLIMIDIMMPKMNGLAA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + P+ ILS + DKV GL GADDYISKPFN +E++AR++A +RR Sbjct: 66 VMKIR-ETNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYMRL 124 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I GDL ++ AK + V G +HLT EY+++ELL E Sbjct: 125 GAMNSESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I ++R+K+ Y++ VWG GY + ++ Sbjct: 185 ERVWQEPAYSVENTVMVHIRRIREKIEINPKQPKYLKVVWGIGYKIEKD 233 >gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 235 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 ++IL++EDDK ++ I +L+ E + + G + ++ F EF I+LDL + + G Sbjct: 7 IKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDG 66 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE++R +R K + P+ ++S ++ DK+ + GADDYI KPF+ E V RI+A++RR Sbjct: 67 FEIIRRVR-QKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRY 125 Query: 120 RGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DL V+++A T+ I +T E+++++L L N TK Sbjct: 126 IYFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQ 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + V I +LR K+ + A YI TVWG GY L E Sbjct: 186 IYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKLGE 235 >gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] Length = 229 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V + GE+ + L D I+LD + ++ G EV Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R+ +RR R Sbjct: 68 CRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRRVR 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A D+ +N + V + + L E++++ + ++E L+ ++ Sbjct: 128 PAATGGQLEYEDIVLNAASHRVSRGENELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ GG + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQ-FGGSDPLRTVRGAGYAL 228 >gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e] gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23] gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988] gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S] gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161] gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578] gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923] gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e] gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes] gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23] gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578] gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923] gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 231 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230 >gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V E L + D I+LD L G + Sbjct: 5 ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGITL 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR PV +L+ + DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L ++ V G + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRAQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +N+IETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-GKLENHIETVRGAGYRF 225 >gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 217 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + PV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIRKKDDT-PVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ ++ A+ V V+G +I+LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KPNSNDILF----IDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I LR+KL + ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGYKFE 214 >gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DDK + +IE+ L++E + ++ G + +EL + E II+D+ + + G Sbjct: 1 MNILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R K PV +LS S DK+ GL GADDYI+KPFN EL+ARI++ +RR Sbjct: 61 RATMKIREEKNI-PVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFT 119 Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ TG L+++ ++K + V G IHLT +Y++++LL+ + + Sbjct: 120 ILGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ Y++ VWG GY + + Sbjct: 180 EKVWNETAFSPENTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKVEK 227 >gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 251 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 117/228 (51%), Gaps = 11/228 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA I L+ E F V G D I + + + D +ILDLGL I G EV Sbjct: 18 LVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGLPGIDGLEVC 77 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R + V +L+ + D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 78 RQIRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRVLH 136 Query: 124 Q----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G LS+++ A+ V + G I LT E+ ++E LS L++ Sbjct: 137 TAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSRRQ 196 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + DG ++DV I LR+KL + A YI TV G GY + Sbjct: 197 LIEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGYRM 244 >gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L S++ L+ ++ V + GED + + +D I+LD+ L + GF Sbjct: 1 MRILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLLPRLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR + + P+ +L+ + ++ +V GL +GADDY++KPF EL ARIRA++RR Sbjct: 61 EVCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + D+ ++ I L KEY ++E L L++ M H++D Sbjct: 121 TTKTAALCFLDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +IDV+I LR+KL + I T+ G GY L+E A Sbjct: 181 CETEHLSNVIDVYIRYLRRKLCENH-EPDVIHTIRGAGYQLKEPA 224 >gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] Length = 231 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD+ + + + L++E F + G+ +E + Y D +ILD+ + + G Sbjct: 1 MKILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V+ +R + P+ +LS S+ DK++GL +GADDY++KPFN E++AR+++++RR Sbjct: 61 ISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRT 120 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L +N + V G I LT E+ ++ LL+ N + + Sbjct: 121 SALTKESESAEEITIGPLLINKGSHQVTTLDGLEIQLTVLEFGILFLLASHPNKVFSADE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K++ A GG IETVWG GY + Sbjct: 181 IFETVWQQESIVSTKTVMVHVSHLRDKIAEATGGDKVIETVWGVGYKIE 229 >gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 233 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 7 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 67 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 127 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232 >gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1] gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1] Length = 242 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L E F V GE+ +++ ILD+ + + E+ Sbjct: 16 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDEIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + ++ ++TV + G I+LT EY ++ L++ +N T E Sbjct: 135 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V I +LR K+ +I+ VWG GY + + Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242 >gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + I+ L+ E ++V G++ + + + IILD+ + ++ G EV Sbjct: 8 ILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL-IQSKRQPSLIILDVMMPEMDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ LS S D+++GL +G DDY+ KPF+ EL ARI A +RR + Sbjct: 67 CKQLR-ETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRREQRI 125 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+++ V GH + LT KE+Q++ELL++ + ++E L Sbjct: 126 HTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQIYEKL 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + I I K+R KL+ A +++I+TVWG GY Sbjct: 186 WGLDADGDDSTITEHIKKIRAKLAAHAQNRSFIQTVWGIGYKWDPQ 231 >gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 228 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A +EL LK E + V + G G+E +FD IILD+ L + G E Sbjct: 5 KILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVMLPSLNGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 VLR LR TPV +L+ + DKV GL GADDY++KPF EEL+ARIRA R+ Sbjct: 65 VLRRLR-QVSETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +I GDL +NL+ +V + LT KEY ++ L KN LT++ L ++ Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LR K+ + I TV G GY++++ Sbjct: 184 GYDYYGDTNVVDVYIRYLRSKI-DDRFNTKLIHTVRGVGYIIKDE 227 >gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 245 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+K+++ + + + E ++V G + +++ +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R S P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ RR Sbjct: 61 GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120 Query: 119 SR--------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163 + + I T +N + + + G I LT KE++++ L+ Sbjct: 121 AHTEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++E L ++ + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYKFDD 238 Query: 224 NAKD 227 + D Sbjct: 239 SEVD 242 >gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] Length = 229 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDAPVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-DAGHDKLIQTVRGAGYRF 225 >gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + V G + IE + +LD+ L D G Sbjct: 3 KILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTSGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + V +L+ S +DK+ G QSGADDYI KPF+ +EL+ R++A++RR + Sbjct: 63 EICKYIRKEFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALIRRVK 122 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S + + + + + + LT E+ +++ L + +L+++ L Sbjct: 123 KDSDSKKNNMINTPPFLLDPNKRKLYKNEVEVDLTPTEFSIVKYLMTNDSQSLSRDQILE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ D + KI+DV I ++R K+ + +I+TVWG GY R + Sbjct: 183 EVWGSADLYDYKIVDVNIRRIRNKIEDDPSKPKFIQTVWGYGYSFRRDE 231 >gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A L+ F V V + GE G+ EFD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICREVRSQKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + D+ ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium] gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K LA +E+ LK++ + VY G D + + E D ILD+ L DI GF+ Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ + S ADDYI+KPFN E+VAR++A +R+ Sbjct: 64 ICQKIR-EKFYFPVIMLTAKV-EDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q ++++ + + G I LT E+ ++ L R+ T ++ E Sbjct: 122 YKQPCIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + I +LR+K+ + +I+TVWG GY + + Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 239 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ I L +N ++ V + ++ LT +E+ + + ++ L Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLRLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++++ + E ++ I +LR K+ A I+TVWG+GY + Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRFSVD 234 >gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] Length = 229 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 217 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 12/222 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + V GE+G++L + D ++LD+ + G+ Sbjct: 1 MKILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVMMPKKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV RA++ +TPV +L+ + ED++RGL+ GADDYI KPF+ + L R Sbjct: 61 EVCRAIKSE-KTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILEL------RLKN 113 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ + K V + + L KEY ++ L+ + ++E LN+++D Sbjct: 114 LLGDEIYTIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWD 173 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +D I LRKK+ + YI TV G GY Sbjct: 174 LLCESDPRTVDTHIKNLRKKIGH-----EYITTVKGFGYKFE 210 >gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR Sbjct: 67 CKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E K++DV + +LR+K+ +I TVWG+GYV +E Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKE 229 >gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] Length = 223 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + I L+ E V V G DG+ ++D +ILD L ++ G Sbjct: 1 MKLLVVEDDTTTSTYIARGLREEGHAVDVVADGRDGLVQATTGQYDVLILDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +L+ LR A +TPV +L+ M ++ED++ GL +GADDY+ KPF EL AR+ A R Sbjct: 61 TLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRPQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G+L+++L ++ V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 ALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P +++ I +LR K+ + I+TV G GY + Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DRPFDVELIQTVRGAGYRIE 222 >gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] Length = 230 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + + D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVSGIEV 64 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I GD+ ++ A V+ G IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK L N + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKAL-NGTTDADPIRTVRSAGYSLDMDA 229 >gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + + E +N + GE+ ++L A++LD+ + + G+EV Sbjct: 4 ILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMPKMDGYEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R P+ +++ +K+ GL GADDYI KPF+ E++AR+RA++RR Sbjct: 64 CRKIRAKSNV-PIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVAP 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ I +L +NLD ++ + G +I LT KE + + L+ N T++ L Sbjct: 123 ESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L+ + + +D I +LR KL I+T+WG GY +A Sbjct: 183 DSLWGFDYFGDSRTVDSHIKRLRAKLDTVEHPNWCIKTIWGVGYKFDIDA 232 >gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21] gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K LA I L+ E F V G DG+E D I+LDL L + G EV Sbjct: 4 VLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLMLPGMLGTEV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + + PV +L+ DKV G + GADDY+ KPF+ EL+ R++A++RRS+ Sbjct: 64 CKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLRRSK 123 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + ++++ V V G I+ TG E++++ L+ R ++++ L + Sbjct: 124 TRPAAATAMQVGPIDIDVERHCVLVNGGEINFTGTEFKLLHTLAQRLGRVQSRDVLLRDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I +LR KL A + I+TV G GY L Sbjct: 184 WGYNFVDDSRTVDTHITRLRTKLGEAG---DLIKTVRGFGYKLE 224 >gi|326330532|ref|ZP_08196840.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium Broad-1] gi|325951807|gb|EGD43839.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium Broad-1] Length = 221 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A + L ++ G +G+E FD ++LD+GL I GFE Sbjct: 3 RILIVEDEDRIAAFLAKGLSADGHQTTTVADGLEGLEEALSGAFDLMVLDIGLPTIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV +L+ S+ D V L+ GADDY++KPF EL ARI +R+ Sbjct: 63 VLDQLRAQGSRMPVVVLTARDSVHDTVSALEGGADDYLAKPFRFAELRARINVRLRQQDN 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +G ++++L + + V G L+ +E+ + E+L L++ L+ + Sbjct: 123 TDAEVGELRSGSVALDLRTRRLRVDGRETDLSAREFALAEVLLRHPGQVLSRAQLLDLAW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ LRKKL +A +ETV G GY + Sbjct: 183 GMDFDPGSNVVDVYVGYLRKKLGSA-----RVETVRGMGYRFQP 221 >gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602] gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 228 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 117/226 (51%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + I+ L F + G G +DA+ILDL L + G Sbjct: 1 MRILLIEDDKMIGDGIKAGLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R A TPV IL+ ++E +V GLQ+GADDY+ KPF E+ AR++A++RR Sbjct: 61 QLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G + + A++V + G + LT +E ++EL K L + + LY Sbjct: 121 GVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR KL K +I TV G GY L + K Sbjct: 181 WEDEVSSNAVEVHIHHLRSKLG-----KGFIRTVHGVGYTLGDEIK 221 >gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 230 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ ++ L F V + GE+G++ ++D I+LD+ L GF Sbjct: 4 RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR IST + +LS D+V GL GADDY++KPF+ E+V++I+AI+RR Sbjct: 64 VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + ++ V V G I T KEY+++E L K +++++ L+ Sbjct: 124 LSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ + + +I+DV I K+R+KL + I+T+ G GY+L + D Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKLKDYGIK---IKTIRGIGYMLEDEVHD 230 >gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ALA ++ L++E F+V ++ G++ D IILD L + G E Sbjct: 4 KILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLSGIE 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ D++RGL GADDY+ KPF+ EL+AR++AI R Sbjct: 64 LCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D+ ++ + V G + L E++++E L ++ L+ + Sbjct: 124 APERISQTLEVEDIELDRETYRVMRSGREVRLGPTEFKLLEFLMESPGRVFSRTQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LRK ++ K+ I TV G GY L E Sbjct: 184 WGRDVYVDERTVDVHIGRLRKAINR-GKEKDPIRTVRGAGYALGE 227 >gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] Length = 229 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ + + F E+ + + Y D I+LD L G Sbjct: 4 KILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTSGVV 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR P+ +L+ DKV GL+SGADDYI+KPF+ EL+ARIRA++RR Sbjct: 64 LAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRRH 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + +G L ++ + V +G I L E++++ ++ L+ + Sbjct: 124 IPTLSEDKVASGGLELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + E + +DV I +LR L A+G I+TV G GY N+ Sbjct: 184 WGTQVFVEERTVDVHIRRLRASLE-ASGLDGLIQTVRGSGYRFSTNS 229 >gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 227 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A IEL L++E + V G G+ + + +++DL L + G EV Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDGLEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR Sbjct: 69 ARRIR-KTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVTPA 127 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I DL +NL+ + V G RI + KE++++ELL+ ++ ++ G Sbjct: 128 ITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVWPG- 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LRKKL AG + I TV G GYVLRE+ Sbjct: 187 YQGGSNVVDVYIGYLRKKLE-GAGERRLIHTVRGVGYVLRED 227 >gi|226311027|ref|YP_002770921.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093975|dbj|BAH42417.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+++D++ + ++ +L E VY +G + D +ILD+ L D G+ Sbjct: 3 KVLIVDDEEDIVRLLKTVLIKEGIENVYTASTAAEGFGQFQDKHPDVVILDIMLPDGEGY 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R + P+ LS + DK+ GL G DDYI KPF+ +E+ R++A +RR+ Sbjct: 63 DVCKKIR-SISHVPILFLSAKTEEVDKLVGLAIGGDDYIGKPFSPKEVAYRVKAQLRRAE 121 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I G + + + G I L KE + L N ++KE Sbjct: 122 YQQVQVKADPIIQVGPFVFDEEKVELRKHGTIIELKPKELGLFTHLLKHPNQIISKEKLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + V I KLR+K+ + Y+ TV G GY L KDE Sbjct: 182 YQVWGEDFFGFDNTVMVHIRKLREKIEDDPSNPTYLLTVKGLGYKLV--VKDE 232 >gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 240 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 9/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + ++ L F+V G + + + IILD+ + GF + Sbjct: 7 ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIMMPGDDGFSL 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K P+ +L+ S D+V GL+ GADDYI+KPF+ EL+ARI+A++RR+ Sbjct: 67 CQQIR-RKSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRAEFR 125 Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G G I LTG ++ ++ L L ++ Sbjct: 126 QPEKEVVSGRKLKFAGWTLDTRTQLLTHEDGSGIDLTGSDFILLHLFLQHPGQVLDRDTI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + P + IDV I +LR+KL + G I+T+ G GY+L + E Sbjct: 186 SDATRGRESLPMERGIDVQISRLRQKLGDNGKGPRIIKTIRGSGYMLIAEVEHE 239 >gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 3/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED+ L I L + V G G+E+ ++FD IILD+ L+ + G Sbjct: 1 MKILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R + PV +L+ +SS E+ + GL SGADDY+ KPF EL ARIR++VRRS+ Sbjct: 61 QVCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRSK 120 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V+ AKTV G I+LT EY+++E +N L++ L ++ Sbjct: 121 VVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATEYRLLEYFIQNQNVVLSRIQILENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D ++DV+I LRKK+ + I TV+G GY+ + A +E Sbjct: 181 WDIDFNMGTNVVDVYINYLRKKI-DNGYQTKLIHTVFGMGYIFKSQAPNE 229 >gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] Length = 229 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I++G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANTIISGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|291447797|ref|ZP_06587187.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291350744|gb|EFE77648.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ +D +ILD+ L + G+ Sbjct: 3 MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIMLPGMNGY 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 63 RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 122 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L ++ A+ V I LT KE+ ++E L+LR ++K L H++ Sbjct: 123 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + I++V+I LR+KL A I TV G GY L Sbjct: 183 DFAYDGDPNIVEVYISTLRRKLGAAT-----IRTVRGAGYRLE 220 >gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis HTCC2503] gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis HTCC2503] Length = 225 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A + L+ V G+ G + + +DA ++D L I G Sbjct: 1 MKILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +L R A TP LS + ++D+V GL++G DDY+ KP+ EL+AR+ A RR Sbjct: 61 TMLEMRRSAGDQTPALFLSALGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q+ GDL +++ +TV G ++ L +E++++E L + +T+ M L +++ Sbjct: 121 PTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLEYLIRHSDQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +P+ +IDV I +LR K+ ++TV G GY L + Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDRDFDKP-LLKTVRGAGYTLTDE 224 >gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L E + V G +G++ K + IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGI 65 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R +T + L+ +V G +GADDYI+KP + L+++++A++RR Sbjct: 66 EACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +++ G+L++N + + + G I L KE++++ LL+ + +E L Sbjct: 126 LKAEEGNATIVKVGNLTINKEEYKIILDGKEILLPKKEFELLSLLASKPGKVFKRENILE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + IDV I K+R K+ + I+T+ G GY E Sbjct: 186 RIWGNEVVVGGRTIDVHIRKIRDKIGD-----KSIKTIKGVGYKFIE 227 >gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 +++L+++D+ + ++ L E + V G + +++ + E +ILD+ + + G Sbjct: 4 IKVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++V R +R P+ +L+ S D+++G + G D+YISKPF+ + LVAR+ AI R Sbjct: 64 WQVCREIR-ETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRT 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +I GD+ ++ A V++ I L+ KE++++ + L++E LN++ Sbjct: 123 LGNTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + ID + KLR KL + YI+T+WG GY N Sbjct: 183 WNYDYFGDARTIDTHVKKLRSKLGDRG---EYIKTIWGMGYKFEVN 225 >gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 236 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + +E L E ++V G+ I++ K + D I+LD+ + + G E Sbjct: 12 KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R LR +T + L+ S +V + GADDYI+KP L++RI A+ RR Sbjct: 72 TGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRRE 131 Query: 120 RGHAQSLIVTG--DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+S DLS+N TV G + L KE++++ L+ N +++ L Sbjct: 132 AQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDELLQ 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +DV I KLR+KL + YI+T+ G GY+ Sbjct: 192 KIWGADIYVLERTVDVHIRKLREKLGD-----TYIKTLKGVGYMF 231 >gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + +E+ LK+E ++V+ GE+ +++ + E ++LD+ + D+ GFEV Sbjct: 5 ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + + P+ +LS DK++G+ +GADDY+ KPFN EL RIRA+ RR+ Sbjct: 65 CSKVR-ERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + V+ D + ++ + + + + LT +E++++ LL+ + + E Sbjct: 124 NTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V + +LR KL G I TVWG GY + + Sbjct: 184 KVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIEK 230 >gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M IL+IED++ LA I L+ E + G G+E + D I+LDL L + G Sbjct: 1 MHTILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLMLPGMAG 60 Query: 60 FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 E+ + L+ + PV +L+ D+V G + GADDYI KPF+ EL+ R++A++R Sbjct: 61 TEICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLR 120 Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + + G +S++ + V V I LT EY+++ L+ R ++++ L Sbjct: 121 RTLPEQPRKKVFSVGPVSIDTERHLVTVADKEILLTTIEYKLLLDLAERAGRVQSRDILL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + + +D + +LR KL +A + I+TV G GY + E Sbjct: 181 QNVWGYNYVGDSRTVDTHVTRLRTKLGSAG---DMIKTVRGFGYKIEEE 226 >gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K LA +E+ LK++ + VY G+D ++ + E D ILD+ L D+ GF+ Sbjct: 4 KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K PV +L+ + S ADDYI+KPFN ELVAR++A +R+ Sbjct: 64 ICQKIR-EKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLELVARVKAQLRQYMR 121 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q ++++ + + G I LT E+ ++ L R+ T ++ E Sbjct: 122 YKQPGIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + I +LR+K+ + +I+TVWG GY + + Sbjct: 182 ELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 238 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A I L+ F+V G++G+E FD +++DL L ++ GF Sbjct: 6 RLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPELDGFT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R P+ I+S S E KV+G GADDYI+KPF+ EEL ARI + +RR R Sbjct: 66 LLRTIR-KTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + LS++ K V + G ++LT KEY+++ LL+ T +KE L Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ D + V I LR KL + + +I+TVWG GY KDE Sbjct: 185 EMIWKQEDISASNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRFIGEDKDE 237 >gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 238 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL ED++AL + L++ F V G + + L + +ILD+ + + G E Sbjct: 7 RILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ IL+ + S DKV L GADDY++KPF EEL+AR+RA +RR+ Sbjct: 67 VCQRVR-QSSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTNW 125 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G+L V+L V ++G I L+ E+ +++ L LT M Sbjct: 126 EETGSLPAVSNAKHFGELEVDLAGHVVRLRGEEIRLSPTEFALLKQLVTNAGKVLTHRML 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ E + + V+I +LR KL + Y+ T G GY Sbjct: 186 LQSIWGPEYGDEAEYLRVYINRLRHKLETDSANPRYLLTEPGVGYRFVAP 235 >gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 224 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ L ++ +L+ +NV + G +EL D II D+ + ++ G+ + Sbjct: 4 ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHVDLIICDIMMPNMDGYAL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR A + PV +++ + +DK +G G DDY+ KP + +E+V R+ A++RRSR Sbjct: 64 TDTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRRSRII 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G++ +N D TV + L KE+ ++ L T++ ++ ++ Sbjct: 124 NERRLSIGEVELNYDTLTVHRNNNSYILPKKEFYLLFKLLSYPKQIFTRQQLMDEIWGMD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + + +DV I +LR+K ++ + I TV G GY Sbjct: 184 AEADERTVDVHIKRLREKFADFPEFE--IVTVRGLGYK 219 >gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL + D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1] gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92] gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92] gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] Length = 235 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ ED+ + + + +L E + + G + L + + D IILD+ + ++ + Sbjct: 1 MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDSY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R TP+ LS D+V GL+ GADDYISKPF E+ ARI+ IVRR Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 GDL V + R+ L+ +E ++ L K +T++M Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++ P+ + +D I KLRK + I TV G GY Sbjct: 181 DAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 >gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 238 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED+ L + L++ + G + + I+LDL L G V Sbjct: 10 IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVAAVHQQPPALILLDLMLPGSDGLSV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 70 CRELR-RFTELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A+S L ++ QG + LT E+++++ L+ + ++E LN+LYD Sbjct: 129 AESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDDY 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ID I LR+KL G K +I +V+G GY A Sbjct: 189 RVVTDRTIDSHIKNLRRKLEALDGEKAFIRSVYGVGYRWEAEA 231 >gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + + ++ V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ G I TVWG GY + + Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|326334181|ref|ZP_08200404.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] gi|325947972|gb|EGD40089.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] Length = 235 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD +L+ + ++L+ E F+ + G+ + Y+ D ++LDL L + G E Sbjct: 14 KVLVVDDDASLSEMLAIVLRQEGFDSQLVARGDLALPAFHSYKPDVVLLDLMLPGMDGIE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ D V GL+SGADDY+ KPF +EL+ARIRA VRR Sbjct: 74 VCKQIRKESGV-PIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELIARIRARVRRHGE 132 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL++++ V G +I LT E+ ++E L+ + + ++E+ L ++ Sbjct: 133 SLPEILEIGDLTIDVAGHQVTRGGEQIQLTPLEFDLLECLARKPHQVFSREVLLEQVWGY 192 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + TV G GY Sbjct: 193 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 231 >gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD +A ++ L + V G G+ + I+LDLGL D+ G E Sbjct: 15 RILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGLPDLDGSE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R + P+ +L+ ++E KV+ L GADDY++KPF+ EL+ARI+ +RR G Sbjct: 75 IARRAK-QHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRRGEG 133 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL + ++ + V G + L+ KE+ ++ELLS R +++ H++ Sbjct: 134 GEVRRV--GDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGK 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E ++DV + LR KL A Y+ TV G GY LR+ A Sbjct: 192 PLETESNVVDVHVANLRAKLREAGAY-GYLRTVRGVGYALRKPA 234 >gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD ++ +EL L+ + V+ GEDG+ + D ++LDL L I GFE Sbjct: 4 VLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLMLPGIDGFET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A P+ +L+ S D V GL++GADDY+ KP L ARIRA++RR+ Sbjct: 64 CRRIR-ALGQVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRRTAAE 122 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GDL ++ V G ++ LT E +++ +S ++ L ++ Sbjct: 123 PGAAGPEQHGDLVIDRAGMLVHKHGEQVPLTPTELKLLLEISRTPGQVHSRSQLLASVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + ++++TV G GY Sbjct: 183 HDYLGDSRLVDACVQRLRAKIEDVPARPDHVQTVRGFGYRF 223 >gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + +LD+ L I GF+V Sbjct: 7 ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL+ARI++++RR Sbjct: 67 CKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRRIEVH 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E K++DV + +LR+K+ +I TVWG+GYV +E Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKE 229 >gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + G G+E EFD ILDL L GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKIR-EVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 122 HAQSLIVTGDLS------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + ++ ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 224 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TP+ +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 217 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 133/222 (59%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R K TPV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I+ ++ A+ V V+G +I+LT KEY+++ L R+N L++E+ LN ++ Sbjct: 120 KPSSNDILF----IDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I LR+KL + ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGYKFE 214 >gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI] gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 226 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905] gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905] Length = 220 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I+ L ++N+ + V G +GI+ FD I+LD+ + ++ GFEV Sbjct: 5 ILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + LR P+ L+ + +D+++G G DDYI+KPF+ L+ R++A+ R + Sbjct: 65 AKMLRNQSNI-PIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + +L+V+ D V I LT KE+++++LL + LT+E+ + ++ Sbjct: 124 NWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ID I LRKKL YI+TV G GY + E Sbjct: 184 DYSGETRMIDTHIKNLRKKL-----NLPYIKTVKGIGYKIDE 220 >gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 234 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K + IE+ LK++ +NVY G +G+E+ + I+D+ + + G + Sbjct: 6 VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +L+ S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKLR-ENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G L +N D K V + G I +T E+++++LL + E Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYEKVWNEEA-INTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234 >gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] Length = 228 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ + +++ L+ E + V+V G +G+ + + + D +ILDL L D+ G Sbjct: 1 MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDLVILDLMLPDMKGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + +L+ S+E ++ GL GADDY+ KPF+ ELVARI+ +VRR Sbjct: 61 EICQQIRAISDVY-LFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRIN 119 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +L G L ++ + V+VQ + T E+ ++ LL K LT+E +N + Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 180 LGFDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222 >gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 228 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +L++ED+ +++ ++ L E++ V G +E+ + + D ++LD + + G Sbjct: 4 HVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR ++ + +TP+ L+ I DKV GL +GADDYI+KPF EEL+AR+R I R+ Sbjct: 64 LTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L V+L A T EV G ++LT +E+ ++ + +++ L+ ++ Sbjct: 124 STSCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +D ++ LR K+ + K+ IETV G GY L + Sbjct: 184 GMDFDGQENTVDAYVRYLRAKI-DLPNHKSLIETVRGVGYRLNDEG 228 >gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++A I++ LK + + G + ++ +FD +ILD+ + + GFE Sbjct: 20 RILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYVDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ IL+ +D V G + GADDYI+KPF EL+AR+ AI+RR G Sbjct: 80 ACQRIR-ERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ ++ V V+G ++LT E++++ L+ +E Sbjct: 139 YKHRVAPPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV + +LR+K+ I TV G GY + E Sbjct: 199 VWGYDYVGETNLVDVCVRRLREKVEAEPSRPRMILTVRGVGYKMAE 244 >gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 231 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDKA+ ++E+ LK E +NV G+ ++ + + +++D+ + ++ G Sbjct: 6 ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPELDGLSA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 66 TVKIREELNI-PIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRRYTQL 124 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L ++ +AK + V G + LT EY ++ L + + + Sbjct: 125 GGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 185 VWKEPAYSSENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230 >gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 227 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + D ++LDL L + G +V Sbjct: 4 VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLRARSSV-PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G + ++++ V V G I L KE+ ++E L LT+ ++ + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVCGLGYKLE 226 >gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae] gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989] gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae] gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989] gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ L E + + + G DG+ ++D IILD+ L + G++ Sbjct: 5 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 65 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 125 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV + +LR K+ + I TV G GYVL Sbjct: 185 NFDSDTNVIDVAVRRLRSKIDDDF-EPKLIHTVRGAGYVLE 224 >gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158] gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158] Length = 225 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ + F V + G G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ + D+V GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 SVLKRLR-DTHTTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V I +LR K+ + A I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKV-DDAFPLKLIHTVRGVGYVLE 220 >gi|256376067|ref|YP_003099727.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920370|gb|ACU35881.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 241 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+ + ++ L L E F V GE+ + L FD ++LDL L + G EV Sbjct: 20 VLLVEDDEHIRQALGLALGDEGFGVTDAVSGEEALRLLDRRVFDVVLLDLSLPGVDGLEV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ I++ + D + GL++GADDY++KP EL ARIRA++RR G Sbjct: 80 CRVLRARGDL-PIIIVTARADTADVIAGLEAGADDYVTKPLVAGELAARIRALLRRRGGG 138 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + GDL V V G +HLT E++++ L+ +T+E L ++ Sbjct: 139 GEEALRFGDLEVRAGEGVVLRAGDEVHLTRTEFRLLVELASAAGRVVTREQLLQRVWGYD 198 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++DV I +LR+K+ + TV G GY L + Sbjct: 199 YFGDTRLLDVHIRRLRRKVEQNPDDPALVLTVRGAGYRLDPD 240 >gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] Length = 231 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K +A + L++E F V V + G G E+ Y +D +ILDL L + G Sbjct: 1 MRLLLVEDEKKVAEFVARGLRAERFAVDVCNDGLSGYEMASTYNYDLMILDLMLPTLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR PV +L+ + +K+ ++GADDY++KPF EL+ R++A++RR Sbjct: 61 EILKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S++ GDL ++ + V G +I LT KEY ++E L+ L++ M + H++D Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGY 219 E I+DV++ LR K+ +G I TV G GY Sbjct: 181 ESFEGLTNIVDVYVRHLRSKV--DSGYPCKLIRTVRGVGY 218 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA ++ L ++V D GED + ++LD+ L + G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR K PV IL+ +++D+V GL GADDY++KPF+ E AR+RA++RR + Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G L +L+A + + L+ +E + E+L R+ +TKE ++ L+ Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 D+ I+V++ + RKKL I TV G GY+L ++ + E E Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNIN---IRTVRGMGYLLEKSGEAERQE 228 >gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDD + + +++ + +NV G +G+ + +F I+LDL L + G Sbjct: 4 INILVIEDDNDINKMLSKLIEKKGYNVKQAYSGTEGMLYIESLDFQLILLDLMLPGMTGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ +R P+ ++S E K+ + GADDY++KPF+ +EL ARI A +RR Sbjct: 64 ELIKKIR-KTKKLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYI 122 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S D+ N +AK V V G + LT +E+ ++ELL +K Sbjct: 123 DFNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++V I LR KL+ A+ + YIETVWG GY L+ Sbjct: 183 ESVWGDEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKLK 229 >gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + ++ +L+ E F+V + + G D + D ++LDL L + G E Sbjct: 3 RVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ ++S + DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLR-QTSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVA 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + +++D V V G L KE++++E LT+ ++ + Sbjct: 122 EDDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + K +DV + +LR K+ + TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEVDPANPVTLTTVRGLGYKF 224 >gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 231 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD+ + +I++ L E F V G + +EL K +E + +I+D+ + + G Sbjct: 3 KILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDGIR 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 63 TTLKVR-ETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G L +N + K V V G I LT EY ++ LL + + Sbjct: 122 LGNMNTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 182 YEEIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231 >gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 235 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IE+ LK++ + V+ G D ++ + D ILD+ L DI GF + Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDIDGFRI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 65 CQKIR-EQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVRY 123 Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + L +N + + G + LT E+ ++ L + ++ Sbjct: 124 NNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVISS 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + + I +LR+KL+ A +I+TVWG GY + + Sbjct: 184 EELFENIWGEKFLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235 >gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 237 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ ++ +E L F V GE+ +++ + E D IILD+ + + G++ Sbjct: 7 KILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVMMPKLNGYQ 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++LR P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +RIR I+RR Sbjct: 67 VCQSLRQE-SDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITK 125 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S G L ++ + + V RI LT E+ ++ELL R +++ FL Sbjct: 126 SHSSHHKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFL 185 Query: 176 NHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +++DV + +LR KL + I +V G GY ++ Sbjct: 186 QKVWGYSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAIQ 234 >gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 248 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +E + D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I DL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QVAGIPNSGVIQVADLRIDTNKRQVFRADERIRLTGMEFSLLELLVGRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 DVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ +S +DKV G +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 63 VCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFNDTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++ I V I LR KL YI+TV+G GY L Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] Length = 235 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 3/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA + + L++E F D G + + D I+LDL L + G Sbjct: 6 RILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ +L+ D++ GL+ GADDY+ KP+N E+VAR++A +RR+ Sbjct: 66 VCRQLR-AFCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ G + LT E++++ L+ + L++ L+HL+D Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHDD 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK--DETC 230 + ID + LR+KL AA G++ I +V+G GY E DE Sbjct: 185 GRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWEEPPPGTDERP 235 >gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 227 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L+ + V GE+G L +DA++LD+GL G Sbjct: 1 MRLLVVEDDKDLNRQIVQALEQSGYAVDRAFDGEEGQYLGDNEPYDAVVLDIGLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +KV+G +GADDY++KPF+ EE++ARIRA++RR Sbjct: 61 TVLEEWRAAGRDMPVLILTARDRWSEKVQGFDAGADDYVAKPFHMEEVLARIRALLRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + +V G + ++ + V V G + LT EY+++ L +++ + HLYD Sbjct: 121 GHATNELVCGAVRLDTKSGRVVVDGAPVKLTSHEYRLLAYLMHHSGRVVSRGEIIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++VF+ +LRKKL I+TV G GY+ Sbjct: 181 QDFDRDSNTVEVFVGRLRKKLGVD-----LIQTVRGLGYM 215 >gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] Length = 235 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +E+ LKS+ + V+ G +G+E+ + E I+D+ + + G Sbjct: 5 HVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIMMPRMDGIR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTMKLR-EKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRM 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q++ V G L +N V V G + LT EY+++ LL + E Sbjct: 124 FAEKLRDREENQNIHVIGGLELNEATVEVSVDGEPVRLTPIEYKILLLLMKSPGRVFSAE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I V I +R+K+ + Y++ VWG GY + + A Sbjct: 184 EIYERVWN-EKAINTDTIMVHIRNIREKIESCPKEPKYLKVVWGVGYKIEKQA 235 >gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016] gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016] Length = 243 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 10 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 70 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 129 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 130 ELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDKL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 190 MNMARGREYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVFVPDGK 241 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + + + LK + + V G +++ + ++ D ++LD+ + + GF Sbjct: 9 KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR I P LS S+EDKV GL G DDY++KPF+ EE+VAR+ ++RRS Sbjct: 69 LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + IV DL ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +V +++ ++ LR+K+ G K I T+ G GYV+RE + Sbjct: 189 VWSYDFGGDVNVVESYVSYLRRKV--DTGPKRLIHTLRGVGYVMREPRE 235 >gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 224 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + + I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKITRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ ++ I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221 >gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 248 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G + + ++ DA++LD+ L D+ GF Sbjct: 23 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFA 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV L+ ++ED+V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 83 VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 142 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDLS++ D+ V G I+LT E++++ L L+K L+ Sbjct: 143 AIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ AG I T+ G GYVL+ Sbjct: 203 VWNYDFGGQANVVELYISYLRKKI--DAGRAPMIHTLRGAGYVLKP 246 >gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANTITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241] gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 110/227 (48%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD L + L+ F V G + + I+LD+ L D GFE Sbjct: 6 RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDGFE 65 Query: 62 VLRALRVAKI-----STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI- 115 V+R LR PV L+ + ED++ GL++G DDY++KPFN EELV RIRAI Sbjct: 66 VVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R S +V G L ++ D+ V G + L+ E+ ++ +L L+K L Sbjct: 126 RRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I+ +I LR+K+ I TV G GYVLR Sbjct: 186 ELVWQYDFGGDDSIVASYISYLRRKVDLD--EPKLIHTVRGTGYVLR 230 >gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L E V + G G+EL FD I+LD+ L D+ GF Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR + P+ +++ I D++RGL+ GADDY++KPF EEL+AR+ AI RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I GDL + T+ G + LT KE ++ LL T +++ Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ D+P I++V++ +LR+KL A G +E V G GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKL--HALGPPVVENVRGFGYRL 225 >gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G++ ++L K Y+ D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKD-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129 Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QLPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237 >gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] Length = 285 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F + G G+ +DA+ILDL L I G Sbjct: 67 MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 126 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 127 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 186 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ + G ++++ + T + G + L KE+ ++ELL L + + LY+ Sbjct: 187 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 246 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V I LR+KL +A +I TV G GY L + Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTLGD 284 >gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD L + L+ E F+V GE ++ FDAIILD+ L + GFEV Sbjct: 5 ILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 123 AQSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + + + LT E+ ++E+L +KE + Sbjct: 124 PTQRPIIEHQGILVDCSKRLATHNNEPMDLTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNQAGEPLVKTVRGFGYMF 224 >gi|116329782|ref|YP_799501.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332664|ref|YP_802381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|294653520|ref|NP_714877.2| two-component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|116122675|gb|ABJ80568.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127531|gb|ABJ77623.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|293630770|gb|AAN51892.2| response regulator [Leptospira interrogans serovar Lai str. 56601] Length = 241 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD + + I L S +++ + GE+G++ K D +ILDL L DI G Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +TP+ I++ + D++ GL+ GADDYI+KPF+ EL R+ RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 RGHAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A G ++ + V ++ + ++++ KE+ +++L++ ++ Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 EM L ++ + ++ID + ++R KL + +IET+WG GY +N Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >gi|320664822|gb|EFX31957.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. LSU-61] Length = 227 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + +LR K+ + I+T+ G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKI-DNDFEPKLIQTLRGVGYMLE 222 >gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 5/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+K LAH + +L+ E+ V + G G+EL + +DA++LD+ L ++ GF Sbjct: 1 MHILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRR 118 E+ R +R + +PV +L+ S+ED+V GL GADDY+ KPF EEL+AR+ A R Sbjct: 61 EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + DL ++L I LT KE+ ++E L LT+ + + Sbjct: 121 RTFEVATQLRADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDAV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDET 229 + E ++D++I LR K+ I+TV G GY L K++ Sbjct: 181 WRYDLEALSNVVDIYIHYLRDKIDQGFTRP-LIKTVRGIGYKLEAYPPRKEQA 232 >gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 231 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E F V G + ++L + + D +I+D+ + + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENNQVDLMIVDVMMPGLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 64 TLKVR-ETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122 Query: 123 AQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G L++N D K V V G I LT EY ++ LL + + Sbjct: 123 GNMNQQTAGQVYKCGGLAINDDNKEVTVDGELIKLTPIEYNILLLLVKNAGKVFSIDEIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231 >gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 225 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 86/223 (38%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA ++ +LK N+ V GE G++ +D IILD+ L + G Sbjct: 1 MRILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIMLPKMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +L+ +R +I+TPV +L+ I DKV GL SGADDY+ KPF EEL+ARIRA R+ Sbjct: 61 SILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRKG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + GD+ ++ + + LT KE +++E L LRKN +KE+ + L+ Sbjct: 121 DILPDSSLKYGDIELDALNLKLSKDSKDVKLTLKESELLEFLMLRKNIVTSKELIIEKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++V+I LRKKL + K I TV G GY+L Sbjct: 181 GFDSEVEPNNVEVYISFLRKKL-SFLNSKVSIVTVRGVGYILE 222 >gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 221 >gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 227 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL++D+ + + L +E + V D G + +++ K IILD+ + + G Sbjct: 6 IRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVMMPGMDGI 65 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ ++ G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R +++ G++ +N D V + L KE++++ LL+ + +E L+ Sbjct: 126 FRDEETGSNIVKVGEIVINRDEYKVVKNKEEMILPRKEFELLSLLASKPGKVFKREDILD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 186 KVWGNEVVVGGRTIDVHIRKLREKIGDDSF-----KTVKGVGYKFV 226 >gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp. SIP3-4] gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp. MP688] gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. SIP3-4] gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. MP688] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ + L L N E L + D IILD L + G E Sbjct: 5 ILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWMLPGMSGIEF 64 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + + P+ +L+ DKV+GL+ GADDY++KPF+ EL ARI+A+ RR+ Sbjct: 65 ARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G L ++ V G + L E++++ L ++ L+ ++ Sbjct: 125 PQMTDDPIEVGGLRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R E + +DV I +LR L +G ++ I+TV G GY Sbjct: 185 GDRVFVEDRTVDVHIRRLRLAL-ADSGHEDLIQTVRGVGYRF 225 >gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 227 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E ++ I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S DL ++ + V+ H + LT +E+ ++ L +N L +E + ++ Sbjct: 124 IKEEENSSYQIADLYLDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LR+K+ I TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRRKIDCNVDVP-LIHTVRGVGYVLK 226 >gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + +E+ L++E +NV+ GE+ +++ + E I+LD+ + + G EV Sbjct: 4 ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + P+ +LS S DK++G+ +GADDY+ KPFN+ EL+ R++A++RRS Sbjct: 64 CRRVR-EKYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYFL 122 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ V + + LT +E++++ LL+ + + E Sbjct: 123 NLKMQVSEDLIRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ + G I T+WG GY + + Sbjct: 183 KVWKERYYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGYKIEK 229 >gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673] gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673] Length = 231 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E F V G + +EL + + + +I+D+ + + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSVNLMIIDVMMPGLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 64 TLKVR-ETSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122 Query: 123 AQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G N + K V V G I LT EY ++ LL + + Sbjct: 123 GNMNTQAGGHIFKCGGLLINDENKEVTVDGELIKLTPIEYNILLLLVRNAGKVFSIDQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EEIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231 >gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A +EL L++EN+N+Y + ++ ++D ILD+ + + GF++ Sbjct: 5 ILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVMMPVMDGFKL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K + PV +L+ DK+ GL GADDYI+KPF+ E+VAR++A +RR + Sbjct: 65 CQKIR-EKYNFPVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLRRFTRY 123 Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + D+ +N + + LT E+ ++ +L + ++ E Sbjct: 124 NEGIQQSNDILEVSSLIMNKTTHECSLNEQPLILTPTEFSILWILCENRGQVISSERLFQ 183 Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I LR+K+ G +I+TVWG GY + + Sbjct: 184 EVWGEKYFSGSNNTVMVHIRHLREKMKEPEGNPKFIKTVWGVGYKIEK 231 >gi|256396695|ref|YP_003118259.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362921|gb|ACU76418.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL+ + + L+ E F G+ +++ + ++ D ++LDL L G + Sbjct: 7 RVLIVDDDIALSEMLGIALRGEGFETTSVADGDRALQVFRDFKPDLVLLDLMLPGRDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRLIRGESGV-PIIMLTAKSDTVDVVVGLESGADDYVIKPFKVKELVARVRARLRRADE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDLS+++ +V+ +G +I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PKPETLAIGDLSIDVAGHSVKREGRQIPLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKIEVDPENPEIVVTVRGVGYK 224 >gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603] gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 6 MRLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K +V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTKQTICYKGIELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+A+A + L LK + V G + ++ + I+LD+ L G Sbjct: 5 KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIG 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 VL LR + PV ILS DKV L+ GADDYI+KPF EL+AR+ A+ R Sbjct: 65 VLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRRVGT 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L G + V L+ ++V QG I LT E++++ L + ++E L ++ Sbjct: 125 QEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELLRQVWK 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ +D F+ +LR KL + + TV G GY Sbjct: 185 -QSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRF 224 >gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] Length = 233 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 111/229 (48%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD + + L+L+ F V G ++L D ++LD+ + G E Sbjct: 3 HILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ LS + DKV GL +G DDY+ KPF+ ELVARI A +RR Sbjct: 63 VCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVNR 122 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L V+LD V V G + LT +E++++ LL+ R + E Sbjct: 123 FAPAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLEE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D D K I I LR KL AAGG +ETVWG GY LR Sbjct: 183 LHQGAWDNHDPVADKTIMAHISNLRHKLG-AAGGAGLVETVWGFGYRLR 230 >gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99] gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99] Length = 241 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQSK 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G+ ++NL + + I LT E+ ++++L L+++ Sbjct: 127 DVPGAPTQQEEEVTFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPATPRYIQTVWGLGYVFVPDG 237 >gi|120402752|ref|YP_952581.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955570|gb|ABM12575.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V QG +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADIDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 239 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ ++ G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWEAE 234 >gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 249 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 4/229 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ + V V G+ E + D +ILDL L + G +V Sbjct: 20 ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RR Sbjct: 80 CRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 139 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L +TV + + L+ EY ++ +L+ L+++ L L Sbjct: 140 EPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQRL 199 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV I KLR+K + AG I+TVWG+GY+ + + Sbjct: 200 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRSEWE 248 >gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + E F V G +G+ FDA++LD L + G Sbjct: 4 RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLDGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 +++++R A ++TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL+AR+ A+ R Sbjct: 64 LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L + V G I LT +E+Q++E RKN +T+ M L ++D Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P I+DV I KLR+++ A I TV G GY++ + Sbjct: 184 YHFDPNTNIVDVHISKLRRQIDEGAEVP-LITTVRGAGYMISD 225 >gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 234 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 146/219 (66%), Positives = 179/219 (81%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD+ ++ +IE MLK+E V T LGEDG+E+ K Y++D I+LDL L D+ G+EVLR Sbjct: 2 VEDDQLMSRAIEAMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGYEVLRR 61 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR A+I TPV ILSG+S + K++GL SGADDY++KPF+K ELVARI+AIVRRS+GHAQS Sbjct: 62 LRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGHAQS 121 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 +I TG LSVNLDA+TV V G +HLT KEY ++ELLSLRK TLTKE FLNHLY G DEP Sbjct: 122 VIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGIDEP 181 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ Sbjct: 182 ELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRDP 220 >gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781] gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763] gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299] gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus A6224] gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948] gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117] gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765] gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102] gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus 132] gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754] gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819] gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus MR1] gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796] gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus] gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122] gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781] gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763] gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299] gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus A6224] gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948] gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20] gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102] gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765] gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117] gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981] gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754] gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819] gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796] gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus JKD6159] gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46] gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131] gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172] gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189] gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193] Length = 219 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L EN+NV G+DG++ + +D IILDL L I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRKIRQQQST-PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++++ +A V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 123 DIIDVNG--ITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPYDRD-KMIETVRGVGYVIR 219 >gi|296536465|ref|ZP_06898560.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] gi|296263209|gb|EFH09739.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A + +MLK+ GE+ +EL Y++D IILD+ L D+ G+ Sbjct: 11 MRVLLVEDDLTTARGVAMMLKASAMIADTAGTGEEALELAGLYDYDIIILDIMLPDMEGY 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR ++ TPV ILSG+S + KV+ GADD+I+KPF+++EL+ARI+AI+RR++ Sbjct: 71 EVVRRLRGNRVETPVLILSGLSRPQAKVKAFGMGADDFITKPFDQQELMARIQAIIRRAK 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +Q + G L++NL ++ V V +HLTGKEY ++ELL LRK LTKE+FLNHLY Sbjct: 131 GFSQPTLSVGPLTLNLGSRDVRVNDREVHLTGKEYAILELLVLRKGLVLTKEVFLNHLYG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G DEPE KIIDVFICKLRKKL+ A G I TVWGRGYVLR+ Sbjct: 191 GIDEPEAKIIDVFICKLRKKLAQAGAG-ELIGTVWGRGYVLRDP 233 >gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61 I ++EDD + + L+S F+ + G + ++ + + ++LD+ L G Sbjct: 2 IFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGIS 61 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +L LR P+ +++ + DKV GL SGADDYI+KPF ELV+R++A+ R Sbjct: 62 ILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRRS 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 SR + I+ G L + + V+ G+ + LT KE++++ LL K L ++ L ++ Sbjct: 122 SRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLLTNI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E + +DV I LR+KL IETV G GY + Sbjct: 182 WGYDFDGETRTVDVHIRSLRQKLGECG---KLIETVRGIGYRI 221 >gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1] gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1] gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +K+E + G + + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 IEVIKEVRKDSQL-PILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L++N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 ENNVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKIE 227 >gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 221 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + FD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G + IE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + + + ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR Sbjct: 64 CRIIRQSSDVHIFML-TAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L ++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 229 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + L + ++V G +++ K D I+LDL L ++ G +V Sbjct: 5 VLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLMLPEMSGEDV 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R S P+ +++ S DKV GL+ GADDY++KP++ ELVARIRAI+RR Sbjct: 63 CRKIR-QHSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAE 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G ++++ A V V I + +EY+++E L +T+ L+ + Sbjct: 122 PATEEPQPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + K +DV + ++R K+ + + TV G GY + + Sbjct: 182 WGIGYVGDSKTLDVHVKRIRSKIEKDPVNPSLLVTVRGVGYKIVTPS 228 >gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25] gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25] Length = 237 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L + YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + +E L V + + G +E + E D ++LD+ + ++ GF Sbjct: 11 KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGFA 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +R P+ +L+ + + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 VTERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSS 129 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G ++V GDLS++ + + RI LTG E+ ++ELL R +++ Sbjct: 130 VQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISR 189 Query: 172 EMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + E + +++DV I +LR KL + I T G GY+ + Sbjct: 190 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMFQ 242 >gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Paenibacillus polymyxa SC2] gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Paenibacillus polymyxa SC2] Length = 224 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD + + L+ E V G D + L + D ++LD+ + + G+E Sbjct: 3 RVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMDGWE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ V+G G DDY+ KPF+ LVAR++A+++R R Sbjct: 63 LCRKLR-EQTDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRYRI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL + D + I L KE++++ L+ T T++ + ++ Sbjct: 122 MASKSVTIGDLVLRSDTFECQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ A I T+ G GY L Sbjct: 182 DYEGDERTVDVHIKRLRERFPEATQSFA-IRTIRGLGYRLE 221 >gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A + L + F V G + ++ FD ++LDLGL D GF+ Sbjct: 3 RILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGLPDTDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV IL+ + D V GL+ GADDY++KPF EEL+AR+R +R R Sbjct: 63 VLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVRLRMRNERP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L+++L + V V+G + LT +E+ ++ELL LT++ L+H++ Sbjct: 123 TELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DVF+ LR+K+ I TV G GY L Sbjct: 183 DYDPGSNVVDVFVRALRRKVGA-----ERIVTVRGMGYRL 217 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K ++ I++ L E + + G + +E + E+D I+LD+ + ++ G E Sbjct: 5 RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +L+ S I DKV GL +GA+DY+SKPF EEL+ARIR R Sbjct: 65 VCRRIR-QFSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKAL 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I ++ ++ V G I LT EY ++++L + KN LT++ + ++ Sbjct: 124 KNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DVFI LR K+ + I T+ G GYV+++N Sbjct: 184 YDYSGDTNVVDVFIRYLRSKI-DNERQDKLITTIRGVGYVIKDN 226 >gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 242 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L ++ L + F V + ++ + D ++LDL L G Sbjct: 8 KILVVDDDVRLRELLQRYLTEQGFTVKTANDAKEMDSILGSDTIDLLVLDLMLPGEDGLS 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 68 ICRRMRGNATMMPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVLRRHER 127 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A I GD N +++ QG I +T E+ ++++ L+++ Sbjct: 128 LVPSAPANAAENITIGDFVFNASTRSLSRQGTAIAITSGEFALLKVFVDHPRQPLSRDRL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + + IDV + +LRK + Y++T+WG GYV + + + Sbjct: 188 MQLARGRELDVYDRSIDVQVSRLRKLIEPDPAHPRYLQTMWGFGYVFIPDGEAD 241 >gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + +S+E L+ F+ G + A++LD+ + + G Sbjct: 9 RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR P+C+LS SS+ D++ GL++GADDY++KPF ELVAR+RA++RR+ Sbjct: 69 VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 128 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G L+V+L + G RI LT +E+ ++ +L+ L++ L + Sbjct: 129 ATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DVF+ LRKKL G I TV G G+VLR Sbjct: 189 WGYDFAADTNVVDVFVTYLRKKLEVD-GAPRVIHTVRGVGFVLRAE 233 >gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 239 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ +V GE G L ++D +++D + G Sbjct: 16 MKILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR +TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 76 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + +V I L +E++++E L +T+ M L +++ Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ + TV G GY+L+ Sbjct: 196 DYHFDPQTNVIDVHVSRLRGKIEKGFDKP-ILHTVRGAGYMLK 237 >gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 11/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + L ++ NVY G + +++ K + D IILD+ + + G + Sbjct: 6 ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIMMPKMDGIKA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R ++ P+ ILS DK+ GL GADDY+ KPF+ EL+ARI++ +RR + Sbjct: 66 CMKIR-EMLNVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYKQL 124 Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I +LS+N+ V ++ +I LT E++++ LL+ + + Sbjct: 125 NNNFKNTTKEVIQIDELSINISNHEVFLRDKQIKLTPYEFKILVLLAQNRGRVFSIASIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + V I ++RKK+ NYI+TVWG GY + Sbjct: 185 ESVWEEDYVASDRTVTVHIRRIRKKIG---KEYNYIKTVWGVGYKIE 228 >gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 1/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ L + + V G +G++L + ++D +ILD+ L ++ GF Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ +R PV +L+ S+ED+V GL+ GADDY++KPF+ +EL+AR+ A++RRS Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S++ G L+++ A+ V ++ L +E+ ++ELL +N +++ + ++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++DV I LR KL + TV G GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRP-FNLDMMVVTVRGVGYK 219 >gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] Length = 223 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD A++ + L+ E + V V + G + + D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S PV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 64 CRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGNVD 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G +++++ + + L+ KE++++ +L +T+E + ++D Sbjct: 124 QLTTGAHGV-KIDIESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIMRQVWDTT 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ +N Sbjct: 183 WWTSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224 >gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F V T G + D ++LD+ L DI G Sbjct: 6 RVLVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRPDLVLLDVMLPDIDGLL 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + L A PV ++ S + DDY++KPF EEL+ARI+A++RRSRG Sbjct: 66 LAERLVHAIGPVPVVFVTARDS-TADKVAGLARGDDYVTKPFRMEELIARIQAVLRRSRG 124 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL ++ + + V G I L+ E++++ + + L+K L+H++ Sbjct: 125 WDAPRPRLTVADLELDEETREVWRAGRPIRLSPTEFRLLRYFMINQGRVLSKAQILDHVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ ++ LR+K+ I T+ G GYVLR + Sbjct: 185 NYDFRGDANIVESYVSYLRRKI--DTTEPKLIHTLRGVGYVLRPPRE 229 >gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 240 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 12/231 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIPG 59 I+++ED++ LA +E L+ E V V G +E E D I+LDL L ++ G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R +R TP+ +L+ S+ D+V GL+ GADDY++KPF+ EL AR+ AI+RR Sbjct: 64 LEICRRVR-QSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 120 RGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I GDL+++ ++ V +G +HLT KE+ ++ LL+ ++ Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ ++ + +D I +LRKKL I T+WG GY Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 20/238 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ ++ I L L E F+ + G+ I L + Y+ D I+LD+ L G++ Sbjct: 6 KILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDGYD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREIR-KTSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124 Query: 122 H-----------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 + ++ DL +NL +V R+ + KE ++ L+ Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N T+E L+ ++ + + +DV + +LR+K+++ A + + TVWG GY Sbjct: 185 PNQVFTREQLLDRIWGYEYIGDTRTVDVHVKRLRQKINDHA--EWRLSTVWGVGYKFE 240 >gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + + ++ V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ G I TVWG GY + + Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 239 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ ++ G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWEAE 234 >gi|116494543|ref|YP_806277.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637982|ref|YP_001987148.1| Response regulator [Lactobacillus casei BL23] gi|227535480|ref|ZP_03965529.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631859|ref|ZP_04674890.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066090|ref|YP_003788113.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104693|gb|ABJ69835.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712284|emb|CAQ66290.1| Response regulator [Lactobacillus casei BL23] gi|227186890|gb|EEI66957.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526324|gb|EEQ65325.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438497|gb|ADK18263.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382058|gb|AEA53534.1| hypothetical protein LC2W_1200 [Lactobacillus casei LC2W] gi|327385212|gb|AEA56686.1| hypothetical protein LCBD_1189 [Lactobacillus casei BD-II] Length = 242 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 18/243 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+ ++A + + + E + V GE+G+ K FD I LDL L + Sbjct: 1 MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +L+ + D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAKEIRKISQTVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120 Query: 119 -------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLR 164 S + T ++ + + G +I LT KE+ ++ LS Sbjct: 121 AEVGAEVGAEQTTSEPPDGFDVETDHFKLSTKTREAYLDGKQIEGLTPKEFDLLHTLSKS 180 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E L ++D + + +D I KLR+K+ G I+TVWG GY ++ Sbjct: 181 PKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKVEKV--GPQIIQTVWGVGYKFDDS 238 Query: 225 AKD 227 D Sbjct: 239 GLD 241 >gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L ++ G E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPEMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +++ S DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLR-QRSYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQST 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A G + ++++ V V G + L KE++++ELL LT+ ++ Sbjct: 122 EAAEPGAPTLAAGPVRMDIERHVVTVNGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR KL YI TV G GY Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKLEPEPSAPRYIVTVRGLGYKFEP 227 >gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|282861156|ref|ZP_06270221.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282563814|gb|EFB69351.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 220 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ L +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGFAVDVVHDGLEGLHLAGQGGYDLVVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARIRA++RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIRALLRRRG 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + S + G L ++ A+ V + LT KE+ ++E L++R ++K L H++ Sbjct: 121 GGSASPVLTAGTLRLDTAARRVHRGEDEVTLTAKEFAVLEQLAVRAGEVVSKADILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + I++V+I LR+KL AA I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRLE 218 >gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] Length = 223 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L E F + GE+ +++ + D I+D+ + + GFE Sbjct: 4 RVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPVMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ L+ PV +L+ +DK+RG G DDY+ KPF+ EL+AR++A+++R Sbjct: 64 LVENLK-EFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKRYSV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++I D+ + + + IHL K+++++ L+ + ++E + ++ Sbjct: 123 NTSNIIKLNDVEFDGEKYEIRYHDEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I ++R+ L + G K + TV G GY + Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKVE 221 >gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 244 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 2/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED++ LA I L LK+ N++V + + + + + D I++D L D G Sbjct: 15 HILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIEHKKLDLILMDRMLPDGDGIM 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+ S D V GL++GADDY+ KPF+ EL AR++A++RR + Sbjct: 75 LCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLRRGKT 134 Query: 122 HAQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S +N + V + LT +E+ ++ L+ ++ L ++ Sbjct: 135 QHEQTQQIEFNSVSINSSTREVTAFNKALTLTAREFDLLLFLAKHPQQVFSRMQLLEAVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ I +LR KLS + + ++TVWG GY Sbjct: 195 GYNYDGYEHTVNSHINRLRNKLSLCSPEHDLVKTVWGVGYKFSPPE 240 >gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +D+K + + K NF V GED ++ + +FD ++LD+ + GF+ Sbjct: 3 KVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKKDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ +K+ GL+ GADDYI KPF+ E++ARI AI+RR Sbjct: 63 VCREVR-KFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L ++L+ TV++ I LT KE +++ L+ +N T+E L+ + Sbjct: 122 KNDDSEKIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D I +LR K+ N K I+T+WG GY Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKMDNYEHKKWNIKTIWGVGYKF 224 >gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134] gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134] gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 4 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 64 SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+ ++ ++ Sbjct: 124 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ A IETV G GY L Sbjct: 184 YAGDDRTVDVHIKRLRERF--ATTHDFRIETVRGLGYRLE 221 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S DL ++ + V+ I LT +E+ ++ L +N L +E + ++ Sbjct: 124 VKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ I TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LIHTVRGVGYVLK 226 >gi|323692857|ref|ZP_08107083.1| hypothetical protein HMPREF9475_01946 [Clostridium symbiosum WAL-14673] gi|323503086|gb|EGB18922.1| hypothetical protein HMPREF9475_01946 [Clostridium symbiosum WAL-14673] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-GFE 61 +L+++D+ A+ + + S + G + I + + + + I+LD+ + GFE Sbjct: 6 VLIVDDEPAIRKLLTRVAASCGYESLTASNGHEAIVMSRDSKINLILLDIMMNGNDEGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR + P+ +LSG + D + GL GADDYI KPFN L A+++A++RR Sbjct: 66 VIRRLRASGNEIPIIVLSGRTEDFDTLYGLDIGADDYIGKPFNPVVLGAKMKALIRRDMK 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G N + I L+ +E +++L TKE H+ Sbjct: 126 ASRPLPDFITAGPFCYNSMTMELFKDKRPIPLSSRENVLMKLFLCNAGRVFTKEQLYEHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G + I V+I LR K+ Y++TVWG GY Sbjct: 186 WNG-SVVDANTIMVYISHLRNKIEEDPKNPRYLKTVWGLGYKF 227 >gi|311104327|ref|YP_003977180.1| transcriptional activator protein IrlR 2 [Achromobacter xylosoxidans A8] gi|310759016|gb|ADP14465.1| transcriptional activator protein IrlR 2 [Achromobacter xylosoxidans A8] Length = 230 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++RALR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D + + +IDV I +LR K+ + A I TV G GY L +A D+ Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTL--DAPDDAP 228 >gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD+ + + L L+ V + G + L + + D +ILD+ + ++ G+ Sbjct: 3 KILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIMMPEMDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR P+ +L+ V+G + G DDY+ KPF ELVAR++A+++R + Sbjct: 63 DLCRELR-RYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQ 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +N VE I L KE++++ L TLT+E + ++ Sbjct: 122 VSISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR++ G I T+ G GY L Sbjct: 182 YDFEGNERTLDVHINRLRERFPEETFGFK-IRTIRGLGYRLE 222 >gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I+ L ++N+N+ V G +GI+ FD I+LD+ + ++ GFEV Sbjct: 5 ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + LR + P+ L+ + +D+++G G DDYI+KPF+ L+ R++A+ R + Sbjct: 65 AKMLR-NHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + +L+V+ D V I LT KE+++++LL + LT+E+ + ++ Sbjct: 124 SWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ID I LRKKL YI+TV G GY + E Sbjct: 184 DYSGETRMIDTHIKNLRKKL-----NLPYIKTVKGIGYKIDE 220 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F+V G + +E E D ++LD+ L D+ GF Sbjct: 13 RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + TPV L+ + D V GL G DDY++KPF+ EE+VARIRA++RRS+ Sbjct: 73 VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQA 132 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H DL ++ DA+ V G + L+ E++++ L L L+K L+H++ Sbjct: 133 HDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVLREN 224 + E I++ +I LR+K+ + A I T G GYVL+ Sbjct: 193 EYDWRGESAIVESYISYLRRKIDVPGPDGAPTVPLIHTRRGIGYVLKTP 241 >gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] Length = 233 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A + L L E F+ + GE + Y+ + I+LDL L I G++ Sbjct: 5 KILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGIDGYQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 65 VCREIRTRSNT-PIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +NL +V V GH + + KE +++ L+ N T+E Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + G + TVWG GY Sbjct: 184 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWS--LSTVWGIGYKFE 231 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEKNTYI-MMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + ++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986] gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986] Length = 250 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + +I++ L E F V GE+ I+L ++ D +I+D+ + + G Sbjct: 24 ILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIMMPVLDGIRA 83 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +R Sbjct: 84 TMQIR-ENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYKKL 142 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V GDL ++ + K V V G I LT EY ++ LL+ + + Sbjct: 143 GNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSIDEIYE 202 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + ++ Sbjct: 203 QIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKH 250 >gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 233 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 8/234 (3%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 M+ +L+IEDD +A I+L ++ + V GE G+E D I LD+ L Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G+E+ + +R P+ +L+G +DK++GL GADDY+ KPF+ ELVAR++A+ Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 116 VRRSRGHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +RR+ V L V+ I + KE ++ L+ N T++ Sbjct: 121 MRRADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ ++ E + + IDV I ++R+KL+ A K I+T+ G GY E + Sbjct: 181 LLDQIWGYAFEGDPRTIDVHIKRIREKLTEADA-KWTIKTIRGVGYKFLEKEHE 233 >gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 218 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 2/216 (0%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 +DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V L Sbjct: 2 DDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDVCFEL 61 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126 R P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 62 R-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 120 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 I GD+ +N V V + L KE++++ L + T ++E + ++ E Sbjct: 121 IQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGN 180 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +DV I +LR+K K I+T+ G GY L Sbjct: 181 ERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 215 >gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 233 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +ILL+ED++ LA S++ L+ E+ V G++ ++L +E + IILD L + G Sbjct: 4 KILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F VLR +R PV +L+ I DKV GL GADDY++KPF EEL+ARI +R S Sbjct: 64 FSVLRRIR-KHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHS 122 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + GDL+V+ K V I LT +EY+++ +L + ++ +++ L+ Sbjct: 123 QKTDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E + I+DV++ LR K+ + I TV G GY+L +N +D Sbjct: 183 VWGVDFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQNVQD 232 >gi|255525555|ref|ZP_05392490.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255510739|gb|EET87044.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 3/225 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+EDD++L I L E V+ E+G E+ D IILD+GL D G Sbjct: 1 MKNILLVEDDESLNRGISFKLNKEGMKVFAAKNLEEGREIFNNTSLDLIILDIGLPDGNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE +R + + + D V GL GADDYI+KPF+ L+++I A++RR+ Sbjct: 61 FEFCSEIRKQSGVLIIFL-TACDEEVDIVTGLDMGADDYITKPFSFMVLMSKINALLRRN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S IV+G ++ + V +I L+ E ++++ L L + KE LN L+ Sbjct: 120 SSSNSSKIVSGSIAFYPEEMKVLKDEKQIDLSKTELRLLKYLMLNSGQIIKKEQLLNELW 179 Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D D + I V I +LR+K+ YI+TV G GY+ E Sbjct: 180 DLDGDFVDSNTIAVNIRRLREKIEVNPSKPKYIKTVRGIGYIWSE 224 >gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis JLW8] gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 5/233 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ A+ + L + N GE ++L + D I+LD L + G E+ Sbjct: 5 ILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWMLPGMNGLEL 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ + P+ +L+ DKVRGL+ GADDY++KPF+ EL ARI+A++RR Sbjct: 65 ARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L ++ V I L E++++ T+ L+ ++ Sbjct: 125 PQMTDDPIELNGLRLDPTTHRVTGNQKTIDLGPTEFRLLHFFMTNSERVHTRSQLLDKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 R E + +DV I +LR L +A+G ++ I+TV G GY L E ++ Sbjct: 185 GDRVFVEDRTVDVHIRRLRNAL-SASGHEDLIQTVRGAGYRLSSQ-PSEASQH 235 >gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R +I TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V+G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKE 227 >gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 236 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDDK + +E+ LKS+ + V+ G +G++ + E D I+D+ + + G Sbjct: 5 RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVMMPKMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV LS S DK+ GL GADDYI+KPF EL+AR+ + +RR Sbjct: 65 MTAKLR-EKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYHR 123 Query: 122 H----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G L VN + V V + +T E++++ LL Sbjct: 124 FLDRLSSKQAEDPRIHRLGGLEVNEETVEVMVDDKPVKVTPIEFKILLLLIQNPGRVFPA 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++ R + V I LR+K+ Y++ VWG GY + + Sbjct: 184 EEIYERVWNERA-INTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEKQ 235 >gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ G++ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-QKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + + ++ V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ G I TVWG GY + + Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGYKIEK 230 >gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 235 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 14/235 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ +L++ED+K + I + L ++ +NV+ G +G+++ I+D+ + + Sbjct: 1 MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNETIHLAIVDIMMPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ LR PV +LS S DK+ GL GADDYI+KPFN EL+AR+ + +R Sbjct: 61 DGIQMTMKLRSK-FDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLR 119 Query: 118 RSRGH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 R + + + L +N + K V V + LT E++++ LL Sbjct: 120 RYSKYLNVINNLEEKNNNFIIDGLELNAETKEVFVDEESVKLTPIEFKILHLLIKNPGRV 179 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 180 FSADEIYEKVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233 >gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 241 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD ++A +E+ L +E + V V + GE G+ L + D II+D+ L + GFE+ Sbjct: 19 VLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFEL 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + + PV +LS + DKV GL+ GA+DYI+KPF+ EL+AR++A++RR Sbjct: 79 LRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAIA 138 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GD+ +N + V I LT E+ ++ L+ L++E ++ Sbjct: 139 RADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVWG 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ID FI +LR KL A ++ TV G GY Sbjct: 199 PTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241 >gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 234 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ +A I L+ + V G + + + D +ILDL L I G + Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + ++ K S P+ +++ S + V GL+ GADDY+ KPF+ EL+AR+R+++RR Sbjct: 71 LCKKIK-EKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I G++ +NL A + + LT EY+++ L T++ L+ Sbjct: 130 GEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLD 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I +LR KL + K +ET+ G GY E Sbjct: 190 RVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 233 >gi|322831802|ref|YP_004211829.1| transcriptional regulator [Rahnella sp. Y9602] gi|321167003|gb|ADW72702.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 239 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ LA + L++ + G D I L K I+LDL L G Sbjct: 13 KILIVEDEPKLAQLLIDYLEAAGYATQWLPDGHDVITLVKNQPPALILLDLMLPGSSGLS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 73 ICRDIR-QFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKVILRRCVR 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + L ++ QGH + LT E+++++ LS++ T+E+ LN+LYD Sbjct: 132 PGEHVAKETGLHIDEARFQATFQGHELELTPAEFRLLKTLSVKPGYVFTREVLLNNLYDD 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL + G K +I V+G GY Sbjct: 192 YRVVTDRTIDSHIKNLRRKLESLDGEKAFIRAVYGVGYRWEAE 234 >gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271] Length = 236 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 73 QVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRNT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + + LK V G DG+ L +D++I+D L + G Sbjct: 1 MRILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ +R A +TPV ILS + ++D+V+GL++G DDY+ KP+ EL+ARI A R S Sbjct: 61 TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L A+TV G I L +E++++E L +T+ M L +++ Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR+K+ I TV G GY LR Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDFDQA-LIHTVRGAGYTLR 222 >gi|160881638|ref|YP_001560606.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430304|gb|ABX43867.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 234 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++DDK +A +E+ L S+ + V+ +G+E+ + +ILD+ + I G Sbjct: 5 INILVVDDDKEIAELVEIHLVSDGYPVFKAYNAMEGLEILQKENIKLVILDIMMPGIDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL+AR+++ +RR Sbjct: 65 SMCKKIR-ETSTVPIIMLSAKSADIDKIIGLSTGADDYVIKPFNPLELMARVKSQLRRFT 123 Query: 121 GHAQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S L +N + V G + LT E+ ++ LL+ + + Sbjct: 124 KFNPSTYEDKNEKEITVTHLVINKETHVVMAYGKEVRLTPIEFDILYLLASNAGRVFSTD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +LR+K+ + I+TVWG GY + + Sbjct: 184 EIFERVWNEKMYEANNTVMVHIRRLREKIEMDSRNAEIIKTVWGVGYKIEK 234 >gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +EL L+ E + V G DG+E FD IILD+ L + G E Sbjct: 5 KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV +L+ I DKV GL GADDYI+KPF EEL+ARIR + R Sbjct: 65 VLRRLR-QNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L +N+ + LT E+ +++ L + KN L++E L ++ Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I LR K+ + +I TV G GY L++ Sbjct: 184 GYDYTGDTNVVDVYIRYLRSKI-DDRFNHKFIYTVRGVGYQLKDE 227 >gi|299782927|gb|ADJ40925.1| Two-component response regulator [Lactobacillus fermentum CECT 5716] Length = 240 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 15/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIP 58 M+IL+IED++++ + + K E ++ GE+ +E D ++LDL L Sbjct: 1 MKILMIEDNRSVCEMMSMFFKKEKWDTTFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R + P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 120 Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 + ++ I T +N + + G+ I +LT KE+ +++ L+ + Sbjct: 121 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 T+E L ++D + + +D I KLR+K+ G I+TVWG GY ++ D Sbjct: 181 VFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSEAD 238 Query: 228 E 228 + Sbjct: 239 D 239 >gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] Length = 232 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 11/233 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++DD + IE+ LK + F V+ G + +++ + ILD+ + + Sbjct: 1 MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R +R + + PV LS ++ DKV GL +GADDYI+KPF+ ELVAR++A +R Sbjct: 61 DGIEVCRRIR-EQYNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 119 Query: 118 RSRGHAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R Q ++ ++ V + G I+LT EY ++ L++ +N T Sbjct: 120 RYTYFNQVPSEVHKNKIQIRGLEIDELSRKVLLYGKSINLTKTEYDILHLMAKNRNRVFT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ R + V I +LR K+ I+ VWG GY + + Sbjct: 180 LEEIYESIWRERAHESNNTVMVHIARLRNKIEEDPKKSTIIQNVWGVGYKIED 232 >gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 237 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + L E F V + G + + +E I+LDL L G E Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S DKV GL +GADDY+ KPF ELVAR++A++RR R Sbjct: 73 VCRRIRTFSDAYILML-SARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L L +++ A+TV V + + LT E+ ++ L+ R + ++ + + Sbjct: 132 SSLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+DV + LR+KL + A +I TV G GY LR Sbjct: 192 WGSSWFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSLR 235 >gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 234 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD LA L+ V G G++ FD ++LDL L G EV Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120 R LR PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRA+VRR Sbjct: 70 RELRSRSDV-PVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ G L V+ A+ V + G + LTG E+ ++ L+ R L +E + Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV + +LR+KL + I+TV G GY+L Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229 >gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+K +A I+ L++E + VT G++ I + + FD +ILDL L D+ G E Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ P+ +L+ D++ GL GADDY++KPF+ +ELVAR+RAI+RR+ Sbjct: 67 ICKRIRLQSQV-PILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL V+L + + LT E++++ + +++ + Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDV I LR K+ YI TV+G GY + Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVK 229 >gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + I + L + +N+ G++ ++ K + F IILD+ + ++ G+E Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V +R ++ P+ +L+ + DKV+GL GADDY++KPF EEL+AR+ A++RR Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + +L +++D V VQ + +HLT KE+++++LL L ++ L + Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I +R KL IETVWG GY L+E Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228 >gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA I L+ E + ++ G +G+E + D I+LDL L + G +V Sbjct: 4 ILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTDV 63 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R PV +L+ DKV G + GADDY+ KPF+ EL+ RI+AI+RR+ Sbjct: 64 CKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRNA 123 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G +S++ + V V G + T E++++ L +R ++++ L Sbjct: 124 NANSPAESAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLLR 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +D + +LR K+ A + I+TV G GY L Sbjct: 184 DVWGYNFVEDTRTVDTHVTRLRTKMGEAG---DMIKTVRGFGYKLE 226 >gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TP+ +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A + L+ V GE+G+ FD +I+D L G Sbjct: 1 MRILVIEDDLEAAAYVVKGLRESGHIVDHAADGEEGLTFALSSTFDVMIVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV LS + ++D+++GL++G DDY++KP+ EL+ARI + R + Sbjct: 61 SVVETLREECVRTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRAN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G L ++L A+ V G I L +E++++E L +T+ M L +++ Sbjct: 121 PDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR K+ + TV G GY LR Sbjct: 181 EYHFDPQTNVIDVHISRLRAKIDKNFEQP-LLHTVRGAGYSLR 222 >gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1] Length = 273 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD+ + +I++ L E F V G + +EL K +E + +I+D+ + + G Sbjct: 45 KILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDGIR 104 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 105 TTLKVR-ETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 163 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G L +N + K V V G I LT EY ++ LL + + Sbjct: 164 LGNMHTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 223 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 224 YEEIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 273 >gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + +E L + V + G + +EL + E D ++LD+ + ++ GF Sbjct: 14 KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGFA 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ +R P+ +L+ + + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR+ Sbjct: 74 VVERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRANT 132 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 GDLSV+ + + RI LTG E+ ++ELL R +++ Sbjct: 133 SQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPISR 192 Query: 172 EMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + E + +++DV I +LR KL + I T G GY+ + Sbjct: 193 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMFQ 245 >gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + + G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL +A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 220 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D +LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 EVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220 >gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 221 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L I L F V G + +DA++LDLGL +PG Sbjct: 1 MRVLLVEDDPLLGDGIRAGLMQAGFAVDWAKDGREAELAVSGEPYDAVVLDLGLPRLPGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R +K P+ IL+ S+ D+V GL +GADDY+ KPF+ EL AR+RA+VRR++ Sbjct: 61 DMLRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVRRAK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I G L ++ ++V + G + L+ +E+ ++ L L L+K LY Sbjct: 121 SQIEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E E ++VF+ LR+KL+ + I TV G GY++ + Sbjct: 181 WGEEIESNAVEVFVHHLRRKLA-----PDLIRTVRGVGYMIAKE 219 >gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803] gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 117/226 (51%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L SE ++V D G D +++ K + IILD+ + ++ G Sbjct: 6 IQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ ++ G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 119 SRGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R S + GD+++N + + G+ + L KE++++ LL+ + +E L+ Sbjct: 126 YREEDTSSNIVKLGDITINREEYKIVQNGNEMALPRKEFELLSLLASKPGKVFKREDILD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + IDV I KLR+K+ + I+T+ G GY Sbjct: 186 NVWGNDIVVGGRTIDVHIRKLREKIGDDK-----IKTIKGVGYKFV 226 >gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 232 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G++ Sbjct: 7 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 ++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 67 IVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++D Sbjct: 127 VIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + IDV + +LR K+ + I+TV G GY+L Sbjct: 187 MNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 227 >gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] Length = 250 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 119/228 (52%), Gaps = 11/228 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA + L+ E F V V G D I + + + D +ILD+GL I G EV Sbjct: 20 LVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLEVC 79 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V + + + D V GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 80 RQLRTFSDAYIVML-TARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVLQ 138 Query: 124 Q----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G LS+N+ A+ V + G +I LT E+ ++E LS R L++ Sbjct: 139 SATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLSRRQ 198 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + DG ++DV I LR+KL + A YI TV G GY + Sbjct: 199 LLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 246 >gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL J1-208] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 61 FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDED-KDGIRIVTVRGVGYKLEE 223 >gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989] gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989] Length = 233 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + +I + +K++ +NV + G++G+E + + I+D+ + + G + Sbjct: 5 ILVVEDEQGIREAIGIYMKNQGYNVILAANGKEGLEKIETNDIHLAIVDIMMPVMDGISM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R P+ LS S DK+ GL GADDYI+KPF ELVAR+R+ +RR Sbjct: 65 VMEAR-KHHDFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRRYEQI 123 Query: 123 --------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL +N K V + I LT KE+ +++LL + + Sbjct: 124 LNLKNETKNEDEYMIGDLVLNNTTKRVTLNSRDIKLTPKEFDILKLLISHPGQVFSSQQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I V I KLR+K+ YI+ VWG+GY + Sbjct: 184 YELVWKEEA-INTETIMVHIRKLREKIEANPKKPIYIKVVWGQGYKME 230 >gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49] Length = 239 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L +E + V + G +G+E K + IILD+ + ++ G Sbjct: 18 IKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMPEMDGI 77 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ +V G +GADDYI+KP + L+++++A++RR Sbjct: 78 EACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVKALLRR 137 Query: 119 SRGHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ G++ +N + V V + L KE++++ LL+ + +E L+ Sbjct: 138 FKSPSKVDTVVKIGNIIINREEYQVTVGKTELVLPRKEFELLSLLASKPGKVFKREEILD 197 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + +TV G GY + Sbjct: 198 TVWGNEVVVGGRTIDVHIRKLREKIGDD-----RFKTVKGVGYKIV 238 >gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 244 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60 IL++ED++A+A + L E + V V D G ++ + D IILD+ L DI G Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 DL+++ ++ RI LT +EY+++ L N LT+++ Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++ E +++V++ LR+ L A G ++TV G GY LR ++ Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLE-AGGEPRLLQTVRGAGYALRLPTEERA 239 >gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++L + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERLKDNPDFE--IVTMRGIGYK 232 >gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 228 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ + +++ L+ E + V+V G +G+ + + + D +ILDL L D+ G Sbjct: 1 MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDFVILDLMLPDMKGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + +L+ S+E ++ GL GADDY+ KPF+ ELVARI+ +VRR Sbjct: 61 EICQQIRAISDVY-LFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMN 119 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +L G L ++ + V+VQ + T E+ ++ LL K LT+E +N + Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I +RKK+ YI TV GY Sbjct: 180 LGFDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222 >gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] Length = 237 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + L E F V + G + + +E I+LDL L G E Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 V R +R + V +LS DKV GL +GADDY+ KPF ELVAR++A R Sbjct: 73 VCRRIRTFSDAY-VLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S ++L L +++ A+TV V + LT E+ ++ L+ R + ++ + + Sbjct: 132 SSMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+DV + LR+KL + A +I TV G GY LR Sbjct: 192 WGSPWFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSLR 235 >gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3] Length = 258 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G E+ + + D ++LDL L + G E Sbjct: 38 RILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMDGIE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ S D VRGL+SGADDY++KPF ELVAR+RA +R Sbjct: 98 ICRLIRAESDV-PIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +V G++++++ ++ G +I LT E+ ++ L+ + ++E+ L ++ Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWGY 216 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++ + +LR K+ + TV G GY Sbjct: 217 RHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGYK 255 >gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ +++ +I L+ E F V G + +E ++ D ++LD+ + + G+ Sbjct: 2 IKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVMMPKMNGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L A + +L+ + I DKV GL+ GADDY++KPF+ E+VAR++A+ RR + Sbjct: 62 EVCRKL-EAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRRRQ 120 Query: 121 GHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + + L ++TV V G LT KE+ ++ LL+ + ++E Sbjct: 121 IESPEQDSDKEGRLELGGIVIELLSRTVRVDGEICDLTPKEFDLLALLAKHPDRVYSREA 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L +++ + +D+ + +LRKKL G I+TV+G GY Sbjct: 181 LLEQVWEMDFAGGTRTVDIHVQRLRKKLGEWQG---LIQTVYGIGYK 224 >gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAYQP-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E +DV I +LR K+ + I TV G GY L+ A Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFENKLIMTVRGMGYRLQAEA 222 >gi|45655829|ref|YP_003638.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602800|gb|AAS72275.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 243 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD + + I L S +++ + GE+G++ K D +ILDL L DI G Sbjct: 3 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +TP+ I++ + D++ GL+ GADDYI+KPF+ EL R+ RR Sbjct: 63 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 122 Query: 120 RGHAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A G ++ + V ++ + ++++ KE+ +++L++ ++ Sbjct: 123 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 EM L ++ + ++ID + ++R KL + +IET+WG GY +N Sbjct: 183 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 235 >gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ +A +++ L++E F V + + GE + L + ++ I+LDL L G+ Sbjct: 1 MQVLVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR A I+TPV IL+ D+ L GADDY++KPF+ L+ARIRA++RRS Sbjct: 61 DVCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ A R+ LT +E+ ++E L +T ++K L ++D Sbjct: 121 PQRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I++V++ LR+K+ + G++ I+TV G GY L Sbjct: 181 AWFEGDPNIVEVYVGYLRRKI-DIPFGRSAIDTVRGVGYRL 220 >gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system with CusS [Edwardsiella tarda EIB202] gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system with CusS [Edwardsiella tarda EIB202] gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR [Edwardsiella tarda FL6-60] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + D G G L +D IILD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 E++R LR A P+ +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 EIVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL+V L ++ V G RI LTGKE+ ++ + L + + + ++ Sbjct: 121 PPIPESQFHVADLTVELLSRKVTRGGKRITLTGKEFTLVTFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + IDV + +LR K+ I+TV G GY+L D Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDF-EPKLIQTVRGVGYLLEAPDVD 227 >gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 236 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ ++ I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233 >gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K LA + L+ E + V G G+ + + D I+LDL L + G EV Sbjct: 4 VLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMGTEV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ A+++ PV +L+ D+V G + GADDY+ KPF+ EL+ R+RA+ R+ Sbjct: 64 CRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G L ++++ V V G + LT E++++ L+ R ++E+ L +++ Sbjct: 124 PASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D + +LR KL A I+TV G GY L E+ Sbjct: 184 GYSYLGDTRTVDTHMTRLRTKLGAAG---ELIKTVRGFGYKLEES 225 >gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL+ + L +E ++V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ GDL ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 APERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227 >gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD L + L+ + V GEDG + +D ++LDLGL + G Sbjct: 1 MRALVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGLPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +KV G +GADDY++KPF+ EEL+AR+RA+ RR+ Sbjct: 61 TVLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + I G LS++ V + G + +T E++M+ L+ ++ +++ + H+YD Sbjct: 121 GHTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKK+ IETV G GY L + Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGTD-----RIETVRGLGYRLVDPV 220 >gi|21220620|ref|NP_626399.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788240|ref|ZP_05526671.1| two component system response regulator [Streptomyces lividans TK24] gi|289772132|ref|ZP_06531510.1| two component system response regulator [Streptomyces lividans TK24] gi|4539212|emb|CAB39870.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702331|gb|EFD69760.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++ L++ F G+ E FD ++LD+GL GF Sbjct: 3 RILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A+++TPV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R + Sbjct: 63 VLRELREARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +G LS++L + +G + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL +ETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRKKLGA-----RQVETVRGMGYRL 218 >gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 248 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 83 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 243 >gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 275 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60 R+L+++DD +A L ++V D G +E D ++LDL L + GF Sbjct: 44 RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPGGMDGF 103 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R PV +L+ +D++ GL++GADDY++KPF+ ELV R+ A++RR R Sbjct: 104 EVCRRIRAR-GPVPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWR 162 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 I + + A+ G + LT +E+ ++ T+E + Sbjct: 163 RTEPGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMRE 222 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V + +LR K+ I+TVWG GY Sbjct: 223 VWGWDF-GDLSTVTVHVRRLRGKVETDPARPALIQTVWGVGYRF 265 >gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] Length = 239 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L + V G D +E+ + I+LDL L + GF+ Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 62 VLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL LR + + V +L+ D++RGL GADDY++KPF+ ELV R+ AI+RR+ Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +V G L ++ A TV V G + LT E++++ L+ R+ + L Sbjct: 130 GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLE 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + + + +D+ + +LR KL A IETV G GY LR +A Sbjct: 190 TVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRASAP 236 >gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 228 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDDK L I ++LK V + + L F+ I+LD+ L D G E Sbjct: 3 RILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNNNFELILLDINLPDRSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ ++ + +D V G +G DDYI+KPF+ E + RI+A++RR+ Sbjct: 63 LCNEIR-KKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTGT 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+ +G++S+N + V + LT EY+++ LL+ LT+++ L L+ Sbjct: 122 EDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWGT 181 Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + V + +LR+K+ + YI+TV+G GY E + Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGYTWGEES 226 >gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans TK24] gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRR 118 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A R Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + V GDL V+ A+ V + LT KE+ ++E L +R ++K L H+ Sbjct: 121 QGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + + I++V++ LR+KL I TV G GY L Sbjct: 181 WDFAYDGDPNIVEVYVSALRRKLRA-----GLIRTVRGAGYRLE 219 >gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 234 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ++ + L+ E+F V + L + + I+LD+ + GFE+ Sbjct: 7 ILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVMMPGQNGFEL 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + S P+ LS DK+RGL G DDYI K + E+VAR++A++RRS Sbjct: 67 CRTIR-SSSSVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSSAQ 125 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L +NL + V V G I LT +E+++++L R + + + Sbjct: 126 QEQERSLAVLDYDEGRLQINLSTREVFVDGTSISLTPREFELLQLFVERPRQVFSYDHLI 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L++G + + V + +LR K+ + Y+ VWG GY Sbjct: 186 DKLWEG--VGDKHTVRVHLSRLRDKIESDPAQPRYLINVWGVGYRFE 230 >gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 225 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 125/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+K L SI L+ + + G++G+ELC +D I+LDL L + G Sbjct: 1 MHILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + STPV ILS I+DKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 EILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G +S + + + G + LT KE ++E L +N ++ E + H++D Sbjct: 121 IQQDVCLQCGRISFDTRTRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G I V I LRKKL A G + I+ G+GY+L E+ Sbjct: 181 GSVNSLSNSIRVHISSLRKKLRTALG-FDPIQNKIGQGYILTED 223 >gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 239 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K LA + L+ + V +T G ++ + +E D ++LDLGL + G E Sbjct: 17 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A V +L+ ++ GL GADDYI+KPF+ ELVAR+ A++RR R Sbjct: 77 VCRRVR-AFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 135 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GDL ++L A V G + LT E+ ++ LS R + ++ ++ + Sbjct: 136 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +++DV I LR+KL YI+TV G GY + E Sbjct: 196 WDPAWVGDERLVDVHIKNLRRKLDANPA--RYIDTVRGVGYRMAEQ 239 >gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLN 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + EFD IILD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSM-PIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++++ V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI+T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIKTIRGVGYKIEK 221 >gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 245 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 113/221 (51%), Gaps = 4/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD LA L+ V G G++ FD ++LDL L G EV Sbjct: 21 LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLMLPGKDGLEVC 80 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120 R LR PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRA+VRR Sbjct: 81 RELRSRSDV-PVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G L V+ A+ V + G + LTG E+ ++ L+ R L +E + Sbjct: 140 GPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAGG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV + +LR+KL + I+TV G GY+L Sbjct: 200 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240 >gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L+ + + L+ E + V G + + + DA++LD+ L D+ G E Sbjct: 7 RILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIMLPDMDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR Sbjct: 67 VLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 126 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 V GDL +N +++ V G I LT E++++ L+K L+ + Sbjct: 127 STIWDGAVLVVGDLIMNEESREVTRAGREIRLTATEFELLRYFMRNPRRVLSKAQILDRV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++++++ LRKK+ AG I T+ G GYVLR Sbjct: 187 WNYDFGGQANVVELYVSYLRKKI--DAGRPAMIHTMRGAGYVLRP 229 >gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] Length = 221 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 220 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK + I+ L F+V G+ G+ +DA++LDL L + G Sbjct: 1 MRVLLIEDDKLIGDGIKAGLIKMGFSVDWFTEGKQGLNALDSAPYDAVVLDLSLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ + G +S++ TV +G I+L KE+ ++ELL + L + + +Y+ Sbjct: 121 GQVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I+V I LRKK ++ +I TV G GY L E Sbjct: 181 WDDDVSSNAIEVHIHHLRKKFGSS-----FIRTVHGIGYTLGE 218 >gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++++D+ + I+L+L +E F V + G + +++ + + I LD+ L + G+ Sbjct: 4 IKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVMLPGLDGW 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R + + P+ IL+ K+ G + G DDYI+KPF+ +E+VARI+A+++R+ Sbjct: 64 TVCKKIR-ERSNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRAN 122 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S + T + +N + V + + LT KEY ++ K+ T+E L Sbjct: 123 IIPLSEESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +D I ++R+KL K YI TVWG GY + Sbjct: 183 VWGYDFYGDLRTVDTHIKQIREKLGEY---KKYISTVWGVGYKFK 224 >gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPILVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230 >gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] Length = 235 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + +I + +K++ ++VYV + G G+EL + + I+D+ + + G + Sbjct: 5 ILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR + Sbjct: 65 TMKLR-ENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQI 123 Query: 123 AQSLI-----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL +N + K V ++ +HLT KE++++ELL + + Sbjct: 124 LRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFSA 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + I V I KLRKK+ YI+ VWG GY + + Sbjct: 184 EQIYENVW-EEEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGYKIEK 234 >gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] Length = 251 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ + + L+ + V G G L D IILDL L + G Sbjct: 3 RILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + P+ +L+ + +DK+ G +GADDY++KPF +EL+ R+RA++RR+ Sbjct: 63 VCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRA 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + G I LT E+ ++ L R T++ Sbjct: 123 DRIPQTAKHGEILTYGPLTLVPERFEAVWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++ I V I LR KL YI+TV+G GY L Sbjct: 183 LQEVWGYEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230 >gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 232 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 10 MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 232 >gi|225389850|ref|ZP_03759574.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme DSM 15981] gi|225044097|gb|EEG54343.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD+ + L+S+ + + G D + FD I+LD+ + + GF Sbjct: 5 RILIADDDQEILTITSRSLQSQGYLTFECRNGIDAYQAIVSQPFDLILLDINMEGLDGFR 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R +I TP+ I++G + ++V GL GADDYI KPF L AR++A++RR + Sbjct: 65 IIQKVREQQIFTPILIITGNAEEYNEVFGLSIGADDYIIKPFRPSALCARVKALLRRQQQ 124 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G ++ ++ + + LT KE +++ N +KE ++ Sbjct: 125 FQKDNATLKAGPFQMDRESYSFYKNNVELVLTPKERLLMQHFLHNVNHVFSKEQLYTAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V I LR+K+ + Y+ TV+G GY Sbjct: 185 K-DNCVDDNTVMVTIRNLRQKIEDDPKSPKYLLTVYGIGYKFV 226 >gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii] Length = 224 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 132/226 (58%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ LAH ++ L N+ V + G DG +D ++LD+ L I GF Sbjct: 1 MRILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR TPV +L+ +ED+VRGL++GADDY+ KPF EL+ARI+A++RR R Sbjct: 61 WILKDLR-ETKDTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ GDL ++L + G R+ LT KE+ ++ LL R+ L++ M ++D Sbjct: 120 GQESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+V + +LR K+ + + + TV G GYVL E + Sbjct: 180 MNFDSDTNAIEVAVRRLRAKI-DDPFDRRLLHTVRGMGYVLEERGE 224 >gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016] gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 227 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + IE LK E V + + GE+ + K D ++LD+ + + G+ V Sbjct: 5 VLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPLMDGWTV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ ED++ G Q G D Y++KP + + LVA+I+A++RR+ Sbjct: 65 CRELR-KISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123 Query: 123 AQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +N + V++ G I+L+ KE++ + L K+ L++E L+ ++ Sbjct: 124 EINQVKDNTYDGLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDAIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D + +LR+KL + I TV G GY Sbjct: 184 GIDYYGDLRTVDTHVKRLREKLGVKSY---LITTVRGVGYKFE 223 >gi|295425495|ref|ZP_06818188.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064834|gb|EFG55749.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 242 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 115/238 (48%), Gaps = 17/238 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 +IL++EDD ++A +E+ K E + V G +E+ K + E+D I LDL L G Sbjct: 4 KILMVEDDTSVAEMMEMFFKKEGWQQDVAVDGVQAVEMFKEHASEYDLITLDLNLPKKDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R + P+ +L+ S D+V GL GADDY+SKPF+ L+ARI+A+ RR Sbjct: 64 IQVAKEVRQISPTVPIIMLTARGSEADQVLGLGVGADDYVSKPFSPISLIARIKALHRRV 123 Query: 120 RGHAQSLIVTGDLSVNLD------------AKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 + N + V G + LT KE+ ++ ++ + Sbjct: 124 MMDEPTNNAVNKQVNNDYDIQTQHLKISKSRREVLFDGKSVTTLTPKEFDLLFTMAQKPK 183 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL G I+TVWG GY ++ Sbjct: 184 QVFSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKV--GPQVIQTVWGVGYKFDDS 239 >gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 224 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +AH ++L L F V G G+ + D +ILDLGL D+ G E Sbjct: 3 RILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGLPDLDGGE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +RV P+ +L+ S+E KV L GADDYI KPF+ EL+ARI+ +R Sbjct: 63 VARRIRV-GAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLR--HR 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G+L V+L + V G + L+ KE++++ LL R ++ HL+ Sbjct: 120 EGGEQVTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + ++DV + LR KL + Y+ TV G GY LR+ K+ Sbjct: 180 SLERDSNVVDVHVANLRSKLRESGAY-GYLRTVRGVGYALRQRDKE 224 >gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] Length = 232 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + + +LD+ L D+ G Sbjct: 4 KILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDMSGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + EDK+ G SGADDYI KPF+ +EL+ R+ A++RR + Sbjct: 64 EVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRVK 123 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + IV+ ++LD + + G I LT E+ +++ L + +L+++ L Sbjct: 124 KEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQILT 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 184 EVWGNNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 231 >gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A IE+ L S+ + V+ + G+E+ E ++LD+ + + G Sbjct: 4 INILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIMMPGMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCKKIR-ENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122 Query: 121 GHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I +++N D V V I LT E+ ++ LL+ + Sbjct: 123 QLNPNSASKEKANNEITIKGMTINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 222 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V V+ G +E D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R TPV IL+ D V GL +GADDY++KPF EL+AR+RA++RR + Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGQSE 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ D++ + +HLT KE+ ++ +L +T+E + ++D Sbjct: 124 TPVVQGV---RIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LR+KL + A YI TV G G+ + Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGFRFERD 222 >gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8] gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8] gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MEVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 RMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2] gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ L E + + D G DG+ ++D IILD+ L + G++ Sbjct: 3 RILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 123 QTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNI 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV + +LR K+ + I TV G GY+L Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDD-YEPKLIHTVRGAGYILE 222 >gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440] Length = 252 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E + V G + + ++ DA++LD+ L D+ GF Sbjct: 27 RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFA 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV L+ ++ED+V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 87 VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 146 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDLS++ D+ V G I+LT E++++ L L+K L+ Sbjct: 147 AVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 206 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ G I T+ G GYVL+ Sbjct: 207 VWNYDFGGQANVVELYISYLRKKI--DVGRAPMIHTLRGAGYVLKP 250 >gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88] gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88] Length = 222 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 134/223 (60%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L SI L+ + V + + G++ E+C ++D +ILD+ L + GF Sbjct: 1 MKLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R + + +L+ S +ED+V GL GA+DY+ KPF+ EEL ARIR+++RR Sbjct: 61 SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++IV G + + +++TV++ LT KE ++E L L K+ +++E L+H++ Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V + LR+KL + AG N I+ V G GY++ E Sbjct: 181 DSVDFLSNTVRVHMSTLRRKLKDKAGC-NIIKNVIGEGYIIDE 222 >gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673] gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673] Length = 235 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN +VY GE+ + +FD ILD+ L DI G Sbjct: 4 KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R + + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + L++N+ + G + LT E+ ++ +L RK + ++ E Sbjct: 124 YNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAEE 183 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+ + YI+TVWG GY + E Sbjct: 184 LFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234 >gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596] gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596] Length = 231 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y+ G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL +A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230 >gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++A L+ + F + G +G+ +FD I+LDL L I G+E Sbjct: 4 KILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ DK+RGL GADDYISKPF+ ELVAR++A + + Sbjct: 64 ICRKIRGKTEV-PILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G + +N V + H + KEY+++ L + +KE Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++K + V I +LR+K+ YI+TVWG GY + Sbjct: 183 ERIWGMDAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGYHFK 229 >gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 240 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I+D+K L + + E F+V V GE+ + + + FD IILDL L I G Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + + + DK+ GL+ GADDY++KPFN EL+AR+R ++RR Sbjct: 77 TLCNRIRQQSDVFIIML-TAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL V++ ++TV I+LT KE+ ++ LL K +E + Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + IDV + LR+KL + IET WG GY R++ Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +++E + G++ + + + +ILD+ + + G Sbjct: 1 MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ILS + DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 IEVVKEVRKDSQI-PIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + G L++N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227 >gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRILL+EDD + ++ L+ V G DG+ + FD ++LD L + G Sbjct: 1 MRILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPGGVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 ++ LR TPV LS + ++++V+GL++G DDY+ KPF EL+AR+ A R Sbjct: 61 VRLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRP 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL ++L ++TV G +I + +E++++E L +T+ M L + Sbjct: 121 AVDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +P+ +IDV + +LR+KL + K I TV GY++R Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKL-DKGQDKPLIHTVRNAGYMIRAE 225 >gi|264677272|ref|YP_003277178.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262207784|gb|ACY31882.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 223 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ L + L V GE L + FDA +LDLGL G Sbjct: 1 MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R S PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA +L G ++++ V V+G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKKL IETV G GY L + E Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLP-----PGSIETVRGLGYRLAAPSNQE 223 >gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium LMG 3301] gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV +LS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 61 SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ + TV G GY+L+ ++ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDVP-LLHTVRGAGYMLKAGKSKQST 230 >gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] Length = 228 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD AL+ I ++L SE+F G E+ + + D I+LDL L + G + Sbjct: 4 RILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLMLPGMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S D VRGL++GADDY+ KPF ELVAR++A +R Sbjct: 64 VCQQIRAESDV-PVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMDR 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GD+ +++ TV G I LT E+ ++ L+ + +++ L ++ Sbjct: 123 GVTQEITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++++V + +LR K+ + TV G GY Sbjct: 183 PHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGYK 221 >gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1] gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1] Length = 223 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TP+ L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 226 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A TPV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTA-HQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 SVFTRLSINGLD-MDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E +DV I +LR K+ + K I TV G GY L+ A Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLITTVRGMGYRLQAEA 222 >gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 240 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E LK ++F V + E + + ++LDL L G Sbjct: 7 KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY++KPFN EL+ARIRA++RR Sbjct: 67 ICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQAK 126 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +++ G ++NL + + G+ I LT E+ +++ L L+++ Sbjct: 127 HIPGAPSNSETVVSFGRFTLNLATREMTDDGNPISLTSGEFAVLKSLVEHARQPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEADPAHPRYIQTVWGVGYVFVPDGGE 239 >gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + F V + G++G++L ++ II+DL L + G+E Sbjct: 4 RILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQLPGMNGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + +R P+ I+S + DK+R GADDYI+KPF+ ELVAR +A + R Sbjct: 64 LCSHIR-KNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYVR 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S I L ++ A+ V V+ + T +E+ ++E L+ N K Sbjct: 123 LLGKQSPSPSSEIHIRGLVIDKTARRVFVRNQEVAFTTREFNLLEFLASHPNRVFNKHEL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V + KLR+K+ YIETVWG GY Sbjct: 183 FERIWGMDSSGDIATVTVHVRKLREKMELDPSNPQYIETVWGAGYRF 229 >gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 224 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 224 >gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + + LM++ F+V + GE + L + D IILD+ + + GFEV Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A+R + P+ +L+ DKV+G SGADDY+ KPF EL AR++A+++R R Sbjct: 64 SEAVR-SFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ L+ G ++++ ++TV G + L +E++++ L+ N T ++E + ++ Sbjct: 123 AEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIWGF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ I TV G GY Sbjct: 183 DYEGDERTVDVHIKRLRERFPEK-DYPFAIHTVRGLGYRFV 222 >gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 115/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +DD + ++ L++E + V GE+ L + ++D+ + + G+ Sbjct: 2 IHILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVMMPNKDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R PV +L+ + DK RG G DDY++KPF EL+ RI+A++RR + Sbjct: 62 QLCEEIR-RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I + +++ + V+ G + L KE++++ L+ + T ++E + ++ Sbjct: 121 MVSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + +DV I +LR++ ++ G I T+ G GY L K Sbjct: 181 TDFDGDDRTVDVHIKRLRERFADRRGDFR-IRTIRGVGYKLEAAPK 225 >gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A +EL L E + V V G G E D IILDL L ++ G E Sbjct: 4 RILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI--VRRS 119 V R +R P+ +L+ + DKV GL SGADDY++K F EEL+ARIR I + Sbjct: 64 VCRRVRKESDV-PIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++I G L + D V +G I L+ KE+++++ L K L++E L+H++ Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + DV+I LR K+ +I TV G GY+ +++ + Sbjct: 183 GYDYYGDTNVTDVYIKYLRNKIDQKFDV-RFIHTVRGVGYIFKQDEE 228 >gi|293603700|ref|ZP_06686119.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292817874|gb|EFF76936.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 234 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 5 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++RALR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 65 RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 125 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D + + +IDV I +LR K+ + A I TV G GY L +A D+ Sbjct: 185 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTL--DAPDDAP 232 >gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] Length = 239 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+K + +I++ ++E + V+ + G++ + + E I++D+ + + G + Sbjct: 11 ILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVMMPVMDGIQT 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R LR PV +L+ S DKV GL GADDY++KPFN EL+AR ++ +RR Sbjct: 71 VRKLR-EDSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRRYVRF 129 Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 L ++ +AK V+V G ++ LT KE++++++L L K + E Sbjct: 130 GGQAGKPADKVLTLDGLVLDDNAKEVQVDGEKVDLTPKEFEILKMLMLEKGRVFSPETIY 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + V I LR+K+ +I+ VWG+GY Sbjct: 190 RKVWGEEPYGSESTVAVHIRHLREKIEINPSEPRFIKVVWGQGYK 234 >gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] Length = 232 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E+ LK++N+ V+ G + +E + E D ILD+ L DI GF Sbjct: 4 KILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVMLPDIDGFR 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R PV +L+ DK+ GL GADDYI+KPFN E++AR++ +RR + Sbjct: 64 ICQKIR-ENYYFPVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRRYQK 122 Query: 122 HAQSLIVTGDLS---------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +N D + G I LT E+ ++ L + ++ E Sbjct: 123 YNNPTKKQFFPKSEYDIRGLIINKDTHKCFLFGKEISLTPIEFSILWYLCEHQGKVVSTE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + I +LR+KL+ A +I+TVWG GY + Sbjct: 183 ELFENIWKEKYLDNNNTVMAHIGRLREKLNEPAKNPKFIKTVWGVGYEIE 232 >gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 248 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S P L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 83 QVLRALRTAHQS-PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 243 >gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++A + L+ NF V + G+ G+E K ++ IILDL L +I GFE Sbjct: 3 KILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-KIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S D + N ++ V V G T KE+ ++ L+ + +KE Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ E+ + V I K+R+K+ YIETVWG GY R Sbjct: 182 FDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRFR 229 >gi|298248618|ref|ZP_06972423.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551277|gb|EFH85143.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + ++ L E V G+ G+ + + AIILD+ L G Sbjct: 1 MRILIVEDNHQLNYELKQSLTYEGHAVDTAYDGDAGLAFAESAPYAAIILDVLLPVKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ +I+D+VRGL SGADDY+ KPF EL+AR+RA++RR+ Sbjct: 61 EVCRTLRARGYTVPILLLTARDAIDDRVRGLDSGADDYLVKPFALSELLARLRALLRRTS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL++ L V G +I LT + ++E L N L+ +M NH++ Sbjct: 121 PQKTPVLCVGDLTIELATHRVTRGGQQIELTTMLFTLLEYLMRHPNHILSHDMIANHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 I+V+I +LR+K+ + +ETV G GY LR + Sbjct: 181 YDTPGTPNAIEVYIRRLRRKI-DDPFEIKLVETVRGAGYRLRTPNE 225 >gi|294507174|ref|YP_003571232.1| phosphate regulon transcriptional regulatory protein phoB [Salinibacter ruber M8] gi|294343502|emb|CBH24280.1| Phosphate regulon transcriptional regulatory protein phoB [Salinibacter ruber M8] Length = 253 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 5/239 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 R+L+ EDD L S+E + V+ GED + E+ +D ++LD+ L GF Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHAMEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 EVLR R + + +PV +L+ E K+RG GADDY++KPF+ + L AR+ A + Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKVLAARVEAVLSRSQ 133 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++SV+ +TV I LT E+ ++ + T+++E L Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPIGLTDLEFDILTYFIEHRGRTVSREQLLRD 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYLET 235 ++ + + ID + LRKK+ Y++TV+G GY ++ D + +T Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDDPAYLQTVYGIGYKFVTDDVPDPSPSASQT 252 >gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + L F V+ + GE+ + + D ++LD+ L D GFEV Sbjct: 14 LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGFEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R TP+ L+ ++EDKVRGL G DDY++KPF+ EE++ARIRA++RRS+G Sbjct: 74 ARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSKGD 133 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A DL ++ + V G+ + L+ E++++ + L+K L+H++ Sbjct: 134 APPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHVWR 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++ ++ LR+K+ I+T+ G GYVLR + Sbjct: 194 YDFRGDDGIVESYVSYLRRKI--DNTEPRLIQTLRGIGYVLRTPS 236 >gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 224 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDDK+L +E+ LK + VY+ + GE IE+ + D +I D+ + + G+ Sbjct: 2 INILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFEDKHIDLVICDIMMPKVSGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR + P+ +++ +IEDK +G GADDY+ KP + +E++ RI A++RRSR Sbjct: 62 ELVKDLRNSNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALLRRSR 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ GD +N D T+ I L KE+ ++ L T+ + ++ Sbjct: 122 ISNEHKLIIGDAVLNYDTLTITKGEQIIELAKKEFYLLFKLLSYPKQIFTRNQLMEEIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + + +DV I ++R+KLS+ + I TV G GY Sbjct: 182 VDIESDERTVDVHIKRIREKLSD--FNEFKIVTVRGLGYK 219 >gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262] gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL +A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 256 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ L+ + L E F V V + G G E +E+D I+LD+ L + GF+ Sbjct: 17 RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR I+TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR G Sbjct: 77 ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 HA + T G L + + V + G I+L KE++++ L+ + LT++ Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +N ++ + +DV + LRKKL +I+++ G GY L N Sbjct: 197 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLELDPESA-HIDSIRGVGYKLVVN 247 >gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ A + ++E + V G+ + D I+LD L + G E Sbjct: 7 HILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWMLPGVSGIE 66 Query: 62 VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R + R + PV +LS S DKVRGL++GADDY++KP++ EL+AR RA R Sbjct: 67 ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRRT 126 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ D++++ + V G+ + L E++++ L R ++E L+ + Sbjct: 127 RPATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRVWSREQLLDRV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK L G + + TV G GY L Sbjct: 187 WGRDIYVDSRTVDVHVGRLRKALMIHGGT-DPLRTVRGAGYAL 228 >gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L F V + + G DG+ + + ++D IILD+ L + G+ Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++++R TPV L+ + + D+VRG + GADDY+ KPF EL+ARIR +R+S Sbjct: 61 TVIKSIRSK-SETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + V RI LT +E+ M+ LL R+ L++ + ++D Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV I +LR K+ + + I TV G GYVL Sbjct: 180 VNFDTDTNVVDVAIRRLRSKV-DDPFDQKLIHTVRGMGYVLDPE 222 >gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L+++ F+V GE+ + + D I+LD + ++ G EV Sbjct: 8 VLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA +RR+R Sbjct: 68 CRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTR 127 Query: 121 GHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PATVGERLEYLDIVLDAETHRVTRCEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L G + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALCQHGGD-DPLRTVRGAGYAL 228 >gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL LK+EN+ V+ ++ +E + D ILD+ L G Sbjct: 4 KILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGASGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ +N++ + ++ LT E+ ++ +L K ++ E Sbjct: 123 YNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO 3283-12] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MR+LL+EDD+ + + + L V + G++G+ L +FD IILD L + G Sbjct: 1 MRVLLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPGGVEG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ LR +TPV +LS ++ +++KV GL++G DDY++KPF+ EL AR+ A+VRR+ Sbjct: 61 LHILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R AQ GDL ++L ++ V+ G +I L +E++++E L +T+ M L Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P+ +IDV I +LR+K+ + + T+ GY+L+E Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKI-DRPFHHPLVHTIRNAGYMLQE 225 >gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 236 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V + GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 ++L+++D+ + ++ L N++V + GE +++ + + IILD+ + + G+ Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R P+ +L+ S +D++ G + G D+YISKPF+ + LVAR+ AIVRRS Sbjct: 65 QVCKEIR-KYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + ++ A V++ I L+ KE++++ + L++E LN++++ Sbjct: 124 QTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ + +YI+T+WG GY Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGDKG---DYIKTIWGMGYKFE 222 >gi|329923173|ref|ZP_08278661.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] gi|328941559|gb|EGG37847.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] Length = 228 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED + ++ L+ E F V G++ + + + D ++LD L + G + Sbjct: 4 KLLIVEDAPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S DK+ GL+ GADDY++KPF+ EL +RIRA++RR RG Sbjct: 64 VCREIRQTSHCGIIMV-TARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I +L ++ V G + LT E++++ L+ R ++ L Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +D I LR+KL + YI+TV+G GY E Sbjct: 183 EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRFGE 226 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E + G D + + D +ILD+ + + G E Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L LR PV L+ ++ D+V GL++GADDY++KPF+ +E+ AR++A++RRS Sbjct: 70 TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSGR 129 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ DL++N+++ V G I LT E++++ L L+K+ L+ + Sbjct: 130 AQQTRSTVLTVADLTLNVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDAV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +V +++++I LRKK+ +G I TV G GY++RE Sbjct: 190 WSYDFGGQVNVVELYISYLRKKI--DSGRPALIRTVRGAGYIMREP 233 >gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603] gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621] gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621] gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603] gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+ED+ +A I+ L+ + V+ + G + +EL + D ++LD+ L + G Sbjct: 1 MKSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPERNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+L+ +R K S PV I++ + + K++GL GADDYI+KPF +E+VAR+ A++RRS Sbjct: 61 WEILQYIR-EKSSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRS 119 Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q + G L +N + V + G + ++ ++ L+ N T T+E + Sbjct: 120 VILVKDQETRLFGSLKINFQSHHVTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ I ++RK L N + I+T G GY Sbjct: 180 VWGMDYGGSDRAVDLAIKRVRKTLENWPVQEGEIKTQRGVGYQF 223 >gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 232 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 126/233 (54%), Gaps = 4/233 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + V + G DG+ L E+ +ILD+ L + G+ Sbjct: 1 MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL LR A PV L+ SSI D+V+GL+ GADDY++KPF EL+AR+R + R Sbjct: 61 NVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 IV DL V+ + VE G RI L+ KEY ++ELL+ R+ L + + + ++ Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 D + + +IDV I +LR K+ + I TV G GYVL A D+ + Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-DAKLIVTVRGMGYVLE--APDDGAVH 230 >gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 248 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 83 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PAFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 243 >gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20] gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21] gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655] gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII] gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021] gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG] gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae Rd KW20] gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21] gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655] gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII] gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21] gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG] gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory component QseB [Haemophilus influenzae R2866] Length = 221 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D++ + ++ L E + V T DG+++ K + D ++LD L + G E Sbjct: 3 RILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQDKPDLVLLDWMLPKMSGIE 62 Query: 62 VLRALRVAKISTPV--CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R + + +L+ + EDK+ GL GADDY++KPF+ +EL AR++ I++R Sbjct: 63 LLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILKRY 122 Query: 120 RGHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + GDL + LD V ++ I LT KEY +++LL K ++ Sbjct: 123 NKQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRVIS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ E + +DV I LRKKL +N+I+T+ G GY ++ Sbjct: 183 REYILEKIWGYDYFGETRTVDVHIRYLRKKLGED---ENFIDTIRGLGYKIK 231 >gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 252 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + +++++ L E++ +Y G + +E+ D ++LD+ + + G E Sbjct: 19 KILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEHIDLVLLDVMMPVMDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ +L+ DK+ GL GADDYI+KPFN E++AR+++ +RR Sbjct: 79 AMMHIR-KTTTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRRYTQ 137 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q ++ G L +N + K+V + G ++ T E+ +++ L N + + Sbjct: 138 FNQGYVETSHILKVGGLELNDETKSVSMDGKQVRCTPTEFDILKFLMEHPNRVFSPKHIY 197 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 H++ + V I LR+KL Y + VWG+GY + K E+ Sbjct: 198 EHVWKDHSYGAEGTVAVHIRHLREKLEINPSEPRYFKVVWGQGYKIEGELKHES 251 >gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM 15897] gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +I+L++D+ + ++ L E + N+ D G I CK D I+LD+ L DI G+ Sbjct: 5 KIMLVDDEPDILDLLDKALTIEGYCNITKIDNGLSAINTCKEINPDIIVLDVMLPDIDGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ LS + DK+ GL G DDY++KPF+ +E+ R++A +RR+ Sbjct: 65 EVCKKIR-EISHCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQLRRAE 123 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G+L ++ D V I LT +E+++++ L+ +++E Sbjct: 124 YKYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRERLYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ I V I LR+KL + YI T+ G GY L + Sbjct: 184 TVWGEDSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKLVNPNE 233 >gi|153952701|ref|YP_001393466.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853372|ref|YP_002470494.1| hypothetical protein CKR_0029 [Clostridium kluyveri NBRC 12016] gi|146345582|gb|EDK32118.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567096|dbj|BAH05080.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++A + L+ E F V + G G+ +FD +ILD+ L I G+ Sbjct: 3 KILIIEDDLSIAELQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIMLPKINGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR K PV ++S DK++G GADDYI+KPF+ ELVAR+++ ++ Sbjct: 63 ILR-SIQDKKDIPVLLVSAKKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQNYER 121 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + D++ V V G I L KE+ ++ ++ N +E Sbjct: 122 IKSKFNLKHNKLIIRGLEILKDSRQVFVNGKEITLAQKEFDILLYMAENPNRVFNREELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ YIETVWG GY LR Sbjct: 182 EKIWGLGSMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRLR 228 >gi|284044693|ref|YP_003395033.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948914|gb|ADB51658.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A ++ L+ E ++V G ++ + D +ILDLGL + G + Sbjct: 9 RVLVVEDDDEIAQVLQRSLRMEGYDVRTAGDGVSALDEAHSFLPDLVILDLGLPKLDGID 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ ++E +V GL +GADDY+ KPF ++EL+AR+RA++RR Sbjct: 69 VARTLR-RGDDVPILMLTARDALESRVEGLDAGADDYLVKPFERQELLARLRALLRRRPP 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V GDL +N D V I LT +E++++E L + ++++ L+ ++ Sbjct: 128 RGSAPLVVGDLRLNPDTHEVHRGERSIELTQREFELLEYLMRNERIVISRQRLLDEVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+VF+ LR+KL G + T+ G GYVLR Sbjct: 188 DPFSTTNTIEVFVSNLRRKLEAD-GEPRLLHTIRGAGYVLR 227 >gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 SNDAASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224 >gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 224 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 92/224 (41%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD AL + LK++N+ V GE+ + L + YEFD I DLGL DI G Sbjct: 1 MKLLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ +LR I PV IL+ +DKV GL +GADDY+ KPF EEL+ARI A++RR+ Sbjct: 61 DVITSLRDEDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A+ IV G +S+N + V+V G + LT EY+++E L L + ++K HLY Sbjct: 121 GYAKPEIVKGPISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++VF+ +LRKK+ I+T+ GRGY LR + Sbjct: 181 QDYDRDSNVLEVFVGRLRKKIDPDGTI-QPIDTLRGRGYRLRAD 223 >gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ +A + L ++ + V G +G+E K +D +I+D+ L + G+ Sbjct: 4 RLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMDGYS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R P+ I+S + DK++GL+ GADDY++KPF+ E+ ARI +++RR + Sbjct: 64 LCQSIRW-VSDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G LS+N + K + ++LT E+ ++ +L+ TK+ Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ D I V I +LR KL + +IET WG GY Sbjct: 183 EHIWHEEDIESSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGYRF 228 >gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM 16841] gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + IE+ LKS+ ++VY G +G+++ + I+D+ + + G + Sbjct: 11 ILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEPIHLAIVDIMMPRMDGVTM 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV +LS S DKV GL GADDY++KPF EL+AR+ + +RR Sbjct: 71 TIKLR-EHHEFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTRF 129 Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 V G L +N D V G+ + LT E++++ LL + E Sbjct: 130 MGMAQKKEEEGRNYVIGGLELNEDTIEFSVDGNPVKLTPIEFKILALLMRNPGRVFSTEE 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ I V + +R K+ Y++ VWG GY + + Sbjct: 190 IYERVWN-EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKIEKQ 239 >gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 248 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 83 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 243 >gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7] gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7] Length = 233 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 114/229 (49%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + ++L SE ++V G++ I++ + D ILD+ + I G++ Sbjct: 5 KILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV-SDDIDLYILDIMMPIINGYQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ L+ DK G SG DDY+SKPF+ EL R++A++RR Sbjct: 64 ACVEIRKKSNA-PILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRRYYV 122 Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + ++++N +++ V + G +I LT EYQ++ LL + + + Sbjct: 123 YQGKMEKEENNDDNIVYNNITINPNSEAVYLNGEQIELTYLEYQILYLLLSNRKRIFSTQ 182 Query: 173 MFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ I V I LRKK+ + I+T+WG+GY Sbjct: 183 TLYESIWNEPYYYSANNTIMVHIRNLRKKIESDPQNPKIIKTIWGKGYR 231 >gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224 >gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TP+ L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 220 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 ED+++ + + +L E F+V V D G D + D ++LDL L PG EV R L Sbjct: 2 EDEESFSDPLSYLLGKEGFDVEVVDNGSDALVEFDRNGADLVLLDLQLPGTPGTEVCRQL 61 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH---A 123 R + S PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 62 R-QRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEPEELI 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 S + G + ++++ V V G ++ L KE++++E+L LT+ ++ ++ Sbjct: 121 TSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWGSDY 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 VGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFEP 220 >gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens AM1] gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens DM4] gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens AM1] gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens DM4] Length = 232 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHP-MIHTVRGAGYVIRADEP 229 >gi|184154873|ref|YP_001843213.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260663097|ref|ZP_05863989.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183226217|dbj|BAG26733.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260552289|gb|EEX25340.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 240 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 15/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIP 58 M+IL+IED++++ + + K E ++ GE+ +E D ++LDL L Sbjct: 1 MKILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R + P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 120 Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 + ++ I T +N + + G+ I +LT KE+ +++ L+ + Sbjct: 121 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 T+E L ++D + + +D I KLR+K+ G I+TVWG GY ++ D Sbjct: 181 VFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSEAD 238 Query: 228 E 228 + Sbjct: 239 D 239 >gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L + F V GE +++ + I+LD+ + + GF Sbjct: 5 KILVVDDEARMRKLVKDFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPKLDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L LR PV +L+ S D++ G + G D+YI+KPF+ + LVAR+ A++RR+ Sbjct: 65 ETLEVLR-QYSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ +V G + ++ A++V + + L+ KEY+++ K L++E L+ +++ Sbjct: 124 GESEEKLVAGAIEIDKVARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSSVWN 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + KLR K+ +YI+TVWG GY Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGERG---DYIKTVWGMGYKFE 222 >gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium variabile DSM 44702] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+++ ++ L ++V GE+ L D +I+D L + G Sbjct: 1 MKILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGILPKVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR+LR + V +LS S + D+V GL +GADDY++KPF EEL+AR+R++ RRSR Sbjct: 61 EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ ++N + + V RI LT E+ ++ELL L++ Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ ++V+I LR+K + A G I TV G GYVLREN Sbjct: 181 LEEVWGYDFPTSGNALEVYIGYLRRK-TEAEGEDRLIHTVRGVGYVLREN 229 >gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ L + L+SE + V G++ + D +ILD L + G E+ Sbjct: 5 ILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLPGLSGIEL 64 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R P+ +L+ ++VRGL +GADDY+ KPF+ ELVAR+RA+ R Sbjct: 65 CRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLRRAK 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H +L+ GD+ ++ + K V G +HL E++++E L ++E L+ ++ Sbjct: 125 PEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLDGVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV + +LRK L+ + I TV G GY E Sbjct: 185 GQDVYIDERTVDVHVGRLRKALNR-PRQPDPIRTVRGSGYSFNE 227 >gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 272 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ++++ED++AL ++ L E + V GE+ L + D I+LD L + Sbjct: 42 MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLPGLS 101 Query: 59 GFEVLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G E+ R R + P+ +++ D++RGL GADDY++KPF+ EL+ARIRA++ Sbjct: 102 GIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVM 161 Query: 117 RRSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR R + GD+ ++ A V +HL EY++++ L ++E L Sbjct: 162 RRIRPALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLL 221 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ E + +DV + +LRK L N G K+ I TV GY L E Sbjct: 222 DTVWGSDVYVEARTVDVHVGRLRKAL-NDKGEKDPIRTVRSAGYSLDEQ 269 >gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ +A I L+ + V G + + + D IILDL L I G + Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLMLPGIGGMD 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + ++ K S P+ +++ S + V GL+ GADDY+ KPF+ EL+AR+R+++RR + Sbjct: 71 LCKKIK-EKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRIKD 129 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G++ +NL A + + LT EY+++ L T++ L+ Sbjct: 130 EEEDEFEGNITIGNIFLNLKAHKAFINNSEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV I +LR KL + K +ET+ G GY E Sbjct: 190 VWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 232 >gi|269794678|ref|YP_003314133.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096863|gb|ACZ21299.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 235 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 113/227 (49%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDD+ A L E + V G +E + D ++LD+ L ++ GF V Sbjct: 4 ILIAEDDELQAELARRYLTREGYQATVVGDGRSALEAVRGSAVDLLVLDVMLPEMDGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RALR A TP+ +L+ S +D + GL+ GADDY+SKP++ E+VAR RA++RRSR Sbjct: 64 CRALRAAGDETPILMLTARSEEDDLLVGLELGADDYLSKPYSPREMVARARALLRRSRTV 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L V+ V G I LT E Q++ LL+ L++ L HL+ Sbjct: 124 DDGPVTVGPLVVDPRRHEASVGGTPIDLTRAEMQLLTLLAEHAGLVLSRPQLLRHLHGSD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + ID + LR K+ G + TV+G GY L E Sbjct: 184 EYTTERTIDTHMKNLRSKVDAVFDGPELLRTVYGVGYKLVAPTATEP 230 >gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268] gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A +E+ L S+ + V+ E+G+++ E ++LD+ + + G Sbjct: 4 INILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+ R +R + PV +LS S DK+ GL GADDY++KPFN EL AR+++ +RR Sbjct: 64 EMCRKIR-ESSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYT 122 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + I ++ +N D V + I LT E+ ++ LL+ + + Sbjct: 123 QLNPNAGPNYVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTD 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 EIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIEK 233 >gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17] gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17] Length = 230 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + A + L + V G DG+ L FD II D L + G Sbjct: 4 KILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPRLDGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ A+R A ISTPV ILS +++++D+V GL++GADDY+ KPF+ EL ARI A+VRRS Sbjct: 64 MVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSDR 123 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + GDL ++L A+TV G I + +E+ ++E L+ +T+ M L Sbjct: 124 AASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLEK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +P ++DV I +LR+KL G + TV G GY L Sbjct: 184 IWNYHFDPGSNVVDVHIGRLRRKLEEGFGTP-ILHTVRGAGYRL 226 >gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 223 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A ++ LK ++V GE G+ + +D +++D + + G Sbjct: 1 MRILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR TPV LS + + D+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 TVVETLRREGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G+L +NL +TV QG I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P+ +IDV I +LR K+ + + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLDP 223 >gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria monocytogenes L99] Length = 237 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 11 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 71 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 130 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 131 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 191 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 236 >gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3] gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3] Length = 231 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ +A +EL LK+EN+ V+ ++ +E E D ILD+ L D G Sbjct: 4 KVLVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDASGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVMAQNKNVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 REIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGIGYKIEK 231 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ I D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEKNTYI-MMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + ++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 224 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIPGF 60 IL++EDDK ++ IEL L F G + I++ D ++LD+ L G+ Sbjct: 4 ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVF-NNTPDIGLVLLDIMLPQFNGY 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV L+ D V GL GADDYI+KPF +EL+ARI+A +R+ Sbjct: 63 EVLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKKA 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V DLS++LD V G I L+ E+ ++ L L ++E L+ ++ Sbjct: 123 AVSPRNRVAFEDLSIDLDTFMVSRGGESIELSKTEFDLLHYLVLNHGLVQSREQILDQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+DV+I LR K+ + K I+TV GRGYV++ Sbjct: 183 GFDYFGNDNIVDVYIKYLRDKI-DKPFEKKLIQTVRGRGYVIK 224 >gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 221 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 2/216 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++DD +LA + ++L++E V G+ + + + D ++LDL L + G V Sbjct: 2 LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R A S P+ +L+ S D V GL +GADDY++KPF ELVARI+A +RR+ Sbjct: 62 RQIR-ATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQLG 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + L+ GD+ ++ TV +G + LT E+ ++ L T+E+ L ++ Sbjct: 121 EPLVF-GDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWGYHH 179 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K+++V + +LR K+ + A + I TV G GY Sbjct: 180 PGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGY 215 >gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] Length = 236 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC 15579] gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC 15579] Length = 234 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ LK+E V+ G D + L + + II+D+ + + G + Sbjct: 9 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 69 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 127 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K V V I LT EY+++ELL K + E Sbjct: 128 LGNYKETEDKVVAGSLILDKKRKIVSVDEKEIRLTPIEYKILELLIENKGRVFSIEEIYE 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ Y++ VWG GY ++E Sbjct: 188 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 234 >gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ +L S++ ML+ E F V GE+ + L + FD I+LD+ L ++ GF Sbjct: 1 MKLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L+ LR ++ TPV ++ S+ED+V GL+ G DDYI KPF EL ARIRA R Sbjct: 60 SILKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + K ++V G + LT +Y+++E L LT+E + ++ Sbjct: 120 NMTIDHTLRYRGIELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++V+I LRKKL K+ I+ V G GY+L+E K Sbjct: 180 GFESDTTIAIVEVYIHHLRKKLEPFGYHKD-IQNVRGIGYLLKEPDK 225 >gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ L + + L+ E ++V G D ++ + + DA++LD+ + D+ G Sbjct: 19 RVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAARDFAPDAMVLDIMMPDLDGMA 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ LR + PV L+ ++ D+V GL +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 79 VLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRAGT 138 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ ++ GDLS+N D+ V GH I LT E++++ L + ++K L+ Sbjct: 139 ALTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQILDR 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +++++I LRKK+ AG I TV G GY+++ Sbjct: 199 VWNYDFGGRSSVVELYISYLRKKI--DAGHDPLIHTVRGVGYMIKAP 243 >gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 234 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL+ + L +E ++V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++V GD+ ++ + + V G I L EY+++E ++E L+ + Sbjct: 124 SPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGEEQDPIRTVRGAGYALDD 227 >gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 239 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 130/237 (54%), Gaps = 5/237 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L++ + V G + EFD +ILDLGL + GF Sbjct: 1 MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+EDKVRGL GADDY++KPF +EL AR+RA+ RR Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L ++ + V + GH + L+ +E ++E+L R ++K+ + HL Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDETCEYLET 235 +E I+V++ +LRKK+ G I TV G GY L + + E Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIEV---GPVRIATVRGLGYCLEKIVPVAATSAESAAP 234 >gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 225 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A +I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHISTVIRVGYKFEE 225 >gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 223 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M L+++DD +A ++ L S+ + V V G DG+ D I+LD+ L G+ Sbjct: 1 MHALVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIMLPGHNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR I TPV +L+ D+ L +GADDY+ KPF+ L A +RA++RR Sbjct: 61 VVVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL V+ TV I LT +E+ ++E L +T ++K + ++D Sbjct: 121 RERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I++V++ LRK++ + GK IETV G GY LR Sbjct: 181 ENFDGDANIVEVYVGYLRKRI-DTPFGKRSIETVRGAGYRLRSE 223 >gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 226 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L IE L+ E V T G + ++ K + +DA++LD+ + ++ G Sbjct: 1 MKVLVVEDESKLTSLIEKGLRCEGIEVESTSSGLEALDQVKRFSYDAVVLDIMIHELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A I TPV I++ +K+ GL +GADDY+ KPF +ELVAR+ A+ RRS Sbjct: 61 SVLKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ DL+VNL + V G +I + KE+ ++ L + ++++ Sbjct: 121 GQGLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +PE ++DV+I +LR+K+ + K +ETV G GY +R Sbjct: 181 FDFDPETNLVDVYIGRLRRKI-DQGDSKKLLETVRGVGYRIR 221 >gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4] gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V I + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEAIDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKVVRKDSRI-PILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G L +N D+ V G ++LT E+ ++ LL+ N + + Sbjct: 120 ENSVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIE 227 >gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 228 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+EL + D ++LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G + ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 STDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224 >gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium 1_7_47FAA] Length = 243 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL +DD + + ++L+SE + V + GE + FD IILD+ + GF Sbjct: 18 KILFADDDPEIREVVRILLESEGYQVVEAENGEQAASMADD-TFDLIILDVMMPGRNGFS 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ L+ + DK G +G DDY+SKPF+ EL AR++A++RR Sbjct: 77 ACAEIRRRLNT-PILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRRYHI 135 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + DL + V G I LT EY+++ LL+ + T E Sbjct: 136 YKGKEEDGEESIAVKDLVIQKSFNEVMKNGGEILLTDLEYRILLLLASNRGKLFTIENIY 195 Query: 176 NHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I LRKKL YI VWG+GY + Sbjct: 196 ESVWGEAYYYSANNTVMVHIRNLRKKLEADPKNPKYIVNVWGKGYRIE 243 >gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] Length = 236 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ L S+ L+ + + V GE+ E+ +D IILDL L + G Sbjct: 13 MRILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLPKLDGM 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R T V ILS ++DK+ GL SGA+DY+ KPF+ EEL AR+R++ RR Sbjct: 73 EVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRV 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+LS++ A+TV +G + LT KE ++E L L + +++E ++H++D Sbjct: 133 VQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVWD 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G + I V I LRKKL A G + I G+GY++ A Sbjct: 193 GSVDSFSNSIRVHISALRKKLRTALGY-DPITNRVGQGYMIGGEA 236 >gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 128/227 (56%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+ + ++L L+ +++ + + G + + D +ILDL L DI G Sbjct: 3 KILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVKQ-PDLVILDLMLPDIDGLS 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R P+ +++ ++ +DK+ GL GADDYI+KPFN E+VAR++A +RR + Sbjct: 62 ICKSIRKKYYY-PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +++ I L++N +K V + I LT E++++E+L +K L+ E N Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELFN 180 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I V + LR+K+ ++ YI+TVWG GY++ Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYIIE 227 >gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 243 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54 RILL+ED++ + L L+ + F V + G+ +E+ + D ++LDL L Sbjct: 9 RILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EV +R S PV +L+ + DK+ GL+ GADDY++KP++ EL+AR++A Sbjct: 69 PRLDGTEVCTRIR-RSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RRSR L G + ++++ V V G + + +E++++EL LT+ Sbjct: 128 VLRRSRDTGPELEPVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTR 187 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L+ + K +DV + +LR ++ A I TV G GY L Sbjct: 188 SQIIERLWGPEYGGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRL 237 >gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 248 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 83 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 243 >gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 219 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILRDWREQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLSE 218 >gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA 21] gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM 11079-80] gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM 11079-80] gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA 21] Length = 263 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 29 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 89 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 148 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G+ +NL + + + LT E+ +++ L L+++ Sbjct: 149 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 208 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 209 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 260 >gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] Length = 234 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+++L + L++E F V V G++ D ++LD + + G E Sbjct: 5 HILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R PV +L+ D+VRGL +GADDY+ KPF+ EL+AR+RA+ R Sbjct: 65 LCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H ++V GD+ ++ + + QG IHL E++++E L ++E L+ + Sbjct: 125 KPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LRK ++ + I TV G GY E Sbjct: 185 WGHDVYIDERTVDVHVGRLRKAINR-PRQSDPIRTVRGSGYSFDE 228 >gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] Length = 229 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + DG+ + I+LD + G + Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 ++ L+ PV +L+ EDKVRGL++GADDYI+KPF+ +EL AR+ A + R Sbjct: 64 FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRV 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +I L ++ + V + + + E++++ ++E LN++ Sbjct: 124 SPTSVDEVIEVQGLKLDPVSHRVSAEERALDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEE-TGHDRLIQTVRGAGYRF 225 >gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 226 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA IEL L E + V V G + + + D +ILD L + G E Sbjct: 3 HILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSS--IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R LR PV +L+ +V GL +GADDY+ KPF+ EEL+AR+RA +RR+ Sbjct: 63 ICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRRN 122 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I DLS+N + V I LT KE+ ++E L +T++ L + Sbjct: 123 QDADAGDILQFEDLSLNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + II+V+I LR KL K I+TV G GYVLRE Sbjct: 183 WDYDFIGDSNIIEVYIRYLRLKLETN-NEKRLIQTVRGVGYVLRE 226 >gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 224 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++E+++ LA +EL LK E ++V V G G + + D II++ L + G E Sbjct: 4 RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +++ +E++V GL +GADDYI KPFN +E ARIR +RR+ Sbjct: 64 LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ DL N + ++ I LT KE+++++ L LT+E L ++ Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL AAG I+TV G GYVLR+ Sbjct: 184 DFMGDSNIIEVYIRYLRLKLE-AAGEPRLIQTVRGVGYVLRD 224 >gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 246 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +LA + + L+ ++V V G ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL--VARIRAIVRR 118 EVL +R P L+ +++D++ GL +G DDY++KPF+ EE+ Sbjct: 82 EVLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V GDL++N+D + V G I LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + I++++I LRKK+ I T+ G GYV++ Sbjct: 202 WDYDFGGQANIVELYISYLRKKIEAN--HPPMIHTIRGAGYVIKP 244 >gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea psychrophila LSv54] gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 224 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD +A I+ L+ F V G +G+ + A I+D+ L + G Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ +R A TPV ILS S++D+++GLQ G DDY+ KPF+ EL+ R++A I R Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q+ + G L ++L + V G +I L KEY ++ ++ T L+K L +Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P+ ++DV +C+LR K+ + G+ I+T+ G GYVLR Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKI-DKGFGQQLIQTIRGVGYVLR 222 >gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 239 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 127/232 (54%), Gaps = 10/232 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+IED+ L+ + L E F V V + G G E +E+D I+LD+ L + GF++L Sbjct: 2 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQIL 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 LR + I+TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR GH Sbjct: 62 EKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHV 121 Query: 124 QSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L + + V + G I+L KE++++ L+ + LT++ Sbjct: 122 EEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 182 MNVVWGFDYIGGQRTVDVHVSSLRKKLELDP-ESVHIDSIRGVGYKLVVNPK 232 >gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20] gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ I +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKIVRKDSRV-PILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G L +N D+ V G ++LT E+ ++ LL+ N + + Sbjct: 120 DNAVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 231 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +E+ L ++ + V+ G D + + + +ILD+ + I G +V Sbjct: 4 VLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ++S DK++GL +GADDYI KPF+ EL+AR++A +RR Sbjct: 64 CMKIRKEYNI-PIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122 Query: 123 AQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + +++N V + G + LT EY+++ LL+ + E Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNSGKVFSAEDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + I +LR+KL + +ETVWG GY + Sbjct: 183 YKEIWAEKYFEGNNTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230 >gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 117/226 (51%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L+ +NF+V GE+ +++ + + +ILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV R +R P+ +L+ D++ G G D+YISKPF+ + LVAR+ AI R Sbjct: 65 EVCREIR-KNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTG 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G + ++ A V G + L+ KE++++ + L++E LN ++ Sbjct: 124 QDAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ID + KLR K+ + YI TVWG GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIRTVWGMGYKFEVDE 226 >gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC 49176] gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC 49176] Length = 257 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 +IL+++DDK +A +E+ L SE + V + G+ + K + ILD+ + + G Sbjct: 26 KILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDGL 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R PV +LS S+ DK+ GL +GADDY++KPFN EL AR++A +RR Sbjct: 86 SMVKKIR-ETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFT 144 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +I G L +N + V LT EY ++ LL+ + Sbjct: 145 EFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFS 204 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR+K+ A I+TVWG GY + + Sbjct: 205 TDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIEK 257 >gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 234 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ L + K E F VY+ G + ++ K D ++LD+ + I GFEV Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R R P+ LS D++ GL GADDY+ KPF+ EL+AR+++ +RR RG Sbjct: 66 CRRAR-QFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGE 124 Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++ + V + I LT E+ ++++L+ + ++ L Sbjct: 125 VLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKAM 184 Query: 180 DG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G E + ID I LRKKL YI TV+G GY + Sbjct: 185 GGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQ 228 >gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 229 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +++E + V G++ + K D ++LD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS ++ DK++GL +GADDY++KPFN E++ARI++++RRS Sbjct: 61 IQVVKEVRKELQL-PILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L + ++ V + G I LT E+ ++ LL+ N + + Sbjct: 120 NYATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ K + V + LR K+ A GG+ I+TVWG GY + + Sbjct: 180 FERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIGD 228 >gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 SSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224 >gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 226 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 226 >gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 249 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + G DG L + ++D +I+D L + G Sbjct: 19 MRLLIIEDDREAAAYLVKAFRETGHVADSAHDGLDGYALAREGDYDVLIVDRMLPKLDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR ++TP ILS + ++D+V+GL++G DDY+ KP+ EL+AR A+ RR Sbjct: 79 SLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALARRQA 138 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++ GDL ++ + V G I L +E++++E L +T+ M L H Sbjct: 139 GSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTMLLEH 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P+ +IDV + +LR KL I TV G GYVLR Sbjct: 199 VWDYHFDPQTNVIDVHVSRLRSKLDKGFPSP-IIHTVRGAGYVLR 242 >gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 225 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + + N+ G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGF 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G+L + L + V + G + L KE+Q+++ L N +++ + ++ Sbjct: 121 SQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRQ 223 >gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5] Length = 231 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L E ++V G + +++ + + ++LD+ + + G Sbjct: 4 ILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDVHLLVLDVMMPRLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R S P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 64 TLKIR-ENNSIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQL 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + G L++N D K V V G + LT EY ++ LL + + + Sbjct: 123 GGSVKEKSERVYEVGGLAINDDLKEVTVDGEVVKLTPIEYNILLLLMKNQGRVFSIDQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 ESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230 >gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 237 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + ++LDL L G ++ Sbjct: 11 ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLMLPGRDGIQI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 + +R P+ +L+ S D VRGL +GADDY+ KPF ELVAR+RA +R + Sbjct: 71 CQDIRRESGV-PIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAAQ 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL+++ A V++ G I LT EY ++ L+ N ++E L ++ Sbjct: 130 REEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 190 YTNSADTRLVNVHVQRLRSKVERNADHPQMIITVRGIGYRICTPGEE 236 >gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 222 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + + L+ E + V + G IE+ K ++ D I++D+ + + G E Sbjct: 4 KILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPLLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ + T + L+ + +V + GADDYI+KP L++RI+A R+ + Sbjct: 64 AGKIIKTEQPQTHLIYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQAYFRKEKS 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ L +N +V + + L KE++++ L+ N +++ L ++ Sbjct: 124 QEKNVLEISGLVINKQNYSVTTEDGSVKVLPKKEFEILYFLASHPNKVQSRDSLLQKIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IDV I K+R+K+ + YI T+ G GY+ Sbjct: 184 TDIYVVERTIDVHIRKVREKIGD-----KYIGTLKGVGYMFNAE 222 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+ F V G D + + + D I+LD+ L D+ GF+ Sbjct: 8 RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR TPV L+ + EDK+RGL +G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 68 VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTGA 127 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + D+ ++ ++ V +G + L+ E++++ L+K L+H Sbjct: 128 GDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILDH 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +V I++ ++ LR+K+ I T+ G GYVLR Sbjct: 188 VWDYDFRGDVGIVESYVSVLRRKI--DNADPRLIHTLRGVGYVLR 230 >gi|227832502|ref|YP_002834209.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183632|ref|ZP_06043053.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453518|gb|ACP32271.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 228 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++L++E + G + I + ++ D I+LDL L + G + Sbjct: 4 KILVVDDDPAIAEMLTIVLEAEGLEPIAVNDGNEAIPAFREHDPDLILLDLMLPGMNGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + RA+R P+ +L+ + D V GL+SGADDYI+KPF +EL+ARIRA +RR G Sbjct: 64 ICRAIRTESSV-PIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRIDG 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +++ TV +G I LT E+ ++ ++ + T+E L ++ Sbjct: 123 GTGEIIEVGDLLIDVPEHTVTRKGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + + TV G GY Sbjct: 183 YRHASDTRLVNVHVQRLRAKIEHDPEDPHIVLTVRGVGYK 222 >gi|227538367|ref|ZP_03968416.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241882|gb|EEI91897.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 238 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 3/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++EDD+ L + L+SEN+ V + G D ++ D ++LD L G V Sbjct: 11 IAVVEDDENLRFLVSHRLQSENYKVIQSGNGLDAEKMILDQRPDIVLLDWMLPGKEGNIV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R A + +++ S DK+ G DYI+KPFN + LVA I VR Sbjct: 71 CEDVRKAGFENIIIMMTAKSQDIDKIDAYSFGVTDYITKPFNMDVLVAMIENKVRFFVPK 130 Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G + + ++ G +I LT E +++ +T+E + ++ Sbjct: 131 SGAEVYHFGSTEHHPNVHSLVRDGKKIELTILENRILLHFLQNVGKEITREELMEVVWGY 190 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + +D+ + +LRKK+ +Y++TV G GY + +DE+ Sbjct: 191 SSNVNTRTLDMHVVRLRKKIEKNPDKPHYLQTVRGLGYKFID--EDES 236 >gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] Length = 276 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 51 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 110 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 171 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 230 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 231 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPPE 276 >gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 4/229 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL+ +DD + + +L+ E F GE+ + + + I+D+ + + Sbjct: 1 MRTTILIADDDSNIRELLRFILQREGFRALEAADGEEASRVMRQEDVALAIVDVMMPEKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + +R PV +L+ ++DK RG +SG DDY+ KPF +EL+ R+RA++RR Sbjct: 61 GLMLCEEIR-RDYDIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + G +V+ + V V G + L KE++++ L+ + T+E L + Sbjct: 120 YRIVSSEKLQLGGTTVDRHSYEVNVHGENVPLPLKEFELLAQLASQPGRIFTREQLLRPI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENAK 226 + E + + IDV I +LR++ + + I TV G GY L A+ Sbjct: 180 WGADYEGDDRTIDVHIKRLRERFAPFGLSAGFAITTVRGLGYKLEATAE 228 >gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601] gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601] Length = 230 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G++ E+ + +ILD+ + ++ G EV Sbjct: 4 ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++ I+RR + Sbjct: 64 CKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRRIQNI 123 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G + ++ D V V +HLT E+ ++ LL+ + E Sbjct: 124 QANSSVDTAKTIIGPIVIDKDQHIVTVNEKELHLTTSEFDILYLLASEPGRVFSSEYIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A G+N I+T+WG GY + Sbjct: 184 KIWQEKALGASKTVMVHISNLRDKLRVAMAGENVIKTIWGVGYKIE 229 >gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 236 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 73 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYDGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|210622429|ref|ZP_03293161.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275] gi|210154245|gb|EEA85251.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275] Length = 239 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 16/235 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A ++E+ L ++ +NV+ G +G+++ + E I+D+ + + G Sbjct: 6 ILVVEDEKEIAEAVEIYLLNQGYNVFKAFNGMEGLKVLENEEIHLAIVDIMMPVMDGITF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R + P+ +LS S DK+ GL GADDY++KPF EL+AR+ + +RR + Sbjct: 66 TMKAR-ENHNFPIIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 123 AQSL--------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 G L +N D K V V G+ + LT E++++ LL Sbjct: 125 MNIQKASSTEVEAVNENIYTIGGLELNDDTKEVSVDGNPVRLTPIEFKILGLLIKNPGRV 184 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 FPAEEIYERVWN-EAAINTDTVMVHVRNIREKIELDPKNPRYLKVVWGVGYKIEK 238 >gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA] gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA] gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system with QseC [Haemophilus influenzae 10810] Length = 221 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus] Length = 231 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL LK+EN+ V+ ++ +E + D ILD+ L G Sbjct: 4 KILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGASGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+K F EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N++ + ++ LT E+ ++ +L K ++ E Sbjct: 123 YSGVAEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >gi|229551853|ref|ZP_04440578.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314797|gb|EEN80770.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 248 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 19/244 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 ++L+IED+ ++A + + + E + V GE+G+ K FD I LDL L + G Sbjct: 7 KLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDG 66 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 +V + +R + P+ +L+ + D+V GL+ GADDY++KPF+ L+ARI+A+ R Sbjct: 67 MQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 126 Query: 118 ------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLR 164 + T ++ + + G +I LT KE+ ++ LS Sbjct: 127 EVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKS 186 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E L ++D + + +D I KLR+K+ G I+TVWG GY ++ Sbjct: 187 PKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDDS 244 Query: 225 AKDE 228 D+ Sbjct: 245 GLDQ 248 >gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 230 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA + L + V V GE+G + ++D ++LD+ L + G Sbjct: 1 MRILVVEDDMQLAEILREALSERQYVVDVARDGEEGWNWLELGKYDLLVLDVTLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCIL--------SGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + LR A+ PV + ++ DK+ GL +GADDY++KPF+ EL+ARI Sbjct: 61 LLCQRLRRAESHHPVSANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARI 120 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RA++RR + L+ G L +N G + LT KE+ ++ELL L++ Sbjct: 121 RALIRRGSSTSSVLLSWGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRS 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ D P + + I LR KL + +++IETV G GY L+ Sbjct: 181 GIIERVWSLDDSPAEETVTSHIRGLRHKLKSLGAPEDFIETVHGLGYRLK 230 >gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L+++DD + + +L E ++V V G+D ++ D I+LD+ L + Sbjct: 1 MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV++ LRVA + P+ +L+ ++ D+V+G + GADDY+ KPF EELVARI+A++RR Sbjct: 61 GLEVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ ++ D+ ++ + I L+ EY+++ L R LT+++ ++ + Sbjct: 121 NQVERHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +++V+I LR L G I T+ G GYV RE Sbjct: 181 WGLDFEGSSNVLEVYIGYLRNMLEAD-GEARLIHTIRGIGYVFRE 224 >gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 236 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G + +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAEALEVLVKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 230 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D + + +L+ F+V + + ++LD+ L D GFE Sbjct: 6 RVLVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRAGESHPRLVVLDVLLPDGDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A + L+ + D++ GL G DDY++KPF+ EELVAR+RA++RR Sbjct: 66 VCRTLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRRIGS 125 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++ + V G + L+ EY+++ L L L++ L+ + Sbjct: 126 TPVPATGVLRYADLELDEETCEVRRGGRLLSLSPTEYKLLRHLMLNPGRVLSRAQILDAV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D +I LR+KL G IET G GY LR Sbjct: 186 WRYDFDGASNVVDTYIGYLRRKL--DPLGPPLIETRRGFGYALRAPG 230 >gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 223 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVIEDDPDLNRQLVNALGEAGYAVDTAFDGEEGHFLGDSEPYDAVVLDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLEHWRRAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ + V V G + LT EY+++ L +++ + HLY+ Sbjct: 121 GHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVEHLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + I+VF+ +LRKK+ I+TV G GY+L A ET Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIDCD-----VIQTVRGLGYLL---AAPETAR 223 >gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 229 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + ++V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++L+++ V + I LT KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + + I K+R K N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 229 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA ++ L + V D GED + ++LD+ L + G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR K PV IL+ +++D+V GL GADDY++KPF+ E AR+RA++RR + Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L +L+A + + L+ +E + E+L R+ +TKE ++ L+ Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 D+ I+V++ ++RKKL I TV G GY+L ++ + E E Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNIT---IRTVRGMGYLLEKSGEKERSE 228 >gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 225 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L ++ L+ + V + G +G L E+ ++LD+ L I GF Sbjct: 1 MRILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+A+R + PV +L+ +ED+V+GLQ GADDY+ KPF+ EL+AR++A++RR + Sbjct: 61 TVLQAIR-RTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL +++ ++ V R+ LT KE+ ++ +L R+ L++ ++D Sbjct: 120 AQDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +++V I +LR K+ + + TV G GYVL + + Sbjct: 180 MNFDSDTNVVEVAIRRLRSKI-DDPFEVKLLHTVRGMGYVLEDRSW 224 >gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + P+ +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILSFGPLTLVPERFEAVWFESVVKLTHLEFELLHCLLQRHGQTVSPSDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ + +++ I V I LR KL YI+TV+G GY L ++ Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPTNEQ 236 >gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 226 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQAE 221 >gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ +V GE G L ++D +++D + G Sbjct: 18 MKILVIEDDREAADYLQKAFAEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR +TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 78 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + +V I L +E++++E L +T+ M L +++ Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ + TV G GY+L+ Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGFDKP-ILHTVRGAGYMLK 239 >gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL +A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A + L++E F V G + + D +LD+ L DI GF+ Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV +L+ DK+ GL GADDY++KPFN E+VAR++ +RR + Sbjct: 64 LLQQIR-KTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 HAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS +++ + G + LT E++++ L + + + E Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+KL+ I+TVWG GY++ + Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273] gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + L+ V D G+DG+ L FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R STPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + DL ++L +++V G RI L +E++++E L +T+ M L Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P+ +IDV + +LR+K+ + I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKV-DKPFDTPLIHTIRNAGYMLRAE 226 >gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 234 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 4/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD LA L+ V G G++ FD ++LDL L G EV Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120 R LR PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRA+VRR Sbjct: 70 RELRSRSDV-PVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ G L V+ A+ V + G + LTG E+ ++ L+ R L +E + Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV + +LR+KL + I+TV G GY+L Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229 >gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] Length = 236 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905] gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 113/221 (51%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + +++ L++E +V G D + + D +I+D+ + ++ G+ Sbjct: 3 KLLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ KV+G G DDY+ KPF EL+ R+++I++R R Sbjct: 63 LCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G++ ++ V++ G I L KE++++ L+ T ++E + ++ Sbjct: 123 ALSQVVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I ++R++ G I T+ G GY L Sbjct: 183 DYEGDERTVDVHIKRIRERFPQEISGFA-IRTIRGLGYRLE 222 >gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB [Rhodopseudomonas palustris CGA009] gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L+SE + V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ GDL ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 APERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNIGREQDPIRTVRGAGYALDD 227 >gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ +F + V G+ G+E FD +ILD+ L + GFE Sbjct: 3 KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 V + +R AK P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A R Sbjct: 63 VCKQIRAAKDI-PIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + +I L+++ A+ V V + T KE+ +++ + N L+KE Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+KL Y+ETVWG GY Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRF 225 >gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ + +EL L++E F V G I L K ++ +ILD+ + + GF Sbjct: 7 IRVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMPGMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ + V +L+ ++D+V+GL GADDY+ KPF+ EEL+ARI A VR Sbjct: 67 EVCRMLK-KMENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRNQF 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G ++ K ++ +G + L+ EY++++ L L L+K M L+ ++ Sbjct: 126 PNLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V++ LR+KL + I T+ G GY Sbjct: 186 YDFAGEENIVEVYVRSLREKLKD--KDHQIIRTLRGAGYR 223 >gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ +EL L + V GEDG+ L K D I+LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 NSDSSAYGGLVIDRSAMTVTKDGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSAPTLIRTVRGVGYRLDPPV 228 >gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 252 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60 R+L+++D++ + I L L+ E F V + GE GI D IILD+ + I G Sbjct: 18 RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMPPGIDGL 77 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR + P+ +L+ + D++ GL++GADDY++KPF+ +EL+ RIRAI+RR Sbjct: 78 EVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRR 137 Query: 119 SRGHAQSLIVTGDL----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 G +N + V G I LT EY ++ L Sbjct: 138 QGRTKSPQGAAGAENGNMLEFEDLRMNTATREVTRAGRLIELTATEYNLLHLFMSHPRQV 197 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ L ++ E II+V++ LR+K+ ++ I+TV GYVL+ Sbjct: 198 LDRQTILQRVWGYEFLGETNIIEVYVRYLREKIEDSPSTPRLIQTVRSVGYVLK 251 >gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment'] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ A ++ L E V + + G++G L ++D I+LD L G Sbjct: 1 MRLLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLPGKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR +STP+ +++ ++ D+++GL +GADDY+ KPF EL+ARIRA++RR Sbjct: 61 QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DL ++ + V G I LT KEY +IE L+ R +T+ H+++ Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++DV I LRKK+ +A + I TV GRGY L E + Sbjct: 181 DEFDNLTNLVDVHISNLRKKI-DAGSTVSLIHTVRGRGYRLSEEQE 225 >gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC 33638] gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC 33638] Length = 239 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ ++ G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQAPPAIILLDLMLPGSDGISI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 REQPSESAPLLIDESRFQASYQGHFLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL + G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWEAE 234 >gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ALA I ++L+++ F G + D ++LDL L I G E Sbjct: 5 KILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 65 VCRLIRAESDV-PIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ V G I LT E+ ++ L+ R T+EM L ++ Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + + ++++V + +LR K+ + TV G GY Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGYK 222 >gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 114/228 (50%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L +E + V + G + +E K Y+ IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ +V G +GADDYI+KP + L+++++A++RR Sbjct: 66 EACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ G+L + + + +G I L KE++++ LL+ + ++ L Sbjct: 126 LKSDENAVNTIVKIGNLVIYKEEYKITNKGKEITLPRKEFELLSLLATKPGKVFKRDEIL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + IDV I KLR+K+ + + +TV G GY + Sbjct: 186 DKVWGNEVVVGGRTIDVHIRKLREKIGDKSF-----KTVKGVGYKFVD 228 >gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+EL + D ++LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G++ ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224 >gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12] Length = 255 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E + + GE+ EL + EFD ++LDL L I G Sbjct: 23 RILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISGTT 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R + P+ +++ S+ D + GL+ GADDY++KP++ EL+ARI A++RR Sbjct: 83 LCRRM-HELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 141 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + G + +++ + V + G KE++++E L K LT++ Sbjct: 142 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 201 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + K +DV + ++R K+ + TV G GY + + Sbjct: 202 LIGRVWGSDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRICDE 252 >gi|218680187|ref|ZP_03528084.1| putative Kdp operon transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V + D I+LDLGL D G + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVQEAPNAASARQSVADGTPDLIVLDLGLPDTSGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R +S PV ILS + V L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQEWREEGLSVPVIILSSRTDEAGIVTALESGADDYVTKPFGVNELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G I L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGQEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQIW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V++ +LR+K+ +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYVRQLRQKVEKIPDQPHYITTETGVGYRLREP 229 >gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552] gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552] Length = 235 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + ++ + LK++ + VY G++G+E+ +E I+D+ + + G + Sbjct: 5 ILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHEIHLAIVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR K P+ LS S DK+ GL G DDY++KPF ELVAR+ +RR Sbjct: 65 TMKLR-QKYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYEQI 123 Query: 123 AQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +T G L ++ K V + LT KE+Q++ELL + Sbjct: 124 IKLKNMTTNDNAQHKLVVGGLELDKYTKEVSANNKTVRLTAKEFQILELLMSYPGRVYSA 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ + I V I KLR+K+ Y++ VWG GY + + Sbjct: 184 EEIYQAVWKEEA-INTETIMVHIRKLREKIEINPKKPEYLKVVWGIGYKIEK 234 >gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + F V + G +G+ L ++ II+DL L + GFE Sbjct: 4 RILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115 + +R P+ I+S DK+R GADDYI+KPF+ ELVAR +A Sbjct: 64 LCSQIR-QVKEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTRYER 122 Query: 116 --VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R++ + + G ++ ++ V V+ + T +E+ ++E L+ N K Sbjct: 123 LTARQAEPSNAEIHIRGL-VIDKVSRRVYVRNQEVIFTTREFNLLEFLATHPNRVFNKNE 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 LFERIWGMDSSGDIATVTVHIRKLREKIEVDPSNPQYIETVWGAGYRF 229 >gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator [Delftia acidovorans SPH-1] gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++R+LR A PV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + A I TV G GY L D Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTLDAPDDD 227 >gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 233 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 7 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 67 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 186 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 231 >gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 259 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +EL D ++LD+ + + G+ V Sbjct: 22 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYGV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 82 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEKE 140 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++ + + V RI LTG E+ ++ELL R + L Sbjct: 141 QVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 200 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 201 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 248 >gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614] gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + L++ + V G + +EL + D +ILDLGL D+ G + Sbjct: 3 RVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLDGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V+ LR + P+ +LSG S DKV L +GADDY++KPF +EL+AR+RA+ R Sbjct: 63 VIAGLRG-WTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRRNQA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GD+ V+L A V V+G I LT E+ ++E+L +++ L ++ Sbjct: 122 VDPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +++ +LR+KL Y T G GY Sbjct: 182 PGYETAQGNLRLYVAQLRRKLEPDPSRPRYFRTEPGMGYRFEP 224 >gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ + +L FN + + I + D I+LD G + Sbjct: 4 KILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ EDKVRGL+ GADDY++KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRRS 123 Query: 120 RGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + + V V + + E++++ ++E L+++ Sbjct: 124 SPTSLEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + + I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEP-SEHDRLIQTVRGAGYRF 225 >gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G++ Sbjct: 7 KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVMLPDVNGWD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 ++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 67 IVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++D Sbjct: 127 VIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + IDV + +LR K+ + I+TV G GY+L Sbjct: 187 MNFDSDTNAIDVAVKRLRAKI-DNDFEPKLIQTVRGVGYMLE 227 >gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E F V G + +E + + D +I+D+ + + G Sbjct: 13 ILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGNQVDLLIVDVMMPGLDGIRT 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 73 TLKVR-ENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 131 Query: 123 AQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G L +N D K V V G I LT EY ++ LL + + Sbjct: 132 GNMNQQAEGQVFKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDEIY 191 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 192 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEKQ 240 >gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 248 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ +E L +NV G + +EL D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++ + + V RI LTG E+ ++ELL R + L Sbjct: 130 AIAGIPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + ++ + V G++G+ L K ++D +ILD L + G Sbjct: 3 MRILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRMLPKLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +L ALR + TPV ILS +S ++++V+GL++G DDY++KPF EL+ R R Sbjct: 63 TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + I G L + L + V + + L KE+Q+++ L N +++ + ++ Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +IDV I KLR+K G IETV G GY L Sbjct: 183 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRL 223 >gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 6 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 66 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 125 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 185 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 230 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + L+ F V+ G + + + + D IILD + + G E Sbjct: 5 KILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMSGIE 64 Query: 62 VL--RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 V R PV ILS D+ GL +GADDYI+KPF+ ELV+R++A + R Sbjct: 65 VCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRRA 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A ++ DL + V G + L KEYQ++ L R ++ + L+ + Sbjct: 125 RPALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLDRV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVL 221 + E + +DV +LRK ++ + N I TV G GY L Sbjct: 185 WGHGVFVEERTVDVHFSRLRKAINGAASDNDKRPNLIRTVRGGGYAL 231 >gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V V+ G +E D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R TPV IL+ D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGTSE 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ D++ + +HLT KE+ ++ +L +T+E + ++D Sbjct: 124 TPVVQGV---RIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 K +D+ I LR+KL + A YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGFRFE 220 >gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 226 >gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916] Length = 248 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +E L +NV G + +E + E D ++LD+ + + G+ V Sbjct: 11 ILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 CQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKE 129 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I DL ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC 23457] gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1 str. Rev.1] gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3 str. Ether] gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC 23457] gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28] gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90] Length = 235 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ + TV G GY+L+ ++ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLKAGRGKQSA 230 >gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V GE+ + L D I+LD L + G EV Sbjct: 7 VLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIEV 66 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R +R P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA R Sbjct: 67 CRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRRTR 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++ + V +G + L E++++ + ++E L+ ++ Sbjct: 127 PSTVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L GG + + TV G GY L Sbjct: 187 GRDIYVDTRTVDVHIGRLRKALCQ-FGGDDPLRTVRGAGYAL 227 >gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 121/227 (53%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +++ ++ L+ E + V G++ +E + + D ++LD+ + + G++ Sbjct: 3 KVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVMMPRLSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + + + + I DKV GL+ GADDY++KPF+ E++AR++A+ RRSR Sbjct: 63 VCRKLENRQRPAILLL-TVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +NL +TV +G + LT KE+ +I LL+ ++E Sbjct: 122 VENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREA 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L ++D + +D+ + +LRKKL + + I+TV+G GY Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGDLH---DVIQTVYGIGYK 225 >gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 R+L+ ED+ ++ + + L + V + GED ++ + E FD +LD+ + I G Sbjct: 3 RVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R S + +LS S DK+ L SGADDYI+KPF+ EL+AR+ A+ RR Sbjct: 63 MQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRRV 122 Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A I +G +NL ++TV +I LT EYQ++E +N L + Sbjct: 123 NRSAVKPEEASTITSGPFVLNLKSRTVTKNNKQIDLTQVEYQIMEYFFKNQNAALDRSSI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LNH++ + KI+DV I ++R K+ + YI T+WG GY Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGYKW 229 >gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K++ + L+ E + VY + G +GI+L K + +ILDL L DI G EV Sbjct: 4 ILIIEDEKSVLEVTKAYLEREGYRVYCAENGLEGIKLFKKNDIQLVILDLMLPDIEGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + + +S+ DK+ GL GAD+Y+ KP + EL AR+ A+ RR Sbjct: 64 CKILRKISEVYIFML-TAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGVE 122 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L +N ++V++ G + LT E+ ++ LL+ + T+E + ++ Sbjct: 123 EPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVFT 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ID I LRKK+ + YI TV GY Sbjct: 183 MDFEGSDRTIDAHIKNLRKKIEENSKEPRYILTVTRIGYKF 223 >gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I++G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ LA +EL LK E F+V+V G +G+EL ++D I+LD+ L + G E Sbjct: 4 RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V R +R A STP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA R Sbjct: 64 VCRRIR-AAKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ A+TV+ I LT +EY ++ N LT++ L+ ++ Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++DV++ LR+KL YI+TV G GYV+R Sbjct: 183 FDAEVETNVVDVYVRYLRQKLDEHDKE-RYIQTVRGTGYVMRP 224 >gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV R+ L KE+ ++ L+ T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKERLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp. AO22] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++R+LR A PV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + A I TV G GY L D Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTLDAPDDD 227 >gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E ++ GE+G++ FDA+ILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+++R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKSIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I ++ V+ + V + GH + LT E+ ++E+L +KE + Sbjct: 124 PASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMF 224 >gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 241 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ +V GE G L ++D +++D + G Sbjct: 18 MKILVIEDDREAADYLQKAFNEAGHTAHVAGDGETGFALADTGDYDVMVIDRMMPRRDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR +TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 78 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + +V I L +E++++E L +T+ M L +++ Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ + TV G GY+L+ Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGFDKP-ILHTVRGAGYMLK 239 >gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08] gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07] gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08] gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + SIE+ LKSE F +Y G +E+ + I++D+ + + G + Sbjct: 4 ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ ++S S DK+ GL GADDYI+KPFN EL+AR+++ +RR Sbjct: 64 TVKIREERNI-PIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVTL 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L +N K V++ G I +T EY++IELL K + + Sbjct: 123 GNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ +++ VWG GY + + Sbjct: 183 KVWNEESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIEK 229 >gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L E +NV + G + +++ + + +ILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ +L+ S D+++G G D+YISKPF+ + LVAR+ AI R Sbjct: 65 QVCREIR-ESSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRRTL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ G ++++ A V++ G I L+ KE++++ + L++E LN+++ Sbjct: 124 GSDAGDVMEAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ID + KLR KL + YI T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG---EYIRTIWGMGYKF 222 >gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116] gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ [Alteromonas sp. SN2] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD L ++ +L+ ++V + D GE + L Y +D I+D+GL + GF Sbjct: 1 MRILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R I PV IL+ ++KV GL +GADDY++KPF+ EEL+AR++A++RR+ Sbjct: 61 EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G +S++ A+ + V + LT EY+++E L L ++K H+YD Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +I+VF+ +LRKKL + IET+ GRGY + N Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPENSFKPIETLRGRGYRINRN 223 >gi|153003748|ref|YP_001378073.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027321|gb|ABS25089.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 234 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+ LA L+ V G G+E ++A++LDL L G EV Sbjct: 9 VLLVEDDRRLADLTREYLEGHGLAVVHVADGRRGLEEALSGRYEAVLLDLMLPGKDGLEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRAIVRR+RG Sbjct: 69 CRELRARSDV-PVIVLTARGEEADRVLGLELGADDYLAKPFSPRELLARIRAIVRRARGR 127 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G L V+ A+ V + G I LTG E+ +++ L+ R L++E + Sbjct: 128 AGPAASTLRVGGLVVDPGARRVTLDGREIALTGYEFALLDALARRAGRVLSREQLMELAG 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E + IDV + +LR+KL + I+TV G GY+L + Sbjct: 188 GSAEEAFDRSIDVHVSRLRQKLGDDPKRPRLIKTVRGAGYLLAAEGE 234 >gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 237 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F+V G++ + L ++ D ++LD+ L D+ GF+ Sbjct: 7 RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR ++ PV L+ S++ED++ GL +GADDY+SKPF+ EE+V RIRAI+RRS+ Sbjct: 67 VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQV 126 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +G L + DA V I L+ E++++ L + ++K L+ Sbjct: 127 EPYPGADSGVLRYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I++ ++ LRKK+ + I T+ G GY LR Sbjct: 187 RVWNYDFGGDGRIVESYVYYLRKKV--DSRAPALIHTIRGVGYTLR 230 >gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +++E + G + + + + +ILD+ + + G Sbjct: 1 MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ILS + DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 IEVIKEVRKDSQI-PIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + G L++N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +L + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 18 RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR + PV L+ ++EDKV GL GADDY++KPF+ EE+V R+R I+RR+ Sbjct: 78 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 137 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ D + V G + L+ E+ ++ + T L+K L+H+ Sbjct: 138 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ EV +++ ++ LR+K+ I T+ G GYV+RE Sbjct: 198 WNYDFGGEVGVVESYVSYLRRKI--DTTEPRLIHTLRGVGYVMREP 241 >gi|15866137|gb|AAL10207.1|AF410884_3 MtrA [Mycobacterium avium subsp. paratuberculosis] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 235 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 132/229 (57%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ A+ IEL+L+ EN+ V + G+ ++L + D ++LDL L D G++ Sbjct: 3 KILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + K + PV +LS + + DKV GL+ GA+DY++KPF+ EL+ARI+ I+RR+ Sbjct: 63 L-CKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + I+ +L+ +L+++ V G + LT KE++++E L R + T++ Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + + + +D+ I +LRKKL + A Y+ T++G GY L Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230 >gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D ++LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 STDSATYGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++D + +LR K+ + I TV G GY L A Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDVPA 228 >gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] Length = 238 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L+ + F V G++ + D ++LD L + G EV Sbjct: 13 ILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPALSGLEV 72 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR + P+ +++ + +D VR L +GADDYI+KPF + L+ARIRA+ R Sbjct: 73 CRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRRSG 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + D++++ DA V G +HL EY+++E ++E L+ ++ Sbjct: 133 GVATKGTLAWHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK ++ G + I TV GY L Sbjct: 193 GRDIHVEPRTVDVHIRRLRKAVNGE-GEVDIIRTVRSAGYAL 233 >gi|238920016|ref|YP_002933531.1| DNA-binding transcriptional activator CusR [Edwardsiella ictaluri 93-146] gi|238869585|gb|ACR69296.1| transcriptional activator protein CopR [Edwardsiella ictaluri 93-146] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F +TD G G L +D IILD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGKYLCKGLTEAGFVADLTDNGLTGYHLAMTASYDLIILDILLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +++R LR A P+ +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRNANQGMPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLS++L ++ V G RI LTGKE+ ++E + L + + + ++ Sbjct: 121 THIPESQLHVADLSLDLLSRKVTRSGKRITLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + IDV + +LR K+ I+TV G GY+L A DE Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDF-EPKLIQTVRGVGYLLE--APDE 226 >gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + +S+E L+ F+ G + A++LD+ + + G Sbjct: 6 RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR P+C+LS SS+ D++ GL++GADDY++KPF ELVAR+RA++RR+ Sbjct: 66 VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 125 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G L+V+L + G RI LT +E+ ++ +L+ L++ L + Sbjct: 126 ATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DVF+ LRKKL G I TV G G+VLR Sbjct: 186 WGYDFAADTNVVDVFVTYLRKKLEVD-GAPRVIHTVRGVGFVLRAE 230 >gi|254776645|ref|ZP_05218161.1| DNA-binding response regulator MtrA [Mycobacterium avium subsp. avium ATCC 25291] gi|45645201|sp|Q93CB8|MTRA_MYCPA RecName: Full=DNA-binding response regulator mtrA gi|61228246|sp|P0A5Z4|MTRA_MYCTU RecName: Full=DNA-binding response regulator mtrA gi|61228247|sp|P0A5Z5|MTRA_MYCBO RecName: Full=DNA-binding response regulator mtrA gi|509815|gb|AAB07804.1| MtrA [Mycobacterium tuberculosis H37Rv] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ V GE G L +D ++D L G Sbjct: 1 MKILIIEDDREAASFLKKAFSEAGHIADVASDGEAGFALADGGNYDVFVIDRMLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR +TP ILS + ++D+V GL++G DDY++KP+ EL+AR+ R Sbjct: 61 SVIAGLRANGNTTPALILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLKRRAG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++L GDL ++ + TV G I L +E++++E L +T+ M L +++ Sbjct: 121 TRDVETLYRAGDLELDRLSHTVRRGGQEITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV + +LR K+ + TV G GY++R + Sbjct: 181 DYHFDPQTNVIDVHVSRLRGKIERGFDKP-ILHTVRGAGYMIRAD 224 >gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+K L +E +L E ++V + D G G+EL + +D +ILD L G Sbjct: 1 MRILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR +TPV L+ +I+D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 QICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S DL ++ + + G I L+ KE Q++ L LT E H Sbjct: 121 NFEASNSSKLKCADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTYPGQLLTHEQIYQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++P ++ + LR+K+ I TV+G+GY EN Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIEADGETP-LINTVYGKGYRFGEN 226 >gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter sphaeroides f. sp. denitrificans] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L+SE F V G++ + L + D I+LD L + G EV Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + S P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R+ R Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V G + L E++++ + ++E L+ ++ Sbjct: 129 PSSVGLTLEFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L GG++ + TV G GY L Sbjct: 189 GRDIYVDSRTVDVHVGRLRKALCLH-GGEDPVRTVRGAGYAL 229 >gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 223 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V V+ G +E D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGLPELDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 64 ARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSTE 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ +++ + + LT KE+ ++ +L +T+E + ++D Sbjct: 124 TPIVQGV---RIDAESRRAWMGDQELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 K +D+ I LR+KL + A YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAANPRYITTVRGVGFRFE 220 >gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 234 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + F V G +E+ ++ DA ILD+ + + GFE Sbjct: 7 KVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMPGMDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 67 LLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAQ 126 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ + L+ + D V G + L+ E+ ++ L L L+K L+ Sbjct: 127 VAEEVEDDNVLTYDDLVLNDDTHEVTKGGTVVELSPTEFNLLRYLMLNAEVVLSKPKILD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + +++ +I LR+K+ G I TV G GYVLR+ Sbjct: 187 NVWHYDFGGDGNVVESYISYLRRKI--DTGDVPLIHTVRGVGYVLRKP 232 >gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I L E F+V GE+ + + + D I+D+ + + GF+ Sbjct: 4 KILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPVMDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ PV +L+ S DK+RG G DDY++KPF+ +EL+AR++ I++R Sbjct: 64 LVEEMK-EFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++Q+++ D+ + D + +HL K++++ L+ N T+E + ++ Sbjct: 123 NSQNIVQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I ++R+ L + G K + TV G GY + Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKIE 221 >gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 247 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G I + ++ DA++LD+ L D+ GFE Sbjct: 22 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV L+ ++E++V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 82 VLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 141 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL++N ++ V G I LT E++++ L L+K L+ Sbjct: 142 AVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILDR 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ AG + I T+ G GY+L+ Sbjct: 202 VWNYDFGGQANVVELYISYLRKKI--DAGRQPMIHTLRGAGYLLKP 245 >gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067] gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y+ G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL + E Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLVSEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL +A GG+N I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230 >gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+EL + D ++LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G + ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 STDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224 >gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 236 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3] gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLRTRSTV-PIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + T G + ++++ V V G + L KE++++E+ LT+ ++ + Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + K +DV + +LR K+ + G ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEHEPGNPRHLVTVRGLGYKFEP 226 >gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + I L E F + G IE K D I+LDL L + G Sbjct: 3 KILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLMLPKLNGIT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + + + S EDK+ G ++GADDYI+KPF+ + LVA+I+A+++R + Sbjct: 63 VCSKIREISDVHIIML-TAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIKE 121 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +N ++ V + G + LT KE +I L+ K L++E L ++ Sbjct: 122 DEKEDGVLQFDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++ +D + +LR+KL + A I TV G GY Sbjct: 182 GFDYEGDIRTVDTNVKRLRQKLKDKA---TVISTVRGSGYKFE 221 >gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L L+++ F G++ + + D ++LD+ + + G+ + Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A P+ +L+ +KV+G + G DDY++KPF+ EL R+RA+++R + Sbjct: 73 SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I G++ ++ V + L KE++++ L+ T+ ++ ++ Sbjct: 133 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ A IETV G GY L Sbjct: 193 YAGDDRTVDVHIKRLRERF--ATTHDFRIETVRGLGYRLE 230 >gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +D I+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3] gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 241 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+ S+NL + + I LT E+ ++++L L+++ Sbjct: 127 EVPGAPTQQEEEITFGEFSLNLATREMHHGEEAIALTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + A YI+TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEVDAANPRYIQTVWGLGYVFVPDG 237 >gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] Length = 247 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+K +A +EL L+ E ++V V G +G+ L FD ++LD+ L I G E Sbjct: 26 KILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGIE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ ++ D+V GL +GADDYI KPF EEL+ARIR I+RR+ Sbjct: 86 ICRRIRTQSQV-PIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + D+ +++ A V VQG+++ LT EY +++LL KN T+E L + Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++DV+I LR KL YIETV G GYV+RE Sbjct: 205 WGYDTDIETNVVDVYIRHLRSKLPGDTNA--YIETVRGVGYVMRE 247 >gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ L ++E L+ E + V + G G + D IILD+ L GF V Sbjct: 4 ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIMLPGRDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 LR A I+TPV +L+ S D V GL+ GADDY++KPF+ L+AR+ A++RR+ Sbjct: 64 CSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRATMA 123 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G ++LD + + + + L+ +EY+++E L R N L+++ Sbjct: 124 SSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRDQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ E + +DV + KLR+KL +I T+ GRGY Sbjct: 184 MDEVWSYSSEATSRTVDVHVAKLRQKLGE-TAIPRHILTIRGRGYKFIP 231 >gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae CIP 101886] gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae CIP 101886] Length = 238 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTV 125 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ G +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPASEEKVVEFGQFRLNLGTREMFRNDEPLTLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ + YI+TVWG GYV + + Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEEDPSKPRYIQTVWGLGYVFVPDGE 237 >gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA I+ L + F V V G + + + + +DAI+LD+ L + GF Sbjct: 7 MRLLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVMLPGLNGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + TP+ +L+ M D+V+ L SGADDY++KPF+ L+AR+RA+VRR Sbjct: 67 AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I GDL V+ A G I LT KE+ ++ LL+ R +TK L H +D Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + I++V++ LR+K+ +A + TV G GY+L Sbjct: 187 FAFEGDPNIVEVYVSALRRKI-DAPFAVRTLTTVRGSGYLLE 227 >gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKEYSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 122 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + G G++ ++D +ILDL L GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKRVR-EVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A LI L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|306790486|ref|ZP_07428808.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu004] gi|308333099|gb|EFP21950.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu004] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 127/228 (55%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G G+ + ++D IILD+ L DI G+ Sbjct: 1 MKLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 E+ ++LR + +TP+ +L+ + ++E +V+GL+ GADDY+ KPF+ EL+AR+R + R + Sbjct: 61 EIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +L V+L + V + +I LT KE+ ++E L + L++ + + ++ Sbjct: 121 SSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV + +LR K+ + I T+ G GY+L D Sbjct: 181 DMNFDSDTNVIDVAVKRLRAKI-DQGYEPKLIHTIRGMGYLLEIPEND 227 >gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 119/228 (52%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DDK + +I + L++E + V+ G + I+L + + II+D+ + + G Sbjct: 1 MNILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIMMPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 61 TATMKIR-QDNMIPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRRYT 119 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ TG L ++ + K + V +HLT +Y++++LL+ T E Sbjct: 120 TFGSLERSSAVFQTGGLVIDDEQKVITVDKQEVHLTPVQYKILKLLTANAGRVFTIEEIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ R + V I K+R+K+ Y++ VWG GY + + Sbjct: 180 EKVWNVRAINPENTVSVHIRKIREKIEINPKEPKYLKVVWGVGYKVEK 227 >gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I LK E + V+ G++ I K D IILD+ + + G E Sbjct: 7 KILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R T + L+ S ++ G GADDYI+KP L++RI AI+RR+ Sbjct: 67 ACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRN 126 Query: 120 RGHAQSLIVTGDLSVNLDAKT----VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +L +I L KE++++ LL+ + N T+E L Sbjct: 127 TAEDEIHEGNRLEVSDLVIDRDSFLAYRGADKITLAKKEFELLYLLASKPNKVFTREQIL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + IDV I KLR+K+ Y+ TV G GY Sbjct: 187 KSIWEDSVVVTNRTIDVHIRKLREKIGEN-----YVATVKGVGYKFE 228 >gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD+ A I L + V G G+ + + ++D +I+D L ++ G Sbjct: 1 MHILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR--AIVRR 118 +++ LR STPV ILS + ++D+V GL +G DDY+ KP+ EL+AR++ A R Sbjct: 61 SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + H Q ++ DL ++ + V G +I+L +E++++E L +T+ M L + Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV I +LR K+ I T G GY + + + Sbjct: 181 WEYNFDPQTNVIDVHISRLRSKIDKDF-NPPLIHTERGAGYSMYDPS 226 >gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei] Length = 223 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD L + L+ E F V GE+ ++ FDAIILD+ L + GFE Sbjct: 4 HILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 64 VLKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + L +++ G + LT E+ ++E+L +KE + Sbjct: 123 IPAQRPIIEHQGI-LVDESLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGR 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ I+TV G GY+ Sbjct: 182 KYTAYDRSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMF 221 >gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A IE+ LK++ + V+ G D ++ + D +ILD+ L D+ GF + Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVMLPDVDGFRI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 65 CQKIR-EQYFYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVRY 123 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + LS+N + + G + LT E+ ++ L + ++ E Sbjct: 124 NQPINKQALENIEYDIRGLSINKNNHKCSLFGKELQLTPIEFSILWYLCDHQGKVVSSEE 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + I +LR+K+ A +I+TVWG GY + Sbjct: 184 LFEAVWKEKYLDNNNTVMAHIGRLREKMKEPAKKPKFIKTVWGVGYTIE 232 >gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614] gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614] Length = 297 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 10/227 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED+ LA + L+ + V + G ++L + + D +ILDLGL I G EV Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR V +L+ S D + GL GADDY++KPF+ EL+AR++AI+RR R Sbjct: 127 RRLRTFSDCY-VVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKT 185 Query: 124 QSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G LS++++A+ V ++ + LT E+ ++ L+ R ++ Sbjct: 186 GQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQL 245 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + ++DV I LR+KL + A Y+ TV G GY + Sbjct: 246 IDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3] gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 128/230 (55%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ +V + G DG+ L + +D I+LD+ L + G+ Sbjct: 1 MRILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ +ED+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 AVLQRLR-ASKATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ + V RI LT +E+ ++ LL+ R+ L++ ++++D Sbjct: 120 PRESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + ++DV I +LR K+ + + TV G GYVL KDE Sbjct: 180 MNFDSDTNVVDVAIRRLRVKI-DDEFPVKLVHTVRGVGYVLE--LKDEAP 226 >gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621] gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621] gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+ I L +V E + L + D ++LD L G +V Sbjct: 5 ILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGASGIDV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + LR P+ +L+ S +DKV GL++GADDYI+KPF+ EL+ARI+A+ RR+ Sbjct: 65 AKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L ++ V G I L E++++ ++ L+ ++ Sbjct: 125 PQMTDDAVDVQGLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LR L I+TV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRSALE-GTQHDGLIQTVRGTGYRF 225 >gi|320106762|ref|YP_004182352.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925283|gb|ADV82358.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDD +A +E L E V V+ G +G +L +FDA +LD+ L ++ GF Sbjct: 1 MNVLVIEDDFRIASLVERALIEEGHRVVVSGDGREGADLLLTGQFDAALLDIFLPEMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R + TP+ +L+ + ++ VR GADDY+ KPF E L+AR+ AI RR Sbjct: 61 EVLERVRTQQCKTPILVLTAVDAVPKIVRAFDLGADDYLVKPFIVEILLARVGAIARRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H++ TG + ++ + G I LT K++++++ L RK T+E + + Sbjct: 121 NHSEEAPETGSVVLDRGRRLALRHGKEIALTKKQFELLDTLMRRKGLITTREQLIEAGWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222 + + + +DV+I LR KL + + G+ I TV G GY+ Sbjct: 181 IQADVKENTLDVYIHGLRAKLEDQSDKGQPLIRTVHGSGYMFV 223 >gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus ATCC 53653] gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ANDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++D + +LR K+ + I TV G GY L A Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAPA 225 >gi|290769853|gb|ADD61625.1| putative protein [uncultured organism] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ L S+ L+ + + GE +EL +D ++LDL L + G Sbjct: 1 MRLLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKVNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV ILS S I DKV GL +GA+DY++KPF+ EL AR+R++ RR Sbjct: 61 TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ + ++ G I LT KE ++E L L + +++E + H++D Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I V I LRKKL A G + I G GY L EN Sbjct: 181 SSVDAFSNSIRVHISALRKKLRTALGY-DPIRNRIGEGYELEENEP 225 >gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ L S+ L+ + + GE+G+ELC +D I+LDL L I G Sbjct: 1 MHILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV ILS I+DKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 EILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + + V G + LT KE ++E L +N ++ E + HL+D Sbjct: 121 IQEDVCLRCSRITFDTRTREASVDGTPLALTRKESALLEYFLLHRNRIISPEEMIEHLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G I V I LRKKL A G + I+ G+GY+L E Sbjct: 181 GSVNSFSNSIRVHISSLRKKLRTALGY-DPIQNKIGQGYILEE 222 >gi|158425689|ref|YP_001526981.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158332578|dbj|BAF90063.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 233 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + + G ++ K D ILD+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++A++RR Sbjct: 64 LRRLR-QKTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGAK 122 Query: 123 AQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L ++ + T +G + LT E+ +++ L+ R ++ Sbjct: 123 DGTAPREVDSAKVLERGLLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRNA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ YD + + + ID I +LRKK +A + IET++G GY +E+ Sbjct: 183 LMDAAYDDQVYVDDRTIDSHIKRLRKKFKSADDNFDMIETLYGVGYRFKES 233 >gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +D I+LD+ + ++ GF Sbjct: 10 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 129 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 232 >gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator protein [Vibrio sp. Ex25] gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator protein [Vibrio sp. Ex25] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+ARI+ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHI 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL +++ + G + LT KEY ++ELL + L++ + Sbjct: 121 SAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227 >gi|229917896|ref|YP_002886542.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469325|gb|ACQ71097.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR I + +DD+A+ + + LK+E + + G++ ++L D +ILDL + Sbjct: 1 MRSQPVICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPV 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G E +R P+ +L+ +S D ++G+ GADDYI KPFN E+ R+++++ Sbjct: 61 MGGIEACIEIR-KTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLL 119 Query: 117 RRSRGHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RR R + +++++L + I LT KE+ ++ N LT Sbjct: 120 RRYRDYGSDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + V I K+R+KL + I+TVWG GY L Sbjct: 180 VEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 236 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V + + GE+ + L D I+LD L ++ G EV Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIEV 67 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R + + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R R Sbjct: 68 CRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRVR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++V GD++++ + V H I L E++++ + ++++ L+ ++ Sbjct: 128 PTTMGQVLVYGDITLDSETHRVTRGEHPIKLGPTEFKLLASFMEKPGRVWSRDLLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L+ GG + + T+ G GY L Sbjct: 188 GREIYVDTRTVDVHVGRLRKALNQ-FGGDDPLRTIRGAGYAL 228 >gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 234 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+AL I LK E + V G + F+ +ILDLGL + G Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR A PV +L+ + D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + ++ + V QG I+L KE+ ++ L + LT++ LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++V I LRKK I TV G GY Sbjct: 196 WDEDVESNALEVHIHHLRKKF-----FPELIRTVRGVGY 229 >gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72] gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D ++LD+ L + G+ Sbjct: 1 MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A PV L+ +ED+VRGL+ GADDY+ KPF EL+AR+R ++RR + Sbjct: 61 GVLQTVRRAGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++D Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+V + +LR K+ + + I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DDSFEPKLIRTVRGMGYVLEAPG 224 >gi|57234028|ref|YP_181944.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224476|gb|AAW39533.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 225 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD LA I L+ + V G+ G E+ Y FD IILD+ L ++ GF Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +R TP+ +L+ DKV GL GADDY+ KPF+ EL+AR+RA++RR+ Sbjct: 63 AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I L++N + G I LT KEY ++E L L KN +TK M H+++ Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+V I ++RKKL N I+TV G GY++ + Sbjct: 183 SESDIFSNVIEVLISRIRKKLDNNNKNS-LIKTVKGLGYIIED 224 >gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + +E L + V G D + + + D ++LD+ L D+ GFE Sbjct: 12 RILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR + TPV L+ + + D++ GL +G DDY+ KPF+ EE++ RIRAI+RR+ Sbjct: 72 VTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTGH 131 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + DL ++ A V G I L+ E++++ L N L+K Sbjct: 132 DVPYEMGEDEAEVLRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLSKSQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + +I++ ++ LR+K+ I T G GY LR Sbjct: 192 ILDRVWGYDFSGDGRIVETYVRYLRRKI--DHLDPPLIHTQRGVGYCLR 238 >gi|290473269|ref|YP_003466135.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289172568|emb|CBJ79337.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 239 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L IILDL L G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANAEQMDRLLTRESIQLIILDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ ++S D++ GL+ GADDY+ KPFN EL+AR+RA++RR Sbjct: 66 ICRRLRSQHNPIPIIMVSAKGEEVDRIVGLEIGADDYLVKPFNPRELLARMRAVMRRQSH 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G ++L + + + ++ LT E+ ++++L L+++ Sbjct: 126 ELPGAPTPDNAVVKFGKFKLDLGTREMFHEDEQLSLTSGEFSVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV + +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYGAMERSIDVQVSRLRRLIEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + +IE+ LK+E+ V+ G++ +++ + + I++D+ + + G Sbjct: 6 VLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLEREDIQLILMDIMMPKMDGMTA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K + P+ +LS S DK+ GL GADDY++KPFN EL+AR+++ +RR Sbjct: 66 TFQIR-QKKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRFTNL 124 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I ++ V N K V + G+ + LT EY+++ELL K + E Sbjct: 125 GSAQITEDEIQVRGLTLNKSTKNVAIDGNEVRLTATEYKILELLMENKGRVFSIEEIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V + ++R+K+ Y++ VWG GY + + Sbjct: 185 VWREPYMNAENTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKIEK 230 >gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402] gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402] gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 236 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + ++ + LK++ +NV GE+G+ L + E ++D+ + + G + Sbjct: 5 ILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANEIHLAVVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + LR PV LS S DK+ GL G DDYI+KPF EL+AR+ + +RR Sbjct: 65 VLKLR-ENYDFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRRYNQI 123 Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + Q +V G L ++ K V V + LT KE+Q++ELL + Sbjct: 124 LALKENRNLNNNQQRLVVGGLELDKFTKEVFVNDRGVRLTAKEFQILELLMSYPGRVYSA 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ + I V + KLR+K+ Y++ VWG GY + + Sbjct: 184 EEIYEAVWKEEA-INTETIMVHVRKLREKIEANPKKPEYLKVVWGIGYKIEK 234 >gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895] gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895] Length = 290 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 57 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 116 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 117 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 176 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 177 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 236 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 237 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 287 >gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ L+ + L++E ++V G++ + D ++LD L + G E Sbjct: 3 KVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWMLPGLSGIE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + + PV +L+ +++RGL +GADDY+ KPF+ EL+AR+RAI R Sbjct: 63 LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ +GD+ ++ + V IHL E++++E L ++E L+ + Sbjct: 123 SPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK L+ K+ I TV G GY + Sbjct: 183 WGHDVYVDERTVDVHVGRLRKALNK-GKAKDPIRTVRGAGYAFNDQ 227 >gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L] gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 233 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 7 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 67 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 186 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 231 >gi|24111908|ref|NP_706418.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a str. 301] gi|30062021|ref|NP_836192.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a str. 2457T] gi|24050711|gb|AAN42125.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|30040265|gb|AAP15998.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|281599865|gb|ADA72849.1| putative 2-component transcriptional regulator [Shigella flexneri 2002017] gi|313646838|gb|EFS11295.1| transcriptional activator protein irlR [Shigella flexneri 2a str. 2457T] gi|332761444|gb|EGJ91726.1| transcriptional activator protein irlR [Shigella flexneri 2747-71] gi|332763836|gb|EGJ94074.1| transcriptional activator protein irlR [Shigella flexneri K-671] gi|332768456|gb|EGJ98640.1| transcriptional activator protein copR [Shigella flexneri 2930-71] gi|333021888|gb|EGK41136.1| transcriptional activator protein irlR [Shigella flexneri K-304] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + IDV + LR K+ + I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKLLRGKI-DNDFEPKLIQTVRGVGYMLE 222 >gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter alkaliphilus HTCC2654] gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales bacterium HTCC2654] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L SE ++V + + G+D + L + D I+LD L + G E+ Sbjct: 8 VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLPGVSGIEI 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R PV +LS S D+VRGL++GADDY+ KPF+ +EL+ARIR R Sbjct: 68 CRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRTR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V G I L E++++ + ++E L+ ++ Sbjct: 128 PASVGQQLAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L G + + TV G GY L Sbjct: 188 GRDVYVDTRTVDVHVGRLRKALCKTGGD-DPLRTVRGTGYAL 228 >gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD ++A L+ F+V + G++G++ +++D IILD+ L GFE Sbjct: 3 KILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGKDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ +TP+ ++S DKVRGL GADDY++KPF+ ELVAR+RA + R Sbjct: 63 ICKEIRL-TKNTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIARFER 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G++S+ +++V V +LT KE+ ++ LL+ KE Sbjct: 122 LTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I ++R+K+ YIET+WG GY R Sbjct: 182 ETIWGWDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKFR 228 >gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+AL I LK E + V G + F+ +ILDLGL + G Sbjct: 1 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR A PV +L+ + D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + ++ + V QG I+L KE+ ++ L + LT++ LY Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++V I LRKK I TV G GY Sbjct: 181 WDEDVESNALEVHIHHLRKKF-----FPELIRTVRGVGY 214 >gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I+ +K+ +N Y G++ +E+ + + D +ILD+ + D+ G EV Sbjct: 4 ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLDGKEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R K STP+ LS DK+ GL GADDY++KPFN EL+AR++A++RRS Sbjct: 64 LRKIR-EKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTIF 122 Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I+ L ++ ++ V I LT EY++I +N TK Sbjct: 123 NNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + KII V+I KLR+K+ + N+I+T+ G GY+ + + Sbjct: 183 EVWGQCYLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIFQGD 230 >gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 232 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A I LK E F G G+ L + + DAI+LDL L I G Sbjct: 4 KILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLT 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVR 117 V R ++ TPV I++ D+V GL+ GADDYI KPF+ +E+VAR++A R Sbjct: 64 VNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRR 123 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G +++++ +G LT KE+ ++ L L +E LN Sbjct: 124 ETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNT 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + +DV I +LRKK+ +A ++ETV GY RE K Sbjct: 184 VWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGK 229 >gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L+++ F+V GE+ + + D I+LD + ++ G EV Sbjct: 8 VLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA +RR+R Sbjct: 68 CRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTR 127 Query: 121 GHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PATVGERLEYLDIVLDAETHRVTRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L GG++ + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALCQY-GGEDPLRTVRGAGYAL 228 >gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W] gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W] gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD+ LA L+ V + G +G+ + +D ++LDL L G Sbjct: 13 IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +++ D+V GL++GADDY+ KP++ EL+ARIRA VRR Sbjct: 73 EVCRELRTRSDV-PIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 131 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + + G L ++ + T + G + LT E+ ++ +L+ R L++E L+ Sbjct: 132 GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDL 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + DE + IDV I +LR+KL ++TV G GY+L Sbjct: 192 IKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235 >gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 223 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 64 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 124 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 184 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 219 >gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] Length = 231 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 10 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 70 CRRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 129 SSDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 230 >gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKEYSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 122 FNQQAGAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] Length = 227 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E + +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S DL ++ + V+ I LT +E+ ++ L +N L +E + ++ Sbjct: 124 VKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ I TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LIHTVRGVGYVLK 226 >gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330] gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365] gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo] gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str. 870] gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str. Tulya] gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str. 86/8/59] gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str. 513] gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str. 686] gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis M163/99/10] gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis B2/94] gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1] gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1] gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13] gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str. 292] gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis M292/94/1] gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33] gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1] gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94] gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str. C68] gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99] gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13] gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653] gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2] gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1] gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330] gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365] gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo] gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94] gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13] gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1] gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2] gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653] Length = 235 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ + TV G GY+L+ ++ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLKAGRGKQSA 230 >gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 246 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G + ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL--VARIRAIVRR 118 E+L +R P L+ +I+D++ GL +G DDY++KPF+ EE+ Sbjct: 82 ELLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V GDL +N+D + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLRYLMENPKRVISKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WNYDFGGQANIVELYISYLRKKI--DAVHPPMIHTVRGAGYVIKP 244 >gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] Length = 224 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L +I LK + V G D +E+ + +D IILDL L + G Sbjct: 1 MKILIVEDEQILNDTINKSLKKSGYEVESAFDGIDAMEMIEIESYDLIILDLNLPHMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR T V ILS S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ Sbjct: 61 EILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I + + + V V G + LT KE ++E L L + +++E + H++D Sbjct: 121 IQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL + IE G GY+LR+ Sbjct: 181 SSVDLLSNSIRVHISALRKKL-KNKLNYDPIENRIGVGYLLRK 222 >gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 228 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+EL + D ++LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G++ ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224 >gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 229 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + V G++ I +ILD+ + + G Sbjct: 1 MKILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+R +R PV +LS + DK++GL GADDY++KPFN E++AR+++++RRS Sbjct: 61 LAVVREVRKDSQI-PVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L + D+ VE G I LT E+ ++ LL+ N + + Sbjct: 120 QHDVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ + GG+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227 >gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4] gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4] Length = 252 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D +I+D L G Sbjct: 28 MKILVIEDDLEAAAYMTKAFREAGIMADHASDGEAGLFMGCENTYDVMIIDRMLPRRDGL 87 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I+TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 88 SVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + V G I L +E++++E L +T+ M L H++ Sbjct: 148 TPEQDMIYRVGDLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHVW 207 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++TV G GY++++ + Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFDRP-LLKTVRGAGYMIKDES 252 >gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] Length = 253 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 113/226 (50%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 +IL+++D+K + + + LK + + + + G+ I+L + + D II+D+ + ++ G Sbjct: 26 KILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSGT 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E A+R S PV L+ + DK +G DD++SKPF + ELV +++A++RR Sbjct: 86 ESCSAIR-EFSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRRYN 144 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G +S++ + V IHLT KE+ ++ L + + + Sbjct: 145 IYKGREDNNDGILRVGAISIDPYKRVVTKDNEVIHLTDKEFALLFFLVKNRGRSWNLDEL 204 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + P + V + +LR+K+ + I T++G+GY Sbjct: 205 YENIWQEKYLPSSSNTVMVHVLRLRQKIEDNPAQPEIIRTIYGKGY 250 >gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA IE L++ F+ V + G G+ + D ++LDL L DI G E Sbjct: 3 RILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISGHE 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR L+ + PV I+S D+++GL+ GADDY+ KPF+ EL+ R++A++RR+ Sbjct: 63 VLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRA 122 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G++ ++ V V+G + LT E++++ L R T+E+ L+ Sbjct: 123 DADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSD 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + E + +D I +LR+KL A + IETV G GY L Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKLNPP 226 >gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679] Length = 233 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++ +A IE+ LK++ + V LG++ ++ + FD +LD+ L DI GF+ Sbjct: 4 KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDIDGFK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R PV +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 64 IVQKIR-ENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQLRRFQK 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + L +N T + G I LT E+ ++ L+ RK + Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ + + I +LR+KL +I+TVWG GY + Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233 >gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 223 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ +A + L + ++ G +G+ L + + D +ILD+ L ++ G+ Sbjct: 1 MNILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ LR PV L+ S+ D+V+GL+ GADDY+ KPF+ EL+AR++ ++RRS Sbjct: 61 QVIQTLR-QFSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSS 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +L ++L V + I LT KEY ++ L+ + +T+ + +++ Sbjct: 120 AKVVEQLQVENLKIDLLEHKVYRDRNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV + +LR K+ + A I T+ G GY L N Sbjct: 180 INFDTDTNVVDVAVRRLRAKI-DDAYQPKLIHTIRGMGYKLDTN 222 >gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A IE+ L S+ + V+ + G+E+ + ++LD+ + + G Sbjct: 4 INILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIMMPGMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCKKIR-ENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYT 122 Query: 121 GHAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + +N D V V I LT E+ ++ LL+ + Sbjct: 123 QLNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 DEIFERVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC 15579] gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ G++ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + T + + ++ V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQTTDNIIRIESMVIDKKQHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ G I TVWG GY + + Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEKYMEGSKVIHTVWGVGYKIEK 230 >gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19] gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308 A] gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19] gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308 A] gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] Length = 235 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ + TV G GY+L+ ++ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLKAGRGKQSA 230 >gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 217 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + PV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++RS+ Sbjct: 61 SVLREIRKKDDT-PVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ ++ A+ V V+G +++LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KSSSDEILF----IDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I LR+KL ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDYIKTVRGYGYKFE 214 >gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 M+ IL+++D+ A+ + L E ++ V GE + + D I+LD L Sbjct: 1 MKMAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPG 60 Query: 57 IPGFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R L+ + PV +L+ EDKVRGL GADDYI+KPF+ EL+ARI+A Sbjct: 61 ISGVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKA 120 Query: 115 I-VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + R + + +I L ++ D+ + V G + + E++++ ++ Sbjct: 121 VLRRSAPLLSGEVIEVNGLKLDPDSHRLSVGGAPLEMGPTEFRLLHFFLTHLERVYSRGQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++++ E + +DV I +LRK L +G I+TV G GY Sbjct: 181 LIDYVWGNNVYVEERTVDVHIRRLRKSLEP-SGHDGLIQTVRGVGYRF 227 >gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + + + GE+G L + +DAIILDLGL I G Sbjct: 1 MRILVVEDDVDLSRQLVAAMTDAGYAADAAFDGEEGAWLGETEPYDAIILDLGLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R A I TPV IL+ +KV G+ +GADDY++KPF EE++ARIRA++RRS Sbjct: 61 SILERWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A++ + GDL ++ V +G + LTG E++++ L ++ +++ ++HLY Sbjct: 121 GVAKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 E + I+VFI +LR+K+ I TV G GY L E Sbjct: 181 QDFERDSNTIEVFIGRLRRKIPAD-----IIHTVRGLGYCLSAAVDPEGS 225 >gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 247 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 20 KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 80 TLEEIRKEYSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 139 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 199 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 239 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L++ + V G + EFD +ILDLGL + GF Sbjct: 1 MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+EDKVRGL GADDY++KPF +EL AR+RA+ RR Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L ++ + V + GH + L+ +E ++E+L R ++K+ + HL Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V++ +LRKK+ G I TV G GY L + Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIEV---GPVRIATVRGLGYCLEK 220 >gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] Length = 223 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD ++ + ++ +V + G + + FD ++LD+ L I G+ Sbjct: 3 KILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIMLPKIDGYG 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V +R K + P+ +L+ + + E++++GL ADDYI+KPF+ L+ +I A++RR Sbjct: 63 VCEVIR-QKSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSR 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL+++LD V + LT +E++++ L K LT++ L L+ Sbjct: 122 QDDVPQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IID I LRKKL A +YIET+ G GY + + Sbjct: 182 KYEFFGEERIIDTHIKNLRKKLGTA----DYIETIRGVGYRIDKE 222 >gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 226 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A +PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTA-HQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DEPFEKKLIMTVRGMGYRLQAE 221 >gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + +EL L +E F V G I L K ++ +ILD+ + + GF Sbjct: 10 IKILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMPGMDGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ + V +L+ ++D+V+GL GADDY+ KPF+ EEL+ARI A +R Sbjct: 70 EVCRMLK-KMDNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRNQF 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V G ++ K + + L+ EY++++ L L L+K M L+ ++ Sbjct: 129 PNLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR KL++ I T+ G GY Sbjct: 189 YDFGGEENIVEVYIRSLRDKLND--KNHQLIRTLRGSGYR 226 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+A + L+ E + V GE+ + + E ++LD+ L + G EV Sbjct: 5 ILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMDGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 R +R PV +L+ + +E++VRGL++GADDY+ KPF EEL+ARI A + R R Sbjct: 65 CRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSKRQ 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ G L+++L+A+T + LT +E+ ++ L +++ ++ Sbjct: 125 PTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVWGH 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V+I LR+KL AG YI TV G GY Sbjct: 185 DFDHGTSLLEVYISYLRRKLQE-AGCPGYIATVRGVGYRYEP 225 >gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 250 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ + + L+ + V G G L D IILDL L + G Sbjct: 3 RILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + P+ +L+ + +DK+ G +GADDY++KPF +EL+ R+RA++RRS Sbjct: 63 VCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRS 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + G I LT E+ ++ L R T++ Sbjct: 123 DRIPQAAKHGEILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++ I V I LR KL YI+TV+G GY L Sbjct: 183 LQEVWGYEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA ++ L ++ G+ ++ + D I+LD+ L + G+E+ Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRRS-- 119 R LR PV +L+ + ED++RGL+ GADDYI K PF+ E+VAR+++++RR+ Sbjct: 78 CRQLRT-FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNAL 136 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ V+G ++LT E ++++ + ++E LNHL Sbjct: 137 VQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHL 196 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + +D I LR+KL G N I+ V+G GY Sbjct: 197 HDDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 >gi|323528722|ref|YP_004230874.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] gi|323385724|gb|ADX57814.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 225 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ L+ ++V + + G DG+ L + ++D I+LD+ L + G+ Sbjct: 1 MRILVIEDEPKTGAYLKKGLEESGYSVDLANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ + D+VRGL+ G DDY+ KPF EL+AR+R + RR Sbjct: 61 AVLKVLR-ATHTTPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL ++++ + V+ RI LT +E+ +++LL R+ L++ ++++D Sbjct: 120 PRESELLAIGDLEMDINRRRVKRGATRIDLTPREFSLLQLLLRRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++V I +LR K+ + A I+TV G GYV+ D Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIQTVRGVGYVIEAKEPD 225 >gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 241 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 124/233 (53%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V G G L + D I+LDL L + GF Sbjct: 3 RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ + I+DK++G SGADDY++KPF+ EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + G I LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ + +++ I V I LR KL +I+TV+G GY L + ++ Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEE 235 >gi|296169906|ref|ZP_06851518.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895462|gb|EFG75164.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 257 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E + V + G + + D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMATFDKVSPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 T GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 152 QQTPPADETLKVGDLRLDTASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRSEILDR 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I+D++I LRKK+ +G + I TV G GY+LR Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRPPE 257 >gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] Length = 236 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ L+ + L++E + V G++ + + D ++LD L + G E Sbjct: 8 KVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWMLPGLSGIE 67 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + + PV +L+ +++RGL +GADDY+ KPF+ EL+AR+RAI R Sbjct: 68 LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 127 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ +GD+ ++ + V IHL E++++E L ++E L+ + Sbjct: 128 SPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLDGV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK L+ K+ I TV G GY + Sbjct: 188 WGHDVYVDERTVDVHVGRLRKALNK-GKAKDPIRTVRGAGYAFNDQ 232 >gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + IE+ML + + Y G + ++ + D ++LD+ + GF V Sbjct: 5 VLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R A + P+ L+ + EDKV+GL G DDYI KPF +EL ARI A++RRS + Sbjct: 65 CQSIR-AMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +V G + ++ A+ V V G I LT KE++++ L T+E L + Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + +D I LR KL A +I+TVWG GY Sbjct: 184 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGYRFDP 226 >gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory component QseB [Haemophilus influenzae R2846] Length = 221 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 GHHHSVIEQSGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] Length = 244 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +A I + L+ E + V G + + + DAI+LD L D G E Sbjct: 20 RVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+RA++RR Sbjct: 80 VLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAGA 139 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +R S+I GDL+++ D++ V G I LT E++++ L L+K L+ + Sbjct: 140 TRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDRV 199 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 200 WSYDFGGQANVVELYISYLRKKI--DAGREPMIHTMRGAGYVLK 241 >gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V V + GE G++ EFD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQIRSQKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + ++ ++ A+ V V G T KE+ ++ L+ N +KE Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 225 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L ++ L+ + V + G +G L ++ I+LD+ L I GF Sbjct: 1 MRILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+A+R + PV +L+ +ED+V GLQ GADDY+ KPF+ EL+ARI+A++RR + Sbjct: 61 AVLQAIR-RTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L ++ R+ LT KE+ ++ +L R+ L++ +++ Sbjct: 120 PQESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQVWE 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +++V I +LR K+ + + TV G GYVL + + Sbjct: 180 MNFDSDTNVVEVAIRRLRSKI-DDPFEVKLLHTVRGMGYVLEDRSW 224 >gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 229 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ F + + +++ D ++LD G + Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ EDKVRGL+ GADD+I+KPF+ +ELVARI+A++RR+ Sbjct: 64 LAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRRA 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ + V V + + E++++ ++E L+++ Sbjct: 124 APTCLEDPIDVQGLQLDPVSHRVTVGEQVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAV-TLSGHDRLIQTVRGAGYRF 225 >gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 117/228 (51%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++ L ++V+ G + +E+ D I+LD+ + + G+ V Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +R+R I+RR Sbjct: 75 CRAIR-KTSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGSL 133 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ + + V RI LT E+ ++ELL+ ++++ L Sbjct: 134 KPFNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLE 193 Query: 177 HLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV + +LR KL G I T+ G GY L+ Sbjct: 194 KVWGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLK 241 >gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + + ++ V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R + V + +LR K+ G I TVWG GY + + Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] Length = 235 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A L+S + + + G+ + K +D I+LDL L G++ Sbjct: 3 RILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115 + R +R P+ +++ + D +RGL GADDYI+KPF+ +LVAR+R+ Sbjct: 63 ICRKIRDEIDI-PILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKRYER 121 Query: 116 ------VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R + +AQ I D+ + V G + L +E++++ L+ N Sbjct: 122 LTTRHKEREEKENAQEQIKVEDVVIEPQTWRVWKAGEEVKLPHREFELLVFLAKNPNIVF 181 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +KE ++ + + V I +LR+KL + IETVWG GY L Sbjct: 182 SKEALFEKIWGFDYVSDAATVSVHINRLREKLEDDPRDPKIIETVWGAGYRL 233 >gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 229 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 121/224 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ +A + L + + V + E G++ + FD +ILDLGL + G Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R S P+ IL+ + DKV GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ D V +HLT KEY ++E+L + L++ +++ + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + P + + V + LR KL N IETV+G GY L N Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPN 224 >gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 246 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 12/229 (5%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA + L+ E F+V + G D + + + D +ILDL L I G EV Sbjct: 15 LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVEVC 74 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ + D + GL GADDY++KPF+ ELVARIRA++RR R A Sbjct: 75 RQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTVA 133 Query: 124 -----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G LS+++ + V + + LT E+ ++ LS R ++ Sbjct: 134 TPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSRR 193 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ ++DV I LR+KLS+ G Y+ TV G GY + Sbjct: 194 QLLEAVWGDSWGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGYRM 242 >gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 222 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD + I + LK E F G + + L + D I+D+ + + G Sbjct: 1 MRILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + L +I PV +L+ ++++DK +G +GADDY+ KPF +EL+ R+RAI+RR + Sbjct: 61 TLTKNL--VEIGVPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQ 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S I ++ ++ V+V L KE++++ +L R T++ + ++ Sbjct: 119 KTERSQIKIANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + I +LR +L I+TV G GY + E Sbjct: 179 YDYDGDDFTLTTHIKRLRSRLEEVNAQVK-IQTVRGIGYKIEE 220 >gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 221 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L + LK F V T G+ + E+ ++LDLGL + G Sbjct: 1 MRVLLVEDDALLGDGVRAGLKQAGFAVDWTQDGQAAKLALETEEYALMVLDLGLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A ++ PV +L+ ++ D+V GL +GADDY+ KPF+ +EL+AR+ A++RRS Sbjct: 61 DVLKWLRGANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + GD+ + V G + L +E+ + L L ++E HLY Sbjct: 121 GQVTLTLQHGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E ++V I LRKKL +A I T+ G GYV+ + + Sbjct: 181 WGEEVESNSVEVHIHHLRKKLGSA-----LIRTIRGVGYVIDKES 220 >gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN +VY GE+ + +FD ILD+ L DI G Sbjct: 4 KILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R + + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + L++N+ + G + LT E+ ++ +L R+ + ++ E Sbjct: 124 YNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+ + YI+TVWG GY + E Sbjct: 184 LFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234 >gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] Length = 229 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEE-AGHDKLIQTVRGAGYRF 225 >gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] Length = 233 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +I++++D+ + + L + ++V GE+ ++L + +E IILD+ L + GF Sbjct: 12 KIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSGF 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ IL+ S +D+++G G D+YISKPF+ + LVAR++AI R Sbjct: 72 DVAREIR-ETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ G + ++ A TV V G I L+ KE++++ + L++E LN ++ Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + ID + KLR K+ YI T+WG GY Sbjct: 191 DYDYFGDARTIDTHVKKLRAKIGEKGS---YIRTIWGMGYKFE 230 >gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621] gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621] gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A +I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225 >gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 6/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A +++ +LKS+ F V + D + ++ I+LDL L D Sbjct: 1 MRVLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ L+ + ++S S+ DK+ G++ GADDY+ KPFN E+VAR++A +RR++ Sbjct: 61 NEIQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G L + V G +I LT KE+++++LL+ R + ++E L ++ Sbjct: 121 GIKEVIRY-GKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIWT 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 + +++DV I LRKKL +I TV G GY + ++ E Sbjct: 180 DEYDVFDRVVDVHINSLRKKLGKD-----WIITVRGVGYKFSKKGDAQSSENER 228 >gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 220 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I+ L E + V G + FD ILD+GL + GF Sbjct: 1 MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL SGADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI + ++ + V + LT KEYQ++ L +T+E + LY Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E ++V I LRKK I T+ G GY++ E + Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSTLIRTIRGVGYLVEERS 220 >gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6] gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF] gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636] gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6] gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF] gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium] gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636] Length = 233 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++ +A IE+ LK++ + V LG++ ++ + FD +LD+ L DI GF+ Sbjct: 4 KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDIDGFK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R PV +L+ DK+ GL GADDYI+KPFN E+VARI+ +RR + Sbjct: 64 IVQKIR-ENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + L +N T + G I LT E+ ++ L+ RK + Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ + + I +LR+KL +I+TVWG GY + Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233 >gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I LK E + V+ G++ I K D IILD+ + + G E Sbjct: 7 KILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R T + L+ S ++ G GADDYI+KP L++RI AI+RR+ Sbjct: 67 ACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRN 126 Query: 120 RGHAQSLIVTGDLSVNLDAKT----VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +L +I L KE++++ LL+ + N T+E L Sbjct: 127 TAEDEIHEGNRLEVSDLVIDRDSFLAYRGTDKITLAKKEFELLYLLASKPNKVFTREQIL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + IDV I KLR+K+ Y+ TV G GY Sbjct: 187 KSIWEDSVVVTNRTIDVHIRKLREKIGEN-----YVATVKGVGYKFE 228 >gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] Length = 228 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+ + L L + + V + + I + + I+LD + G Sbjct: 4 KILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRSGIH 61 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ P+ +L+ SS ED + GL +GADDYI+KPF+ + L+ARI A+ RRS Sbjct: 62 LIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +LI L ++ A+ V V + L+G EY+++ L +E L+ ++ Sbjct: 122 YDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLMTHPEKVYRREQLLDFIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +D +I +LRK L YI+TV G GY + +D Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEPYGFE-RYIQTVRGSGYRFSNHFQD 228 >gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 223 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K A + L + F V V GE+G+ L +D IILD+ + G+ Sbjct: 1 MRILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR TPV L+ +I+D+V+GL+ GADDY+ KPF EL+ARIR+I+RR Sbjct: 61 SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+++ G R+ L+ KE+ ++ L R L++ + ++D Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+DV I +LR+K+ + + + TV G GYVL + Sbjct: 181 VHFDSDTNIVDVAIRRLRQKI-DDPFPQKLLHTVRGVGYVLEQ 222 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + I + L+ + F V G + + + + ++LD+ L D+ GFE Sbjct: 7 RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + P+ L+ + +D+VRGL G DDY++KPF+ EELVARIR I+RR+ Sbjct: 67 VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTGM 126 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL ++ D + V G + LT EY+++ L L LT+ L H++ Sbjct: 127 AEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++++ ++ +RKKL A G I+TV G GY LR Sbjct: 187 SYDFGGDARVLETYVSYVRKKL--DAHGPPLIQTVRGVGYALR 227 >gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] Length = 229 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ L+ + L E + V G +G + +D IILD+ L + GFE Sbjct: 4 KILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR TPV IL+ ++ E+ V+GL+ GADDYI+KPF EL++R+ A++RR+ Sbjct: 64 VLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRTGN 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +I GDL + + V + I L KE++++ L R +T++ Sbjct: 124 KEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +N ++ + +DV + LRKKL IE++ G GY L Sbjct: 184 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLEMNQQSVQ-IESIRGVGYKLV 232 >gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 233 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ L + L+SE + V G++ + D +ILD L + G E Sbjct: 4 RILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R PV +L+ ++VRGL +GADDY+ KPF+ EL+AR+RA+ R Sbjct: 64 LCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H +L+ GD+ ++ + V G +HL E++++E L ++E L+ + Sbjct: 124 KPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LRK ++ + I TV G GY E Sbjct: 184 WGQDVYIDERTVDVHVGRLRKAINR-GRQPDPIRTVRGAGYSFNE 227 >gi|41409458|ref|NP_962294.1| hypothetical protein MAP3360c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464131|ref|YP_883351.1| DNA-binding response regulator MtrA [Mycobacterium avium 104] gi|254822993|ref|ZP_05227994.1| DNA-binding response regulator MtrA [Mycobacterium intracellulare ATCC 13950] gi|296168959|ref|ZP_06850628.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|41398289|gb|AAS05910.1| MtrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165418|gb|ABK66315.1| DNA-binding response regulator MtrA [Mycobacterium avium 104] gi|295896428|gb|EFG76081.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 228 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947] Length = 219 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F + G G+ +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 61 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ + G ++++ + T + G + L KE+ ++ELL L + + LY+ Sbjct: 121 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V I LR+KL +A +I TV G GY L + Sbjct: 181 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTLGD 218 >gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305] gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305] Length = 221 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + I+L L +NF V G+ G + E+DA+ILDL L + G Sbjct: 1 MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTDGKLGFDALFSAEYDAVILDLSLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R TPV IL+ ++++++ G +GADDY+ KPF E+V R++A++RRS Sbjct: 61 DILKQWRKENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S IV GDL ++ ++V + G I LT KE++++EL + K+ L + + LY Sbjct: 121 QQVSSEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL + +I+TV G GY L Sbjct: 181 WDNEVSSNALEVYIHNLRKKLGKS-----WIKTVHGIGYKL 216 >gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 226 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + + +L+ E V V + G G+E D ++LD+ L + G E Sbjct: 3 RILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ S DKV GL+ GADDY++KP++ EL+ARI A++RR Sbjct: 63 VCRELRRESSV-PIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GD+ ++ D+ V V+G + + KE++++E+L LT+ ++ + Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV I ++R K+ I T+ G GY Sbjct: 182 WGADYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225 >gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 268 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + L+ + V + GE + L + D ++LD+ L + GF V Sbjct: 26 VLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+R Sbjct: 86 CRRLRAE-SCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q ++ GDL V+ + + V +G RI LT E+ ++ELL + + Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L+ R +++++DV++ +LR KL I TV G GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|310778431|ref|YP_003966764.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747754|gb|ADO82416.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 224 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + + E + V G +G+ K + D +ILD+ L + G Sbjct: 1 MKVLIVEDDLEIQQLVSYFFSKEGYGVETASDGLEGLRFLKKSKPDLVILDIMLPSLDGK 60 Query: 61 EVLRALR---VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 + +R + + +L+ + IED + GL+ GA+DY+ KPF+ EL+ R + + Sbjct: 61 NFTKIVRELPEEYGNPVIIMLTAKTEIEDVLEGLEIGANDYMKKPFDPRELILRSKKFLN 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ I + + D V +G + L+ KEY ++ LL K L++E L+ Sbjct: 121 NGAKVSKKYIFKDVVVDD-DRHLVTEEGVEVELSKKEYDLLHLLIRNKGLVLSREKILDK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +D++I KLR+K+ + + I+TV G GY L E Sbjct: 180 VWNTSYYAGDRSVDIYISKLREKIVSISKN---IKTVKGVGYKLEE 222 >gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 226 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +E+ +++E + + G + +E+ K ++ D IILD+ + + G + Sbjct: 6 ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQMDGIQA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDY++KPF+ ELVARI++ +RR + Sbjct: 66 CMKIREENNT-PIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQL 124 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + N+ + V V G I LT +E+ ++ L++ + L+ + Sbjct: 125 NNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIYT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I KLR+K+ YI+TVWG GY + Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230 >gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 265 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 11/228 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA + L+ E+F VT G D I + + + D +ILD+GL I G EV Sbjct: 35 LVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGLPGIDGLEVC 94 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ + D + GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 95 RQLRTFSDAY-VVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRIQQ 153 Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G L +++ A+ V + I LT E+ ++E LS R L++ Sbjct: 154 SAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSRRQ 213 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + DG ++DV I LR+KL + A YI TV G GY + Sbjct: 214 LLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGYRM 261 >gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V V + GE G+ +++ IILDL L + GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRRVRDEKNT-PIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228 >gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD +A L+ F + G G++ +D II+DL L G+E Sbjct: 3 RILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 ++R +R K+ PV ++S +K+RGL+ GADDY++KPF+ ELVARI++ +RR Sbjct: 63 IIREIR-EKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRRYER 121 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I+ L +N + V + G ++ +T +EY+++ L+ +KE L Sbjct: 122 LKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEHILV 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I K+RKK+ +IET+WG GY + Sbjct: 182 SIWGDDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGYRFNK 228 >gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273] gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] Length = 225 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 113/223 (50%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 ++L+++D+ + + L + + V GE +++ K + IILD+ + + G+ Sbjct: 5 KVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 V R +R P+ +L+ D++ G + G D+YISKPF+ + LVAR+ AI R S Sbjct: 65 GVCREIRKDSKI-PIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTS 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G + +N + T + G + L+ KE++++ + L++E LN ++ Sbjct: 124 AIGSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR K+ YI+T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKIGAKG---EYIKTIWGMGYKFE 223 >gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 223 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I ++ + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKEIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ + ++EDD +A + L+ F V G I + + +LD+ + Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 59 GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G E+ R +R ++ TPV L+ +S DK+ GL GADDYI+KPF+ EL+ARI+A++ Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 117 RRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR +++ GD+ ++ A T+ V+G+ + T E++++E L+ T++ L Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + +DV++ ++R+K+ Y++TV G GY Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >gi|325478552|gb|EGC81664.1| putative sensory transduction protein RegX3 [Anaerococcus prevotii ACS-065-V-Col13] Length = 237 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K+++ ++ L + +NV+ G + +++ E D IILDL L + G +V Sbjct: 6 ILIVEDEKSISDIVKNYLIRDGYNVFQAFDGLEALKIFDNEEIDLIILDLMLPKMSGEDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R PV I S D++ GL+ GADDY++KPF+ +ELV R++A++RR + Sbjct: 66 IKNIRNKSKV-PVIITSAKVEEIDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEKY 124 Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G L ++L G + LT E+ +I+ L N T++ + Sbjct: 125 NIPRADIIKTSDGRLLMDLKYNRFLKDGEEVFLTKNEFSIIKTLFSSPNKIFTRDEIIEL 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID I +R+K+ + YI+T++G GY Sbjct: 185 TFGLDYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227 >gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 232 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 7/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L+ E F V+ G + +E+ + I+D+ + + G + Sbjct: 4 ILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIMMPRMDGIRL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 ++ +R + PV LS S DK+ GL GADDYI+KPFN EL+AR+++ +RR Sbjct: 64 VKEVR-RFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYTTL 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L ++ ++K V G I LT EY ++ L K + E H Sbjct: 123 GSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIYEH 182 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I V I +R+K+ +++ VWG GY + + Sbjct: 183 IWNESVGGRSDNTIAVHIRHIREKIEINPKDPKFLKVVWGVGYKIEDEV 231 >gi|212637427|ref|YP_002313952.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212558911|gb|ACJ31365.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 245 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 2/230 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED++ LA + L LKS N V + ++ + D I++D L D G + Sbjct: 16 ILLIEDEQDLAKLVMLNLKSMNHAVIHCVTLQQASQVIATKQIDLILMDRMLPDGDGITL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P +L+ S D V GL+SGADDY+ KPF+ EL AR++A++RR Sbjct: 76 CQQIRQDGNELPCMLLTAKDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRGTQI 135 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +S+N + + V + LT +E+ ++ L+ ++ L ++ Sbjct: 136 AHQDESLEFNGISINCNTREVIAFNETLELTAREFDLLLYLAQHPKQVFSRMQLLEAVWG 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++ I +LR KL+ A + ++TVWG GY A Sbjct: 196 YSYSGYEHTVNSHINRLRNKLARNACTTDLVKTVWGVGYKFAPPANQAAS 245 >gi|290770180|gb|ADD61939.1| putative protein [uncultured organism] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ EEL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630] gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile CD196] gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile R20291] gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile QCD-32g58] gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile] gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile CD196] gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile R20291] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + SIE+ LKSE F +Y G +E+ + I++D+ + + G + Sbjct: 4 ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ ++S S DK+ GL GADDYI+KPFN EL+AR+++ +RR Sbjct: 64 TVKIREERNI-PIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVTL 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L +N K V++ G I +T EY++IELL K + + Sbjct: 123 GNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ +++ VWG GY + + Sbjct: 183 KVWNEESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIEK 229 >gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+++A L+ F + G G++L EFD I+LD+ L GF+ Sbjct: 3 KILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLPGKDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R A P+ +++ K++GL GADDYI KPF+ ELVAR+ A + R Sbjct: 63 VCQEIR-AVKEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYER 121 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +S I+ G + + L A+ V + + + KE++++ L+ N +K+ Sbjct: 122 LTTIEKNSDNEKSSIIIGRIKILLKARRVYIGENEVKFANKEFELLMFLASNPNIVFSKD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ + I V I ++R+K+ + YIETVWG GY Sbjct: 182 TLLDRIWGEESLGDSSTITVHINRIREKIELDSSNPEYIETVWGAGYRF 230 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L ++ L++E F V + G + ++L D ++LD+ + + G+E Sbjct: 4 KVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 V L P+ +L+ +S +DK+RG Q G DDY++KPF+ EL ARIRAI R Sbjct: 64 VCSRL-HELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQR 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ I G+ ++LD + + + I LT E++++E L+ K ++++ Sbjct: 123 SLPAQRKNQITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +I LR+K+ + +I TV G GY L Sbjct: 183 QVWGVYLSSDRSAVRRYIWLLRQKIESDPTHPRWIRTVRGYGYRL 227 >gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA ++ L+ ++ V V G+ G + +D I+LD+ L + GF Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++++R K TPV +L+ M S++DK+ G ++GADDY+ KPF EL+AR+RA+ +RS Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++L+ K RI LT KE+ +++ L + +++ + Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +IDV++ LRKK+ I TV G GY+L+E+ Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPT-KLIHTVIGMGYMLKED 230 >gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 223 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD+ L + L +E F V V GE G+ + +D ++LD+ L + G+ Sbjct: 1 MRVLLVDDDRRLVGLLARGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A + TP+ +L+ D+ GL +GADDY++KPF+ LVAR+RA+ RR Sbjct: 61 RVCARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARLRALARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL V+ + +G I LT KE+ ++E L+ RK +TK+ L ++D Sbjct: 121 AGRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKDEVLAGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +++V++ LR+K+ + G I TV G GY L E+ Sbjct: 181 SAREADHNLVEVYVSALRRKI-DLPFGTFTITTVRGVGYRLEES 223 >gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD A+ + L L+ +N +V T GE+G++ + + D ++LDL L + G E Sbjct: 3 RVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMTGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ + + D V GL++GADDY+ KP L ARIRA++RR+ G Sbjct: 63 VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + GDL+V+ TV + G I L E +++ LS +++ L Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + +++D + +LR K+S YI TV G GY Sbjct: 183 EAVWEHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGYRFSAP 231 >gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 676 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+++A + +L E++ V V G G +L + +D IILD+ L ++ G Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + + LR + + PV ++ + +K+ GL +GADDYI+KPF EEL+AR+RA+ R Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L + ++++ + + +++ LT KE+ M+EL ++E +++L+ Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + + LR+KL + IETV+G GY L+ Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKP 224 Score = 66.9 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL ++DD L +++ L EN+ + D + + + D ++LD+ + G E Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R A P+ + + + ++G D+ I K + +L+A + ++RS Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 R 120 Sbjct: 660 Y 660 >gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL LK+EN+ V+ ++ ++ E D ILD+ L G Sbjct: 4 KILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGASGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ S DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N++ + + LT E+ ++ +L K ++ E Sbjct: 123 YSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQIF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K++ YI+TVWG GY + + Sbjct: 183 HEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKIEK 231 >gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51] gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 7/229 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD +A L+ + V + G G++ +D +I+DL L + G Sbjct: 1 MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+++ +R P+ +LS S DK+RGL GADDY++KPF+ EL+ARIR+ ++R Sbjct: 61 FEIIKEVRKKLEI-PIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRY 119 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + +I L +N + V V G + T KEY+++ + N +KE Sbjct: 120 ERLTGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + L+ ++ + V I K+RKK+ YIETVWG GY Sbjct: 180 FDLLWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFNP 228 >gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 226 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSE--NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+IL+++D+ ++ + I + L+ E + V G + +E D +ILD+ L D Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 61 GYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 120 Query: 119 SRGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I G++ + + V V G I LT +E+ + +L ++ Sbjct: 121 VKKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDEL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 181 LEKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 224 >gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX] gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX] Length = 232 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+A+ S+E L+ E + G + + D +ILD+ + + G V Sbjct: 7 VLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVMMPGVDGLGV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ +L+ D+V GL +GADDY+ KPF +EL+ARIRA++RR+ Sbjct: 67 CRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAPT 126 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI GDL ++ A+ V G + L+ E+ ++ELL+ L + Sbjct: 127 TGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTIYDR 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ PE K + V+I LR+KL I+TV G GY LR Sbjct: 187 IWGYDFGPESKNLAVYISYLRRKLEPEGTTP-LIQTVRGVGYTLRP 231 >gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 234 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L +E ++V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ GD+ ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227 >gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 236 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 110/226 (48%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 ++L+++D++ + + + LK ++V G + +E + + D I++D+ + + G Sbjct: 9 KVLIVDDEQDIRTLLNIYLKRLGYDVVEAADGVEAVETVRADKDIDLIVMDIMMPKLSGT 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R S PV L+ + D+ G DD+++KPF + E ++ A++RR + Sbjct: 69 EACQQIR-EFSSIPVLFLTAKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALIRRYK 127 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+++++ + V G I LT KEY ++ L + + E Sbjct: 128 VYRGKSETDPKNISVGNINIDSFKRIVIKNGEVIKLTDKEYALLFFLVEHRGKPWSLEAL 187 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + P + V I +LR+K+ + + I T++G+GY Sbjct: 188 YENIWQEKYLPSSSNTVMVHILRLRQKIEDNSAQPEIIRTIYGKGY 233 >gi|253680891|ref|ZP_04861694.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562740|gb|EES92186.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 231 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ +++ I+L+L+ ++F V GEDGI+ +ILD+ L I GF+ Sbjct: 6 KVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK++GL+ GADDY+ KPFN EL AR+ +++RR Sbjct: 66 VCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRRMSF 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V+L++K +++LT KE+ ++++ +L+++ L+ Sbjct: 126 SNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + KI+DV I +LR KL + Y++TVWG GY+ +E Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIWKE 230 >gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B str. Eklund 17B] Length = 223 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 7/225 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ + I L + FN++ GE+G+ + D IILD+ + + Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 G E+L LR + PV L+ EDK+ G Q GADDY++KPF+ + LVA+++A + R Sbjct: 61 GLEMLEKLR-EVSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S+ LSVN + V+V I L+ KEY+++ L ++ L+++ L++ Sbjct: 120 TREDLDSSIQNFNGLSVNQLSHEVKVNDKIILLSPKEYELLIYLINNESIALSRDNILDN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +D I +LR+KL + + YI TV G GY Sbjct: 180 VWGIDYYGDIRTVDTNIKRLREKLLDKSS---YIVTVRGSGYKFE 221 >gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445] gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445] Length = 235 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R S Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + +P+ +IDV I +LR K+ + TV G GY+L+ ++ Sbjct: 181 NYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLKAGRGKQSA 230 >gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894] gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894] Length = 252 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 19 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 79 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 138 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 139 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 199 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 249 >gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD L I + L+ E + V G +EL + D +ILD+ + ++ G E Sbjct: 6 ILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVMMPEMDGVEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV +L+ ED ++GL GADDY+ KPFN EL ARIRA++RR Sbjct: 66 CTKLR-EFSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRRVPPV 124 Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G + ++ + V V+G + LT EYQ++ +L+ + + + L ++ Sbjct: 125 YRPLHAGEGQIQIDQQKREVLVRGEVVDLTPTEYQLLLILTEQAGKVVAHDTLLRAVWGQ 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V+I LR+K+ + + T WG GY L Sbjct: 185 EYSRDNDYLKVYIWHLRRKIEQDPRNPSLLLTDWGVGYRL 224 >gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 219 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L + LK E + V G+ E K ++ I+LDL L D+ G Sbjct: 1 MRLLLVEDDEILGEGLVEGLKMEGYAVDWLTNGKLADEALKINSYELIVLDLNLPDMEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ALR K TPV +L+ ++ D+V GL SGADD++ KPF +E+ AR+RA+ RR+ Sbjct: 61 DILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVCARLRALARRNE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I + ++ + V ++ L+ KE++++ L +++ LY Sbjct: 121 GRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSNIGRVISRARLEESLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E ++V I LRKKL + I TV G GY++ E+ Sbjct: 181 WDSDVESNTVEVHIHHLRKKL-----DPSIIRTVRGVGYIIDED 219 >gi|227514441|ref|ZP_03944490.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|227087191|gb|EEI22503.1| response regulator [Lactobacillus fermentum ATCC 14931] Length = 250 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 15/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIP 58 M+IL+IED++++ + + K E ++ GE+ +E D ++LDL L Sbjct: 11 MKILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 70 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R + P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 71 GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 130 Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 + ++ I T +N + + G+ I +LT KE+ +++ L+ + Sbjct: 131 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 190 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 T+E L ++D + + +D I KLR+K+ G I+TVWG GY ++ D Sbjct: 191 VFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSEAD 248 Query: 228 E 228 + Sbjct: 249 D 249 >gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D I++D L G Sbjct: 24 MKILIIEDDLEAAVYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRRDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ R+ Sbjct: 84 SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 144 TPDQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDYSQP-LLKTIRGAGYMIKDEG 248 >gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C] Length = 222 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + +K + GED L +DA+ILD+GL+ + G Sbjct: 1 MRILIVEDDRDLNHQLAKAVKDAGYVFDSAFNGEDAYFLGSTESYDAVILDIGLSCMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ R S PV +L+ DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS Sbjct: 61 QVVERWRKEGYSMPVLMLTARDCWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++ V ++G I LT E++++ L + ++K + HLYD Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIEGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VFI +LRKKL + IETV G GY ++ Sbjct: 181 QDFDKDSNTIEVFIRRLRKKLGVDS-----IETVRGLGYRIK 217 >gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 230 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ + ++ L V E ++ K D I+LD L + G ++ Sbjct: 5 ILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWMLPGMSGIDL 64 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR P+ +L+ DKV GL +GADDYI+KPF+ ELV+RI+A+ RR+ Sbjct: 65 CRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L ++ + V+ +G + L E++++ T+ L+ ++ Sbjct: 125 PQMTEEAVEVAGLRLDPVSHRVQGKGIALELGPTEFRLLHFFMTHPERVYTRPQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LR L +G ++TV G GY Sbjct: 185 GDDVFVEERTVDVHIRRLRLALEP-SGHAALVQTVRGSGYRFSTEV 229 >gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120] gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V + G + + + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF +ELV RIRA++RRS Sbjct: 61 FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] Length = 230 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL +++ + G + LT KEY ++ELL + L++ + Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227 >gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + L+S +F V ++ +L D I+LD L G E+ Sbjct: 4 ILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRSGLEL 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + L+ + P+ ++S ED+V+GL +GADDYI+KPF+ E+VAR++A+ R Sbjct: 64 AQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLRRAK 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I G L ++ V G I + EY+++ + ++ L+ ++ Sbjct: 124 PDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRSQLLDQVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +DV + +LRK L G ++TV G GY + Sbjct: 184 GDQVYVEERTVDVHVRRLRKALEP-TGHDRLLQTVRGVGYRFSD 226 >gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603] gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL + D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 230 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD A A + L F V D G DG+ +D +ILD L + G Sbjct: 4 KILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRMLPGMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL A+R A I TPV ILS + + ED+V+GL+ G+DDY++KPF EL+AR+R ++R +G Sbjct: 64 VLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQG 123 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + DL ++L ++ V G I L +E++++E L +T+ M L Sbjct: 124 RSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLEG 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +IDV + +LRKK+ + TV G GY L Sbjct: 184 VWDYHFDPGTNVIDVHVSRLRKKIDEGQARP-LLHTVRGSGYRL 226 >gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD+ LA L+ V + G +G+ + +D ++LDL L G Sbjct: 16 IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR P+ +++ D+V GL++GADDY+ KP++ EL+ARIRA VRR Sbjct: 76 EVCRELRTRSDV-PIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 134 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + + G L ++ + T + G + LT E+ ++ +L+ R L++E L+ Sbjct: 135 GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDL 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + DE + IDV I +LR+KL ++TV G GY+L Sbjct: 195 IKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238 >gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W] gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W] gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 239 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G + D ++LD+ L D G E Sbjct: 7 RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R + PV L+ DK+ GL G DDY++KPF+ +ELVARIRA++RR+R Sbjct: 67 LCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTRR 126 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + T L+ + +V G + L EY+++ L + N L++E L+ Sbjct: 127 EQAADTGTAPLTFADLTLDETTHSVTRAGQHVELAPTEYRLLRYLLVNPNRVLSREQILD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D ++D ++ LR+KL A G I T G GY LR+ Sbjct: 187 AVWDTDYRGGATVVDQYVSYLRRKL--APYGPPLIHTQRGFGYALRD 231 >gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+EL + D ++LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G++ ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221 >gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 10/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + + LK+E + V+ + G++G++ K + D IILD+ + + G E Sbjct: 7 KILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R T + L+ + G +GADDYI+KP LV+++++++RR+ Sbjct: 67 ACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRRN 126 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +G +++ GDL ++ D + + I L KE++++ LL+ + +E L+ Sbjct: 127 VLPKGDEGNVVKIGDLIIDKDQYKIVFKKEEIILPRKEFELLSLLTSKPGKVFKREEILD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + IDV I KLR+KL + + +TV G GY Sbjct: 187 VVWGNEVIVGGRTIDVHIRKLREKLGDDSF-----KTVKGVGYK 225 >gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator [Dechloromonas aromatica RCB] gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + L F V + G DG+ L +D +LD+ L I G+ Sbjct: 1 MKILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +VL+ +R A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L+ DL ++L + V G +I LT KE+ ++E+L R+ L + + + ++ Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +I+V I +LR K+ + I TV G GYVL Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKV-DDGFEPKLIRTVRGMGYVLE 222 >gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 234 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 ++L+ ED+ ++ + + L + V + GED ++ + E FD +LD+ + I G Sbjct: 3 KVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R + +LS S DK+ L SGADDYI+KPF+ EL+AR+ A+ RR Sbjct: 63 MQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRRV 122 Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A I +G +NL ++TV G +I LT EYQ++E +N L + Sbjct: 123 NRSAVKPEEASTITSGPFVLNLKSRTVLKNGRQIDLTQVEYQIMEYFFKNQNAALDRSSI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LNH++ + KI+DV I ++R K+ + YI T+WG GY Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGYKW 229 >gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ ++ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + +E+ L++E F+ G + + +LD + I G +V Sbjct: 8 ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPIITGLDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +++ ++D+V L++GADD+ISKPFN E++AR++A++RRS Sbjct: 68 CRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRSTAI 127 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + GDL +N + G + LT +E+ ++E L++ + +++ Sbjct: 128 SPDQLNFGDLHLNGAERRCSYGGQELTLTVREFDLLECFLRNPRQALSRTQLIQNVWGED 187 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++DV++ LR+KL I+T+ G G+ LR + Sbjct: 188 YFGDDNVVDVYVRYLRRKLEEV-KPDRIIQTIRGIGFALRVDE 229 >gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L++E F+V G + ++ + + ++D+ + ++ GFE Sbjct: 3 RILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 63 LCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSNQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ I G ++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 123 ASEVKINIGKITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQR 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 183 DYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM 16841] gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM 16841] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D+K + ++++ L ++ + V+ G + +E+ K + +++D+ + ++ G Sbjct: 3 RILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKEDIHLVLMDIMMPEMDGIT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + PV +L+ S DKV GL GADDY++KPFN EL AR+++ +RR Sbjct: 63 AMLKIR-EVSNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRRYMK 121 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 IV G + +N K V + G ++ LT EY +++LL + Sbjct: 122 LGGGTVRPDTIVIGGIELNDVTKEVTLDGDKVQLTRTEYDILKLLMQHPGQVFSPNEIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I LR+K+ +++ VWGRGY + Sbjct: 182 KVWNDNPFRNENTVAVHIRHLREKVEYNPAEPRHLKVVWGRGYKME 227 >gi|153011101|ref|YP_001372315.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562989|gb|ABS16486.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 233 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ + + L +E + V G + E + D ++LDLGL D G Sbjct: 7 KILVVDDEPAIRKLLRVGLTTEGYTVVEAVNGGEADERITTEKPDIVVLDLGLPDTDGHA 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R ++ P+ +LS + VR L+ GADDY+ KPF +EL AR+R R Sbjct: 67 LLQRWRETGVTLPILVLSSRTDEAGIVRALEEGADDYVPKPFGMKELAARLRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L + L+V+L + V++ G I L+ KEY ++ LL LT L+ ++ Sbjct: 127 QQGEKPLFQSDGLTVDLVRRIVKLNGEEIKLSPKEYDILRLLVQHAGKVLTHHFILSQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +++ +LR+K+ + +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228 >gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+A+ H++E L E + V G + + D ++LD+ + I G +V Sbjct: 15 VLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDGLQV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ +L+ + D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ Sbjct: 75 CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGNA 134 Query: 123 AQSLIVTGDL----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +++ A+ + LT E+ ++ELL L Sbjct: 135 SLDAPKEEPSPSGQVSVAGLRMDVQARRAWRGEREVELTRTEFDLLELLVRNAGIVLDHT 194 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ P K + V++ LR+KL + G I TV G GYVLRE+ Sbjct: 195 TIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DQPGAPALIHTVRGVGYVLRED 245 >gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] Length = 222 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + I ++ + D G D + + K D +ILD+ + ++ GF V Sbjct: 4 ILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIMMPNLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R + P+ +L+ S +DK++G GADDY++KPF+ + L+A+ A++RRS Sbjct: 64 CKIAR-EMSNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSLL 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I G +S+ + V V G I LT KEY+++ + ++E LN ++ Sbjct: 123 PADTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWGYD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LR+KL + I T+ GY Sbjct: 183 FEGTTRTVDTHIKTLRQKLGDEGKH---IVTLIRSGYKFE 219 >gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 248 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + + L + VY G + +++ D IILD+ + + G+ V Sbjct: 15 ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVMMPKLDGYGV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +A+R P+ +L+ +S ++D++ GL+ GADDY+ KPF+ +EL +R+R I+RR Sbjct: 75 CQAVR-KTSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSPL 133 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G + ++ D + V R+ LT KE+ ++ LL+ R T++++ L Sbjct: 134 KAFNHQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELLQ 193 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + +DV + +LR+KL G I TV G G+ L+ Sbjct: 194 KVWEYNKDSIVDTRTVDVHMSRLRQKLKEKLGETILIHTVRGVGFTLK 241 >gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] Length = 236 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD ++ + +++ + V G + + + D ++LDL L + G Sbjct: 9 KILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGMTGEA 68 Query: 62 VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R K PV ILS S++DKV+ L+ GADDYI+KPF+ EE++AR+ A +RR Sbjct: 69 VLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRRYT 128 Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ++ +LS+ ++ VEV G + LT EY ++ LL ++E Sbjct: 129 KEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G E ++V + LRKK+ A ++YI+TVWG G+ L Sbjct: 189 YEQVWKGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236 >gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 231 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + + L +F+V GE+ + + + IILD+ + + G+ Sbjct: 5 KILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ +L+ S D++ G + G D+YI+KPF+ + LVAR+ AI R + Sbjct: 65 QVCREIRKESKV-PIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTN 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + A + G +++N A V G + L+ KE++++ L++E LN+++ Sbjct: 124 QISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + + ID + KLR K+ NYI T+WG GY ++DE Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGEKG---NYIRTIWGMGYKFEVESQDEKA 231 >gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I++G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 222 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED++ + + F+V + G +++ K D +ILD+ + + G+ Sbjct: 1 MKILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMIPYLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +++R P+ +L+ EDK+ G + GADDY++KPF+ + LVA+++A+++RS Sbjct: 61 TVCKSIR-QNSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSV 119 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +N + V++ G ++L+ KEY ++ + + L++++ L+ + Sbjct: 120 VEQKETNIKNYNGLEINKLSNEVKIDGDIVNLSPKEYDLLIFFANNIDIVLSRDIILDKV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E ++ +D + +LR+KL A +I TV G+GY + Sbjct: 180 WGFDYEGGLRTVDTHVKRLREKLKEKA---KFIVTVRGKGYKFEVD 222 >gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573] gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603] gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385] gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603] gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573] gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385] Length = 240 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I GD +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 233 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 12/230 (5%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 M+ IL+++D++ + + I+ L+ E ++V+ G + IE D +ILDL L Sbjct: 1 MKTDGRNILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLMLP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 D+ G E+ + +R+ P+ +L+ + D++ GL GADDY+ KPF+ +ELVAR+ AI Sbjct: 61 DLSGEEICKKIRIESQV-PILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAI 119 Query: 116 VRR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RR + DL+V+L+ V +G I LT EY+++ LLS T+ Sbjct: 120 WRRLGEDTVKANILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + + E + ID I +R+K+ YI TV+G GY Sbjct: 180 EELVTKILGYDYEGYDRTIDTHIKNIRQKI--DDEQNKYIVTVYGTGYKF 227 >gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676] gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185] gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550] gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W] gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W] gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550] gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185] gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676] gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A +I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225 >gi|15610382|ref|NP_217763.1| two component sensory transduction transcriptional regulatory protein MTRA [Mycobacterium tuberculosis H37Rv] gi|31794426|ref|NP_856919.1| two component sensory transduction transcriptional regulatory protein MTRA [Mycobacterium bovis AF2122/97] gi|121639135|ref|YP_979359.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663109|ref|YP_001284632.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium tuberculosis H37Ra] gi|148824448|ref|YP_001289202.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis F11] gi|167966684|ref|ZP_02548961.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis H37Ra] gi|215405258|ref|ZP_03417439.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 02_1987] gi|215413124|ref|ZP_03421825.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 94_M4241A] gi|215428728|ref|ZP_03426647.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis T92] gi|215432210|ref|ZP_03430129.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis EAS054] gi|215447549|ref|ZP_03434301.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis T85] gi|218755032|ref|ZP_03533828.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis GM 1503] gi|219559305|ref|ZP_03538381.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis T17] gi|224991628|ref|YP_002646317.1| two component sensory transduction transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800288|ref|YP_003033289.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 1435] gi|254233859|ref|ZP_04927184.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis C] gi|254365870|ref|ZP_04981915.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis str. Haarlem] gi|254552349|ref|ZP_05142796.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188294|ref|ZP_05765768.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CPHL_A] gi|260202407|ref|ZP_05769898.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T46] gi|260206597|ref|ZP_05774088.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis K85] gi|289444827|ref|ZP_06434571.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T46] gi|289448934|ref|ZP_06438678.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CPHL_A] gi|289555524|ref|ZP_06444734.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 605] gi|289571473|ref|ZP_06451700.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T17] gi|289575966|ref|ZP_06456193.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis K85] gi|289747064|ref|ZP_06506442.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis 02_1987] gi|289751940|ref|ZP_06511318.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T92] gi|289755369|ref|ZP_06514747.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis EAS054] gi|289759386|ref|ZP_06518764.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis T85] gi|289763434|ref|ZP_06522812.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis GM 1503] gi|294993814|ref|ZP_06799505.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis 210] gi|297635899|ref|ZP_06953679.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 4207] gi|297732896|ref|ZP_06962014.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN R506] gi|298526722|ref|ZP_07014131.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 94_M4241A] gi|306777575|ref|ZP_07415912.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu001] gi|306782296|ref|ZP_07420633.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu002] gi|306795007|ref|ZP_07433309.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu005] gi|306799205|ref|ZP_07437507.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu006] gi|306805053|ref|ZP_07441721.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu008] gi|306809239|ref|ZP_07445907.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu007] gi|306969342|ref|ZP_07482003.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu009] gi|306973694|ref|ZP_07486355.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu010] gi|307081403|ref|ZP_07490573.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu011] gi|313660228|ref|ZP_07817108.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN V2475] gi|2072713|emb|CAB08347.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA [Mycobacterium tuberculosis H37Rv] gi|31620022|emb|CAD95366.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA [Mycobacterium bovis AF2122/97] gi|121494783|emb|CAL73264.1| Two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599388|gb|EAY58492.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis C] gi|134151383|gb|EBA43428.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis str. Haarlem] gi|148507261|gb|ABQ75070.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium tuberculosis H37Ra] gi|148722975|gb|ABR07600.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis F11] gi|224774743|dbj|BAH27549.1| two component sensory transduction transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321791|gb|ACT26394.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 1435] gi|289417746|gb|EFD14986.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T46] gi|289421892|gb|EFD19093.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CPHL_A] gi|289440156|gb|EFD22649.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 605] gi|289540397|gb|EFD44975.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis K85] gi|289545227|gb|EFD48875.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T17] gi|289687592|gb|EFD55080.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis 02_1987] gi|289692527|gb|EFD59956.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T92] gi|289695956|gb|EFD63385.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis EAS054] gi|289710940|gb|EFD74956.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis GM 1503] gi|289714950|gb|EFD78962.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis T85] gi|298496516|gb|EFI31810.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 94_M4241A] gi|308214117|gb|EFO73516.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu001] gi|308325047|gb|EFP13898.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu002] gi|308336786|gb|EFP25637.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu005] gi|308340620|gb|EFP29471.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu006] gi|308344561|gb|EFP33412.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu007] gi|308348357|gb|EFP37208.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu008] gi|308353194|gb|EFP42045.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu009] gi|308356934|gb|EFP45785.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu010] gi|308360935|gb|EFP49786.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu011] gi|323718115|gb|EGB27297.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CDC1551A] gi|326902526|gb|EGE49459.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis W-148] gi|328460023|gb|AEB05446.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 4207] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 227 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ +F + V G+ G+E FD +ILD+ L + GFE Sbjct: 3 KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 V + +R AK P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A R Sbjct: 63 VCKQIRAAKDI-PIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + +I L+++ A+ V V + T KE+ +++ + N L+KE Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+KL Y+ETVWG GY Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRF 225 >gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + GE G++ EFD ILDL L + GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R +TPV ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKIR-ETKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228 >gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +EL LK E + V + + G G+E + D ++LD+ L + G E Sbjct: 3 KILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA----IVR 117 V R +R+ P+ +L+ + DKV GL GADDY++KPF EEL+ARIR + Sbjct: 63 VCRRIRMESQV-PIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S Q ++ G+L +NL + + + LT KEY+++E L KN LT+E LN+ Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + ++DV+I LR+K+ + G + I TV G GY++R+ Sbjct: 182 VWDYEYFGDTNVVDVYIRYLRQKI-DDKYGVHLISTVRGVGYIIRDE 227 >gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 233 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 7 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 67 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 126 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 186 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 231 >gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 230 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +E+ +++E + + G + +E+ K ++ D IILD+ + + G + Sbjct: 6 ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQMDGIQA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDY++KPF+ ELVARI++ +RR + Sbjct: 66 CMKIREENNT-PIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQL 124 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + N+ + V V G I LT +E+ ++ L++ + L+ + Sbjct: 125 NNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIYT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I KLR+K+ YI+TVWG GY + Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230 >gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + +++E + V G++ + +ILD+ + + G Sbjct: 1 MKILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV+R +R PV ILS + DK++GL GADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIREVRKESQI-PVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L + D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 EHNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ +A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 10 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 70 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 129 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 230 >gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 236 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E ++ + GE ++ ++ + I+LDL L + G++ Sbjct: 6 RILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRT-TSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +L VNL +V +GH + + KE +++ L+ N T+ Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L+H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIRDDENWA--LSTVWGIGYKFE 233 >gi|229085934|ref|ZP_04218158.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228697370|gb|EEL50131.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E + V+ + G+ + + ++D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLALVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFVSGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ + V+ I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR + S I+TV G GY L Sbjct: 181 IDFEGDERTVDVHIKRLRDRFSKRTDDFQ-IKTVRGLGYKLE 221 >gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803] gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V + GEDG+ L +DAI+LD+ + ++ GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38] gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 114/228 (50%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D++ + + L E + + G++ + + K II+D+ + ++ G Sbjct: 6 IKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMPEMDGM 65 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ S +V G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQALLRR 125 Query: 119 SRGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + G++ +N + + +G I L KE+++ LL+ + T+E Sbjct: 126 FKDSEGSSSSTTLNVGNIEINREEYKIVKEGVEIILPRKEFELFYLLATKPGKVFTREEI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + IDV I KLR+K+ + + +T+ G GY + Sbjct: 186 LDKVWGNEVVVGGRTIDVHIRKLREKIGDD-----FFKTIKGVGYKIE 228 >gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11] Length = 219 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L EN+NV G+DG++ + +D IILDL L I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRKIRQQQST-PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++++ +A V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 123 DIIDVNG--ITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPYDRD-KMIETVRGVGYVIR 219 >gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 234 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A +E+ L S+ + V+ + ++G+++ ++LD+ + + G Sbjct: 4 INILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +LS S+ DK+ GL +GADDY+ KPFN EL AR+++ +RR Sbjct: 64 EMCRKIR-ETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122 Query: 121 GHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 I L +N D V V I LT E+ ++ LL+ + Sbjct: 123 QLNPQSSALQSAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFST 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++++ V V G +G+ FD I+LD+ + ++ GFE Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + ED+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 65 VSKMIRSQSNV-PIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ ++ +++DA V V I LT KE+++++LL + LT+E + ++ Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IID I LRKKL+ YI+T+ G GY + E Sbjct: 184 YDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 221 >gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + + N+ G G+ L +D +ILD L + G Sbjct: 1 MKILLVEDDTTTIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++ + G+L + L + V + G + L KE+Q+++ L N +++ + ++ Sbjct: 121 SQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LRE Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRE 223 >gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 252 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 13/230 (5%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D++ LA + L+ E+F V V G D + L + + D ++LDLGL + G EV Sbjct: 20 LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIEVC 79 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ S+ D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 80 RQLRTFSDAY-VVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKAP 138 Query: 124 QS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 V G LS+++ + V + + LT E+ ++ +LS R ++ Sbjct: 139 VYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFSR 198 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++DV + LR+KL + Y+ TV G GY + Sbjct: 199 RQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 248 >gi|49474036|ref|YP_032078.1| two-component response regulator [Bartonella quintana str. Toulouse] gi|49239540|emb|CAF25897.1| Two-component response regulator [Bartonella quintana str. Toulouse] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD +E +V V G+ G L + +D +++D L G Sbjct: 1 MKILVIEDDHETGRYLEKAFGESGHSVDVAYDGDTGYALAETENYDIMVVDRMLLHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TPV ILS + + D+V GL++G DDY++KP+ EL+AR+ R++ Sbjct: 61 SIIAELRAKGNKTPVLILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ G+L ++ A TV+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDKNIVLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV I +LR K+ + TV G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAP 224 >gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD + + L++ + +V GE + D ++LDL L I G E Sbjct: 3 RVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R LR P+ +L+ + S D++ GL+ GADDY+ KPF+ ELV R+ ++ R Sbjct: 63 VCRRLR-QAGEVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTGH 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + V+ D + G + LT +E+ ++ L T+E L H++ Sbjct: 122 SGEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V + +LR+K+ + + TVWG GY Sbjct: 182 WT-IGDRSTVTVHVRRLREKIESDPTRPERLVTVWGVGYRWEP 223 >gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + +E L + V G DG+ + + D ++LD+ L D+ GFE Sbjct: 12 RILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVMLPDLDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + TP+ L+ + + D++ GL +G DDY+ KPF+ EE++ RIRAI+RR+ Sbjct: 72 ITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTGH 131 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 GDL ++ A V G I L+ E++++ LL L+K Sbjct: 132 DVPYGAGEDETEVLRYGDLELDERAHEVHRAGQYIPLSPTEFKLLTLLMENAGRVLSKSR 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + +I++ ++ LR+K+ I T G GY LR Sbjct: 192 ILDRVWGFDFSGDGRIVETYVRYLRRKI--DHLDPPLIHTERGVGYCLR 238 >gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185] Length = 221 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++++ V V G +G+ FD I+LD+ + ++ GFE Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + ED+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 65 VSKMIRSQSNV-PIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ ++ +++DA V V I LT KE+++++LL + LT+E + ++ Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IID I LRKKL+ YI+T+ G GY + E Sbjct: 184 YDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 221 >gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326] gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEALDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 266 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + L++ F V G ++ + + D I+LD L I G E Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ M S ++++ GL++GADDYISKPF+ ELV R+++I+RRS G Sbjct: 101 VCRRIRSR-GDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G+ +++ A ++ G + LT +E+ ++ L ++E L ++ Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + +LR+K+ + TVWG GY L Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583] gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G L + +D +I+D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R++ Sbjct: 61 SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + TV+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDIP-LLHTVRGAGYMLKAPDK 226 >gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 228 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+ + L L + + V + + I + + I+LD + G Sbjct: 4 KILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRSGIH 61 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ P+ +L+ SS ED + GL +GADDYI+KPF+ + L+ARI A+ RRS Sbjct: 62 LIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +LI L ++ A+ V V + L+G EY+++ L +E L+ ++ Sbjct: 122 YDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLITHPEKVYRREQLLDFIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +D +I +LRK L YI+TV G GY + +D Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEPYGFE-RYIQTVRGSGYRFSNHFQD 228 >gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra [Mycobacterium avium subsp. avium ATCC 25291] Length = 223 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++DD + S+E L+ F V G + + DAI+LD+ + + G V+ Sbjct: 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120 ALR PVC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR Sbjct: 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G L V++ + V G + LT +E+ ++ +L+ K L++ L ++ Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DVFI LR+KL GG + TV G G+VLR Sbjct: 181 YDFAADTNVVDVFIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 221 >gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] Length = 281 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 54 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 113 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 114 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 172 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 173 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 232 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 233 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 281 >gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] Length = 227 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED++ ++ L + V ++ G D + L ++D I+LD+ L + G+ Sbjct: 1 MKLLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIMLPKLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + I TPV ILS +ED+V+GL+ GA+DY+ KPF EL+AR++ +R Sbjct: 61 QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DLS++L + I LT KE+ ++E L ++ +T+ + + Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +D + + +ID + +LR K+ + I+TV G GY L ++A++ Sbjct: 181 WDMNFDSDTNVIDAAVKRLRSKI-DKPYQIKLIQTVRGMGYKL-DDAEE 227 >gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217] gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + ++N G++G+ L + +D I+LD L + G Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +L ALR + STPV ILS ++ ++++V+GL++G DDY++KPF EL+ R+ R Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + +V G L + L + V + H + L KE+Q+++ L N +++ + ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K IETV G GY L + Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGF-PEMIETVRGAGYRLSK 223 >gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816] gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes str. Scott A] Length = 225 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|331701207|ref|YP_004398166.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128550|gb|AEB73103.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 242 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 123/239 (51%), Gaps = 16/239 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+K+++ +++ + E ++V + G + ++ +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMQMFFQKEGWDVTIAYDGIEAMDKFNEDPDSWDMITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R + P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ RR Sbjct: 61 GMEVAKEIRAKSQTVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120 Query: 119 SRGHAQ-----------SLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166 + + + T +N + V + RI LT KE+++++ L+ + Sbjct: 121 AHTETEEESEDEKAKNVFDVQTDHFKLNSSTREVYLDDKRISDLTPKEFELLKTLAQKPR 180 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E L +++ + + +D + KLR+K+ I+TVWG GY ++ Sbjct: 181 QVFSREQLLETVWNYEYYGDERTVDAHVKKLRQKIEKVGT--QVIQTVWGVGYKFDDSE 237 >gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 236 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TP+ +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|297194827|ref|ZP_06912225.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720711|gb|EDY64619.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A +E L+S F V G+ ++ FD ++LD+GL GF Sbjct: 3 RILIAEDEERIASFVEKGLRSNGFTTTVAADGDTALDHALSGRFDLMLLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR ++++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R + Sbjct: 63 VLRELRESRVTLPVVVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +GDL ++L + V G + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLRSGDLGLDLRTRRARVSGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL +ETV G GY + Sbjct: 183 YDFDPGSNIVDVYVRALRKKLGA-----ERLETVRGMGYRM 218 >gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 236 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L ++ L+ + V E + ++LDL L G Sbjct: 7 KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A+ P+ +L+ +++ GL +GADDY+ KPFN +EL ARIRA++RR Sbjct: 67 ICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHVR 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G ++L +T+ G LT E+ +++ L LT++ Sbjct: 127 ELPGAPSKEEGSVTFGPWILDLANRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + IDV + +LR+ L + YI+TVWG GYV + Sbjct: 187 MSLARGREWSAMERSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVFVPD 236 >gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 123/238 (51%), Gaps = 11/238 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + +E+ + + I++D+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 AQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +N D+ V G I L+ EY+++ L + L+K LNH++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLRENAKDET 229 + I++ +I LRKK+ + +G IET G GY++RE + Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMIREPKAGQA 246 >gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED+K + ++L L+ E ++V GE+GIE K +D I+LDL + G Sbjct: 1 MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R + P+ +L+ +KV L GADDY++KPF EEL ARIR +R Sbjct: 61 EEVCKIIR-KTSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNK 119 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I L ++L ++ I LT EY + L L K +++E LN + Sbjct: 120 SNFTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E KI+DV+I LRKK+ +I TV G GYVL++ + Sbjct: 180 WGYDYMGEEKIVDVYINALRKKI--DYDENKFIHTVRGFGYVLKKEDE 225 >gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] Length = 231 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +E+ L ++ + V+ G D + + + +ILD+ + I G +V Sbjct: 4 VLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ++S DK++GL +GADDYI KPF+ EL+AR++A +RR Sbjct: 64 CMKIRKEYNI-PIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRRYVYL 122 Query: 123 AQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + +++N V + G + LT EY+++ LL+ + E Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNGGKVFSAEDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + I +LR+KL + +ETVWG GY + Sbjct: 183 YKEIWTEKYFEGNNTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230 >gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ ++ V + G++G++ ++D IILD+ L + GFE Sbjct: 3 KILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R A + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ L+++ A+ V V G + T KE+ ++ N L+KE Sbjct: 122 LASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V + V I KLR+K+ ++ETVWG GY L Sbjct: 182 RNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 226 >gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ + ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVLR +R A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+AQ+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ + I TV G GY++ Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFA-PKLIHTVRGMGYLM 221 >gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 237 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L+SE + V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ GDL ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 APERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNIGREQDPIRTVRGAGYALDD 227 >gi|183981321|ref|YP_001849612.1| two-component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium marinum M] gi|183174647|gb|ACC39757.1| two-component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium marinum M] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 222 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ ED+ +A IE LKS + + + + F+ +ILDLGL G E Sbjct: 3 HILIAEDEPRIASFIEKGLKSHGYATTTVENAHEALSFALSDGFELLILDLGLPGRDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR PV IL+ I+DK+ GL+ GADDY++KPF EEL+AR+R +R Sbjct: 63 VLADLRGQGSVLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVSI 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ ++L + +V I L +E+ + E L+++ L+ + Sbjct: 123 GTPPETMTMTAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LRKKL N+ IETV G GY L+ Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGNS-----LIETVRGVGYRLK 221 >gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family [Psychromonas ingrahamii 37] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +L +++ L + ++ V GE+G+ Y +DA I+DLGL I G Sbjct: 1 MRILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + P+ IL+ S +DKV GL +GADDY+ KPF EELVAR+ A++RRS Sbjct: 61 TVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V+ + I L+ EY++ E L +K + H+YD Sbjct: 121 GKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFMLHPGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+VFI +LRKKL IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NEYGLIETLRGQGYRLTP 222 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+EL +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEKDTYI-MMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + ++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + I L L S + V D D +EL K I DL L + G + Sbjct: 4 RIFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLPKMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ILS DKV GL SG+DDY++KPF EL AR+R+++RR Sbjct: 64 AIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHVT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L V+ + +++ G ++ LT KEYQ++ L K+ + +E LN ++ Sbjct: 124 SDVIKTKH--LVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +DV I LR KL++ G YI+T+ GY E D Sbjct: 182 DFIGESRALDVHIRALRSKLNDD--GHKYIKTIRSVGYRFYEEGDD 225 >gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 223 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241] gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W] gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293] gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241] gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W] gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293] gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + IE LK E ++V+ G++ + + D IILD+ + + G E Sbjct: 7 KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R +R +T + L+ S ++ G GADDYI+KP L++RI AI+RR+ Sbjct: 67 ACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRRN 126 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + DL ++ + V +I L KE++++ LL+ + T+E L Sbjct: 127 SKGEETLENKVEIADLVIDRETFLVYKNDEKIVLAKKEFELLYLLASKPGKVYTRETILK 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + IDV I KLR+K+ + Y+ TV G GY Sbjct: 187 SIWEDSVVVTNRTIDVHIRKLREKIGDD-----YVSTVKGVGYKF 226 >gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 + +R + +L+ D V+GL GADDYI+KPF+ EL ARI++++RR Sbjct: 67 CKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRRIEVH 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 KEKTNTITSGPFSLNIIEERLYRDGQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 222 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ L+ ++ +LK N+ V GE G + + +D IILD L G Sbjct: 1 MRLLLVEDEQRLSDALAYILKKNNYAVDTAYDGETGQAMAETGIYDIIILDRMLPCKEGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR I TPV +L+ ++E+++ GL +GADDY+ KPF+ EL+AR+RA+ RR Sbjct: 61 EILKELRNQGIGTPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRRRN 120 Query: 121 GHAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ V G I LT KE ++EL +T+E L+ ++ Sbjct: 121 VQLGGDKLEAWGLILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +++++ LRKKL+ IET+ G GY L+ Sbjct: 181 GLDSDVETGTVEIYVHYLRKKLN---FRDISIETIRGVGYCLK 220 >gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A +I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---RHIGTVIRVGYKFEE 225 >gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas arsenicoxydans] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A + L F V + G DG + ++D ++LD+ L D+ G+ Sbjct: 1 MKILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++++LR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++L + G +I LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV I +LR K+ + I TV G GY L Sbjct: 181 DMNFDSDSNAIDVAIRRLRAKI-DDPFEPKLIHTVRGMGYTL 221 >gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A + L+S F V + G DG+ FD +I+D L ++ G Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +LR ++STPV +LS +S+++D+V GL++G DDY++KPF EEL ARI A++RR Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ G LS++L +TV G I L +E++++E L R N LT+ M L +++ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 R P+ ++DV I KLR+K+ + G + I+++ G G++LR Sbjct: 216 RFIPQTNLVDVHIGKLRRKI-DDPGAQPLIQSIRGTGFMLRVPE 258 >gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 238 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 12/235 (5%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+K +A + ML++E F G D + + + D +ILDL L + Sbjct: 1 MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLMLPGLD 60 Query: 59 GFEVLRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G EV +R ++ +L+ + D++ GL +GADDY++KPF+ EL+AR+RA++ Sbjct: 61 GLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALL 120 Query: 117 RRS---RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTT 168 RRS L T +V+++ + + LT E+++++ Sbjct: 121 RRSLRGEQSDHLLYRTESFTVDVEHHIAQRHLSGQEAEMLDLTSLEFKLLQTFLSYPGRA 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +++L+ + +++D + +LRKK+ +I+T+ G GY + Sbjct: 181 WSRTQLIDNLWGNDFFGDDRVVDTQVARLRKKIEVNPTQPQFIKTIQGVGYKFED 235 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ LA +EL LK E F+V+V G +G+EL ++D I+LD+ L + G E Sbjct: 4 RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V R +R A STP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA R Sbjct: 64 VCRRIR-AAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ A+TV+ I LT +EY ++ N LT++ L+ ++ Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++DV++ LR+KL YI+TV G GYV+R Sbjct: 183 FDAEVETNVVDVYVRYLRQKLDEHDKE-RYIQTVRGTGYVMRP 224 >gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 224 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V G D ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 240 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++EDD+ LA L+S +V V GE+ I + + D ++LDL L G V Sbjct: 11 IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLMLPGADGLTV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A + P+ +L+ + D+V GL+ GADDY++KP L+ARIRA++RR Sbjct: 71 CREVRSAYKN-PILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVETD 129 Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L ++ A+ V + G + LT EY ++ LL+ T L++E Sbjct: 130 SERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGTVLSRETIFEK 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L + + + + IDV I ++R K+ + I+TV +GY+ + Sbjct: 190 LRGIQYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLFVKE 236 >gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + + D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEV 64 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I GD+ ++ A V+ G IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK+L N + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKEL-NGTTDADPIRTVRSAGYSLDMDA 229 >gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+A + L+ F V + D GE G++ +FD +ILDL L + GFE Sbjct: 3 RILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICRKVR-EAKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SRIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Cupriavidus taiwanensis LMG 19424] gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Cupriavidus taiwanensis LMG 19424] Length = 241 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG + +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ALR + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 AQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYLE 234 D + + +IDV I +LR K+ + I+TV G GYVL A DE L Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDGFDARLIQTVRGMGYVLEAPEAADEAGAPLA 235 >gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC BAA-613] gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC BAA-613] Length = 231 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E F V G + +E E D +I+D+ + + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFKVIKAYDGYEALEYLDKNEVDLLIVDVMMPGLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 64 TLKVR-ENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRRYTQL 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L +N D K V V G I LT EY ++ LL + + Sbjct: 123 GNLNQQADGQIYKCGGLQINDDNKEVTVDGDAIKLTPIEYNILLLLVKNAGKVFSIDEIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEKQ 231 >gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630] gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + + I ++ + D G + + + K D +ILD+ + + GF Sbjct: 3 KILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R R + P+ IL+ EDK++G + GADDYI+KPF+ + L+A++ A++RR Sbjct: 63 VCRVSR-EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + + + ++ V V+ I LT KE++++ L N ++E LN ++ Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LRKKL ++I T+ GY Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220 >gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 226 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + ++ L E ++V + G + L D IILD+ L I G Sbjct: 4 RILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALAANN-PDLIILDIMLPGIDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ D+V GL +GADDY+ KPF EEL+ARIRA++RR Sbjct: 63 VCRQIR-SNSDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEELLARIRALLRRRSR 121 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + DL++N + LT KEY+++ + LT++ + ++ Sbjct: 122 ETEAEVLQFSDLTLNTSTREGFRGQRSFSLTAKEYELLLYFLQNPHRVLTRDELMTRIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++V+I LR KL A G I+TV G GYVL+E Sbjct: 182 YDFSGESNVLEVYIGYLRAKLE-AGGEPRLIQTVRGVGYVLKEQ 224 >gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 6/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + I+ L+ E V+ G +E+ + D I+LDL L D+ G E Sbjct: 6 KVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ + + GL GADDYI+KPF+ EL+ARI AI RR Sbjct: 66 ICSIVRKRSRV-PIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNE 124 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL +++ K + G I LT ++Y+++ L N T T+E ++ Sbjct: 125 EVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIS 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + +D + +R+K+ YI TV G GY +E Sbjct: 185 TALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNEEKS 238 >gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDDK A + L+ GE+G+E ++D +I+D L G Sbjct: 1 MRILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ ALR A TPV ILS + ++D+V GL++G DDY+ KPF EL+ARI A+ RR + Sbjct: 61 SVIEALRKAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPK 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ DL ++ G I L +E++++E L +T+ M L ++ Sbjct: 121 ASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV I +LR K+ + T+ G GY +R+ A Sbjct: 181 WEYHFDPQTNVIDVHISRLRAKIDKDFDRP-LLHTIRGAGYSIRDAA 226 >gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory system with EnvZ [Serratia symbiotica str. Tucson] gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory system with EnvZ [Serratia symbiotica str. Tucson] Length = 239 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++IV G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIVFGRFKLNLGTREMFREDQPMSLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ L +E +V V G + + L FD ++LD+ L + G+ Sbjct: 4 RVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLSGYR 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR ++TPV +LS D+ GL GAD Y+ KPF+ LVA++RA++RR Sbjct: 64 VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G+L ++ ++ V G + L+ +EY ++ L+ R ++KE L ++ Sbjct: 124 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVWGE 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +++V++ LR+KL+ A G + ++TV G GY DE Sbjct: 184 DQFVTRNVVEVYVGYLRRKLAAAGAG-HLVQTVRGHGYR----VSDEPS 227 >gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 234 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++L + L++E F V V GE+ D ++LD + + G E Sbjct: 5 RILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVPGLSGIE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R PV +L+ D+VRGL +GADDY+ KPF+ EL+AR+RA+ R Sbjct: 65 LCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H L+V GD+ ++ + + QG IHL E++++E L ++E L+ + Sbjct: 125 KPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LRK ++ + I TV G GY E Sbjct: 185 WGHDVYIDERTVDVHVGRLRKAINR-PRQSDPIRTVRGSGYSFDE 228 >gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 219 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ LA I+ L + V GE + K +F +ILDLGL DI G Sbjct: 1 MRILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV ILS ++D+V+GL +GADDY+ KPF+ EL AR+RA+ RR Sbjct: 61 TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A I ++ + + V + L+ +EY ++ L+ + L+K+ +Y Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ ++V I LRKKL + I+TV G GY++ + Sbjct: 181 WSDDVSSNTMEVHIHNLRKKL-----NPDLIKTVRGMGYMIEKE 219 >gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541] gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541] Length = 235 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A L++ F V ++ G++G E+ I+LD+ L GF Sbjct: 3 KILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVMLPGADGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116 + RA+R P+ ++S DK+R L GADDYI KPF+ EL AR++A + Sbjct: 63 ICRAVRRELDI-PILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHITRYER 121 Query: 117 -RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + A S++ G L + V V GH + L +E++++ L+ +KE Sbjct: 122 LKGGEQTAPSVLRFGSLEIQPQTHRVFVNGHEVRLAVREFELLLFLAEHPQIVFSKETLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++D V + V + +LR+K+ +++TVWG GY A ++ Sbjct: 182 DRVWDLDAMGSVSTVSVHMNRLREKIEPDPSNPRWLQTVWGAGYRFNSEALEDA 235 >gi|254520763|ref|ZP_05132819.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226914512|gb|EEH99713.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 221 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 1 MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+I L++ED+K + + L ++V + G IEL K + D +ILD+ L Sbjct: 1 MKINILIVEDEKEIREGVSEYLAEVGYSVISAEDGMQAIELFKNNKIDLVILDIMLPKAN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 GF VL +R + PV +L+ MS ++ ADDYI+KPF+ L RI A + R Sbjct: 61 GFVVLNKIRQE-SNVPVIMLTAMSDDYTQIMSFDEEADDYITKPFSIIVLHKRIEALLRR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GD+ ++ + + G I L KE ++IELL + LT+ L++ Sbjct: 120 GVKVSENKKWCYGDIEIDFEGYSARKNGENIDLKPKEIKLIELLLKYEGKVLTRAQILDN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ + P ++IDV+I +RKKL I TV G GY E Sbjct: 180 LWRIEEAPNDRVIDVYIKNIRKKLLLD-----CIVTVKGIGYKFEEQ 221 >gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905] gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + IE+ML + + + G + ++ + D ++LD+ + GF V Sbjct: 4 VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R A + P+ L+ + +DKV+GL G DDYI KPF +ELVARI A++RRS + Sbjct: 64 CQSIR-AMSNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +V G + ++ A+ V V G I LT KE++++ L T+E L + Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + +D I LR KL A +I+TVWG GY Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGYRFDP 225 >gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 787 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ LA + L +++ V + + G+ G E + +D I+ D+ L + G Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR STP+ +++ D++RGL +GADDY+ KP N EL AR+RA++RR Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ V + LT KEY ++E+L ++ + HL+ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P+ + + I LR KL ++IE V+G GY L+ Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAV-DWIENVYGLGYRLK 221 Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + ++ ML+ + D E+ + D +ILD+ + I G E+ Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 +A+R P+ L+ +E + +G DDY+ KP EL+ARI Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITH 615 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I L E + V G + FD +LDLGL + G Sbjct: 1 MRLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + + PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+LI +S+N + V QG + LT KEYQ++ L +T++ + LY Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E ++V I LRKK S I T+ G GY++ E Sbjct: 181 WSEEAESNTLEVHIHHLRKKFSTD-----LIRTIRGVGYLVEE 218 >gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + + +ILDL + ++ G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS ++ DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIKQVRKDSDI-PILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227 >gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 220 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I+ L E + V G + FD ILD+GL + GF Sbjct: 1 MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI + ++ + V + LT KEYQ++ L +T+E + LY Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E ++V I LRKK I T+ G GY++ E + Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSTLIRTIRGVGYLVEERS 220 >gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +A ++ +L+ N++V + GEDG++ +DA+ILD+ L G Sbjct: 1 MKILIVEDEIMIAEAVAQVLRKNNYSVDIAADGEDGLDCALSGIYDAVILDIMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL+ LR +KI PV +L+ S EDKV+GL GADDY+ KPF EEL+AR+RA R+ Sbjct: 61 SVLKLLRESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALTRRKG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GD+S+N + + ++I+LT KE Q +ELL KNT ++KE + L+ Sbjct: 121 ELIFDGIMKFGDISLNPHLLLLSCRDNKINLTLKESQALELLITNKNTAVSKETIIEKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 E E ++ I LRKKL A I+ + G GY+++ ++ C Sbjct: 181 GYDSEAEDNHAEIHISLLRKKLKQAGSV-LLIKAIRGIGYIIKYPEEESAC 230 >gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + L + V GE+G L +DA++LDLGL G Sbjct: 1 MRILVVEDDKDLNRQLTAALSQAGYAVDHAFDGEEGWFLGDTEPYDAVVLDLGLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A+ S PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLKEWRKAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +V G + ++ + V V+ + LT EY+++ + L +++ + HLYD Sbjct: 121 GRASDELVCGPVKLDTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + I+VF+ +LRKKL + IET+ G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLG-----FDIIETLRGLGYR 215 >gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ LK+E V+ G D + L + ++ II+D+ + + G + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K + V G I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGTLILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 230 >gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016] gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + + ++ E F V G++ ++ + Y I+LD+ + G EV Sbjct: 5 ILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIMMPIFDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 + +R+ + P+ +++ S DK+ GL SGADDYI KPF+ E+VARI+A+ RR Sbjct: 65 CKLIRLKSNT-PIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRITAH 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + S+I L +++D +V++ G ++LT KE +++ +LS N ++++ L+ ++ Sbjct: 124 KNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDEIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I ++R KL + I+T+WG GY Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLQLSEQYNRDIKTIWGMGYKFE 226 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V G DG L FD I++D+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L +LR A +TPV L+ S+ D+V+GL+SGADDY+ KPF EL+AR+R I R Sbjct: 61 RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + GDL++++ ++ G I LT KE+ ++EL R+ L + + + ++ Sbjct: 121 VPLSGNQLSVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV + +LR K+ + I+TV G GY L + ++E Sbjct: 181 DMNFDSDTNVIDVAVRRLRMKV-DDGHDIKLIQTVRGMGYRL--DVRNE 226 >gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 5 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 65 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 124 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 125 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 185 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 230 >gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++ L ++V+ G + +E+ D I+LD+ + + G+ V Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R P+ +L+ +S + D+V GL+ GADDY+ KPF+ +EL +R+R I+RR Sbjct: 75 CRAIR-KTSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGSL 133 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ + + V RI LT E+ ++ELL+ ++++ L Sbjct: 134 KPFNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLE 193 Query: 177 HLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +++DV + +LR KL G I T+ G GY L+ Sbjct: 194 KVWGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLK 241 >gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 244 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD A+ + + L+ + F V G + L + D +LD L + G E+ Sbjct: 18 VLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLL--PQADVAVLDWMLPGMTGLEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R P+ +L+ EDK+ GL+ GADDY++KPF+ E+VAR++ ++RR Sbjct: 76 ARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMGVR 135 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 G+L +++ A+ ++G + L+ E+ ++ L+ T+E L ++ Sbjct: 136 EVIEH--GELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGVD 193 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++DV I LR+KL + A YIETV G GY REN + Sbjct: 194 YPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFRENGQ 237 >gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 248 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 78 VMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ D+ V I LT E++++ L L+K L+ + Sbjct: 138 SEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPVA 242 >gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 241 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD L + L+ E + V G G+ E +ILD+ L ++ GF Sbjct: 10 RILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMSGFA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR S PV +L+ S +DKV+GL++GADDY++KPF+ E +AR+ +++RR Sbjct: 70 VLSELR-KTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N ++V VQ I LT KE+ ++ L+ TK+ Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + +I KLR+K+ YI+T+WG GY + A Sbjct: 189 YTQIWQEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFNKGA 239 >gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] Length = 232 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 118/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ + + L+ ++ +D L + D I+LD + G E Sbjct: 5 KILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMPGTSGIE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R L+ ++ + P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A++RR+ Sbjct: 65 LARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124 Query: 120 RGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H S + + + V + + + EY+++E + T+ L+H+ Sbjct: 125 DPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQLLDHV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + +DV I +LRK L+ G ++ ++TV G GY Sbjct: 185 WGGNVYVEERTVDVHIRRLRKALAID-GHEDLVQTVRGTGYRF 226 >gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+ + ++L L+ +++ + + G ++ D +ILDL L DI G Sbjct: 3 KILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVKQ-PDLVILDLMLPDIDGLS 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R P+ +++ ++ +DK+ GL GADDYI+KPFN E+VAR++A +RR + Sbjct: 62 ICKSIRKKYYY-PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +++ I L++N +K V + I LT E++++E L RK L+ E N Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELFN 180 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I V + LR+K+ ++ YI+TVWG GY++ Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYIIE 227 >gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021] gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021] Length = 221 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++ELL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator [Shewanella loihica PV-4] gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 238 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ + ++ L+ + + + G DG FD IILD+ L D+ G+ Sbjct: 14 MRILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGW 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L +R+ PV L+ S+EDK+ GL+SGADDY+ KPF EL+AR++ + R + Sbjct: 74 QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L +++ + + ++HLT KE+ ++ELL + LT+ + ++ Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + I TV G GY L A Sbjct: 194 DMNFDSDTNVIDVAIRRLRAKV-DDPFSVKLIHTVRGMGYKLDTEA 238 >gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6] gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L + + V V G++ +E + + I+LDLGL + G E Sbjct: 4 RILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS DKV L GADDY+ KPF +EL+ARIR +R S Sbjct: 64 VCRRIRG-WSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRHSSH 122 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G+L ++ + V ++GH +HLT EY+++ L + LT M L + Sbjct: 123 IQANDEPVLHFGELQIDRSRRIVTLKGHEVHLTPTEYELLRLFTNHVGKVLTHRMILRTV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E E+ + VFI +LR+K+ YI T G GY Sbjct: 183 WGANYEQELPTLRVFITQLRRKIEPDPAQPMYILTEPGIGYRF 225 >gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ +K+E + + G++ + + IILD+ + ++ G Sbjct: 1 MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+RA++RR+ Sbjct: 61 TEVLKEVRKDNPV-PILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L++N D+ V G I+LT E+ ++ LL+ N + + Sbjct: 120 QNGLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR KL +A GG ++TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGYKIE 227 >gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++ + V V G +G++ FD I+LD+ + ++ GFE Sbjct: 12 HILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + +D+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 72 VAKMIRSQSNI-PIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + ++ V+ DA V V I LT KE+++++LL K +T+E + ++ Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ID I +RKKL + YI+TV G GY + E Sbjct: 191 YEYHGETRMIDTHIKNIRKKLDIS-----YIKTVKGIGYKIDE 228 >gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565] gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565] Length = 218 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K LA + L+ F + G + L + +DAIILDLGL G Sbjct: 1 MRILIVEDEKILAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R I TPV +L+ + +K+ GL +GADDY++KPF ELVAR+ A+VRR+ Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S++ G + +++ A V +G I LT E++++ L + +++ ++H+Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++VFI ++RKK + IETV G GY + E Sbjct: 181 QDFDRDSNTVEVFIGRIRKK-----TNPDLIETVRGLGYRINE 218 >gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD A+ + +++E + V G D I + ++ D +ILD+ + ++ G+ + Sbjct: 4 LLVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLETFKADLVILDVMMPNMDGYRL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ K++G G DDY+ KPF EELVAR++A+++R R Sbjct: 64 CQELRDYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYRIA 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 S + G +++N + + L KE++++ L+ TL +E + ++ Sbjct: 124 VSSSVQIGAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWGID 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LR++ A G I TV G GY + +A Sbjct: 184 FEGNERTLDVHINRLRERFPEAEAGFR-IATVRGLGYRMEPSA 225 >gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 248 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD A+ +E+ L + + + G + +++ + E+ +++D+ + I GF Sbjct: 20 KILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFT 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ I++ +D V G + GADDYI+KPF EL AR+ AI+RR G Sbjct: 80 VTERIRARSDV-PIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ GDL ++ V + G ++LT E++++ L+ +E+ Sbjct: 139 YQHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV + +LR+K+ I TV G GY L + Sbjct: 199 VWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLAD 244 >gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] Length = 224 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ E ++V + GE G+ Y D ++DLGL + G Sbjct: 1 MRILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLPKMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ R + P+ IL+ +DKV GL +GADDY++KPF+ EEL+AR A++RRS Sbjct: 61 EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + +N ++ V + + LTG EY+++E L + ++K H+YD Sbjct: 121 GQANPEMIAGPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VF+ +LRKK+ N IET+ GRGY LR Sbjct: 181 QDFDLDSNVIEVFVLRLRKKIDPDGTL-NPIETLRGRGYRLR 221 >gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121] gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121] Length = 226 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK +A I L+ + V + G+ G+ +DAIILD L + G Sbjct: 1 MKVLVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + P+ +LS M+ + +V GLQ+GADDY++KPF EL AR+ + RR+ Sbjct: 61 NLLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNT 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DLS+NL + + I L +EY+++E L ++ +T+ M L + Sbjct: 121 HESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I +LR K+ + + I T+ GRGYV++ Sbjct: 181 WDYHFDPQTNVIDVHISRLRNKI-DKPFSQVLIHTIRGRGYVIK 223 >gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 254 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54 RILL+ED++ + L+ + F V + G+ +E+ + D ++LDL L Sbjct: 20 RILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EV +R S PV +LS + DK+ GL+ GADDY++KP++ EL+AR++A Sbjct: 80 PRLDGTEVCTRIR-RSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 138 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RRSR G + ++++ V V G + + +E++++EL LT+ Sbjct: 139 VLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVLTR 198 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L+ E + K +DV + +LR ++ A I TV G GY L Sbjct: 199 GQIIERLWGPDYEGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRL 248 >gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] Length = 254 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254 >gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2] gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2] Length = 236 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L ++ L+ + V E + ++LDL L G Sbjct: 7 KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A+ P+ +L+ +++ GL +GADDY+ KPFN +EL ARIRA++RR Sbjct: 67 ICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHVR 126 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G ++L +T+ G LT E+ +++ L LT++ Sbjct: 127 ELPGAPSKEEGSVTFGPWLLDLGNRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + IDV + +LR+ L + YI+TVWG GYV + Sbjct: 187 MSLARGREWSAMERSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVFVPD 236 >gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +IE+ LK+E V G + +E+ + IILD+ + + G Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVMMPKLDGISA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K + P+ ILS + DK+ GLQ GADDY++KPFN ELVAR+++ +RR Sbjct: 66 TYKIR-EKKNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTF 124 Query: 123 AQSLIVTGDL-----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 V + ++ +AK V V G + +T EY+++ELL + Sbjct: 125 GTFEGVKKVIDLNGLMLDKEAKEVSVNGEPVKMTPIEYKIVELLMTNAGRVFSINEIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I K+R+K+ Y++ VWG GY + + Sbjct: 185 VWNEPYYNAENTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230 >gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium damselae subsp. damselae CIP 102761] Length = 239 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSIDSKVIEFGDFRLNLGTREMFRGDEPMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + ++ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGQE 238 >gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 254 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254 >gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL + D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A +I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---RHIGTVIRVGYKFEE 225 >gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E F V G + +E + ++ D +I+D+ + + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDADLLIIDVMMPGLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 64 TLKVR-ENSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L +N D K V V G I LT EY ++ LL + + Sbjct: 123 GNLNQQPDGQVYKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDEIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEKQ 231 >gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36] gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + L+ + F+V + ++ + I+LD L G + Sbjct: 4 RILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGSGIK 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ + PV +L+ EDKV+GL+ GADDYI+KPF+ +EL+AR+ A++RR Sbjct: 64 YIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMRRV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++I L ++ A V I + E++++ ++E L+++ Sbjct: 124 APMTQDTVIDIHGLQLDPVAHRVSANDTVIDIGPTEFKLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L+ + Y++TV G GY Sbjct: 184 WGMNVYVEDRTVDVHIRRLRKALTP-SEHDKYVQTVRGAGYRF 225 >gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 257 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +L +++ L+ E + + + G + + ++ DA++LD+ L D+ G Sbjct: 31 IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 90 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR PV L+ S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 91 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 150 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL+++ D+ V G I LT E++++ L L+K L+ Sbjct: 151 LVVSDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 210 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG I TV G GY+L+ Sbjct: 211 RVWSYDFGGKSSVVEIYISYLRRKI--DAGRNPMIHTVRGSGYMLK 254 >gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous] Length = 251 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED+ ALA+ I L+ + F +T G + I L + + D ++LDLGL + G EV Sbjct: 27 MVVEDEAALANLIGSYLERDGFEATITGDGAEAIALARRIDPDVLVLDLGLPSLDGVEVC 86 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ + D + GL GADDY++KPF EL+ARI+A++RR R Sbjct: 87 RQLRTFSDAY-VVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPRTTD 145 Query: 124 ----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDLS++++ + V V G + LT E+ ++ LS +T+ + ++ Sbjct: 146 TARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIGAVW 205 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV I LR+KL + A Y+ TV G GY + Sbjct: 206 GPNWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGYRM 247 >gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AAG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRF 225 >gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041] gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + + +ILDL + ++ G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS ++ DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIKQIRKDSDI-PILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G + G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227 >gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D++ + ++ E F + G + +++ Y ++LD+ + GFEV Sbjct: 5 ILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNKYSPLLLLLDVMMPKKDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ + D++ GL GADDYI KPF+ E++ARIRAI+RR Sbjct: 65 CREIR-QNSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDIS 123 Query: 123 AQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +N+ V+V G ++LT KE +++ LLS +++ L+ ++ Sbjct: 124 DEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I +LR K I+T+WG GY Sbjct: 184 GYEYFGDARTVDTHIKRLRAKTDITDTSAWDIKTIWGVGYKFE 226 >gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + L+ +TD G+DG+ L +FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R +TPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R DL ++L ++TV G +I L +E++++E L+ +T+ M L Sbjct: 121 RTEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P+ +IDV + +LR+K+ G I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFGMP-LIHTIRNAGYMLRAE 226 >gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 224 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V G D ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGEQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 224 >gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ L I L E + V G D + E+D I+ D+ L + GF Sbjct: 1 MRILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R I TPV +L+ IED+V+GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 61 EILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNP 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ +L+VN ++ V I L+ +E+ ++E + K L++E H Sbjct: 121 TSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ E +IDV+I LR+K+ + I T+ G GYVL+ Sbjct: 181 IWNYDYEGGTNVIDVYIRYLRRKI-DKGFEPKLIHTIRGIGYVLK 224 >gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + I L+ F+V + ++ + D ++LD L D G Sbjct: 5 RILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGVS 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR + P+ +L+ S DK G GADDY++KPF+ ELVARI A +RR+ Sbjct: 65 WIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L +N + + V G I + E++++ L ++ L+H++ Sbjct: 125 PSGNAWRSA-GRLQLNPETQRVTADGANIECSSSEFKLLHFLMTHPERVFSRRQLLDHVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D I +LR+ L +AG +YI+TV G GY A Sbjct: 184 GEDACVEERTVDTQIGRLRRLLE-SAGLSDYIQTVRGSGYRFSAPAP 229 >gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + + + G G + +D +I+D L + G Sbjct: 1 MRILIVEDDPEASQYMVKAFREAGHLADHAGDGLAGYQKACEENYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR KI TPV ILS + ++D+V+GL+SG DDY+ KP+ EL+AR+ A+ RR Sbjct: 61 SLIGGLRAQKIETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALARRKP 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ G L ++ A + G I L +E++++E L +T+ M L H+ Sbjct: 121 PGTAEETIYRIGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTMLLEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +P+ +IDV I +LR K+ + ++T+ G GY++R++ Sbjct: 181 WDYHFDPQTNVIDVHISRLRSKI-DKGFDPPLLQTIRGIGYMIRDS 225 >gi|299530817|ref|ZP_07044232.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298721333|gb|EFI62275.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 223 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ L + L V GE L + FDA +LDLGL G Sbjct: 1 MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R S PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRAWRTQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA +L G ++++ V V+G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKKL + IETV G GY L + E Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLAAPSNQE 223 >gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268] gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268] Length = 237 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 111/235 (47%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DDK + +I + L E + V G D +++ + D IILD+ + + G Sbjct: 3 KILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENVDLIILDVMMPGLDGIR 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K S P+ ILS DK+ GL GADDYI+KPFN E+VAR+++ +RR Sbjct: 63 TTLKIR-EKSSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYTQ 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G L +N D K V V G + LT EY ++ LL + + Sbjct: 122 LGNMNEQSKGEAIYSCGGLVINDDTKEVSVDGELVKLTPIEYNILLLLVRNAGKVFSIDE 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + V I +R+K+ + Y++ VWG GY + + K E Sbjct: 182 IYTSIWNEEAIGADNTVAVHIRHIREKIEINSRKPKYLKVVWGVGYKIEKQGKSE 236 >gi|15842835|ref|NP_337872.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis CDC1551] gi|13883164|gb|AAK47686.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis CDC1551] Length = 235 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 14 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 74 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 132 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 133 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 192 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 193 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 231 >gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] Length = 228 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRVR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G + ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 SSDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224 >gi|297156303|gb|ADI06015.1| putative two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + L+ E + V G + + + DA++LD L D G Sbjct: 19 RVLVVDDEPDLTEVLSGALRYEGWEVRTAADGASALATARAFGPDAVVLDWMLPDSDGLT 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF------NKEELVARIRAI 115 VLR LR V L+ ++ED++ G+ +G DDY++KPF + + R + Sbjct: 79 VLRGLRAELAGVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVLARLRGLLRRAGM 138 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R S H +V GDL ++ A+ V G I L+ E++++ L L+K L Sbjct: 139 ARGSDLHQADRLVVGDLVMDEQAREVTRGGVVIELSRTEFELLRFLMRNPRRVLSKAQIL 198 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ +++++I LRKK+ AG I TV G GYVL+ + Sbjct: 199 DRVWSYDFGGRAHVVELYISYLRKKI--DAGRTPLIHTVRGVGYVLKPDV 246 >gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC 35236] gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC 35236] Length = 239 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +N + IDV I +LR+ + YI+TVWG GYV + E Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKE 239 >gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] Length = 223 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++ H I LK+ F+V G E FD +I+D L +I G E Sbjct: 3 RILLIEDEDSIRHLISYDLKNAGFDVTGCPDGASAREKGLNESFDIMIIDWMLPEISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R R I + + +L+ ED + ++G DDYI+KPF+ EL+ARI+A V+R Sbjct: 63 LVRLFRGKGIDSVMMMLTAKDEEEDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIVK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ ++ G L+++L ++ V V G + LT KE++++E L L+++ LN ++D Sbjct: 123 TSRRVLEMGGLTMDLGSREVSVNGQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWDF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+DV I KLR KL G I ++ G GY L A Sbjct: 183 DYDGDTRIVDVHIFKLRNKLQ---GSGVKIASLRGIGYKLEVQA 223 >gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] Length = 239 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+++L + L++E F V V G++ D ++LD + + G E Sbjct: 10 HILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIE 69 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R PV +L+ D+VRGL +GADDY+ KPF+ EL+AR+RA+ R Sbjct: 70 LCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H ++V GD+ ++ + + QG IHL E++++E L ++E L+ + Sbjct: 130 KPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LRK ++ + I TV G GY E Sbjct: 190 WGHDVYIDERTVDVHVGRLRKAINR-PRQSDPIRTVRGSGYSFDE 233 >gi|301156196|emb|CBW15667.1| DNA-binding response regulator in two-component regulatory system with QseC [Haemophilus parainfluenzae T3T1] Length = 222 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R PV IL+ +++++++G+Q GADDY+ KPF E+V R++A++RR Sbjct: 61 DVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G++ ++ + + I LTG+EY+++EL L K L++ L + Sbjct: 121 GQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLSN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEELSSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 238 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD + + +L+ E + V G + + + + FD +LD+ + G++ Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + +L+ DKV GL+ GADDYI+KPF EL ARI A++RRSR Sbjct: 65 VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSRR 124 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A S + G +++ + LT +E +++E + L + Sbjct: 125 TAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRNTL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 LN + + + +D I +LRKK+ I TV G GY Sbjct: 185 LNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYR 230 >gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis 3_1_45B] gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis 3_1_45B] Length = 218 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + S+ L++E + G + + +ILDLGL G Sbjct: 1 MRILLVEDDDMIGESVMAGLETEGHAIDWVRDGNSALLALNTTPYSLVILDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R + TPV + + +++D+++GL SGADDY+ KP++ +EL ARIRA++RRS Sbjct: 61 QVLKEMRGRRDPTPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G+L ++ + V +G + L+ KEY ++ L+ RK ++ LY+ Sbjct: 121 GRADPVIERGELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+V I LRKKL+++A I+TV G GY+L Sbjct: 181 WDNTVGSNAIEVHIHHLRKKLADSA-----IKTVRGVGYMLE 217 >gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] Length = 227 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + +E L+ FNV G DG+ L K + ++LDL L + G EV Sbjct: 6 ILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLMLPGLEGQEV 65 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ PV +L+ ++S D++ G + GADDY++KPF+ ELV R+RAI+RR Sbjct: 66 CRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRRQT 125 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + L ++ D V + + LT E++++ L T++ L H+ Sbjct: 126 GPEEQSAPLRKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLEHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D + +LRKK+ + IET+ G GY +E Sbjct: 186 WGYEYDGYARTVDTHVRRLRKKIGPLSDD---IETIRGIGYRYKE 227 >gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 253 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D++ LA + L+ E+F V V G D + L + + D ++LDLGL + G EV Sbjct: 21 LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIEVC 80 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ S+ D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 81 RELRTFSDAY-VVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKAP 139 Query: 124 QSLIV------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 I G L +++ + V + + LT E+ ++ +LS R ++ Sbjct: 140 VYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++DV + LR+KL + Y+ TV G GY + Sbjct: 200 RQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 249 >gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL L+S+ ++V+ G++ ++ + D ILD+ L DI GF Sbjct: 1 MNILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 61 QILKQIRGK-YTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCT 119 Query: 121 GHAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + GD+ N + + LT E+ ++ LL + ++ E Sbjct: 120 QYNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I LR+K+S G ++I+TVWG GY + E Sbjct: 180 FEKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 229 >gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] Length = 233 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS + DKV GL+ GADDYI KPF+ +EL+AR++A++RR + Sbjct: 66 VCRDIRSRSNT-PIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +++NL +V V ++ + KE +++ L+ N T+E Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I ++R+K+ N + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRIREKIKNHDTWG--LATVWGIGYKFE 231 >gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905] gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905] Length = 247 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A +EL L+ E ++V V G +G+ L FD ++LD+ L I G E Sbjct: 26 KILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGIE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ ++ D+V GL +GADDYI KPF EEL+ARIR I+RR+ Sbjct: 86 ICRRVRTQSQV-PIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + D+ +++ A V VQG+++ LT EY +++LL KN T+E L + Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++DV+I LR KL YIETV G GYV+RE Sbjct: 205 WGYDTDIETNVVDVYIRHLRTKLPGDTNA--YIETVRGVGYVMRE 247 >gi|148654299|ref|YP_001274504.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566409|gb|ABQ88554.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + + LK++ F V+ GE ++ + D ++LDL L I G E+ Sbjct: 5 ILVVEDEEPILNLVVAYLKADGFVVHTARDGESALQQAQIVRPDLVVLDLLLPGIDGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R L+ V +L+ + DKV GL GADDY++KPF+ ELVAR++AI+RR R Sbjct: 65 CRRLQHDGGPY-VLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRHT 123 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L+ DL +++ + V+ +G + LT +E+ ++ L+ T+E L Sbjct: 124 GAAPAENTLLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLER 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +++DV I LR+KL + I+TV G GY Sbjct: 184 VWGHDFDGVDRVVDVHISLLRRKLEDDPAEPTLIQTVRGVGYKF 227 >gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601] Length = 233 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 ++D+ ++ +E L ++V GE+ +E + + D ++LD+ + + G+ V + Sbjct: 2 VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVCQE 61 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR----- 120 LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 62 LRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTSAS 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +I ++ ++ + + V RI LTG E+ ++ELL R ++ L ++ Sbjct: 121 GIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVW 180 Query: 180 DG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 + +++DV I +LR KL + I T G GY+ + E ++ Sbjct: 181 GYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIIEPGEE 233 >gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L+ + + L+ E ++V G + + + DA++LD+ L D+ G E Sbjct: 21 RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLE 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RRS Sbjct: 81 VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSGM 140 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A GDL+++ D+ V + LT E++++ L L+K L+ + Sbjct: 141 TAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDRV 200 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++++I LRKK+ G I TV G GYVL+ + + Sbjct: 201 WHYDFGGQSNVVELYISYLRKKI--DNGRAPMIHTVRGAGYVLKPASGE 247 >gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146] gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202] gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC 23685] gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202] gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC 23685] gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda FL6-60] Length = 239 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEDAVINFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 219 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ L +EL L EN+NV G+DG++ + +D IILDL L I G E+ Sbjct: 4 ILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRKIRQQQST-PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++++ +A V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 123 DIIDVNG--ITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPYDRD-KMIETVRGVGYVIR 219 >gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL J1-175] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V + G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 235 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L E + + GE+ EL + EFD ++LDL L I G Sbjct: 3 RILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISGTT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R + P+ +++ S+ D + GL+ GADDY++KP++ EL+ARI A++RR Sbjct: 63 LCRRM-HELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + G + +++ + V + G KE++++E L K LT++ Sbjct: 122 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + K +DV + ++R K+ + TV G GY + + Sbjct: 182 LIGRVWGSDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRICDE 232 >gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 236 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G D + + D +LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 69 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I GDL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 129 LLDDDAVIRVGDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ I+T G GYVLR Sbjct: 189 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLR 231 >gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067] gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171] Length = 225 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DDK + + L+ E F V GE ++ + ++DL + + G Sbjct: 1 MKQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMPKMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 61 FELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G L+++ + +++ + + KE++++ L+ T+E + ++ Sbjct: 121 TQASEVKIKIGQLTIDQKSYGIKIGNRELMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDV I +LR G I TV G GY L E Sbjct: 181 KRDYDGSDRTIDVHIKRLRDHFDEEKAGIR-ITTVRGVGYKLEE 223 >gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ E+D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 274 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD+ + + L+S+ F GE ++ + D ++LD+ L G E+ Sbjct: 50 IYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGESGIEI 109 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R + + PV +L+ +S D V+GL GADDY++KPF EL++RIRA++RRS Sbjct: 110 LKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVLRRSH 169 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G ++++ V G + LT KE++++ L + L +E + + Sbjct: 170 RVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQREQIMESV 229 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + ID+ I LR+KL G I+T+ G GY L E Sbjct: 230 WGFTYAGESRTIDMHIKSLRQKLGE---GGQIIKTIRGVGYRLDEPE 273 >gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + I ++ + D G + + + K D +ILD+ + + GF Sbjct: 3 KILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R R + P+ IL+ EDK++G + GADDYI+KPF+ + L+A++ A++RR Sbjct: 63 VCRVSR-EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + + + ++ V V+ I LT KE++++ L N ++E LN ++ Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LRKKL ++I T+ GY Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220 >gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 243 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ L+ + L E F V V + G G E +E+D I+LD+ L + GF+ Sbjct: 4 RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR I+TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR G Sbjct: 64 ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 H ++I G L + + V + G I+L KE++++ L+ + LT++ Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +N ++ + +DV + LRKKL +I+++ G GY L N Sbjct: 184 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLELDP-ESVHIDSIRGVGYKLVVN 234 >gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 221 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + I +LK + V V G +E+ + FD I+LD+ L I GF Sbjct: 4 RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKIDGFV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R P+ +L+ + ED+++G + DDYI+KPF+ L+ R+ A++RR+ Sbjct: 64 VCEIIRKESSV-PIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + ++ + V I LT KE+Q++E+L ++E LN ++ Sbjct: 123 LEENNSTLTFEEIIIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID I LR+KL+ YI T+ G GY + + Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLNID-----YIRTIRGVGYKIEK 221 >gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20] Length = 248 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G E Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R + + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 78 VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ D+ V I LT E++++ L L+K L+ + Sbjct: 138 SEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPAA 242 >gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ +L+IEDD +A L+ + V + G G++ +D +++DL L G Sbjct: 1 MKQVLIIEDDNNIAALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLMLPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+++A+R K P+ I+S + DK+RGL GADDY++KPF+ ELVARIR+ + R Sbjct: 61 YEIVKAIR-DKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMRY 119 Query: 120 RG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I + + D+ V V G I LT KEY+++ L+ N TK+ Sbjct: 120 ERLSGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + + V I KLRKK+ +G YIET+WG GY Sbjct: 180 FSSIWGEDYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGYRF 226 >gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 225 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 MHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] Length = 229 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 685 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ L ++ L+ + + V D G G+E + +D +++D+GL + G Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR +TP+ +++ + ++K+RGL +GADDY++KP + EL AR+RA++RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++ + V + LT KEY ++EL + ++ + HL+ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D P + + LR++L A +IE V+G GY L E Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGAD-GWIENVYGMGYKLSPKIDYEA 228 Score = 56.5 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L ++DD L ++ +L+ F++ + + D +ILD+ + G E+ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LRALRVAK 70 A+R Sbjct: 463 CHAVRNDP 470 >gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola F0402] Length = 228 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD+ +A + L+ E + V G +EL + D ++LD+ L + G E Sbjct: 3 KVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R S PV +L+ DKV GL SGADDY++KPF EEL+AR+RA++RR+ Sbjct: 63 VLRRIR-KTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEV 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S++ + ++ A V V L+ EY +++ KNT L+++ + ++ Sbjct: 122 RGTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + +DV++ LR K+ G YI TV G GYV+R + DE+ Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKTGE-EYISTVRGVGYVMR-DGNDES 227 >gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 229 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ + + ++V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++L+++ V + I LT KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + + I K+R K N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 225 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDDK +A +E L E + V + G E + + D + DL L D G+ Sbjct: 1 MNILLVEDDKTIAAGLEYSLGQEGYTVIMCHSVAAGKEAIEEIQLDLCLFDLSLPDGSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + R P+ L+ + V GL GADDYI+KPF +EL++RI++++RR Sbjct: 61 ELCKMARAKSDM-PIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCN 119 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GD+ +N V + I LT EY+++ + + L++ L + Sbjct: 120 KENNLKNIFEIGDICINTLDAKVYKKNIEISLTALEYRLLLVFANNIGQVLSRSQLLEGI 179 Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D D + V+I ++R+KL + I+TV G GY + + Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLEDDPQNPRIIKTVRGMGYRIGD 225 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 12/236 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ ++ I L ++V V G+ G+++ F IILD+ L + G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +ALR +++TP+ +L+ + S E+ V GL SGADDY+ KPF + EL+ARIR+++RR+ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 GHAQSLIVTGDLSV-----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A + S +L+ K+ G I LT EY+++E + L Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L +++ K++DV++ LRKK++ I+TV G GY+L+E Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRK-DQPALIQTVVGMGYMLKEEE 235 >gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 231 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q +V G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSRDKVVIGPIVVDRGLHVVTVSEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL +A GG++ I+T+WG GY + Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGESVIKTIWGVGYKIE 230 >gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] Length = 247 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +LA + L++E + V D G++ D +ILD L + G E Sbjct: 19 RILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLPGVSGLE 78 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R LR P+ +L+ ++VRGL GADDY+ KPF+ EL+AR+RA++RR+ Sbjct: 79 ICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELMARVRALLRRA 138 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + GD+ ++ D V G IHL EY+++E + T+ L+ + Sbjct: 139 RPERVASKLRLGDIDLDRDTHRVRRSGREIHLGPTEYRLLEYFMEKPGRVFTRAQLLDSV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + + +DV + +LRK L K+ I TV G GY E Sbjct: 199 WGMSAEIDERTVDVHVGRLRKAL-IRGREKDPIRTVRGAGYSFDE 242 >gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|221068535|ref|ZP_03544640.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713558|gb|EED68926.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 223 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ L + L V GE L + FDA +LDLGL G Sbjct: 1 MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R S PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA +L G ++++ V V+G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASALWQCGAITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKKL + IETV G GY L + E Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVAPSNQE 223 >gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 228 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++++ V V G +G+ FD I+LD+ + ++ GFE Sbjct: 12 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + ED+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 72 VSKMIRSQSNV-PIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ ++ +++DA V V I LT KE+++++LL + LT+E + ++ Sbjct: 131 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IID I LRKKL+ YI+T+ G GY + E Sbjct: 191 YDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 228 >gi|119718738|ref|YP_925703.1| response regulator receiver [Nocardioides sp. JS614] gi|119539399|gb|ABL84016.1| response regulator receiver [Nocardioides sp. JS614] Length = 234 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DDKA+ S+ L+ + V + G + + D +++D+ + + G E Sbjct: 10 RVLVVDDDKAVRESLRRSLEFNGYEVVLAADGAEALAGISAAAPDVVVMDVMMPRLDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 RALR A P+ +L+ ++ D+V GL +GADDY++KPF +EL+AR+RA++R Sbjct: 70 TTRALRTAGNDLPILVLTARDAVGDRVEGLDAGADDYLTKPFALQELLARLRALLRRVVP 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DLS+++ + V I LT E+ ++E+ R L + L + Sbjct: 130 HEDATDEMLSFSDLSMDVGTREVRRGERVIELTRTEFALLEMFLRRPRRVLERSFILEEV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V++ LR+K + A G I TV G GYVL+E+ Sbjct: 190 WGYDFPTTANSLEVYVGYLRRK-TEAEGEARLIHTVRGVGYVLKES 234 >gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL J2-003] Length = 225 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 239 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V+ G + I + D ++LD+ L D+ GF Sbjct: 12 RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ L+ +DKV GL G DDY++KPF+ EE+VARIRA++RR+ G Sbjct: 72 VTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHG 131 Query: 122 HAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A++ + + + +L + V I L+ E++++ L L ++K L+H Sbjct: 132 GAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILDH 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D EV I++ +I LR+K+ G+ I T G GYVLR Sbjct: 192 VWDYDWSGEVGIVESYISYLRRKI--DVIGEPMIHTKRGIGYVLRTPE 237 >gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] Length = 236 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+ I L +V + E + + D ++LD L G E Sbjct: 5 ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGASGVEF 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR P+ +L+ +DKV L+ GADDY++KPF+ ELVARI+A++RR Sbjct: 65 ARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRRRA 124 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V G L ++ V + L E++++ L ++ L+ ++ Sbjct: 125 PQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LR L + I+TV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRCALEP-SAHDALIQTVRGSGYRF 225 >gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 34/251 (13%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I ++L E F V + G + L + +FD IILD+ + G++ Sbjct: 6 ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGPNGYQT 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ LS + DK G SG DDY++KPF+ EL++R +A++RR + + Sbjct: 66 CRKIR-ELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRYQVY 124 Query: 123 --------------------------------AQSLIVTGDLSVNLDAKTVEVQGHRIHL 150 +++ DL +N + V G + L Sbjct: 125 KGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQLLDL 184 Query: 151 TGKEYQMIELLSLRKNTTLTKEMFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKN 209 T EY M+ELL ++ T + + ++ + V I LR K+ + G Sbjct: 185 TETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHPGNPE 244 Query: 210 YIETVWGRGYV 220 I+TVWG+GY Sbjct: 245 LIKTVWGKGYR 255 >gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] Length = 223 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ +A + L +E ++V GEDG+EL +D ++LDL L I G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR K TP+ +L+ + E+KV GL+ GADDY+ KPF+ +ELVARI A+ RR+ Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G+ ++I G ++ + + V V+ I LT KE +++LL L++E LN Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P ++DV++ +LR+KL I T+ GY + Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEG---QRIVTLRNVGYRM 222 >gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 261 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 10/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED+ + +E+ L+ E F+V + ++L + + IILD+ L D G ++ Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 63 LRALRV--------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 R +R P+ ILS + ED++ G ++GADDY++KPF+ EL RI++ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I+RRS G + + I G L ++ + V V H + LT KE++++ LL+ ++E Sbjct: 131 ILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREEL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK--NYIETVWGRGYVLRENA 225 L ++ + +DV + +LR KL A G N I T WG GY L A Sbjct: 191 LERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPA 243 >gi|18311314|ref|NP_563248.1| two-component response regulator [Clostridium perfringens str. 13] gi|168205161|ref|ZP_02631166.1| response regulator [Clostridium perfringens E str. JGS1987] gi|168210364|ref|ZP_02635989.1| response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213243|ref|ZP_02638868.1| response regulator [Clostridium perfringens CPE str. F4969] gi|168216703|ref|ZP_02642328.1| response regulator [Clostridium perfringens NCTC 8239] gi|182625784|ref|ZP_02953551.1| response regulator [Clostridium perfringens D str. JGS1721] gi|18145997|dbj|BAB82038.1| two-component response regulator [Clostridium perfringens str. 13] gi|170663254|gb|EDT15937.1| response regulator [Clostridium perfringens E str. JGS1987] gi|170711562|gb|EDT23744.1| response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715305|gb|EDT27487.1| response regulator [Clostridium perfringens CPE str. F4969] gi|177908940|gb|EDT71427.1| response regulator [Clostridium perfringens D str. JGS1721] gi|182381236|gb|EDT78715.1| response regulator [Clostridium perfringens NCTC 8239] Length = 230 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++D++ + +E LK E F+V+ GE+ +++ + D I+LDL L D+ G Sbjct: 1 MNILLVDDEEKIIEVLEAYLKKEGFSVFSCSNGEEALKIFDNNKIDLILLDLMLPDLSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ +++ + ED + G GADDY++KPF+ ++L+ARI+AI+RRS Sbjct: 61 EVCKVIRAKSCV-PIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRST 119 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G+L +N+D + V V+ I LT E+ ++ LS T++ + Sbjct: 120 PCPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEII 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ++ID I LR K+ +I TV+G GY Sbjct: 180 ELVLGDKSDSFDRVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFE 226 >gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ + + D I+LD+ + + G+ Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMPKLDGYG 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + ++ D++ GL+ GADDY++KPF+ +EL ARI I+RR Sbjct: 67 VCQELRKE-SDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFH 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G+L ++ + + V RI LTG E+ ++ELL ++ Sbjct: 126 KTSVNTTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEM 185 Query: 175 LNHLYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + +++DV I +LR K+ + I T G GY Sbjct: 186 LQLLWGCVPGLHLDTRVVDVHISRLRTKVEDDPNLPELIITARGSGYFF 234 >gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952] gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952] Length = 229 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + LK+E + G + + + + + +ILD+ + ++ G Sbjct: 1 MKILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTINDIELLILDIMMPEVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVVKILRKESQL-PIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 TMQVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWKQESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKI 226 >gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +IEDD + I++ L+ + V ++ ED + + + + DL L + G Sbjct: 4 IYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLPGMDGLTA 63 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R +R + P+ IL+ DKV GL GADDY++KPF EL ARIR+++RRS Sbjct: 64 IRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLRRST 123 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +NL+ + V G ++ LT KE+++++ L N +T++ LNH+ Sbjct: 124 RDQAESNELNQYCLNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELLNHI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + E + +D+ I LR+KL G I+TV G GY + + Sbjct: 184 WGYDYDGETRTLDMHIRTLRQKLGENGGS--CIKTVRGVGYRFIKTEE 229 >gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL F2-515] Length = 220 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 117/217 (53%), Gaps = 9/217 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVRKKYDM-PIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY 210 L ++ +V+ +DV + +LR+K+ + + Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAW 220 >gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator [Ralstonia eutropha JMP134] gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 224 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L +F V V G DG+ +E+D IILD+ L + G+ Sbjct: 1 MKILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + TPV L+ +ED+VRGL+ G DDY++KPF EL+AR+R ++RR Sbjct: 61 DVLRQLR-ERKDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ V G RI LT +E+ ++ L+ R L++ + ++D Sbjct: 120 VREADRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV I +LR K+ + I +V G GYVL Sbjct: 180 MNFDSDTNVVDVAIRRLRAKM-DDHFAPKLIHSVRGIGYVLE 220 >gi|46203088|ref|ZP_00052097.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 232 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 SVPGVTEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRGKIDRGFENP-MIHTVRGAGYVIRAD 227 >gi|313899606|ref|ZP_07833114.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] gi|312955591|gb|EFR37251.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L +EDD+A+A + LK E + V D ++ FD ++LD+GL D G+ Sbjct: 3 MKLLFVEDDQAIAMGLVYTLKKEGYEVVWCDHKRSALQQLDQQTFDLLLLDVGLPDGSGY 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + PV L+ + + V GL G DDYI+KPF EL++R+R++ RR Sbjct: 63 DICTYAKSR-QDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRMRSVQRRYH 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ LS+ V + + LT EY+++ + L++ L ++D Sbjct: 122 RQEEDIVQIQYLSIYPKQGKVYREQEEVLLTALEYRLLMVFINHPQQVLSRSQLLEGIWD 181 Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + V+I +LR+KL + I TV G GY L Sbjct: 182 AAGDFVNDNTLTVYIKRLREKLERDPQNPSIIVTVRGLGYRLE 224 >gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 233 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A +E+ L+ E + V G DG+E +D ++LD+ + I G E+ Sbjct: 5 ILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGINGIEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + PV +L+ SSI DKV GL GA+DY++KPF EEL+AR+RA +R Sbjct: 65 LRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGATK 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ + V H I LT +E+ ++ L + L++E L Sbjct: 125 DMALQVADQWLSAGDLRLHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQLLE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + ++DV+I +R K+ I TV G GYVL+E+ Sbjct: 185 NVWGIDYIGDTNVVDVYIRYVRNKIDPTRQLPELIHTVRGIGYVLKES 232 >gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 219 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + + L F + GE+G +DA+ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LRA R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G +++N D+ T G + L KE+ ++ELL L +++ LY Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 235 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE F V V GE ++ D +LD+ + + G E+ Sbjct: 5 IALVDDDRNILTSVSIALQSEGFTVRVYSDGESALKALLDNPPDLAVLDIKMPRMDGMEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K S P L+ D+ GL GADDYI+KPF++ L+ARIRAI+RR+ Sbjct: 65 LRRLR-EKSSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRRTEVR 123 Query: 123 AQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A G L ++ V+ G + LT E+ ++E L+ R +++ Sbjct: 124 ATPEDEADATPVEKIVRGRLEMDPARHRVQWDGKDVTLTVTEFLILEALAQRPGFVKSRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ Y + + ID I +LR+K IET++G GY E Sbjct: 184 QLMDTAYQDDVYVDDRTIDSHIKRLRRKFRQVDPEFKAIETLYGVGYRFGEE 235 >gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 233 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE I +E + ++LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRTKSQV-PIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124 Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + + D +N+ +V+ G R+ + KE +++ L+ N T+E Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+KLS+ K + T+WG GY Sbjct: 185 LDQIWGYEYIGDTRTVDVHIKRLREKLSDH--EKWRLATIWGIGYKFE 230 >gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD+ + +IE+ L E + + G + +E+ + E + +I+D+ + + G Sbjct: 3 KILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILEKEEVNLLIIDVMMPRLDGIR 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +R K S P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 63 ATLKIR-EKNSLPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARVKSQLRRFNE 121 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +++ G L +N D K V V G + LT EY ++ LL + + Sbjct: 122 LGGTAQEPKETIYKVGGLQINDDLKQVTVDGEFVKLTPIEYNILLLLMKNQGKVFSINQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 182 YESIWNEEAIGADNTVAVHIRHIREKIEINPKDPRYLKVVWGVGYKIEK 230 >gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] Length = 240 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DDK + S+ +L+ E + V G + +++ + IILD+ + ++ G Sbjct: 12 VLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILDVMMPELNGLSA 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 L +R K + PV +LS + DKV GL GADDY++KP+N EL+AR+++ +RR Sbjct: 72 LMKIR-EKNNIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRRYFAL 130 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ TG L ++ + K V V G LT EY+++ELL E Sbjct: 131 GAAAWADSNAVLRTGGLVLDKNTKQVTVDGEPAQLTATEYKILELLMEHPGYVFPAEQIY 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ K + V I ++R+K+ Y++ VWG GY + + Sbjct: 191 SRVWQEDVYAGEKTVMVHIRRIREKIEITPKNPKYLKVVWGIGYKIEK 238 >gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 227 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G+ + ++D ++LD+ L G+ Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDYDLLVLDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ M + D+V+GL+ GADDY++KPF+ EL ARI++++RR + Sbjct: 61 TLLQNLR-RSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 PRESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220 >gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 236 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 62/233 (26%), Positives = 113/233 (48%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDD+ + I + L+++ + V+ + G+ G+E+ + I+D+ + + G Sbjct: 5 HVLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNETIHLAIVDIMMPVMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR PV +LS S DKV GL GADDY++KPF EL+AR+ + +RR Sbjct: 65 MTMKLR-ENFDFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRRYSR 123 Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + ++ V G L +N D V V G + LT E++++ LL + Sbjct: 124 YLKAVDSKEEKEPENYYVVGGLELNEDTVEVSVDGRAVKLTPIEFKILLLLIKNPGRVFS 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ I V + ++R+K+ Y++ VWG GY + + Sbjct: 184 PDEIYERVWN-EKPITTDTIMVHVRRIREKIEINPKEPKYLKVVWGVGYKIEK 235 >gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15] Length = 226 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD+ +A+ + LK +F V G++G+ + ++D +I+D L + G Sbjct: 1 MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R PV ILS + ++D+V GL+ G DDY++KPF+ EL+ARI ++VRR+R Sbjct: 61 SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ DL ++L A+TV+ G I + +E++++E L +T+ M L + Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ ++T+ G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFDTP-LLQTIRGAGYMLRETA 226 >gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 7/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IEDD+ + I+ L ++ + V V G +G++ + FD I+LD+ + ++ GFE Sbjct: 4 HILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V +R P+ +L+ + +D+++G G DDYI+KPF+ + R+ A+ R Sbjct: 64 VANIIRNQSNI-PIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYG 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ V+ D V V I LT KE+++++LL K +T+E + ++ Sbjct: 123 ERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +IID I +RKKL YI+TV G GY + Sbjct: 183 YEPYGETRIIDTHIKNIRKKL-----NTPYIKTVKGIGYKI 218 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ ++ + L + V + G DG L +++D I+LD+ L + GF Sbjct: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR TPV +L+ S+ED+++GL GADDY+ KPF+ EL+AR++A+ RR R Sbjct: 61 SVLRALR-KVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++L ++ G RI LT KE+ ++ +++ R+ L+K ++D Sbjct: 120 AQEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + +++V I +LR K+ +A + + TV G GYVL A ++ + Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFEQKLLHTVRGMGYVLEPRATADSSD 229 >gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161] gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 225 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 61 FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + I L + V G G+ + DA++LDL L + G + Sbjct: 6 RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + ED+VRGLQ GADDY+ KPF+ ELV RI +++RRS Sbjct: 66 VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V G L V+ + + G + LTG+E+ ++ L T+ L ++ Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + V + +LR+KL I T+WG GY Sbjct: 186 GWEY-GDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGYR 225 >gi|290769859|gb|ADD61631.1| putative protein [uncultured organism] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++EN + G++G++ K E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++L+ ++V + L KE+ ++ + + LTK+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 226 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L +NF V GE+ +++ K + +ILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV R +R P+ +L+ D++ G + G D+YISKPF+ + LVAR+ AI R Sbjct: 65 EVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++ G + ++ A V + L+ KE++++ + L++E LN ++ Sbjct: 124 QSNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR K+ + YI+TVWG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGYKFE 223 >gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 6/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ ++ + L+ + F+ ++T+ DG++ + + D IILDL L D G EV Sbjct: 7 VLIIEDERDISRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTLPDADGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S P+ ILS SS DKV L GADDY++KPF+ ELVAR++A +RR Sbjct: 67 CRELRT-LTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDP 125 Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G LS++ A+ V I L+ KE+ ++ L+ N TK L+ Sbjct: 126 KLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E I V++ +LR+KL + YI TVWG GY + + Sbjct: 186 VWGYSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGYKFDPDETE 235 >gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 245 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++IED+ +A S+ + L E V V G +++ + D +ILDL L DI G Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ IL+ ++++V+GLQ GADDYI KPF+ +EL+AR+ AI RR+ Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LS+NL+ + V + G I LT E+ ++E T++ L+ ++ Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I++V I LR+K+ + + I TV+G GY LR + + Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPDDE 241 >gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 239 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ LA + L E ++ V D G G++ FD IILD+ L + GFE Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR++ Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I T GDLS+ + V + G + L KE++++ L R +T++ Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +N ++ + +DV + LRKKL G IE++ G GY L Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ++S +S DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSDI-PIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A GG++ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291] gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291] Length = 247 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK L I+ +++EN + G++G++ + E+ ++LD+ + + GFE Sbjct: 20 KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 80 TLEEIRKEYSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++ L KE+ ++ + + LTK+ Sbjct: 139 FNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 199 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803] gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803] Length = 226 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 226 >gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 245 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A +EL LK+ENF VY D + + + D ILD+ L + GF++ Sbjct: 19 ILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVMLPETDGFQI 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + + Sbjct: 79 CRKIR-EKYNYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKRY 137 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L +N+ + + LT E+ ++ +L + ++ E Sbjct: 138 NVGAQPQADVFEYGGLVLNVTTHECTLNEKPLVLTPTEFSILRILCQNRGRVVSSEELFR 197 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I V I LR+K+ ++ YI+TVWG GY + Sbjct: 198 QIWKEEYFTKNNNTITVHIRHLREKMGDSFENPKYIKTVWGCGYKIE 244 >gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 234 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D+ + + LK+ +NV + G +E + I+LDL L ++ G E Sbjct: 9 RILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLE 68 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + L+ PV +L+ + D++ GL+ GADDY++KPF+ ELV R+++++RR+ Sbjct: 69 VCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRRA 128 Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ GD+ ++ V + G + T E++++ LL R+ +E LN Sbjct: 129 SNGAEVSDRLVLGDIQIDRTRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLND 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +D I +LR+KL + YIET+ G GY + E Sbjct: 189 VWGYETVIDTRTVDTHIRRLREKLGKSGS---YIETIRGFGYRVVE 231 >gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 111/228 (48%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +E+ L ++ + V+ G D + + + +ILD+ + I G +V Sbjct: 4 VLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIMMPGIDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ++S DK++GL +GADDYI KPF+ EL+AR++A +RR Sbjct: 64 CMKIRKEYNI-PIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122 Query: 123 AQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + +++N V + G + LT EY+++ LL+ + E Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGAELKLTPTEYKILLLLASNSGKVFSAEDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + I +LR+KL + +ETVWG GY + Sbjct: 183 YKEIWAEKYFEGNNTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230 >gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus] gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus] gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A + L++E F V G + + D +LD+ L DI GF+ Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV +L+ DK+ GL GADDY++KPFN E+VAR++ +RR + Sbjct: 64 LLQQIR-KTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 HAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS +++ + G + LT E++++ L + + + E Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+KL+ I+TVWG GY++ + Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E F+V G D ++L + +E D +ILD+ + + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEVDLMILDVMMPGLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R S P+ ILS S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 64 TLKVR-ETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122 Query: 123 AQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G L++N D K V V+G I LT EY ++ LL + + Sbjct: 123 GNMNQQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDEIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231 >gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 235 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 107/231 (46%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + +I + L+ E + GE+ ++L K E I++D+ + + G Sbjct: 5 RVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKMDGIV 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +L+ S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 65 TTSLIR-EFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLM 123 Query: 122 HAQSLIVTGDL----------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +NL K V + LT E++++ LL K + Sbjct: 124 LGAKSSNQQTTDEGTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSI 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + V I K+R+K+ Y++ VWG GY + Sbjct: 184 NDIYERVWDEPGYNAENTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234 >gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L + V G DG+ +D I+LD+ L + G+ Sbjct: 1 MKLLIVEDEVKAGEYLQKGLVESGYVVDWVRDGVDGLYHATSEPYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ IED+VRG + GA+DY+ KP+ EL+ARI+ + R Sbjct: 61 QVLNTLRSSDIHTPVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHT 120 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DL +++ + G I LT KEY ++ELL ++ L++ + Sbjct: 121 SSRVQTSSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV I +LR K+ + I T+ G GY L Sbjct: 181 LVWDMNFDSDTNVIDVAIKRLRNKV-DKPFETPLIHTIRGMGYKLEAP 227 >gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|225572220|ref|ZP_03781084.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM 10507] gi|225040282|gb|EEG50528.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM 10507] Length = 224 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD L+ I L+ E++ V D E E ++LD+ L D G E Sbjct: 3 RILLVEDDLLLSEGISYALRKESYLVDCADSIEKAWECLNKG-PSLVLLDVNLPDGDGRE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR A PV L+ S +D + G +G DDYI+KPF L +I +++ Sbjct: 62 FLKRLRSANKV-PVVFLTARDSEKDMLEGFDAGCDDYITKPFPISVLSRKIGLLLKGVAY 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 +SL GD + K + +Q + LT E +++E + LT+E L +++D Sbjct: 121 LDKSLYYQGDFVYDYAKKELTIQNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + ++V + +LR+K+ YI T++G GY +E Sbjct: 181 YENFVDERTLNVNVRRLREKIEKDPKNPRYIVTMFGIGYKWKE 223 >gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196] gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291] gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196] gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + I ++ + + G + + + K D +ILD+ + + GF Sbjct: 3 KILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R R + P+ IL+ EDK++G + GADDYI+KPF+ + L+A++ A++RR Sbjct: 63 VCRVSR-EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + + + ++ V V+ I LT KE++++ L N ++E LN ++ Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LRKKL ++I T+ GY Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220 >gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 227 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L F V + G DG+ ++D ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL +R A PV LS ++D+V+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 AVLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + + DL ++L + V G RI LT KE+ ++ELL R++ L + + + ++ Sbjct: 121 KGSSTEFLRAADLELDLLRRRVTRAGKRIDLTSKEFALLELLLRRQDEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V + +LR K+ + I TV G GYVL A Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKVDDNF-EPKLIRTVRGMGYVLESPA 225 >gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] Length = 249 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 121/240 (50%), Gaps = 7/240 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+ + + L+ ++V + G G L D I+LDL L + GF Sbjct: 4 RILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFT 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 64 VCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 123 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L++ + + LT E++++ L R T+ Sbjct: 124 DRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L A+ E ++ + Sbjct: 184 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPAETELHQHAD 243 >gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49] Length = 220 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ L+ F V GE + ++ I+LDLGL G Sbjct: 1 MRILLVEDDEQIGSGVQRGLRHSGFAVDWVRDGETASTALRSTQYGLILLDLGLPKQDGS 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR TPV I++ +I D+V GL +GADDY+ KPF EEL+ARIR + RR Sbjct: 61 TVLARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q++ +G L ++ V + + +T +E+ ++E L R N +T+E LY Sbjct: 121 GSVQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LR+KL I TV G GY + E Sbjct: 181 WNEEVESNTVQVHIHHLRQKLGTD-----VIVTVRGIGYRIGEPG 220 >gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ANDSASFGSLVIDRAAMTVTKNGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 224 >gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + I L+ + V+ G++ +E + D IILDL L D+ G E Sbjct: 6 RVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLMLPDMTGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +A+R P+ +L+ + + GL GADDY++KPF+ EL+ARI A++RR Sbjct: 66 ICKAIRKKSRV-PIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRRVSE 124 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL V++ + V +G I+LT EY+++ L T T+E +N Sbjct: 125 EAVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELIN 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++ID + LR+KL YI TV G GY L Sbjct: 185 AVLGEDYDGYDRVIDTHVKNLRQKLETNPKEPEYIITVHGTGYRL 229 >gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ L++E V+ G D + L + + II+D+ + + G + Sbjct: 5 KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDALMLLEEKDIHLIIMDIMMPRMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDYI+KPFN ELVARI++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K V V I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGTLVLDKKRKIVTVDEKEIRLTPIEYRILELLIENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 230 >gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland 1988] gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S] gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] Length = 225 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Salinibacter ruber DSM 13855] gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Salinibacter ruber DSM 13855] Length = 253 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 R+L+ EDD L S+E + V+ GED + E+ +D ++LD+ L GF Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 EVLR R + + +PV +L+ E K+RG GADDY++KPF+ +EL AR+ A + Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRSQ 133 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++SV+ +TV + LT E+ ++ + T+++E L Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQLLRD 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + ID + LRKK+ Y++TV+G GY + Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKFVTD 240 >gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD ++A L+ F V + GE+G++ +D IILD+ L + GFE Sbjct: 3 KILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R A + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I ++++ A+ V + G T KE+ ++ L + N L+KE Sbjct: 122 LAGKQTQTNTIFVHGITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +V + V I K+R K+ ++ETVWG GY Sbjct: 182 KIWGLESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGYRF 226 >gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 3/228 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D++++ + + K + + + G++G+ Y+ D I+LD+ L DI G Sbjct: 1 MKTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 FEV + +R P+ +++ ++ +D+V GL GADDYI KPF+ +E++ARIRA+ R Sbjct: 61 FEVCQCIR-KVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRT 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ V G+L + V + G+ I+LT KE +++ LL+ ++E+ L+ + Sbjct: 120 EDNPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + +D + +LR KL I+T+WG GY K Sbjct: 180 WGYSGESYDRAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGYSFAYEEK 227 >gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 223 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 134/228 (58%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L+ G+ Sbjct: 1 MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE ++ I LRK + K I TV G GYV A+DE Sbjct: 181 FDDEVFSDVLRSHIKNLRK-KVDKGFKKKIIHTVRGIGYV----ARDE 223 >gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A L+ F V V + G+ G++ ++D +ILDL L GF+ Sbjct: 3 KILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVR-DVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G T KE+ ++ L+ N +KE Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRFK 228 >gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S I G+L+++ + V + G + L+ +E+ ++ L R L+K +Y Sbjct: 121 GRSESTIRHGNLTLDPASHQVTLDGAPVALSAREFALLAALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGA-----ELIRNVRGLGYMIAKEA 220 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEKDTYI-MMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + ++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 4 ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +G S+N+ + + G + LT EY ++ L + ++++ LN ++ Sbjct: 124 DEKADMITSGPFSLNVIEERLYKNGQLVDLTPTEYMILHYLMNQAAKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+KL I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKLECNPSEPEXILTVWGKGYVWKESIR 229 >gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 223 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L ++E L++ F V GEDG L +DA+ILDLGL I G Sbjct: 1 MRVLVVEDEPQLTLALERALEAAGFAVDTAYDGEDGWHLGDTESYDAVILDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV +L+ + +K + +GADDY++KPF EE+V R+RA++RR+ Sbjct: 61 SVLGRWREAGRAMPVMVLTARARWAEKSQAFNAGADDYVTKPFEMEEVVTRVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA I G L ++ V G I LT +E++++ L+ + +++ + H+YD Sbjct: 121 GHASPEITCGPLRIDTVGGRVSRAGLPIALTAQEFRILSYLAHHQGRVVSRSELVEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P+ ++DV + ++R+KL I T+ G+G+ + Sbjct: 181 RDADPDSNVLDVLVARIRRKLGVD-----VIHTLRGQGWRME 217 >gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 239 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEDAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+++LA I+ L+ E + V G++G+EL + + I+LD L G Sbjct: 5 KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWMLPVYDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 VLR +R P+ +L+ + D L G DDY++KPF EEL ARIR I R Sbjct: 65 VLRRIR-KVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R S + L ++L + +G I+LT KEY ++ L +++ L+ Sbjct: 124 EKRQVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + +DV+I LR KL +N I+TV G GY LR+ +E Sbjct: 184 VWGYDFVGQTNTVDVYIRALRNKLGKY---RNLIKTVRGYGYCLRKVDNNE 231 >gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 652 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 1/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L + L+ + + V G G + + +D I++D+GL G Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +++ + D++ GL +GADDY++KP + EL AR+RA++RR Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L ++ + V ++LT KEY ++EL ++ + HL+ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D P + + + LR+KL AAG ++IE ++G GY L ++ Sbjct: 181 FDDPPLEESVKAHVKGLRQKL-KAAGAVDWIENIYGIGYRLNPPDSEQKS 229 Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD I L+L+ ++ + + + D +ILD+ + G E+ Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 ++LR P+ L+ E + GADD+++KP Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPV 484 >gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC 43970] gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC 43970] Length = 239 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ ++ G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYSTQWITNGAEVVAAVRQAPPAMILLDLMLPGSDGITI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWEAE 234 >gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219] gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219] Length = 232 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+K + ++++ L E+F + G++ +E+ + + D +++D+ + + G + Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + +R + P+ LS EDK+ GL GADDYI+KPF+ EE++ARI+A +RR Sbjct: 63 ATKEIR-KNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKE 121 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q + + G +++N K V V G I LT EY +++ LT + Sbjct: 122 LGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQ 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ I V I LR+K+ YI+ VWGRGY Sbjct: 182 EVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >gi|240172611|ref|ZP_04751270.1| DNA-binding response regulator MtrA [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF] gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE] gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU] gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056] gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058] gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059] gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE] gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii] gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2] gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] Length = 254 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254 >gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 223 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ + DL V+L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + +L +E + VY G++ +E+ + + D ILD+ L DI GF+ Sbjct: 3 KILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVMLPDISGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+++R K PV +L+ DK+ GL GADDYI KPFN E++AR++ +RR + Sbjct: 63 VLQSIR-EKQFFPVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLRRYQT 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + L+++++++ V + I LT E+ ++ L + ++ E Sbjct: 122 YNSQSIDETNEYAKNGLNISVNSRKVFLYDEEIKLTPIEFDILWYLCRNEGRVISSEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I K+R+K+ N I+TVWG GY + + Sbjct: 182 EKVWKEDYLENNNTVMAHIAKIREKMHEKPRQPNIIKTVWGVGYTIEK 229 >gi|317126118|ref|YP_004100230.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590206|gb|ADU49503.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 224 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA ++ L+SE F+V V G DG + FD I+LD+ L + G+ Sbjct: 1 MRVLVVEDERPLAAALRRSLESEGFSVVVALNGVDGDWQAQEQTFDVIVLDVMLPGMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R STP+ L+ D+ L G DD+ISKPF+ L AR+RA++RR+ Sbjct: 61 DICRNVRARDDSTPIVFLTAKDGEYDEADALDIGGDDFISKPFSPVVLAARLRALLRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V G L + + + + LT +E ++ L+ R + ++K L H++D Sbjct: 121 EGPEPSVVVGSLRLEPAKQRAWLGADELRLTAREMALVRYLAHRVDHVVSKTEILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +++V+I +LR+KL+ IETV G GY L Sbjct: 181 QAFEGDANVVEVYIGRLRRKLATQPDVA--IETVRGLGYRL 219 >gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 237 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD L + L SE + V G +G++ ++ ++LD+ L + GF+ Sbjct: 4 RILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +L+ D++ GL+ GADDY+ KPFN ELVAR+RAI RRS Sbjct: 64 VLRRIR-QNTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 L+ GD+S++L A+TV + LT E+ ++E L + ++++ Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + IDV + LRKKL AAGG+ I++V G GY+ Sbjct: 183 RQALGREFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGYI 227 >gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis SK121] gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis SK121] Length = 225 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ LA +I L +E F V G+DG EFD I+LD+ L G++ Sbjct: 3 RVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFATACSDEFDVIVLDIMLPGKHGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R LR +I TP+ +LS D GADDY+ KPF+ L+AR+RA+VRR Sbjct: 63 IVRDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGAP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ GDLS++ V G + LT +EY ++E L +TK + ++D Sbjct: 123 QRPAILSVGDLSLDPAKHQVSRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + I++V+I LRKKL + G IETV G GY A Sbjct: 183 NYEGDENIVEVYIGYLRKKL-DLPFGTQSIETVRGVGYRFVGTA 225 >gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 ICQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I L+++++++ V + I T KE+ +IELL+L +KE + Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R KL N+I TVWG GY +N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227 >gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +++ ++ L+ E + V G++ +E + ++ D ++LD+ + + G++ Sbjct: 3 KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPRLSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L + + +L+ I DKV GL+ GADDY++KPF+ E++AR++A+ RR Sbjct: 63 VCRKL-EDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q +I L++NL +T+ +G + LT KE+ ++ LL+ ++E Sbjct: 122 PEAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREA 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L ++D + +D+ + +LRKKL I+TV+G GY Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLG---NQHEVIQTVYGIGYK 225 >gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ L++E V+ G D + L + + II+D+ + + G + Sbjct: 5 KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K V V +I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGTLVLDKKRKIVTVDEKKIRLTPIEYRILELLIENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 230 >gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] Length = 219 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD +LA ++ L+ +N+ V G + + + + + D ILDLGL D+ G Sbjct: 1 MHILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPDMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++ + IL+ S E+K+ GL SGADDY++KPF +EL+AR+R + RR Sbjct: 61 EVLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL+ GD+ ++ V + G + L+ +EY ++ L T+ + N LY Sbjct: 121 SAKTSLVAVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +E ++V I LRKKL + +I+TV G GY Sbjct: 181 WGEEVSSNALEVHIHNLRKKLGSD-----FIKTVRGVGYR 215 >gi|331091977|ref|ZP_08340809.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402876|gb|EGG82443.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium 2_1_46FAA] Length = 250 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + ++ ++L++EN+ V D GE +EL D +ILD+ + + G Sbjct: 14 KIMVVDDDADIRQALRVLLETENYEVSEADNGEMALELL-DETVDLMILDIMMPEKDGLS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R K + P+ L+ ++ DK G SG DDY++KPF+K E++ R+ A++RR Sbjct: 73 TCREVR-EKYTFPILFLTAKTTENDKYVGFLSGGDDYLTKPFSKMEVLTRVSAMLRRYHV 131 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I DL ++ + V I LT EY ++ ++ N T E Sbjct: 132 YQGKGSESKEKYICIKDLKIDRNVSRVFQGDKEIVLTNTEYDILVFMAKNPNRVFTLEEL 191 Query: 175 LNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ V + V I LR+KL++ + YI+ VWG+GY + + + Sbjct: 192 YEKIWGEPYHFSVNATVMVHIRNLRRKLNDTSQASRYIKNVWGKGYAIVDETNE 245 >gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC 9905] Length = 239 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 220 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ + ++ L + V GE+ +EL FD ILD+ + I G+ Sbjct: 3 RILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVPKIDGWT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + R +R P+ +L+ S+ +D++ G GAD+YI+KPF+ + L+AR++ + R+ Sbjct: 63 ICRKIRKESKI-PIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDT 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G L ++ + V + LT KEY M+ ++ K+ +++E FLN ++ Sbjct: 122 KTEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +D + +LRKKL +I+TV G GY E Sbjct: 182 FDYYGDLRTVDTHVKQLRKKLK-----GKHIKTVRGVGYRFEEE 220 >gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ LA I ++E F V + G+ G L + +D +ILD+ L + GF Sbjct: 1 MKLLVVEDDQKLASFISKGFEAEAFEVTIAPDGQAGWRLFQANPYDVVILDVNLPYLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R PV +L+ + + DK G SGADDY+ KPF EL+ R++A+ RR Sbjct: 61 ELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRHY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q ++ DL ++ DA+ V G I LT EY ++E L + +++ +++ Sbjct: 121 RERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV++ LRKK+ + TV G GYVLRE Sbjct: 181 VNLATSTNVIDVYMGYLRKKVDRDFAS-KLLHTVVGMGYVLREE 223 >gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] Length = 224 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++++ + I+ L+ + V + G +GIE + + D ++LDL L I GF V Sbjct: 5 ILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLMLPKIDGFAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ + + +++G + ADDYI+KPF+ ++ I A++RR+ Sbjct: 65 CEILRKE-SRVPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVLRRAEQG 123 Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I +++V+ D+ TV V + LT +E+++++LL + +++E L+ ++ Sbjct: 124 GAAPNTVIRYKEITVDTDSLTVLVGTGSVSLTTREFEILKLLLENQGRVVSRERLLDTVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + KI++ I +RKKL YIET+ G GY + + Sbjct: 184 GYDYIGDEKIVNTHIKNIRKKLGVD-----YIETMRGAGYKIEKE 223 >gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ F + + + + D ++LD G + Sbjct: 4 RILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWMFPGGNGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ EDKVRGL+ GADD+++KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRRS 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I L ++ + V V + + E++++ + ++E L+++ Sbjct: 124 APTCLEEIIDVQGLQLDPVSHRVTVNDQVLDMGPTEFRLLHFFMTHQERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK ++ +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVTP-SGHDRLIQTVRGAGYRF 225 >gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703] gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 239 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAIISFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 220 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ ++H +EL L E V V G D + + ++ D +ILD+ L + G Sbjct: 1 MKILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVEDFKPDVVILDIMLPGLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + +L+ + ++DKV + GADDY+ KPF+ EEL+ARI+A+ RR Sbjct: 61 EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRKE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + + +D V + G + L+ E+ ++ LL +N L+KE L+ ++ Sbjct: 121 KKEEIISKHG-IELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ +++V+I LRKKL YI+T+ G GY R++ Sbjct: 180 DYDDERENLVEVYINYLRKKLGERG---KYIKTIRGVGYSFRKD 220 >gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 243 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 4/237 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA I L+ EN+ V + GED +E ++ FD IILD+ L I GF Sbjct: 7 HILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFA 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +L+ S D++ GL GADDY++KPFN E + R+ ++RRS Sbjct: 67 VCREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRSAW 126 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G + L + + I LT E +M+ L ++ + ++ L Sbjct: 127 YRPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLES 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 ++ + E + +D FI +LRK Y +TV G GY A+ + E E Sbjct: 187 VWGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRFSREARGQRNEDKE 243 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GAD+YI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEKDTYI-MMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + ++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu007] gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu007] Length = 254 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 89 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 148 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 149 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPPE 254 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E + G D + + D +ILD+ + + G E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L LR PV L+ ++ D+V+GL++GADDY++KPF+ +E+ AR+ ++RR+ Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +++ DL++++D+ V G I LT E++++ L L+K+ L+ + Sbjct: 132 TQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +V +++++I LRKK+ A I TV G GY++RE Sbjct: 192 WSYDFGGQVNVVELYISYLRKKI--DADRPALIRTVRGAGYIMREP 235 >gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 605] gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 605] Length = 263 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 38 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 98 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 157 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 158 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 217 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 218 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPPE 263 >gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 238 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 10/227 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED+ ALA + L+ + F V VT G D + L + + D ++LDLGL + G EV Sbjct: 9 MVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGLPGLDGVEVC 68 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ + D + GL GADDYI+KPF+ EL ARI+A +RR R Sbjct: 69 RRLRTFSDAY-VVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRTGF 127 Query: 124 Q---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 V GDLS+++ + V V G +HLT E+ ++ LS T ++ Sbjct: 128 TGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRARL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + ++DV I +R+KL + A Y+ TV G GY + Sbjct: 188 IDTVWGPEWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGYRM 234 >gi|296393679|ref|YP_003658563.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180826|gb|ADG97732.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L + V + G + + DA++LD+ + + G Sbjct: 1 MDILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVMMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ ++ ++V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120 Query: 121 GHAQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ T S++ + V I LT E+ ++E+L LT+ L Sbjct: 121 PQAEPGAETLAFLDLSLDPATRDVRRGDREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V+I LR+K I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRKTEADGEN-RLIHTVRGVGYVLRE 225 >gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 232 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTITSGPFLLNIVEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD L + +L E F V V + GE+G++L F+ ++LD+ + + GF Sbjct: 3 KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR TPV +L+ +D+V GL++GADDY++KPF+ EL+AR+RAI+RR++ Sbjct: 63 MLARLR-KTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + DL + + G + LT E+ ++E L ++K Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLS 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + EP + ID+ + LRKKL G+ +TV GRGY+ E A Sbjct: 182 ELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231 >gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ + D +ILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++A+R P+ ++S ++ DK++GL +GADDY+SKPFN E++AR+++++RRS Sbjct: 61 IEVIKAVRKDSQV-PILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + G L + D+ V G +I LT E+ ++ LL+ N + + Sbjct: 120 QQQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ IETVWG GY + Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +E+ +++E + + G + +E+ K + D IILD+ + + G E Sbjct: 6 ILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQMDGIEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R + P+ +LS S DK+ GL GADDY++KPF+ EL+ARI++ +RR + Sbjct: 66 CMKIREENNT-PIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYKHL 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ I +L VN+ + V V G I LT +E+ ++ +L++ + L+ + Sbjct: 125 NSRSVRNENEIQIDELIVNVASHRVTVAGEEIKLTPREFALLHMLAINRGLVLSMDKIYT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I KLR+K+ YI+TVWG GY + Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230 >gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L +E + V V G +G+ D ++LD+ L + G+ Sbjct: 1 MRLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V ALR A PV +L+ D+ GL +GADDY++KPF+ LVAR++A + RR Sbjct: 61 RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ GDL V+ + V G + LT KE+ ++E L+ R + + K L H++ Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E + I++V+I LR+KL I TV G GY L Sbjct: 181 DFAYEGDPNIVEVYISALRRKLGAD-----RILTVRGAGYRLV 218 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 132/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L S+ L+ EN+ V G +G + E+D I+LD+ L + G+ Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ LR ++PV +L+ +++D+V+GL GADDY++KPF+ EEL+ARIRA++RR+ Sbjct: 72 EFLQKLRP-TKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ DLS++ A+ V +G + +T +EY +IE L+L + +++ HL+D Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D ++DV + LRKKL+ I T G GY + Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLA-----PELITTRRGHGYSIE 227 >gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 226 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 134/227 (59%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD+ +A+ + L+ +F V G++G+ + E+D +I+D L + G Sbjct: 1 MKALVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R TPV ILS + ++D+V GL+ G DDY++KPF+ EL+ARI +++RR+R Sbjct: 61 SIIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ DL ++L A+TV+ G I + +E++++E L +T+ M L + Sbjct: 121 QAAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ ++TV G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFDTP-LLQTVRGAGYMLRETA 226 >gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 12/241 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD ++A + L+ E F+V G G L + D ++LD+ L + G EV Sbjct: 8 VLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLPKLSGLEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +L+ D+VRGLQ GADDYI KPF+ +ELVARI+AI+RR + Sbjct: 68 CELIRRESVV-PIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRRQLD 126 Query: 123 AQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +GD ++ A+ V + ++ L+ +E++++ LL L++ Sbjct: 127 RGDALPSGDRDRIAITSIVIDRVAREVWRKKKKLELSWREFELLWLLMEHVGKALSRHEI 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L+ ++ + K +DV+I LR+K+ YI+TV G GY + +T E Sbjct: 187 LDRIWGEDWVGDPKTLDVYIRWLREKIEKNPSAPEYIQTVRGYGYRFTDP---QTPENER 243 Query: 235 T 235 + Sbjct: 244 S 244 >gi|225871922|ref|YP_002753376.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225793413|gb|ACO33503.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 234 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL++DD AL +E L E + V GE +EL + D ++LDL L G Sbjct: 1 MQVLLVDDDGALTRFLERGLAEEGYTVTSAADGEAALELLEAMLPDLVVLDLNLPRRDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ALR PV +L+G S + +VR L GADD + KPF+ EL AR RA++RR Sbjct: 61 EVLAALRARHAEVPVLVLTGRSEVASRVRCLDLGADDCLLKPFSLAELKARCRALLRRRG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ DL VN TV+ G + LT EY ++E L L + +++ L ++ Sbjct: 121 GTAHLVLRHEDLEVNRVEHTVQRGGREVALTRTEYALLECLMLHRGRPVSRARLLEEVWH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E I+DV++ LR+KL + I+TV G GY Sbjct: 181 ESAENGTNIVDVYVNYLRRKLGDEGPAP-LIQTVRGLGY 218 >gi|169826282|ref|YP_001696440.1| two-component response regulator; MrsR2 protein [Lysinibacillus sphaericus C3-41] gi|168990770|gb|ACA38310.1| probable two-component response regulator; probable MrsR2 protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 10/235 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ LA+ +++ L+ E + +Y D + D ++LD+ L D G++ Sbjct: 6 ILVVDDEADLANLLKVSLQKEGYKQIYTAGSIHDAWTSFQQTSPDIVLLDVMLPDGEGYD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV +S + DK+ GL G DDYI+KPF+ +E+ R++A +RR Sbjct: 66 LCRRIR-EISHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRVGY 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I G +N D V G + LT KE ++ + L+KE Sbjct: 125 QTHETTSGMAEKTIQVGPFQLNADETEVHKDGILLELTAKEIGLMACFMHNPHRILSKET 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + V I +LR+K+ A +I TV G GY + + Sbjct: 185 LFERVWGEDFFGSDNTVMVHIRRLREKIEQDASKPIFITTVKGLGYKFVIPKEAQ 239 >gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMAAAGYVVDRAYDGEEGHYLGDTEPYDAVVLDIGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G L ++ V G + LT EY+++ L + +++ + HLYD Sbjct: 121 GHASSELVCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R E DET Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRIRSEEGGDET 225 >gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 230 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L+SE F V G++ + L + D I+LD L + G EV Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEV 68 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + S P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R+ R Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V G + L E++++ + ++E L+ ++ Sbjct: 129 PSSVGLTLEFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L GG++ + TV G GY L Sbjct: 189 GRDIYVDSRTVDVHVGRLRKAL-CVHGGEDPVRTVRGAGYAL 229 >gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ ++ + L+ + V V G + Y++D II D+ + ++ G++ Sbjct: 4 KILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +AK + P ++ S DK+ L GADD+ISKPF+ ELV R++ I+ R G Sbjct: 64 FIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNRIYG 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GDL ++ + V++ ++LT K + ++ +L+ N +K ++ Sbjct: 124 KTNESQCLVIGDLVIDQSTRVVKIANQNLNLTNKAFDLLWILANHSNHVFSKTELYEQVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + ++V I LR L+ + + I+TVWG GY L Sbjct: 184 GEEYLDDTNTLNVHIHSLRNDLAKYSTDQTPTIKTVWGLGYKLE 227 >gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] Length = 229 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MEVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N D+ V ++ I LT E+ ++ LL+ N + + Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIERKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 237 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+K ++ ++L L E + V + G +G+E +D IILD+ L +I G EV Sbjct: 5 VLVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVMLPEINGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R TPV +++ ++ DKV GL GA+DYI+KPF EEL+AR+RA +R Sbjct: 65 LKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQMEP 124 Query: 123 ----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S + L + + V +G+RI LT KE+ ++ L KN L ++ Sbjct: 125 IATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQRD 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + ++DV+I +RKK+ + K I+TV G GY +RE Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKI-DHGYKKKLIKTVRGVGYCIREEE 236 >gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +++++D+ A+ S+ L+ E + V V G G+ L + D ++LD+ + + G Sbjct: 1 MHLVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + PV +L+ + + D+V GL +GADDY+ KPF +EL+AR+RA++RR+ Sbjct: 61 EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120 Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H D++++ + V +HLT E+ M+E LT+ + Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +DV++ LR+KL G + TV G GYVLRE Sbjct: 181 FENVWGYDFGTASNGLDVYVSYLRRKLEAD-GEPRLLHTVRGVGYVLREE 229 >gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces pristinaespiralis ATCC 25486] gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces pristinaespiralis ATCC 25486] Length = 228 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 STDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224 >gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 232 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 234 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L+ E +++ GE+ +E+ K E +I+D+ + + G Sbjct: 8 ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGIRA 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ILS + DK+ GL GADDY+ KPFN ELVAR+++ +RR Sbjct: 68 TLKIREESSI-PIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 126 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ G LS+N D K V V G + LT EY ++ LL + + Sbjct: 127 GNAAESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + +N Sbjct: 187 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234 >gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 STDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221 >gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10] gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar Microtus str. 91001] gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Antiqua] gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Nepal516] gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Pestoides F] gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola] gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis KIM 10] gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis biovar Microtus str. 91001] gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua] gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola] gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D106004] gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D182038] gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 74 CREIR-RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L +N QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWEAE 234 >gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C] Length = 228 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E V G+ G L + +D +I+D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHTADVAYDGDTGYTLAETVNYDVMIIDRMLPYRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR I TPV ILS + ++D+V GL++G DDY++KPF EL+AR+ R++ Sbjct: 61 SIITELRAKGIKTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ G I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPEK 226 >gi|255535917|ref|YP_003096288.1| Phosphate regulon transcriptional regulatory protein phoB [Flavobacteriaceae bacterium 3519-10] gi|255342113|gb|ACU08226.1| Phosphate regulon transcriptional regulatory protein phoB [Flavobacteriaceae bacterium 3519-10] Length = 227 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+D++ + + L+ E + V+ G +GI+ K D I+LD+ + + G E Sbjct: 7 KILLIDDEQDILEILSYNLQKEGYEVHTAQNGNEGIQKAKEIVPDLILLDVMMPEKDGIE 66 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 + LR T + LS S ++ G Q+GA+DYI K + L++++ A+++ Sbjct: 67 TCQDLRKLPDLQKTLIVFLSARSEEFSQLAGFQAGANDYIVKIIKPKVLISKVNALLQLT 126 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ I GDL ++ D V G + L KE+ ++ LL+ N +E L Sbjct: 127 SNVYDSKKTITAGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTNKVFKREEILEK 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I +LR+KL I+T+ G GY L Sbjct: 187 VWGNDVIVGERTIDVHIRRLREKLGIGT-----IQTLKGIGYKLV 226 >gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 242 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL + L F V G+ + + DA++LD+ + I G + Sbjct: 9 RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR PV +LS + + D++ GL +GADDY+ KPF+ EL R+RA++RR R Sbjct: 69 VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRP 128 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + ++ DA+TV G + LT +E+ ++E+L LT++ L+ ++ Sbjct: 129 VPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWGY 188 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR+KL + TV G G+ LR Sbjct: 189 DFQVRSDAVDTVVSYLRRKLEAD-DRPRVLHTVRGVGFALR 228 >gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753] gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753] Length = 233 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A IE+ LK+EN+ V+ + +E D ILD+ L DI GF Sbjct: 4 KILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPDISGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + + PV +L+ + DK+ GL GADDYI+KPF E+VAR+++ +RR + Sbjct: 64 LCQKIR-ERYTYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRRYKK 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + +I+ +L++++ + I LT E+ ++++L + ++ E Sbjct: 123 YNVTLPEEKRHIILYSNLTLDIKKHECLLNDKPISLTPTEFSILQILLENRGIVISGEEL 182 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I +LR+KL + YI+T+WG GY + E Sbjct: 183 FHRIWKDEYYTKSNNTITVHIRRLREKLGDTLENPKYIKTIWGVGYKIEE 232 >gi|83643824|ref|YP_432259.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631867|gb|ABC27834.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 244 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + + ++V G+DG+ +D I+LD+ L G+E Sbjct: 16 RILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDGLNKSLNGAYDLILLDVMLPGKNGYE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + A+R+ P+ +L+ SS ED + GL GADDY++KPF+ +LV R++A++RRSR Sbjct: 76 ICEAVRLKDRDQPIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRRSRS 135 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G L ++ + + +G + T +E +++ L +++E LN + Sbjct: 136 ASLDDAHICLLGGLEIDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELLNKV 195 Query: 179 YDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E + +D+ I KLR+K+ + TV G GY L Sbjct: 196 WGYARDLDIETRTVDIHIAKLRRKIEADPKQPQRLVTVRGGGYRL 240 >gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 227 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A + L+ F+V G + + + D ++LDL L G E+ Sbjct: 5 ILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLPGRDGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +RV S P+ +++ D++ GL+ GADDYI KPF+ E+VAR++A++RRS Sbjct: 65 CKDVRV-FSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGPG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ + GH + LT E+++++ L+ +++ ++ +Y Sbjct: 124 QTTALAG--LVMDGACYRAALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIYPDE 181 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ID I KLRKK+++ A G++ I +V+G GY ++ E Sbjct: 182 RVVADRTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFERASRRE 227 >gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044] gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43] gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185] gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088] gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43] gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088] gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185] gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 244 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 11 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 71 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 130 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 131 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 191 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 241 >gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314] gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB [Corynebacterium efficiens YS-314] gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314] gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB [Corynebacterium efficiens YS-314] Length = 240 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K LA +E L F G D + + + D +ILDLGL ++ G E Sbjct: 14 RVLIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S EDK+ GL GADDYI+KPF ELV R+RA++RR R Sbjct: 74 VCRQVRAFSDCYILML-TARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRI 132 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A TV V G + +T E+ ++ L+LR ++ + Sbjct: 133 TVTGPGTDAPLIIGDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +I+DV I LR+KL A G+ I+TV G GY L Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237 >gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ + ++ L+ + V + G +G+ L K E+D I+LD+ L I G+ Sbjct: 1 MRILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPSIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ + D+V+GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 TVLKTLR-ATQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL V++ + V+ G RI LT KE+ +++LL R+ LT+ ++++D Sbjct: 120 PRENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + +++V I +LR K+ + I TV G GYV Sbjct: 180 MNFDSDTNVVEVAIRRLRGKVDDDFPV-KLIHTVRGVGYV 218 >gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGEKAKH---IGTVIRVGYKFEE 225 >gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 226 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ +A I+ L + F V + I FD +ILDLGL D G + Sbjct: 3 KILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGLPDKDGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+ LR + P+ IL+ I DKV GL+ GADDY++KPF EEL+AR+R +R++ Sbjct: 63 VIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAPA 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ ++S++L + V+V G + L +E+ + E L++E L Sbjct: 123 AGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ P I+DV++ LRKKL IETV G GY LR++ Sbjct: 183 DRVWGYDYSPGSNIVDVYVGYLRKKLGAD-----LIETVRGIGYRLRQS 226 >gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 246 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ ++V + G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + P+ +++ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILSFGPLTLVPERFEAVWFEGVVKLTHLEFELLHCLLQRHGQTVSPSDI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +++ I V I LR KL YI+TV+G GY L Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513] gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10] gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94] gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1] gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1] gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13] gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1] gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1] gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94] gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99] gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94] gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13] gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1] gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1] gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2] gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1] gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94] gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1] gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1] gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13] gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2] gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653] Length = 229 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224 >gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 235 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 6/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ ++ + L+ + F+ ++ + DG+ + + D IILDL L D G EV Sbjct: 7 ILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTLPDADGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + P+ ILS SS DKV L GADDY++KPF+ ELVAR++A +RR Sbjct: 67 CRKLRT-LTAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRLADP 125 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q L+ LS++ A+ V I L+ KE+ ++ L+ N TK L+ Sbjct: 126 KFKATTQQLLRFDSLSIDKTARKVMAGHLEISLSAKEFDLLYFLASHPNQVFTKSQLLDQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E I V+I +LR+KL + +YI TVWG GY + Sbjct: 186 VWGYSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGYKFDPEETE 235 >gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] Length = 230 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L +E + VY G +G+ K + IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVMMPEMDGI 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R +T V L+ +V G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 119 SRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A+ + GDL +N + + +G + L KE++++ LL+ + N +E+ Sbjct: 126 FKEGAVTAEAEDITSVGDLIINREEYKIVHKGIEMVLPRKEFELLALLASKPNKVFKREV 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + IDV I KLR+K+ + +TV G GY Sbjct: 186 ILDKVWGNEVVVGGRTIDVHIRKLREKIGDNNF-----KTVKGVGYKFV 229 >gi|330505552|ref|YP_004382421.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01] gi|328919837|gb|AEB60668.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01] Length = 230 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+D+ + + + L ++++ V GEDG+ + D ++LDLGL D+ G +V Sbjct: 7 ILLIDDEAQIRKFLRIALSAQDYRVLEAVNGEDGLAQAALHNPDVVVLDLGLPDLDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR PV +LS +S +KV L GA+DY++KPF +E +AR+R ++R+ +G Sbjct: 67 LRGLR-EWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQGQGR 125 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G LS++L + V ++G I LT KEY ++ LL+ +T++ L ++ Sbjct: 126 EALPASIACGALSIDLAYRRVSLEGAEIALTPKEYAVLALLAQHLGRVVTQQQLLRDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + V + LR+KL + Y+ T G GY LRE Sbjct: 186 PSHVGDSHYLRVVVGHLRQKLGDDPAAPRYLITEAGVGYRLREPV 230 >gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] Length = 228 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++ + V V G +G++ FD I+LD+ + ++ GFE Sbjct: 12 HILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + +D+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 72 VAKMIRSQSNI-PIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + ++ V+ DA V + I LT KE+++++LL K +T+E + ++ Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ID I +RKKL + YI+TV G GY + E Sbjct: 191 YEYHGETRMIDTHIKNIRKKLDIS-----YIKTVKGIGYKIDE 228 >gi|229172679|ref|ZP_04300237.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610811|gb|EEK68075.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 218 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 2/216 (0%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 +DD + + + L+ E F Y G D ++ + D +ILD+ + ++ GF+V L Sbjct: 2 DDDPHIRELVSVFLEREGFQTYEAIDGLDALKKIDEVKVDMVILDIMMPNMDGFDVCFEL 61 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126 R P+ +L+ KV+G G DDY+ KPF+ ELV R++A+++R + Sbjct: 62 R-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 120 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 I G++ +N V L KE++++ L + T ++E + ++ E Sbjct: 121 IQVGNVLLNRKTFEVTAGEQTATLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGN 180 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +DV I +LR+K K I+T+ G GY L Sbjct: 181 ERTLDVHINRLREKF-QVEKSKFSIKTIRGLGYRLE 215 >gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + +I ++L+ E + V G +EL + +I+D+ + + G Sbjct: 5 ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVMMPKLDGLSA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + + P+ +LS S DKV GL GADDY++KP+N +EL AR+++ +RR Sbjct: 65 VLKIR-ERKNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRRYTSL 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G L + + + + V + LT E +++ELL E Sbjct: 124 GDIHKADDDGCITNGRLEFHTNERVLYVDKEPVRLTATETKIMELLMKYPGRVFPAEEIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I ++R+K+ Y++ VWG GY + + Sbjct: 184 ERVWNEQGYACENTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEK 231 >gi|170684671|ref|ZP_02875896.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254685761|ref|ZP_05149620.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|170670931|gb|EDT21669.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 224 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +T V +L+ +I+ +V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTSVLLLTAKDTIDGRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 224 >gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03] gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03] gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 228 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ + +ILD+ + + G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ++S +S DK++GL +GADDY+ KPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSEI-PILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ +L+ N + + Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227 >gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] Length = 225 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 224 >gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 236 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60 IL++ED++A+ + + LK + V GE ++L + + E +LD+ L I GF Sbjct: 5 ILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + + +L+ + DKV GL GADDY++KPF+ ELVAR+ A+ RR Sbjct: 65 AVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALYRRLN 124 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ IV+GD +N ++T +G I LT EYQ+++ +T L++ L Sbjct: 125 LEAGEKEDENGIVSGDFVLNTKSRTFYRRGQPIELTQMEYQIMKYFLENPDTALSRGDIL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 NH++ E+KI+DV I +LR K+ +I TVWG GY + Sbjct: 185 NHVWGEDYFGELKIVDVNIRRLRMKVEEDPSAPRHILTVWGFGYKWSK 232 >gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104] gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium 104] Length = 254 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E + V + G + + D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RR+ Sbjct: 89 RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRAS 148 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 T GDL V+ ++ V + L+ E++++ L L++ L+ Sbjct: 149 QQPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDR 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ +G + I TV G GY+LR Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRP 252 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD+ A I + L+ E V G I+ + D I+LD+ + + G + Sbjct: 4 RILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ ++ ED + GL GADDY++KP++ EL AR+RA++RRSR Sbjct: 64 VCRILRTD-SQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G L ++ V + G I LTGKE+ ++ LL+ T+ ++ ++ Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAKD 227 + +D + LR+KL G +ETV+GRGY L + ++ Sbjct: 183 GFEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRLADPGRE 231 >gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii TW07627] gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591] gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii TW07627] gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 239 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 225 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V + G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium tuberculosis H37Rv] gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis AF2122/97] gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis F11] gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 94_M4241A] gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T92] gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM 1503] gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T17] gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 1435] gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis str. Haarlem] gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CPHL_A] gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T46] gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis K85] gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T46] gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CPHL_A] gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T17] gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis K85] gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T92] gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis GM 1503] gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 210] gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN 4207] gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN R506] gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis 94_M4241A] gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu001] gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu002] gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu003] gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu004] gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu005] gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu006] gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu008] gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu009] gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu010] gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu011] gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu012] gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN V2475] gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium tuberculosis H37Rv] gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis] gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis AF2122/97] gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis str. Haarlem] gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis F11] gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 1435] gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T46] gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CPHL_A] gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis K85] gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T17] gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T92] gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis GM 1503] gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis 94_M4241A] gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu001] gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu002] gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu003] gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu004] gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu005] gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu006] gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu008] gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu009] gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu010] gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu011] gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu012] gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CDC1551A] gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis W-148] gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 4207] Length = 257 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 151 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 152 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPPE 257 >gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 251 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L+ F V G DG+ L + ++D+ L + G Sbjct: 29 MRILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVMLPGMDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +V+ LR K++TP+ ILS S+ED+VRGL++G+DDYISKPF+ EL+AR++A I R + Sbjct: 89 KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRST 148 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+LS+NL + V + L +E+ ++E L+K M + H++ Sbjct: 149 SASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 208 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV +C+LR K+ + + T+ G GYVL+E Sbjct: 209 DYHFDPQTNLVDVLVCRLRNKIDRD-YDRKMLHTLRGVGYVLKE 251 >gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 + ++ED+ + ++ L+ + V G++G+ + D +ILDL L D+PG E+ Sbjct: 5 VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R+ P+ +LS SS ED++ G+ GADDY++KPF+ E++ R+ AI+RR+ Sbjct: 65 CKQIRL-TSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ ++ K V + I LT E+ +I +++ ++ L + Sbjct: 124 NKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQ 183 Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + IDV I LRKKL YI TV+G GY Sbjct: 184 EDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] Length = 232 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DDK + +I++ L E + V G++ I++ K E D +I+D+ + + G Sbjct: 3 KILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEVDLLIMDVMMPRLDGIR 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R +S P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 63 ATLKIR-ENMSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQ 121 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 QS TG L + D K V V G ++ LT EY ++ LL + + Sbjct: 122 LGSTARSDNQSEFRTGGLVIRDDLKEVTVDGEKVKLTPIEYNILLLLVKNQGKVFSINQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +R+K+ Y++ VWG GY + + Sbjct: 182 YENIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 230 >gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 246 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G + ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R P L+ +++D++ GL +G DDY++KPF+ EE++ R+ +V+RS Sbjct: 82 ELLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVILRLHRLVQRSG 141 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A GDL +N+D + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRYLMENPKRVISKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WDYDFGGQANIVELYISYLRKKI--DAVHPPMIHTVRGAGYVIKP 244 >gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] Length = 236 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+ I L +V E L + D ++LD L + G + Sbjct: 5 ILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMSGIDF 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR P+ +L+ +DKV GL++GADDYI+KPF+ ELVARI+A++RR Sbjct: 65 ARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRRRA 124 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A V G L ++ V + L E++++ L ++ L+ ++ Sbjct: 125 PQATEDAVELGGLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LR L + I+TV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRCALEP-SAHDALIQTVRGSGYRFSAQV 229 >gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 253 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ A+ + L + V G + + L + D ++LD+ + + G+ Sbjct: 15 KILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMPKLNGYG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + + D++ GL+ GADDY++KPF+ +EL ARI+AI+RR R Sbjct: 75 VCQKIRTQ-SEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRE 133 Query: 122 HAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L ++ + V I LT E+ ++ELL +++ L Sbjct: 134 TNANRDVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEIL 193 Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ R +++++DV + +LR K+ YI TV G GY Sbjct: 194 QELWGYAPRRIADMRVVDVHVARLRAKIEEDQRNPEYILTVRGIGY 239 >gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 234 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L +E F V+ G + L + + D ++LD+ L + G EV Sbjct: 6 ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R L V +L+ + DK+ GL GADDY++KPF+ ELVAR++AI+RR+R Sbjct: 66 CRQLHRDTSVF-VLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRVI 124 Query: 123 AQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + + + VE G R+ LT +E+ ++ L+ T+E L Sbjct: 125 RAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELLQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++DV I LR+KL + G ++TV G GY Sbjct: 185 RVWGPDFAGIDWVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKFV 230 >gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus 10329] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL +++ + G + LT KEY ++ELL + L++ + Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227 >gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + + L + E+ +ILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +IED++ GL SGADDY+ KPF EL AR+RA++RR + Sbjct: 61 TLLCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ GD+++NL + V Q + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D+P ++V I LR+KL I+TV G GY L Sbjct: 181 WQDDPGSNTLEVHIHNLRRKLGKD-----RIKTVRGVGYRLE 217 >gi|317499180|ref|ZP_07957456.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291560744|emb|CBL39544.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893539|gb|EFV15745.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 235 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +I+ L+ E++ + G + +++ E +I+D+ + + G Sbjct: 5 KILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVMMPKMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ ILS + DK+ GL GADDYISKPF +ELVAR+++ +RR Sbjct: 65 ATMKIR-ESKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 123 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I+ G L +++ K + V G + LT EY+++ LL + + Sbjct: 124 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ A Y++ VWG GY + + Sbjct: 184 IYERVWNEEAYATENTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIEK 233 >gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ + LK +F V + G DG+ E D IILD+ L + G+ Sbjct: 1 MKILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV+R LR PV L+ +ED+++GL+ GADDY+ KPF+ EL+AR+R I R Sbjct: 61 EVMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRRGK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 SGVEATSLKVADLELDLLRRRVTRAGKRIDLTSKEFGLLELLMRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +I+V + +LR K+ + A ++TV G GYVL Sbjct: 181 DMNFDSDTNVIEVAVRRLRSKI-DDAFEPKLLQTVRGMGYVLE 222 >gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 236 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 236 >gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 221 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD+ L I L F V G + A +LDLGL G Sbjct: 1 MRILLAEDDELLGSGIRAGLGQNGFQVDWVRDGVAAERELATGAYQAAVLDLGLPRQDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R + +TPV +L+ ++ ++ GL +GADDY+ KP + EL AR+RA+VRR+ Sbjct: 61 DVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALVRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ + G++ ++ A V V G + L+ +EY ++ L L L++E LY+ Sbjct: 121 GQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQRLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++V I LR+KL IETV G GY + +A Sbjct: 181 WGSEINSNAVEVHIYHLRRKLGT-----PLIETVRGVGYRIARDA 220 >gi|229122769|ref|ZP_04251978.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228660633|gb|EEL16264.1| DNA-binding response regulator [Bacillus cereus 95/8201] Length = 225 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + ++ L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLQYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++EN + G+DG++ K E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L ++L+ ++V + L KE+ ++ + + LTK+ Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] Length = 231 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A + L L++ENF V+ D ++ + D ILD+ + D+ G E Sbjct: 4 KILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVMMPDMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 LCRNIR-EQYRYPVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 122 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +IV L +N+ + + LT E+ ++ +L +K ++ E Sbjct: 123 YNTGAGPDEDVIVHSGLVINVRTHECTLNEKPLSLTPTEFSILHILCRKKGEVVSSEELF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ I V I LR+K+ ++ YI+TVWG GY + Sbjct: 183 HEIWNDEYFTKSNNTITVHIRHLREKMGDSFEDPKYIKTVWGCGYKIE 230 >gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W] gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W] gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum SCRI1043] gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163] gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Dickeya dadantii 3937] gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium atrosepticum SCRI1043] gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Dickeya dadantii 3937] Length = 239 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] Length = 240 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I L+ + +D + + D I+LD + + G E Sbjct: 11 ILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQVSGVEF 70 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ + K+ GL++GADDYI+KPF+ ELVAR++A+ R + Sbjct: 71 ARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLRRST 130 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I L ++ ++ + G + + E+++++ T+ L+ ++ Sbjct: 131 PAGIDEPIEINGLKLDPNSHRITAHGDELSMGPTEFRLLQFFMSHAERAYTRGQLLDQVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + + +DV I +LRK L + I+TV G GY Sbjct: 191 GGNVYVDERTVDVHIRRLRKGLGDEFKS--LIQTVRGTGYRF 230 >gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ I ++LD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKIVRKDSRI-PILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q G L +N D+ V G ++LT E+ + LL+ N + + Sbjct: 120 ENSVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229 >gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ L ++ L++ F + GE + + D ++LD+ L D+ G EV Sbjct: 4 VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 R ++ PV +L+ D+V G + GADDY++KPF+ ELV R++A++RR+ Sbjct: 64 CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRAG 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + G + V++++ V V G + LT E++++ L R +++ L + Sbjct: 124 ARPSERPPESVGPIRVDVESHRVYVDGAEVVLTPLEFKLLTTLMSRLGRVQSRDQLLEDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E E + +D + +LR+KL G++ +ETV G GY L + ++ Sbjct: 184 WEMSAEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPSE 228 >gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82] gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82] gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 254 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I P+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEENPARARYIQTVWGVGYVFVPDGAE 254 >gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 220 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D +LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 EVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220 >gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 132/229 (57%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ A+ IEL+L+ EN+ V + G+ ++L + D ++LDL L D G++ Sbjct: 3 KILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + K + PV +LS + + DKV GL+ GA+DY++KPF+ EL+ARI+ I+RR+ Sbjct: 63 L-CKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + I+ +L+ +L+++ V G + LT KE++++E L R + T++ Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + + + +D+ I +LRKKL + A Y+ T++G GY L Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230 >gi|159037188|ref|YP_001536441.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916023|gb|ABV97450.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 218 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA +++ L++E F V V G G+E + ++DA+ILD+ L + G+ Sbjct: 1 MRLLVVEDEARLAAALQRGLQAEGFVVDVASTGPAGLEAARHGDYDAMILDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVVRQLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ + V G + LTG+EY +++ L R +T ++K L+H++D Sbjct: 121 PERPAVLAVGDLRLDPARRRVTRDGAEVALTGREYALLDYLMRRPDTVVSKVELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++V++ LR+KL +ETV G GY L Sbjct: 181 ASVETAPNAVEVYVGYLRRKLGRD-----RLETVRGAGYRLV 217 >gi|154246784|ref|YP_001417742.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160869|gb|ABS68085.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 232 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + + G ++ K D ILD+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++A++R Sbjct: 64 LRRLR-QKTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGAK 122 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ G+L ++ + T +G + LT E+ +++ L+ R ++ Sbjct: 123 DGAAPRETDSAKVLERGNLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRNA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK + IET++G GY +E Sbjct: 183 LMDAAYDDQVYVDDRTIDSHIKRLRKKFKSVDDSFEMIETLYGVGYRFKE 232 >gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 226 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL ++ L N+ + + GE+G+ + Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I P+ IL+ + +DKV GL +GADDY++KPF+ EELVAR++A++RR+ Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G S+N + ++ + L+G EY++ E L +K + + H+YD Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+VFI +LRKKL G IET+ G+GY L+ Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPN-GQYGLIETLRGQGYRLKP 222 >gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933] gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai] gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. MG1655] gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073] gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T] gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301] gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046] gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227] gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197] gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. W3110] gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89] gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536] gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401] gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1] gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638] gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A] gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS] gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4113] gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4401] gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4501] gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4486] gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4196] gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4076] gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC869] gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC508] gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739] gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. DH10B] gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5] gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94] gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638] gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99] gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A] gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11] gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22] gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019] gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171] gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012] gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1] gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str. EC4024] gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str. EC4024] gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342] gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4206] gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4045] gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4042] gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4115] gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11] gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str. E2348/69] gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. TW14588] gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469] gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1] gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88] gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a] gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989] gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39] gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026] gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972] gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA] gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli BW2952] gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str. TW14359] gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9] gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B] gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96] gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O103:H2 str. 12009] gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O26:H11 str. 11368] gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O111:H- str. 11128] gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str. FRIK966] gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168] gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220] gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Klebsiella sp. 1_1_55] gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str. CB9615] gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103] gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430] gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412] gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354] gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302] gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661] gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1] gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7] gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1] gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1] gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1] gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1] gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1] gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1] gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1] gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1] gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1] gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1] gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1] gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1] gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1] gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1] gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1] gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101] gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736] gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617] gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7] gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75] gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70] gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3] gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736] gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605] gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718] gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206] gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143] gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271] gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591] gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299] gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9] gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis [Escherichia coli O157:H7 str. EDL933] gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073] gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli] gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi] gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12 substr. MG1655] gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. MG1655] gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri] gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai] gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhi] gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T] gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301] gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046] gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF [Shigella dysenteriae Sd197] gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227] gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K12 substr. W3110] gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89] gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536] gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401] gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1] gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS] gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A] gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli str. K-12 substr. DH10B] gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5] gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC 3083-94] gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4196] gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4113] gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis Et1/99] gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638] gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4076] gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4401] gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4486] gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4501] gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC869] gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC508] gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A] gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11] gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22] gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019] gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171] gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012] gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1] gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342] gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4206] gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4045] gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4042] gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. EC4115] gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli] gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli] gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli] gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli] gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli] gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11] gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O127:H6 str. E2348/69] gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7 str. TW14588] gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli 55989] gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia fergusonii ATCC 35469] gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli IAI1] gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli S88] gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli IAI39] gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli ED1a] gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli UMN026] gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82] gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96] gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA] gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972] gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli BW2952] gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli O157:H7 str. TW14359] gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O26:H11 str. 11368] gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O103:H2 str. 12009] gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory system with EnvZ [Escherichia coli O111:H- str. 11128] gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15] gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017] gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168] gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM 12163] gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042] gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Klebsiella sp. 1_1_55] gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str. CB9615] gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC 29220] gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103] gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412] gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354] gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430] gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034] gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302] gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661] gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1] gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1] gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1] gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1] gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1] gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1] gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1] gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1] gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1] gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1] gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1] gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1] gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1] gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7] gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1] gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1] gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1] gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101] gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU 83972] gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146] gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7] gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617] gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70] gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617] gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC BAA-2158] gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75] gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG 857C] gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str. 2457T] gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Escherichia coli W] gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1] gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1] gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3] gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1] gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3] gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431] gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae CDC 74-1112] gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC 796-83] gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. EC1212] gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli WV_060327] gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli EC4100B] gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101] gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str. 493-89] gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H 2687] gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA 5905] gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str. LSU-61] gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14] gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010] gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G] gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68] gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180] gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357] gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1] gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2] gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3] gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227] gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. 1044] gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli O157:H7 str. 1125] gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v] gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355] gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3] gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli AA86] gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736] gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605] gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718] gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206] gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143] gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271] gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591] gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299] gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82] gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae 155-74] gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74] gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9] gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88] gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671] gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70] gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71] gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71] gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6] gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272] gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218] gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304] gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227] Length = 239 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|297564109|ref|YP_003683082.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848558|gb|ADH70576.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+A+ S+E L+ E + V G + D ++LD+ + + G V Sbjct: 7 VLVADDDRAIRDSLERALQLEGYRVRTVPDGVQALAAVHADPVDLLVLDVMMPGVDGLGV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TP+ +L+ D+V GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 67 ARVLRAERDRTPILMLTARVETPDRVAGLDAGADDYLAKPFELEELLARLRALLRRAAPF 126 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G L V + ++ V + L+ E+ ++ELL L + Sbjct: 127 PEDASEQGPLRVGELSLDPASRRVWRGDREVELSKTEFDLLELLVRNAGIVLDHSTIYDR 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ PE K + V+I LR+KL + GG I+TV G GY LR Sbjct: 187 IWGYDFGPESKNLAVYISYLRRKLED--GGPPLIQTVRGVGYTLRPQG 232 >gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L++DD++L + +++ + GE+G+ L + D ++LD+ + + GF+V Sbjct: 1 MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMPGMNGFDVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121 R +R P+ LS I DK G ++G DDY+ KPF+ +EL+ RI A +RR + Sbjct: 61 RRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKDDL 120 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + TGDL V + + G ++ LT KE++++ LL+ T++ Sbjct: 121 AFAKAVNREGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQIF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++ E + I VF+ K+R+K+ Y+ TVW GY E Sbjct: 181 AHIWGEDSEVDESSITVFMRKIREKIEENPSQPKYLLTVWRVGYKFAE 228 >gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 224 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L I L+ + F V GE + + A +LDLGL + G Sbjct: 1 MRILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR++R + P+ +L+ ++ D+VRGL GADDY+ KP + EEL AR+RA+VRR+ Sbjct: 61 DVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + D+ ++ ++ V G + L+ +E+ ++ +L L L++E HLY Sbjct: 121 GRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQIEQHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V + +LR KL + I TV G GYVL Sbjct: 181 WGQEVESNAVEVHVHRLRSKLGSD-----VIRTVRGIGYVL 216 >gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] Length = 231 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPG 59 RIL+ ED+ + + + L+ + V GED ++ +FD +LD+ + I G Sbjct: 3 RILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV + LR + + +L+ + DKVRGL GADDY++KPF+ ELVAR+ AI RR Sbjct: 63 FEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHRRV 122 Query: 120 RGHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A G +N ++ + G + LT EYQ++EL +N L + Sbjct: 123 NMIANQPQQVKSIVSGPFELNPKSRILTKNGVPVDLTQVEYQIMELFMKNQNVALDRTHI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ +VKI+DV I +LR K+ + YI T+WG GY Sbjct: 183 LNEIWGDNYYGDVKIVDVNIRRLRMKVEDEPSSPKYILTIWGFGYKW 229 >gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 138/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ L+ DL V+L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 235 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE F+V V G+ + D ++LD+ + + G EV Sbjct: 5 IALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDIKMPIMDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LR LR K PV L+ D+ GL SGADDYI+KPF+ L+ARIRA++RR+ Sbjct: 65 LRRLR-EKSMVPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRRTEAR 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +IV G L ++ D V G I LT E+ ++E L+ R +++ Sbjct: 124 FQEKSEETPQNSHIIVRGRLVMDPDRHQVSWDGEDISLTVTEFLILEALAQRPGFVKSRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ Y + + ID I +LR+K IET++G GY E Sbjct: 184 QLMDTAYQDDVYVDDRTIDSHIKRLRRKFRQVDNQFKSIETLYGIGYRFAEE 235 >gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e] gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL R2-561] gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e] Length = 225 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F+V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 235 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + +I + L+ E + GE+ ++L K E I++D+ + + G Sbjct: 5 RVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKMDGIV 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +L+ S DK+ GL GADDYI+KPFN ELVAR+++ +RR Sbjct: 65 TTSLIR-EFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLM 123 Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I L +NL K V + LT E++++ LL K + Sbjct: 124 LGAKSSNQQTTDEDTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSI 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + V I K+R+K+ Y++ VWG GY + Sbjct: 184 NDIYERVWDEPGYNAENTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234 >gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DDK + +++ L E + V ++ GE+ ++ + +F+ I++D+ + + GFE Sbjct: 4 KMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ L+ S +DK++G SG DDYI+KPF+ EL R+ AI++R Sbjct: 64 AIKRIR-RLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L T+ + + I LT KE+ ++ LL+ K Sbjct: 123 SVIEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I LR+KLS+ YI+TVWG GY + + A Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230 >gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes DSM 20306] gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes DSM 20306] Length = 236 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + LK + FNV + G + + + + +A ILD+ + + GFE+ Sbjct: 11 VLVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVMMPGMDGFEL 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 L LR + PV L+ S++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 71 LAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGAG 130 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + DL++N D V G I L+ E+ ++ L K L+K L+++ Sbjct: 131 QDENSDATMSYADLTLNDDTHEVTKGGEIIDLSPTEFNLLRFLMQNKEVVLSKAKILDNV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++ +I LR+K+ G I TV G GYVLR Sbjct: 191 WHYDFGGDGNVVESYISYLRRKI--DTGDSPLIHTVRGVGYVLRTP 234 >gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ A+ + + L+ + VY G +GIE + + D ++LDL L I GF V Sbjct: 5 ILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLMLPKIDGFAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 LR TP+ +L+ +++G ADDYI KPF+ ++ RI A++RR+ Sbjct: 65 CEILRKE-SRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTEQG 123 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S+I +++++ + V V + LT +E+++++LL ++E L+ ++ Sbjct: 124 TEEEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + KI++ I +RKKL YIET+ G GY + + Sbjct: 184 GYEYYGDQKIVNTHIKNIRKKLGVD-----YIETIRGVGYKIEKE 223 >gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED++ + + +E+ L+ E ++V GE+ E Y A+ILDL L + G EV R Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 65 ALRVAKISTPVCIL-SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 +R K + I+ + S E K+ GL+ GADDY+ KPF+ EEL+AR+ A++RRS Sbjct: 69 WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQFC 128 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-DGR 182 Q + + G + V + G ++LT E+ ++ N L++E + ++ Sbjct: 129 QKISLNGLIIQ-PRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPHTD 187 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID I KLR+K+ + I+TV G GY Sbjct: 188 VDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRFV 227 >gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D++A+A + + L++EN++V+ G+D + + D ILD+ L D+ GF + Sbjct: 8 ILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVMLPDMDGFSI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K + PV +L+ DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 68 CQQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 126 Query: 123 AQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ + R+ LT E+ ++ +L + ++ E Sbjct: 127 NSAEPNQEEHLIAFSGLVLDKKTHECTLNEKRLSLTPTEFSILWVLCSNRGRVVSSEELF 186 Query: 176 NHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + V I LR+K+ ++A YI+TVWG GY + + Sbjct: 187 HEVWGDKYFTNSNNTVMVHIRHLREKMHDSAEHPKYIKTVWGVGYKIEK 235 >gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ + I L + FN++ GE+G+ + D IILD+ + + Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 G E+L LR + PV L+ EDK+ G + GADDY++KPF+ + LVA+++A + R Sbjct: 61 GLEMLEKLR-EVSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S+ LSVN + V+V + I L+ KEY+++ L ++ L+++ L++ Sbjct: 120 TREDLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +D I +LR+KL + + YI TV G GY Sbjct: 180 VWGIDYYGDIRTVDTNIKRLREKLLDKSA---YIVTVRGSGYKFE 221 >gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +++ ++ L+ E + V G++ +E + ++ D ++LD+ + + G++ Sbjct: 3 KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPKLSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + + +L+ I DKV GL+ GADDY++KPF+ E++AR++A+ RRSR Sbjct: 63 VCRRL-GDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +I L++NL +T+ +G + LT KE+ ++ LL+ ++E Sbjct: 122 PEAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREA 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L ++D + +D+ + +LRKKL I+TV+G GY Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLG---NQHEVIQTVYGIGYK 225 >gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH] gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH] Length = 221 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++ELL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str. 'morsitans'] gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1] gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str. 'morsitans'] gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1] Length = 239 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|29336923|sp|Q9CCJ2|MTRA_MYCLE RecName: Full=DNA-binding response regulator mtrA Length = 225 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08] gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07] gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08] gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K + I ++ + D G + + + K D +ILD+ + + GF Sbjct: 3 KILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPYLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R R + P+ IL+ EDK++G + GADDYI+KPF+ + L+A++ A++RR Sbjct: 63 VCRVSR-EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + + + ++ V V+ I LT KE++++ L N ++E LN ++ Sbjct: 122 GIPKNSLILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LRKKL ++I T+ GY Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220 >gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 227 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDDK +A + L+ G DG+ +D +I+D L ++ G Sbjct: 1 MRILVIEDDKEVAAHLLKGLREAGHVADSVADGRDGLFQAAGEAYDLLIVDRMLPNVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++R LR + + PV ILS + ++D+V+GL++G DDY+ KPF EL+ARI A+ RR+ Sbjct: 61 TIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRTA 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ + G++ ++L A+ V I L +E++++E L + +T+ M L ++ Sbjct: 121 GSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ ++DV I +LR+K+ ++ETV G GYVLR N Sbjct: 181 WDYHFDPQTNVVDVHISRLRRKMDEGFAQP-FLETVRGAGYVLRTNG 226 >gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 271 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L+ E +++ GE+ +E+ K E +I+D+ + + G Sbjct: 45 ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGIRA 104 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ ILS + DK+ GL GADDY+ KPFN ELVAR+++ +RR Sbjct: 105 TLKIREESSI-PIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 163 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ S+ G LS+N D K V V G + LT EY ++ LL + + Sbjct: 164 GNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 223 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + +N Sbjct: 224 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 271 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E + V G + + + + DA+ILD+ L D+ G Sbjct: 22 RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 82 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 141 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 T GDL ++ D+ V IHLT E++++ L L+K L+ + Sbjct: 142 AVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 202 WNYDFGGQANVVELYISYLRKKI--DAGRSPMIHTRRGAGYLIKP 244 >gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] Length = 227 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + ++ L+ + V + +G K + + I+LD L +I G + Sbjct: 4 KILVIDDEMHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNISGID 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ +R + TPV +L+ + DKV+GL+ GADDYI+KPF +EL+ARI +++RR Sbjct: 64 VLKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVLRRY 123 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++L V + +I LT KE+ +++LL K L++ L+ Sbjct: 124 NMTTNKVEDVLTVKDIRMDLIKHEVTKKDKKIDLTIKEFDLLKLLLQNKGKVLSRNFLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I LRKK+ N G+ YIET+ G GY + Sbjct: 184 KVWGYEYFGETRTVDVHIRYLRKKIEND--GEKYIETIRGIGYKI 226 >gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ++ + L+ + V + GE + L + D ++LDL L + G E Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE---LVARIRAIVRR 118 V R LR + PV +L+ + D+V GL+ GADDY+ KPF+ E VA I R Sbjct: 70 VCRRLR-ERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ ++ G L ++LDA+ + G + LTG+E+ ++ L ++ L + Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + V + +LR+K+ I TVWG GY Sbjct: 189 WGW-SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229 >gi|111023287|ref|YP_706259.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226365794|ref|YP_002783577.1| two-component response regulator MtrA [Rhodococcus opacus B4] gi|110822817|gb|ABG98101.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226244284|dbj|BAH54632.1| two-component response regulator MtrA [Rhodococcus opacus B4] Length = 225 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++L+ E F+ YV G + + D ++LDL L + G + Sbjct: 4 RILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTQALTAVRETRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ D+ +++ A V I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGEELISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221 >gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ +++ IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] Length = 236 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+ I L+ E ++ + + D +++D L G E Sbjct: 14 RILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGTSGVE 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R + PV +L+ + +DK+ GL +GADDY+SKPF+ EL+ARIRA++RR Sbjct: 74 FVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLRRI 133 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ G L++++D+ V + L EY++++ + ++ L+H++ Sbjct: 134 GSADGQLLEVGGLAMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDHVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +LRK L+ G ++TV G GY Sbjct: 194 GRSAFVEERTVDVHVLRLRKALAPY-GCDKLVQTVRGAGYRF 234 >gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + V ++D G +G +L ++D +ILD+ L G+ Sbjct: 3 MKLLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R + R + Sbjct: 63 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + I TV G GYVL E + Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDFPQ-RLIHTVRGMGYVLEERDE 228 >gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcus oceani ATCC 19707] gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L E + GE + D I+LD L I G ++ Sbjct: 5 ILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGISGVDL 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + PV +L+ EDKVRGL GADDYI+KPF+ EL+ARI+A+ R + Sbjct: 65 ARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRRSA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +I L ++ + + V+G + + E++++ ++ +++++ Sbjct: 125 PLASGEVIEFDGLKLDPGSHRLSVRGTPLEMGPTEFRLLHFFLTHLERVYSRGQLIDYVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G +I+TV G GY Sbjct: 185 GDNVYVEERTVDVHIRRLRKSLEP-SGHDGFIQTVRGVGYRF 225 >gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] Length = 234 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 118/235 (50%), Gaps = 13/235 (5%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ I+++EDDK + +E+ L+S+ + V+ + G++G+ + + + D I+D+ + + Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPVMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + LR K PV +LS S DKV GL GADDY++KPF EL+AR+ + +RR Sbjct: 61 GITMTMRLR-EKYEFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 119 Query: 119 SRGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + + G L VN D V V G ++ +T E++++ LL Sbjct: 120 YNRFQEALNKKEEKERSYMIGGLEVNEDRVEVLVDGRQVKMTPIEFKILLLLIKHPGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +++ + I V I +R+K+ Y++ VWG GY + + Sbjct: 180 SAEEIYERVWN-EKAVNTETIMVHIRNIREKIEINPKEPKYVKVVWGIGYKMEKQ 233 >gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M++L+++DDK + + + +E ++V G++ ++ IILD+ + G Sbjct: 1 MKLLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V++ LR ++ P+ +LS S+ DK+ GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 LTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRRS 120 Query: 120 RGHAQ---SLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I G L ++ ++ V + G I LT E+ ++ LL+ N + + Sbjct: 121 GASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEFGILYLLASHPNEVFSADEIF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ K + V + LR K+ A GG I TVWG GY + E Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIETATGGDKVISTVWGVGYKISE 228 >gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD + + + L E + V + + + + L + D ++D+ + + GF Sbjct: 1 MKILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGNLPDLAVVDVMMPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L PV +L+ +EDK RG +G+DDY+ KPF +EL+ RI AI+RR Sbjct: 61 TLTEYL-TQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRFD 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G L ++ + V + + + L KE++++ LL+ R + T+ + ++ Sbjct: 120 KKNQVTIQVGKLVIDRRSFEVVIGENTLILPLKEFELLALLASRPHQVFTRSYIMEQVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + ++ + ++R++L+ I TV G GY L E Sbjct: 180 YDYDGDEQTLNTHVKRIRERLNRYDTAVE-ITTVRGVGYKLEE 221 >gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC 35236] gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC 35236] Length = 239 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGLEAVATVRHTPPAIILLDLMLPGSDGITI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQA 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 REQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL + G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDGDKPFIRAVYGMGYRWEAE 234 >gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602] gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 239 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 230 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + ++ L + + V V G++ ++ D I+LDLGL D+ G + Sbjct: 5 RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGLPDMDGKD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V+R LR TP+ +LS +K+ GADDY++KPF EL AR+R +R Sbjct: 65 VIRELRG-WSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAAQ 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q+ + +G L V++ A TV + G + LT KE+ ++ +L LT L ++ Sbjct: 124 QASEQTHLKSGALEVDVLAHTVTLNGAAVKLTPKEFDLLAILVRNAGRLLTHRQLLAAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + VF+ +LR+KL + +I T G GY L+ + Sbjct: 184 GAAHTEDLQYLRVFVGQLRQKLKASPDAPEFIVTEPGIGYRLQIDV 229 >gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + +++ G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++++++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R K N+I TVWG GY +N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227 >gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2] gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2] Length = 244 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 11 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 71 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 130 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 131 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 191 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 241 >gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032] gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus ATCC 35316] gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis z3032] gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus ATCC 35316] gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 239 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 232 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHP-MIHTVRGAGYVIRADEP 229 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ L + L+ E F VY + G++ I+ + D ++LD+ + ++ GF Sbjct: 7 ILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDEMDGFTA 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R A P+ +L+ +DKV GLQ GADDYI KPF+ ELVARI +RR++G Sbjct: 67 CKEIR-AFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQGI 125 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q +L + + V V G I LT KEY ++ L + T+E + L+ Sbjct: 126 QQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRLW 185 Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ +D I LR KL A +I+TVWG GY ++ Sbjct: 186 GMDTQQGTLRTVDTHIKTLRLKLKPAD---RFIKTVWGVGYKFEVDS 229 >gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D++++ H + L L+ E++ V GE+ ++L FD IILDL L D GF Sbjct: 1 MHILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR ++ P+ +L+ + DK+ GLQ GADDY++KPFN ELV R++ +++R Sbjct: 61 DLIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120 Query: 121 GHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+++ +T+ + G + LT +EY ++ L +E L + Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D+ + +LRKKL ++T++G GY + Sbjct: 181 WGFDFSGQTRAVDIMVQRLRKKLGPQG---ERLKTIYGAGYKWVD 222 >gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 227 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDDK + + L L+ + + V GE GIEL + +D ++LDL L G Sbjct: 5 IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGIELFERNYYDVVLLDLMLPKKSGK 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + R +TP+ +++ SI DKV L GA+DYI KPF EEL+ARIR R Sbjct: 65 ELCQEFR-KLNNTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 D+ ++L AK V + I+LT E+ ++E K + ++E + ++ Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E KI+DV+I LRKK+ + YI T+ G GY+ + Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDLDS---KYIHTIRGFGYMFQ 223 >gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 276 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L++ED++ LA ++ L+ + V V G G++L + FDA++LD+ L + GF Sbjct: 1 MHVLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 E+ R LR P+ IL+ ++ D+VRGL SGADDY+ KPF EL AR+RA R Sbjct: 61 EICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRALGRRAP 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ G + + TV V G + L +E ++ELL +++ L+ ++ Sbjct: 121 RPPDPPVVEVGPVRFHPATGTVTVAGRPVELRPRERALLELLLRNPGRLFSRDEILDRVW 180 Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E P ++DV +C+LR+KL A+ IE+V G GY L + Sbjct: 181 GFDREPPASNVVDVHVCQLRRKLGPAS---RLIESVRGYGYRLVAPGR 225 >gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + ++V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++++++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R K N+I TVWG GY N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227 >gi|116333923|ref|YP_795450.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099270|gb|ABJ64419.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 262 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/245 (27%), Positives = 125/245 (51%), Gaps = 19/245 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+ +++ + + K E ++ G + +E+ +D + LDL L + Sbjct: 19 MKLLMIEDNHSVSQMMSMFFKKEQWDAEFAYDGNEAVEMFSANPNIWDMVTLDLNLPGMD 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 79 GMQVSAEIRKLSPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 138 Query: 119 S--------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163 + +VT + +N + + GH+I LT KE+ +++ L+ Sbjct: 139 AELGPTAKPTEAEPLNETEAFDVVTENFKLNTKTREAYLNGHQIQDLTPKEFDLLKTLAQ 198 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++E L ++D + + +D I KLR+K+ G I+TVWG GY + Sbjct: 199 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 256 Query: 224 NAKDE 228 + D+ Sbjct: 257 SGADQ 261 >gi|41407100|ref|NP_959936.1| hypothetical protein MAP1002c [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774011|ref|ZP_05215527.1| hypothetical protein MaviaA2_04954 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395451|gb|AAS03319.1| hypothetical protein MAP_1002c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 257 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E + V + G + + D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RR+ Sbjct: 92 RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRAS 151 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 T GDL V+ ++ V + L+ E++++ L L++ L+ Sbjct: 152 QQPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDR 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ +G + I TV G GY+LR Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRP 255 >gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976] gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976] Length = 221 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + ++L L +NF V G+ G + ++DA++LDL L + G Sbjct: 1 MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFDALFSTQYDAVVLDLSLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ +++D++ G SGADDY+ KPF E+V R++A+VRR Sbjct: 61 DILKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S IV G L ++ + + + + I LT KE+Q+++L K+ LT+ LY Sbjct: 121 QQSSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++V+I LRKKL + +I+TV G GY L Sbjct: 181 WDNDVGSNTLEVYIHNLRKKLGKS-----WIKTVHGVGYRL 216 >gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] Length = 231 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 129/227 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ AL + I L+ N++V + GE+ +E + Y++D I+LDL L I G Sbjct: 1 MKLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + ILS + IED ++GL GA+DY+ KPF+ EL ARIR+++RRS Sbjct: 61 EVLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GD+ VN K + + LT KEY ++E L KN ++ E + H++D Sbjct: 121 IQNDVVLTLGDMKVNTAQKFAAIYDIKFDLTKKEYSILEYLMFNKNKVISPEQLIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I L+KK+ + +I+ + G+GY++ E+ D Sbjct: 181 SEVDSFSNSLKYHIYSLKKKIRAVSANDEFIKNIRGQGYIISESKVD 227 >gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 227 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL+ I ++LK+E F+ G+ ++ + D ++LDL L G Sbjct: 4 RVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKDGTV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D V GL++GADDY+SKPF +ELVARIR +RR Sbjct: 64 VCREIRRESGV-PIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ V G I LT E+ ++ L+ + L++E+ L ++ Sbjct: 123 PEPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGYK 221 >gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] Length = 234 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE + Y I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRAKSNV-PIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +++NL +V V G + + KE +++ L+ N T+E Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + + + TVWG GY Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSDWS--LSTVWGIGYKFE 232 >gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + ML ++V G + + + YEF ++LDL L + G E+ Sbjct: 7 ILIVEDDMDINNLLSKMLSKRGYHVRQAYSGTEALMCLEHYEFQLVLLDLMLPGMVGEEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ ++S + + K+ L GADD+I KPF+ E++AR+ A +RR Sbjct: 67 ICQIR-KLKNMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMVF 125 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L+ N D V ++G I +T KE+ ++ELL TK Sbjct: 126 SNPRDKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFEQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + ++V I LR KL+ A YI TVWG G+ + E Sbjct: 186 VWNDEFLGDDNTVNVHISNLRSKLAKADPATEYIHTVWGIGFKMNE 231 >gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + + +E ++V G++ + D IILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MQVVKKLRKESQI-PIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 RGHAQSLIV----TGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N D+ V + G I LT E+ ++ LLS N + + Sbjct: 120 NIKPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKI 226 >gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 238 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 110/232 (47%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + ++ + EN+ V GE+ I ++ I+LD+ L GFE Sbjct: 5 RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + +L+ + KV GL GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRIDL 124 Query: 122 HAQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q+ D+ ++ G + L+ +E+Q+++ R+ + + Sbjct: 125 QTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVLR 184 Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E L L+ + P + ID I LR+KL + I ++ G GY Sbjct: 185 EDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKF 236 >gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293] gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A + L++E F V G + + D +LD+ L DI GF+ Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV +L+ DK+ GL GADDY++KPFN E+VAR++ +RR + Sbjct: 64 LLQNIR-KTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 HAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + +++ + G + LT E++++ L + + + E Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+KL+ I+TVWG GY++ + Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] Length = 226 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 134/227 (59%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD+ +A+ + LK +F V G++G+ + ++D +I+D L + G Sbjct: 1 MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R PV ILS + ++D+V GL+ G DDY++KPF+ EL+ARI ++VRR+R Sbjct: 61 SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ DL ++L A+TV+ GH I + +E++++E L +T+ M L + Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ ++T+ G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFETP-LLQTIRGAGYMLRETA 226 >gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family [Cupriavidus metallidurans CH34] Length = 223 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ LA + L + V G D L +DA+ILDLGL + G Sbjct: 1 MRILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV IL+ S +KV G+ +GADDY++KPF EEL+ARIRA++RRS Sbjct: 61 TVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH ++V G +++ V V G I LT EY++++ L + ++K H+Y Sbjct: 121 GHTSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LR+KL IETV G GY LR Sbjct: 181 QDHDRDSNTIEVFVGRLRRKLGVD-----VIETVRGLGYRLRPPE 220 >gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 224 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L +I LK + V G + +E+ + +D IILDL L + G Sbjct: 1 MKILIVEDEQILNDTINKSLKKSGYEVESAFDGINAMEMIEIESYDLIILDLNLPHMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR T V ILS S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ Sbjct: 61 EILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I + + + V V G + LT KE ++E L L + +++E + H++D Sbjct: 121 IQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL + IE G GY+LR+ Sbjct: 181 SSVDLLSNSIRVHISALRKKL-KNKLNYDPIENRIGVGYLLRK 222 >gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 229 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ ALA ++ L+ E ++V V GE+G+ + D ++LD L + G EV Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVSGIEV 64 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + PV +L+ D+VRGL +GADDY++KPF+ EL+ARIRA++RR R Sbjct: 65 CRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRIR 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + GD+ ++ A V G +HL E+++++ ++E L+ ++ Sbjct: 125 PGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +LRK L N N I TV GY L Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEESANPIRTVRSAGYSL 225 >gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900] Length = 254 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254 >gi|187935582|ref|YP_001887366.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187723735|gb|ACD24956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 242 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 25/242 (10%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ +++ L ENF V GE ++L + ++ ++LD+ L DI GFE Sbjct: 5 RILVVEDEFSINDTLKFALSKENFEVKGAYNGESALKLLEEFQPHLVLLDIMLPDISGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 + + V +L+ + DK+ G++ GADDYI+KPF E++ARI AI R Sbjct: 65 LC---KSISQKFYVIMLTARDDVIDKILGMEIGADDYITKPFEIREVIARINAIFRTAGK 121 Query: 118 -----------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 + + V ++S+N + +TV G I L KE++++ Sbjct: 122 NIWNNENNNMIMNVLECNTNDDNKGNTVEDEISINFNTRTVIKDGEEIILKRKEFELLSY 181 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L K T++ LN ++ + + +DV I +LR L IETV+G GYV Sbjct: 182 LYKNKGIVFTRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGEDKENS-VIETVFGVGYV 240 Query: 221 LR 222 +R Sbjct: 241 IR 242 >gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 238 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + ++L L +NF V G+ G E E+DA++LDL L + G Sbjct: 18 MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R + PV IL+ ++++++ G SGADDY+ KPF E+V R++A++RR Sbjct: 78 AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 137 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I GDL+++ V + I+LT KE+Q++ L + K+ LT+ LY Sbjct: 138 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++V+I LRKKL K +I+TV G GY + Sbjct: 198 WDNDVSSNAMEVYIHNLRKKLG-----KEWIKTVHGIGYKI 233 >gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 225 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + + N+ G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDTTTIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 ++L ALR TPV ILS + ++++V+GL++G DDY++KPF EL+ R ++ R Sbjct: 61 KLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRGL 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G+L + L + V + G+ + L KE+Q+++ L N +++ + ++ Sbjct: 121 AKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LRE Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRE 223 >gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 219 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 7/221 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED++ LA S+ L +E + V V G +G+ +D +ILD+ L + G+ V Sbjct: 1 MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIMLPGLNGYRVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRSRG 121 ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARI+A R + Sbjct: 61 AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGNGA 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ G+L ++ A V + G + LT KE+ ++E L+LR ++K L H++D Sbjct: 121 GASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVWDF 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++V++ LR+KL I TV G GY L Sbjct: 181 AYDGDPNIVEVYVSTLRRKL-----DAGLIRTVRGAGYRLE 216 >gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638] gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 220 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + + L + E+ +ILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +IED++ GL SGADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ + +V GDL++NL + V H + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D+P ++V I LR+KL I+TV G GY L Sbjct: 181 WQDDPGSNTLEVHIHNLRRKLGKD-----RIKTVRGVGYRLE 217 >gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica] Length = 239 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|291302704|ref|YP_003513982.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571924|gb|ADD44889.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + ++ E + Y G ++L + + DA+ILD+ L D+ G Sbjct: 17 IRVLVVDDEAPLAELLSMAVRYEGWQAYTAGDGTAALKLAREHRPDAVILDIMLPDMDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL L TPV L+ ++ED+VRGL +G DDY++KPF+ EE++AR+R ++RRS Sbjct: 77 SVLDRLHADAPETPVLFLTAKDAVEDRVRGLTAGGDDYVTKPFSLEEVLARLRNLLRRSG 136 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL++N D V G I LT E++++ L L+K L+ Sbjct: 137 AARANRASALTVGDLTLNEDTHEVSRAGEDIPLTATEFELLRYLMRNPRRVLSKAQILDR 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LR+K+ AG I T G GY+L+ Sbjct: 197 VWNYDFGGQANVVELYISYLRRKI--DAGRPPMIHTRRGAGYILKP 240 >gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 233 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + LK E ++ V GE+ + + K D ++LDL L I GFE Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAI 115 V R +R + P+ +L+ D V GL+ GA+DYISKPF+ ELVARI R Sbjct: 65 VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + Q+ ++ G LS+++ V V + + LT E+Q++ L +K T+ + Sbjct: 125 TRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + +DV I LRKKL A ++IETV G GY RE A Sbjct: 185 DAVHGENYAVTERSVDVTIAGLRKKLGPCA---DFIETVRGVGYRFREEA 231 >gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] Length = 223 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD + + L+ + + + G + I L FD I+LD+ L I GF Sbjct: 3 HILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIMLPKIDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ ++ E+++RGL DDYI+KPF+ LV +I A++RRS Sbjct: 63 VCELIRKQ-SQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLRRSSM 121 Query: 122 HAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T ++D+ T V G LT +E++++ L L + LT++ L+ L Sbjct: 122 IPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREFEVLRELLLNQGRVLTRQNLLDKL 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++D I LRKKL +I+T+ G GY + + Sbjct: 182 WKYDFYGDERVVDTHIKNLRKKLGID-----FIQTIRGVGYKIDKE 222 >gi|187928922|ref|YP_001899409.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|309783197|ref|ZP_07677913.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] gi|187725812|gb|ACD26977.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|308918075|gb|EFP63756.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] Length = 228 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L ++D +ILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGLDGRHLAMTGDYDLLILDVMLPDLEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR +++ PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 QILHALRSTELAVPVLFLTARDSVADRVKGLELGADDYMVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI LT KE+ ++ELL+ R L + + + ++ Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRITLTSKEFSLLELLARRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV I +LR K+ + I TV G GYVL E Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNF-EPKLIHTVRGMGYVLEGPEDGE 228 >gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++D+ L ++ LK E + V + + E D IILD+ L D G Sbjct: 4 RILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIMLPDGNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + P+ LS S DK+ L G DDY++KPF+ +E+V R+++ +RR+ Sbjct: 64 DFCAKIRG-HSTVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQLRRAG 122 Query: 121 GHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A+ G ++N D + + + LT KE ++ R+ +++ Sbjct: 123 TYAKQDTARSGESRILKAGPFTMNEDETEMYLHDQPLDLTAKEAGLLACFIRRQGQIISQ 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++ + V I +LR+K+ I+TV G GY L Sbjct: 183 ETLYETVWNESYFGAANTLMVHIRRLREKVEENPSSPVLIKTVKGLGYRL 232 >gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551] gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + + + V GE ++ K D IILD+ + + GF++ Sbjct: 5 ILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN-VDLIILDVMMPQMDGFDL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R +I P+ LS S DKV+G G DDYI+KPF +EL+AR+ A +RR + Sbjct: 64 CKVIR-EQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQRD 122 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S G+L++N V + G +I LT KE++++ELL++ +KE ++ Sbjct: 123 RVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I LR KL + +I+TVWG GY L + Sbjct: 183 GIDAMGDLNTIIVHINNLRAKL-TSGMSTYHIKTVWGVGYKLEK 225 >gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + +E + I++D L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTALDDTIDVQGLKLDPVSHRVTSNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A+G + I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-ASGHEKLIQTVRGAGYRF 225 >gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L SI +L E F V GEDG+ L +D I+LD+ L I GF Sbjct: 1 MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA+ R Sbjct: 60 EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYMLKEQ 223 >gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium HTCC2083] gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium HTCC2083] Length = 227 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A + L++E + V + G++G+ L + D I+LD L ++ G EV Sbjct: 6 ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R ++ + P+ +LS S DKVRGL++GADDY++KP++ +EL+AR++A R Sbjct: 66 CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRTR 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + D+ +N + V G + L EY+++ L + +E L+H++ Sbjct: 126 PAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDHVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L A GG + I T+ G GY Sbjct: 186 GRDAFVDTRTVDVHVGRLRKAL-TAEGGSDPIRTIRGTGYAF 226 >gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 230 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + + + + G G ++D +I+D L + G Sbjct: 4 MRILIIEDDREASDYLVKAFREQGHVADHAADGLSGYASASEGDYDVLIVDRMLPKMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRR 118 ++ +LR K+ TP ILS + ++D+V+GL++G DDY+ KP++ EL+AR+ A R Sbjct: 64 SLISSLREQKVETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALARRRV 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GDL ++ + V V G I L +E++++E L +T+ M L ++ Sbjct: 124 GPRGEETHYRVGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +IDV I +LR K+ + T+ G GY++RE Sbjct: 184 WDYHFDPQTNVIDVHISRLRAKIDKGRENP-LLHTIRGAGYMIRE 227 >gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] Length = 230 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + L D I+LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGIN 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ + PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRV 123 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I +LRK L A G ++TV G GY A Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AEGHDRLVQTVRGAGYRFSVQA 229 >gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 229 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229 >gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + +E L + V G + +EL + E D ++LD+ + ++ GF Sbjct: 10 KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGFA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R PV +L+ + + D++ GL+ GADDY+ KPF+ +EL ARI+ ++RR+ Sbjct: 70 VLERIRAQ-SEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQ 128 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 V GDLSV+ + + G RI LTG E+ ++ELL R + + Sbjct: 129 GQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRL 188 Query: 173 MFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + E + +++DV I +LR KL I T G GY+ + Sbjct: 189 DMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMFQ 240 >gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 221 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRVLVVEDDKDLNRQISDALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A +V G + LT E++++ L +++ + HLYD Sbjct: 121 GHASSELTCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKK+ IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGID-----MIETVRGMGYRMREPE 220 >gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 219 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + LK+ F + T G + L +FD IILD+GL DI GFE Sbjct: 3 RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR + TPV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R Sbjct: 63 VLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D+ ++L +T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 123 GPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL +ETV G GY L Sbjct: 183 LDFDPGSNVVEVYVSYLRNKLGR-----QRVETVRGMGYRL 218 >gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus ATCC 53653] gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + + L+ E + V G + I + DA++LD+ L D+ G Sbjct: 66 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGLT 125 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 126 VLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 185 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 186 AAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 245 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG I T G GY+++ Sbjct: 246 WSYDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLIKP 288 >gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 237 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 11/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + L F V D GE + L + D ++LD+ L + G+++ Sbjct: 12 ILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQI 71 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ +L+ S +D GL GADDYI+KPF+ + LV+R+++ +RRSR Sbjct: 72 CKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRRSR 131 Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + ++ V VQ + LT E+ ++ELL+ R +++ Sbjct: 132 ELDQDEDGGVLRLTEAGIVIDPRRHQVLVQDKPVSLTISEFSILELLARRPGWVFSRQQI 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + LRKKL A IETV G GY L+ Sbjct: 192 IDTVRGYDYAITPRAVDVQVFGLRKKLGQAGA---CIETVRGVGYRLK 236 >gi|254820268|ref|ZP_05225269.1| hypothetical protein MintA_10086 [Mycobacterium intracellulare ATCC 13950] Length = 257 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E + V + G + + + D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFERVNPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R + + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 RILERVRQSDVYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 T GDL V+ ++ V + L+ E++++ L L++ L+ Sbjct: 152 QPPTPTAETLIVGDLRVDTASREVTRGDTAVSLSSTEFELLRFLMRNPRRALSRTEILDR 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ +G + I TV G GY+LR Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRP 255 >gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 232 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMDQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 223 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+IED + + I L E+F D +G+ + + D I+LDL L + G Sbjct: 2 IKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKGM 61 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 + L+ +R K P+ I+S ++ +D + GL+ GADDY++KPF+ + L+A+I AI+RR Sbjct: 62 QFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILRR 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I ++++ + V V G I LT KEY++++LL T+ LN + Sbjct: 122 NPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNAV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + +D + LRKKL +I++V GY Sbjct: 182 WGYESDVYTRTVDTHVSSLRKKLGTRGS---FIKSVPKIGYR 220 >gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] Length = 227 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+IED+ A + L +E + V + GE G+ + D I+LD L + G E Sbjct: 5 HVLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHVSGIE 64 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R R + P+ +LS S DKVRGL++GADDY+ KP+ EL+AR+R +RR Sbjct: 65 ICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + GD+ ++ D V + L E++++ + L++E L+ + Sbjct: 125 RPSKVGQVLTFGDIELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK L+ G + + TV G GY L Sbjct: 185 WGRDIYVDTRTVDVHVGRLRKVLTQNGGD-DPLRTVRGAGYAL 226 >gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ3810] gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ3810] Length = 230 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I+TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL +++ + G + LT KEY ++ELL + L++ + Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV + +LR K+ + + I TV G GY L E+ Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227 >gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330] Length = 229 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDYI+KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + + +L F G + ++ D +I+D+ + ++ GFE Sbjct: 5 KIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + PV +L+ + KV+G GADDY++KPF +EL+AR++A++RR + Sbjct: 65 LCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYKI 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +I TG++ ++ ++ ++ + G R + KE+++I L+ T ++ + ++ Sbjct: 125 EASQVIQTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWGV 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR + G I TV G GY L Sbjct: 185 DFEGNERTLDVHVNRLRDRFPEETAGFK-ITTVRGLGYRLE 224 >gi|255655801|ref|ZP_05401210.1| two-component response regulator [Clostridium difficile QCD-23m63] Length = 232 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + +LD+ L DI G Sbjct: 4 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + +DK+ G SGADDYI KPF+ +EL+ R+ A++RR Sbjct: 64 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRVA 123 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + +S ++D + + G I LT E+ +++ L +L+++ L+ Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKEE 232 >gi|209885691|ref|YP_002289548.1| transcriptional activator protein CopR [Oligotropha carboxidovorans OM5] gi|209873887|gb|ACI93683.1| transcriptional activator protein CopR [Oligotropha carboxidovorans OM5] Length = 226 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L + +D +++D L G Sbjct: 1 MRLLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR +TP ILS + ++D+++GL++G DDY+ KP++ EL+AR+ RR Sbjct: 61 SVIGTLRETGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL ++ + V+ G I L +E++++E L +T+ M L +++ Sbjct: 121 GPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGQEVP-LLHTIRGAGYMIRD 223 >gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 249 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 121/242 (50%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ ++V + G G L + D ++LDL L + GF Sbjct: 3 RILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + P+ +L+ + +DKV G +GADDY++KPF EE++ R+RA++RRS Sbjct: 63 VCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRRS 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + I LT E++++ L R T++ Sbjct: 123 DRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ +++ I V + LR KL YI+TV+G GY L ++ E + Sbjct: 183 LKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGETTQ 242 Query: 235 TA 236 + Sbjct: 243 VS 244 >gi|148240222|ref|YP_001225609.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848761|emb|CAK24312.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 246 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 +RILL++D+ L +++ L+ E ++V V G G+ + D I+LD L D G Sbjct: 9 IRILLVDDEARLTDLLKMELEVEGYDVVVASDGASGLFHARETPGPDLIVLDWNLPDFSG 68 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ + +R + ++TP+ +L+G I D+V L +G DDY+ KPF+ EEL+AR+RA+ RR+ Sbjct: 69 IDICQRIRTSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128 Query: 120 RGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G+LS+N + V I L+ KEY+++ L + L + Sbjct: 129 ITFAAVNGDGPQPETLSVGNLSMNTITRDVYRGERMIQLSVKEYELLNFLMRGQGKVLER 188 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + ++DV+I LR+K+ + I TV G G++LRE A Sbjct: 189 AAIMRGVWGENFYGDDNLLDVYIRYLRQKVESK-DLPTLIHTVRGVGFILREEA 241 >gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 228 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +L++ED+ +L+ ++ L E++ V G +E+ + + D ++LD + + G Sbjct: 4 HVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR ++ + TP+ L+ I DKV GL +GADDYI+KPF EEL+AR+R I R+ Sbjct: 64 LTVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L V+L A T EV G ++LT +E+ ++ + +++ L+ ++ Sbjct: 124 SNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D ++ LR K+ + K+ IETV G GY L Sbjct: 184 GMDFDGQENTVDAYVRYLRAKI-DLPNHKSLIETVRGIGYRL 224 >gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 223 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L+ + V G + +EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGLPKLHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R TPV IL+ S+E +V+GL GADDY++KPF +EL AR+RA+ RR Sbjct: 61 EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G LS + + + I L+ +E ++E+L R ++K+ + L + Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE I+V+I +LRKK+ G I TV G GY L + Sbjct: 181 WGDEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEK 220 >gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD ++A IE L E + V V +G + D +LDL L D G+ Sbjct: 1 MKILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTLPDGSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + + PV L+ + V GL GADDY++KPF EL++RI++++RR Sbjct: 61 ELCKVAK-ENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRRHN 119 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ +N V + LT EY+++ + L++ L + Sbjct: 120 KTDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLEGI 179 Query: 179 YDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +D D + V+I +LR KL + G +I T+ G GY Sbjct: 180 WDIAGDFVNDNTVTVYIKRLRDKLEDDPGNPTFITTIRGIGYK 222 >gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 233 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + ++L L+ ENF+V T G + + L K ++D I+LDLGL DI G Sbjct: 4 KVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDINGEH 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R TP+ I++ S+ +KV + G DDYI KPF K EL+ARI+AI+RRS Sbjct: 64 ICKKIR-EMSETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNK 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++I+T +NL+ + G +I LT KE +++ L L ++ + H Sbjct: 123 IKSSNDNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKH 182 Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +DV I +R+K+ +I+T+ G GY Sbjct: 183 VWGDDSLYKWSRSLDVHIQHIRQKIELNPKKPKFIKTIPGIGYKF 227 >gi|145594141|ref|YP_001158438.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303478|gb|ABP54060.1| response regulator receiver [Salinispora tropica CNB-440] Length = 219 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L++E F V V G G++ + ++DA++LD+ L + G+ Sbjct: 1 MRLLVVEDEARLAAALHRGLQAEGFVVDVASTGPAGLDAARHGDYDAMVLDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVVRRLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ + V G + LT +EY +++ L R T ++K L+H++D Sbjct: 121 PERPAVLTVGDLRLDPARRRVTRDGAEVALTAREYALLDYLMRRPGTVVSKIELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++V++ LR+KL +ETV G GY L Sbjct: 181 ANIETAPNAVEVYVGYLRRKLGRD-----RLETVRGAGYRLV 217 >gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873] gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873] Length = 232 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DDK + +I++ LK+E VY G D + + + E I++D+ + + G + Sbjct: 6 VLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS S DKV GL GADDY++KPFN EL+AR+++ +RR Sbjct: 66 TFKIR-EKKDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124 Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G + +N AK V V G I T EY+++E L + + + Sbjct: 125 SNYKINKEELKVGGIILNKIAKRVTVDGEEIRFTPIEYKILEFLMESIGQVFSIKQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I ++R+K+ Y++ VWG GY ++E Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231 >gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv. albensis VL426] gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv. albensis VL426] Length = 240 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSSEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|170760124|ref|YP_001787315.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795352|ref|YP_002862904.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169407113|gb|ACA55524.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|229262869|gb|ACQ53902.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 233 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L+++D+K + +IE+ L+S EN N+ G D +++ + E IILD+ + Sbjct: 1 MRTYNVLVVDDEKEIRDAIEIYLRSIENTNIIKAADGLDALDVLENNEIHVIILDIMMPK 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G +R K + P+ +LS + DK+ GL GADDY++KPFN ELVAR+ + + Sbjct: 61 LDGIRTCMKIR-EKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQL 119 Query: 117 RRSRGHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR I L +N + V V G ++ LT EY ++ LL+ Sbjct: 120 RRYTNLGNFPKTADVDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +LRKK+ YI+ +WG GY + + Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233 >gi|153938445|ref|YP_001391244.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168180510|ref|ZP_02615174.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|152934341|gb|ABS39839.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|182668847|gb|EDT80825.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|295319280|gb|ADF99657.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L+++D+K + +IE+ L+S E+ N+ G D +++ + E IILD+ + Sbjct: 1 MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G +R + + P+ +LS + DK+ GL GADDYI+KPFN ELVAR+ + + Sbjct: 61 LDGIRTCMKIR-ERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQL 119 Query: 117 RRSRGHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR I L +N + V V G ++ LT EY ++ LL+ Sbjct: 120 RRYTNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +LRKK+ YI+ +WG GY + + Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233 >gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2] gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39] gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341] gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39] gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2] gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341] Length = 240 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I GD +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSSEETIIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ LA +EL L E F+V+V G +G+EL +D I+LD+ L + G E Sbjct: 4 RILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V R +R A STP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA R Sbjct: 64 VCRRIR-AAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ A+TV+ I LT +EY ++ N LT+++ L ++ Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++DV++ LR+KL YI+TV G GYV+R Sbjct: 183 FDTEVETNVVDVYVRYLRQKLDEHNKE-RYIQTVRGAGYVMRP 224 >gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis TX1467] Length = 229 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR P+ +L+ ++ DK++GL +GADDY+++PFN E++AR+++I+RRS Sbjct: 61 MEVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|317122193|ref|YP_004102196.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592173|gb|ADU51469.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 232 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + L L+ + F+V + ++LDL L D G + Sbjct: 5 RILVVDDEPGIREICRLYLERDGFSVREAASVAGARAALQRESPALVVLDLMLPDGNGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R L PV L+ + D+V GL+ GADDY++KPF+ ELVAR+RA++RR+RG Sbjct: 65 LCREL--VDQGVPVICLTARAEETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARG 122 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G +V+L A+ + V + LT KE+ ++ LL + T++ L + Sbjct: 123 PRAAAPVVVRFGRCAVDLAARRLLVDDREVPLTPKEFDLLALLVTHPHRVFTRQQLLEQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + +DV + +LR+K+ Y++TVW GY + Sbjct: 183 WDFAYAGDTRTVDVHVQRLRRKIEPDPQRPRYLKTVWSVGYRFDPEGE 230 >gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586] gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586] Length = 240 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I GD +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|134096719|ref|YP_001102380.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009616|ref|ZP_06567589.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909342|emb|CAL99454.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ +A IE L++ F V G+ ++ +FD ++LDLGL GF Sbjct: 3 KILIAEDEARIAAFIEKGLRANGFTTTVVGDGDTALDYVLTGDFDLVVLDLGLPGKDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR +++ PV IL+ S+ D V GL+ GADDY++KPF EEL+AR+R +R + Sbjct: 63 VLRALRAQRVTVPVIILTARDSVHDTVAGLEGGADDYMTKPFRFEELLARVRLRLRPTDR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+LS++L + +V + LT +E+ M+EL L++E L+H++ Sbjct: 123 APEVTVLRDGELSLDLRTRRAQVPEGTVDLTAREFSMLELFLRHSGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LR+K+ + I TV G GY L Sbjct: 183 YDFDPGSNVVDVYVRALRRKIGS-----TRIHTVRGMGYRL 218 >gi|15893581|ref|NP_346930.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023129|gb|AAK78270.1|AE007542_7 Response regulator (CheY domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507701|gb|ADZ19337.1| Response regulator (CheY domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 235 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++D++++ + +LK E F NV + G DG++ C+ + IILD+ L DI GF Sbjct: 8 KILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPDIDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R S P+ LS S DK+ GL GADDYI+KPF+ +E+ R++A ++R Sbjct: 68 EVFRQIR-NFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +++I T +++ + + L KE +++ L KN L+KE Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +N +++ I V I KLR+KL + YI TV G GY L+ Sbjct: 187 VNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLK 234 >gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus K5030] gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AN-5034] gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus Peru-466] gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus Peru-466] gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AN-5034] gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus K5030] Length = 230 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL +++ + G + LT KEY ++ELL + L++ + Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV + +LR K+ + + I TV G GY L E+ Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227 >gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC 29909] gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC 29909] Length = 239 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G++ + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYQTQWLTRGDEVVAAVRQSPPAIILLDLMLPGSDGITI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR R Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRPL 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q T L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 PQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL + G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWEAE 234 >gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3] gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 227 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ LK + + + + + G+DG+ L ++ I+LD L + G Sbjct: 1 MRILVIEDNLTTRQYLQKALKEQGYEIDLAENGQDGLFLALEGDYQLILLDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE---LVARIRAIVR 117 VL LR A TPV ILS + S+ ++V+GL+ G+DDY+ KPF E + + Sbjct: 61 TVLTTLRNAGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQRKG 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +++ DL + L ++ V + + L KE++++ L +++ + Sbjct: 121 SNSDKQTNVLQVADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D + +P+ +IDV + +LRKK+ G + +ETV G GY + E Sbjct: 181 VWDYQFDPQTNVIDVHMARLRKKVEFD-GLPSLLETVRGVGYRMVEQG 227 >gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 16/232 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + I +L +E ++V G + I+ ++++ +ILD+ + + G+E Sbjct: 8 VLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVMMPKLDGYET 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR PV +L+ S DKV GL++GADDY++KPF + EL+AR+ AI+RRS + Sbjct: 68 LDILRKQ-SGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAY 126 Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +++N +K V V + + LT KE++M+EL ++ Sbjct: 127 PNIGQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSR 186 Query: 172 EMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ + +D + LR KL +A+ I+TVWG GY L Sbjct: 187 EQLLEAIWGMDYLSASSRTVDTHVKTLRLKLRDASAH---IQTVWGIGYKLE 235 >gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 229 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +K+E + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ILS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 IEVVKEVRKDSQI-PILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L++N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 QDQVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227 >gi|55979989|ref|YP_143286.1| response regulator [Thermus thermophilus HB8] gi|55771402|dbj|BAD69843.1| response regulator [Thermus thermophilus HB8] Length = 223 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD + + L+ E F V G + +E D ++LD GL D+ G E Sbjct: 3 RVLLVEDDSQVGELVRRFLEREGFAVAWVRFGREALERVGEEGADVVVLDRGLPDMEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR PV +L+G + E +V GL GADDY+ KPF+ EL+ARI+A++RR+ Sbjct: 63 VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L V+L + ++G + L+ E ++ + + T+ L ++ Sbjct: 123 EGRRRF--GPLEVDLGGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGP 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++D ++ LRKKL + +IETV G GY Sbjct: 181 EFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGYRF 220 >gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis IP 32953] gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis YPIII] gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis PB1/+] gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia pseudotuberculosis IP 31758] gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] Length = 239 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 74 CREIR-RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L +N QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWEAE 234 >gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52] gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395] gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27] gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae] gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52] gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395] gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395] gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27] Length = 240 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVV 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 241 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 5/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK + + L + D E L + D ++D L G + Sbjct: 11 VLVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLPGKSGLAL 70 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR P+ +L+ D+V GL+ GADDYI KPF+ +ELVAR+ A++RR Sbjct: 71 TGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRCA 130 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + ++ + V G RI LT E++++ L +++ L++++ Sbjct: 131 PEFVKGTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D+ I +LR L + +ETV G GY L A+ Sbjct: 191 GDHVYIEDRTVDIHIRRLRVALG--PAAEQMVETVRGVGYKLIGRAE 235 >gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 117/229 (51%), Gaps = 7/229 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD +A L+ + V + G G++ +D +I+DL L + G Sbjct: 1 MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+++ +R P+ +LS S DK+RGL GADDY++KPF+ EL+ARIR+ ++R Sbjct: 61 FEIIKEVRKKLEI-PIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRY 119 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I L +N + V V G + T KEY+++ + N +KE Sbjct: 120 ERLTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + L+ ++ + V I K+RKK+ YIETVWG GY Sbjct: 180 FDLLWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFNP 228 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD + I+L L+ E + V G ++ + D ++LD+ L ++ GF Sbjct: 4 KVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMNGFT 63 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R + PV +L+ +ED+VRGL+SGADDYI KPF+ EEL+AR+ A++RR Sbjct: 64 VLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR-- 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I+ G++ +NL ++ V+V G + L+ E+ ++++L ++K+ L ++ Sbjct: 122 KGYSEKILYGNIEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V+I LRKKL +A I+TV G GYV +E Sbjct: 182 TEEWGNPNVVEVYINYLRKKLGSAG---KIIKTVRGVGYVAKE 221 >gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568] gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC 43380] gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii ATCC 33641] gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC 29909] gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC 43969] gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582] gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC 43380] gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC 43969] gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii ATCC 33641] gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC 29909] gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582] gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia enterocolitica subsp. palearctica Y11] gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica W22703] Length = 239 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501] gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501] Length = 233 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++ +A IE+ LK++ + V LG++ ++ + FD +LD+ L DI GF+ Sbjct: 4 KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVMLPDIDGFK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R PV +L+ DK+ GL GADDYI+KPFN E+VARI+ +RR + Sbjct: 64 IVQKIR-ENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122 Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + L +N T + G I LT E+ ++ L RK + Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLVERKGEVVPA 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ + + I +LR+KL +I+T+WG GY + Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTIWGVGYKVE 233 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK ++ I L E + V V + G++G+ L E D IILD+ + D+ G E Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +++GM SI D+V GL++GADDY+ KPF EELVAR++A++RR Sbjct: 64 VCKRLRKD-AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL V+L + I + E+ ++ LT+E+ ++ ++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++V++ LR KL A I TV G GYVLRE Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLE-AQNEPRLIHTVRGAGYVLRE 225 >gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium] Length = 220 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD + +++ L + V G + + +ILD+ L + G Sbjct: 3 IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R TP+ +++ +S E+++R + ADDY++KPF + L+ R+ A++RR Sbjct: 63 ELLREFRAK-NDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR-S 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G L++ + TV G + LT KE++++ LL K TLT E+ L+ ++ Sbjct: 121 GALAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + I LR KL I+T+ G GY L E+ Sbjct: 181 YDFEGDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219 >gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + + + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGSEVVGAVRQAPPSIILLDLMLPGTDGISI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + T L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 133 REQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGKKPFIRAVYGMGYRWEAE 234 >gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] Length = 228 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ + +ILD+ + + G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ++S +S DK++GL +GADDY+ KPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSEI-PILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ +L+ N + + Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227 >gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 224 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILVVEDDQTLNRQLVEALNGAGYVVDKAMDGEEGHFLGDTEPYDAVVLDVGLPLMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLERWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G L ++ A V + G + LT EY++++ L ++ +++ + HLYD Sbjct: 121 GHASSEIHCGPLRLDTRAARVTLDGTALKLTSHEYRLLDYLMHHQDQIVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKKL GG IETV G+GY + + Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL----GGAELIETVRGQGYRMHD 219 >gi|227485677|ref|ZP_03915993.1| two component response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236349|gb|EEI86364.1| two component response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 226 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L SI L + G+D I++ +D IILD+ L GF Sbjct: 1 MKVLIVEDELDLLDSIAEGLTLMGYVTDKASNGDDAIDMAFVESYDLIILDVNLPGKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR++R + +L+ S IED+V+GL GA DY+ KPF +EL AR+R+ +R + Sbjct: 61 EVLRSIRQFNKEIAIIMLTARSDIEDRVKGLDLGASDYMVKPFALKELDARMRSHLRGKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H ++I LS + + G I LT KE ++E L L ++ E + H++D Sbjct: 121 IHQSTVINMSGLSFDTIKREASYGGKIIPLTVKETGILEYLFLNSERFISAEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V + LRKKL +A G KN IE V G+GY + E Sbjct: 181 SNADGFSNTVRVHMSSLRKKLRSACG-KNLIENVIGKGYRIHE 222 >gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 224 >gi|30263158|ref|NP_845535.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47528519|ref|YP_019868.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186004|ref|YP_029256.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165869195|ref|ZP_02213855.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632295|ref|ZP_02390622.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637425|ref|ZP_02395705.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705083|ref|ZP_02895548.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650226|ref|ZP_02933227.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564881|ref|ZP_03017802.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227813979|ref|YP_002813988.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603313|ref|YP_002867425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254723170|ref|ZP_05184958.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738231|ref|ZP_05195934.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742601|ref|ZP_05200286.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752546|ref|ZP_05204582.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761062|ref|ZP_05213086.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257792|gb|AAP27021.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47503667|gb|AAT32343.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179931|gb|AAT55307.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164715921|gb|EDR21438.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514932|gb|EDR90298.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532593|gb|EDR95229.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129938|gb|EDS98800.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172084178|gb|EDT69237.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564198|gb|EDV18162.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227002806|gb|ACP12549.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267721|gb|ACQ49358.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 224 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +T V +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 181 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 224 >gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ AL I L ++V ++ D + + D IILD+ + + G + Sbjct: 3 KILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKGTQ 62 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ L+ + PV I+S SS D V GL+ GADDYI+KPF+ + L+A+I+ ++R+ Sbjct: 63 LLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLRKK 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++I + V+L+ V + I LT KE++++ ++ L++++ Sbjct: 123 QEKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLLSNIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D + LRKKL + N I+++ GY+L Sbjct: 183 GYDADIFTRTVDSHVSSLRKKLEDKG---NLIKSLPKVGYLL 221 >gi|310778072|ref|YP_003966405.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747395|gb|ADO82057.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 230 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++DD + I+ L EN G + + FD IILD+ L D GF+ Sbjct: 5 KVLLVDDDIEICQMIKKALDPENIETLTISTGREARNVINSQAFDLIILDIMLDDTDGFQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ ++ I PV LSG DK+ L GADDYI+KPF+ L+A+I+A +RRS Sbjct: 65 LLKKIQAEDIEIPVIFLSGKQQDYDKILALGMGADDYITKPFSMSVLIAKIKAHLRRSDK 124 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I +N+D + G I L+ KE +++ N TKE Sbjct: 125 IKELQTSSRKITKAPFVLNIDTYQLFKDGEEIFLSSKEIMLMKFFMENPNRVFTKEQLYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + I V+I LRKK+ + + YI+TVWG GY Sbjct: 185 KVWN-NTIIDNNSIMVYIRHLRKKIEDDSKNPEYIQTVWGIGYKF 228 >gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis] gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104] gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68] gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium] gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842] gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi] gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi] gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi] gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245] gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium] gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis] gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104] gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium] gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68] Length = 219 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD + +++ L + V G + + +ILD+ L + G Sbjct: 3 IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R TP+ +++ +S E+++R + ADDY++KPF + L+ R+ A++RR Sbjct: 63 ELLREFRAK-NDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR-S 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G L++ + TV G + LT KE++++ LL K TLT E+ L+ ++ Sbjct: 121 GALAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + I LR KL I+T+ G GY L E+ Sbjct: 181 YDFEGDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219 >gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC 43969] gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC 43969] Length = 241 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + + + I+LDL L G + Sbjct: 16 VLIVEDEPKLGQLLVDYLQAAGYRTQWITNGVEVVAAVRQAPPAIILLDLMLPGSDGITI 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 76 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQQ 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 135 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL + G K +I V+G GY Sbjct: 195 RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWEAE 236 >gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 227 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 1/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + +++ +E + V++ G G+ CK ++LDL L + G EV Sbjct: 4 ILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLMLPGLSGREV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ++ TPV ILS +S + DKV L++GADDY++KPF+ EL+AR++A +RR+R Sbjct: 64 CKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRTRRT 123 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q G+++V+ V G + LT E++++ + ++ L+ ++ Sbjct: 124 VQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGVWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +D I KLR+KL + TV G GY A Sbjct: 184 NFHLTTRTVDNQILKLRQKLEADPANPVHFRTVHGFGYKFVPQA 227 >gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L+ E +++ GE+ +E+ K E +I+D+ + + G Sbjct: 8 ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVMMPRLDGIRA 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ ILS + DK+ GL GADDY+ KPFN ELVAR+++ +RR Sbjct: 68 TLKIREESSI-PIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 126 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ S+ G LS+N D K V V G + LT EY ++ LL + + Sbjct: 127 GNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + +N Sbjct: 187 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234 >gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ANDSATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221 >gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] Length = 246 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 16/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDDK + IE+ L+ + + V+ G +G+E+ + E I+D+ + + G Sbjct: 11 RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIMMPRMDGVT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR PV LS S DK+ GL GADDYI+KPF EL+AR+ + +RR Sbjct: 71 MVIRLR-EHYDFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYNR 129 Query: 122 HA--------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 ++ G L +N D + V G LT E++++ LL Sbjct: 130 FMALLNRKEEKDGGENSNIYRIGGLELNEDTVELMVDGEPAKLTPMEFKILSLLMKNPGH 189 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ R + V + +R+K+ Y++ VWG GY + + Sbjct: 190 VFSADDIYERVWNERA-INTDTVMVHVRNIREKIELDPKKPKYLKVVWGVGYKIEK 244 >gi|318040455|ref|ZP_07972411.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 239 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL +DD L +EL L+ E + V+ G + + D ++LD L D+ G EV Sbjct: 6 VLLADDDARLRQFLELELREEGYAVHSCGDGIGALTQIRQEPPDLLVLDWMLPDLSGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR + PV +L+G +++D+V L +GADDY+ KPF+ EEL+AR+RA+ RR Sbjct: 66 CQRLRSTGVQVPVLMLTGRDAVKDRVEALDAGADDYLVKPFSIEELLARLRALARRGASA 125 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L+ DL +NL + V G +HL+ E+Q++ L ++ L+ Sbjct: 126 SGPASEQTDLLELEDLQLNLASHEVSRAGTSVHLSATEFQLLRCLMAEPGRVQPRQNLLD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230 ++ + ++DV++ LR+KL G I+TV G G++L+ KD Sbjct: 186 QVWGTNFVGDANVLDVYVRYLRRKLEP-PGRPTLIQTVRGVGFLLKAGPVKDAAP 239 >gi|317506815|ref|ZP_07964589.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254889|gb|EFV14185.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD+A+ S+ L ++V + G + + DA++LD+ + + G Sbjct: 1 MDILVVDDDRAVRDSLRRSLSFNGYSVRTAENGIEALSQILEDRPDAMVLDVMMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ ++ ++V GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 EVCRRLRGSGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DLS++ + V I LT E+ ++E+L LT+ L Sbjct: 121 PQLEPGVEALTFQDLSLDPATRDVRRGEREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V+I LR+K I TV G GYVLRE Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRKTEAEGEN-RLIHTVRGVGYVLRE 225 >gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 229 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++++A + L+ F V + + GE G+ +FD +ILDL L + GFE Sbjct: 3 RILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICRKVR-EVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|241114102|ref|YP_002973577.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|240868675|gb|ACS66333.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L ++D +ILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGMDGRHLAMTGDYDLLILDVMLPDLEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR A+++ PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R+ + R S Sbjct: 61 QILHALRSAELAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRSLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI LT KE+ ++ELL+ R L + + + ++ Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRIALTSKEFSLLELLARRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV I +LR K+ + I TV G GYVL E Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNF-EPKLIHTVRGMGYVLEGPEDGE 228 >gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656] gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656] gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +D+K + +I + L S+ + V G + +++ K + +++D+ + + G E Sbjct: 3 KVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIVKHNDVHLVLMDIMMPVMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + +R + PV +L+ S DKV GL GADDY++KPFN EL AR+++ +RR Sbjct: 63 AMVEIR-KISNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIRRYML 121 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +V G + ++ +KTV V G +LT EY +++LL + Sbjct: 122 LGAGNTSAGKLVIGGIELDDKSKTVTVDGEAANLTRTEYDILKLLMEHPGEVYSPNQIYA 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LR+K+ Y++ +WGRGY + Sbjct: 182 KVWKDEPYGTENTVAVHIRHLREKVEINPAEPRYLKVIWGRGYKI 226 >gi|226304507|ref|YP_002764465.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183622|dbj|BAH31726.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA +I L +E F V G+DG + EFD I+LD+ L G+ Sbjct: 1 MRVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFAIACSDEFDVIVLDIMLPGKHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + TP+ +LS D GADDY+ KPF+ +AR+RA+VRR Sbjct: 61 DIVRDLRARGVWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVFLARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDLS++ V G + LT +EY ++E L +TK + ++D Sbjct: 121 PQRPSILTVGDLSLDPAKHQVIRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + I++V+I LRKK+ + G + IET+ G GY A Sbjct: 181 TNYEGDENIVEVYIGYLRKKV-DLPFGTHSIETIRGIGYRFVGTA 224 >gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72] gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp. BH72] Length = 228 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD +A I LK + V G + FD +ILDLGL +PG Sbjct: 1 MRILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K + PV IL+ +ED+VRGL +GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRR-G 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G+LS + + V++ G + L+ +E ++E+ LR ++K+ ++HL Sbjct: 120 TGQPRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E I+V++ +LRKKL + I TV G GY L Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEASG---VRIVTVRGLGYCLE 218 >gi|254975419|ref|ZP_05271891.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092806|ref|ZP_05322284.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314548|ref|ZP_05356131.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517223|ref|ZP_05384899.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650329|ref|ZP_05397231.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306520295|ref|ZP_07406642.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 232 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + +LD+ L DI G Sbjct: 4 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + +DK+ G SGADDYI KPF+ +EL+ R+ A++RR Sbjct: 64 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 123 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + +S ++D + + G I LT E+ +++ L +L+++ L+ Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKEE 232 >gi|332652940|ref|ZP_08418685.1| response regulator DrrA [Ruminococcaceae bacterium D16] gi|332518086|gb|EGJ47689.1| response regulator DrrA [Ruminococcaceae bacterium D16] Length = 228 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ AL ++ +L + +E + DA++LD+ L D GF Sbjct: 4 RILIVDDEPALQSMVQEILSQAGYETKTALSCAQALEQFRTAVPDAVLLDVMLPDGDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR PV LS E ++RGL GADDYI+KPF +EL+ R+RA++RR Sbjct: 64 LFGKLR-EIRDVPVLFLSARDEDESRLRGLGLGADDYITKPFLPQELLLRLRAVLRRVYR 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L G+ +N TV G LT KE+ ++ L + +T + + L+DG Sbjct: 123 EEVCLARLGEAEINWGKGTVRRGGQETALTAKEFALLRKLWEARGNIVTIDALCSALWDG 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + V I +LR+K+ ++ TV G GY LR+ Sbjct: 183 PLVGYENTLMVHIRRLREKVEADPSHPQFLLTVRGLGYRLRQEG 226 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +EDD A+ +++ L E + V G+EL + FD ++LD+ L D G+E Sbjct: 3 KICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYE 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + +R PV L+ + V GL GADDYI+KPF EL++R+ ++ R Sbjct: 63 ICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A++ I DLS+N A V + LTG EY+++ +L+ +N +T++ + Sbjct: 123 GKKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEAI 182 Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D G + + V+I +LR+KL + I T+ G GY L E Sbjct: 183 WDLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKLGE 228 >gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 63/215 (29%), Positives = 119/215 (55%), Gaps = 1/215 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL +D+ + +E+ L++E F V G ++ + D +LD + + G ++ Sbjct: 8 VLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV +++ ++D+V L++GADD+I+KPFN E++AR +A++RRS+G Sbjct: 68 CRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQGF 127 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ GDL +N +T + G + LT +E+ ++E L++ + H++ Sbjct: 128 SSDVLQVGDLVLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWGDD 187 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 + ++DV++ LRKKL A G + I+TV G Sbjct: 188 YFGDENVVDVYVRYLRKKLE-ATGSQRVIQTVRGV 221 >gi|320533794|ref|ZP_08034390.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133999|gb|EFW26351.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 242 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D+ + S+ L+ + V + G + ++L Y+ D I+ D+ + + G E+ Sbjct: 13 VLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDGREL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R A TP+ +L+ + + ++V L GADDY+SKPF+ EL +RIRA++RR+RG Sbjct: 73 VRRVRAAGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRRTRGV 132 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 AQ ++ G+L + ++ V + G + LT K +++ L +E L Sbjct: 133 AQPLTSAPRLMAGELVLERTSRRVTLAGREVTLTPKATMLLDYLMSHPGELHAREELLAS 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + +D + ++R+ L + A YIETV GY R + Sbjct: 193 LWGIDFATSTRAVDHRVREIRQALGDDAAHPTYIETVPSVGYRFRAEVR 241 >gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED++ +A L+S + + G+ G+ ++D IILDL L + G Sbjct: 1 MKTILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ R +R P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 61 FEICRRIRQEADI-PIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY 119 Query: 120 RGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++N + V ++ + LT KE+ ++ LL+ N TKE Sbjct: 120 DRLTGDSREARESLTIRGLTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEE 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + V I +LR+K+ YI+TVWG GY L+ Sbjct: 180 LFERVWGLESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRLK 228 >gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 249 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E + V G + + + + + DA++LD+ L D G E Sbjct: 25 RVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVMLPDFSGLE 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV L+ ++ED++ GL +G DDY++KPF+ EE+ R+RA++RR+ G Sbjct: 85 VLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T GDL+++ D++ V G + LT E++++ L L+K L+ + Sbjct: 145 VTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILDRV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I++++I LRKK+ A + I T+ G GYVL+ Sbjct: 205 WSYDFGGQANIVELYISYLRKKI--DADREPMIHTMRGAGYVLKP 247 >gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A + L++E F V G + + D +LD+ L DI GF+ Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV +L+ DK+ GL GADDY++KPFN E+VAR++ +RR + Sbjct: 64 LLQTIR-KTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 HAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + +++ + G + LT E++++ L + + + E Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+KL+ I+TVWG GY++ + Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC 27560] gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC 27560] Length = 234 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I++ L E +NV G + +E+ K + +++D+ + + G Sbjct: 8 ILVCDDDKDIVEAIDIYLSKEGYNVIKAYDGMEAMEILKKEDIQLLLIDVMMPRLDGIRA 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K S P+ ILS S DK+ GL GADDYI+KPFN EL+AR+++ +RR Sbjct: 68 TLKIR-EKSSIPIIILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRRYTRL 126 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G L ++ + K V+V G + LT EY ++ L T + Sbjct: 127 GTIAEPKSNVYSVGGLEIDDECKEVKVDGEIVKLTPFEYNILLFLVKNPGRVFTIDQIYE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 187 AVWNEEAVAADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 234 >gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1 str. 16M] gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19] gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 6 str. 870] gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 3 str. Tulya] gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 4 str. 292] gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 3 str. Ether] gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 9 str. C68] gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68] gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus] gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1 str. 16M] gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Brucella melitensis biovar Abortus 2308] gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19] gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis ATCC 23457] gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68] gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224 >gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP 31758] gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC 29473] gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC 33638] gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC 43970] gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia pseudotuberculosis IP 31758] gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC 33638] gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC 29473] gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC 43970] Length = 239 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|313902445|ref|ZP_07835847.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467243|gb|EFR62755.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 232 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ + L L+ E F V + ++LDL L D G + Sbjct: 5 HILVVDDEPGIREVCRLYLEREGFAVREAASLAGARAALRGEAPALVVLDLMLPDGSGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R L + TPV L+ + D+V GL+ GADDY++KPF+ ELVAR+RA++RR+R Sbjct: 65 LCREL--VEAGTPVVCLTARADETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARA 122 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G +V+L A+ + V G + T KE+ ++ L + T++ L + Sbjct: 123 AKEPAPVTVRFGRCAVDLAARRLWVGGREVACTPKEFDLLALFVTHPHRVFTRQQLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + +DV + +LR+K+ Y++TVW GY + Sbjct: 183 WDFSYAGDTRTVDVHVQRLRRKIEPDPQHPRYLKTVWSVGYRFDPEGE 230 >gi|170757163|ref|YP_001781483.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122375|gb|ACA46211.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L+++D+K + +IE+ L+S E+ N+ G D +++ + E IILD+ + Sbjct: 1 MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G +R + + P+ +LS + DK+ GL GADDYI+KPFN ELVAR+ + + Sbjct: 61 LDGIRTCMKIR-ERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQL 119 Query: 117 RRSRGHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR I L +N + V V G ++ LT EY ++ LL+ Sbjct: 120 RRYTNLGNFPKTVDDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +LRKK+ YI+ +WG GY + + Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233 >gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 223 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|160932807|ref|ZP_02080196.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753] gi|156867881|gb|EDO61253.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753] Length = 225 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L I+ LK ++V GE+ + E+DA++LD+ + + G Sbjct: 1 MRILIAEDERDLNQLIKKRLKDAGYSVDACFDGEEVFDYLLCAEYDALVLDIMMPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV +L+ SIED+V GL +GADDY+ KPF EEL+AR+R ++R+ Sbjct: 61 TVLKKLRREENALPVLLLTAKDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVLLRKPV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DLS+++D + V + L+ KEY ++ + L+++ H++D Sbjct: 121 TEKSSILNVADLSLHVDTRRVFRGNRELQLSSKEYSLLHYMMQNAGVVLSRDKLEQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LRKK+ + K I TV G GYVL+++ Sbjct: 181 YDFSGGSNVIDVYIRFLRKKV-DEGYDKKLIHTVRGHGYVLKDD 223 >gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp. HTCC2999] Length = 228 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ + I+++L+ F V + + ++ D ++LD L G ++ Sbjct: 5 ILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWMLPGGSGVQL 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R + + + PV +L+ +DK+RGL +GADDYI+KPF+ +ELVARI+A++RR Sbjct: 65 ARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVMRRVT 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I L ++ + V G I + E++++ ++E L++++ Sbjct: 125 PTAKEEPIHFSGLVLDPISHRVTANGVSIEMGPTEFKLLHFFMSHAERVYSREQLLDNVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L + I+TV G GY Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALESQGYDA-MIQTVRGAGYRF 225 >gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L + L + V + GE L K +D ++DLGL G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ R P+ IL+ +DKV GL++GADDY+ KPF+ EL+AR+ A++RRS Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G ++++ AK V++ G + LT EY +E L R ++K HLY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL I T+ G+GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVN-KPITTLRGQGYRF 220 >gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 222 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD++L+ ++ L+SE + V + EF +ILDLGL D+ G Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR K S P IL+ S+ DK+ GL SGADDY++KPF+ +EL+AR+R + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SLI G++ ++L V + L+ +E+ +++ L +K LY+ Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE I+V I LRKKL +I+T+ G GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLPKD-----FIKTIRGVGY 214 >gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++ + L+ F+V + + G G+ K EFD +ILD+ L I GFE Sbjct: 3 RILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R P+ ++S DK+RGL GADDYI+KPF+ ELVAR+ A + + Sbjct: 63 ILKRVR-DVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121 Query: 122 HAQSLIVTGDLSVNLDA--------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V V G +++ KEY+++ + N +E Sbjct: 122 LKSKYGNENPNETFTIRGLEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGREE 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ Y+ETVWG GY R Sbjct: 182 LFERIWGFDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRFR 230 >gi|293401478|ref|ZP_06645621.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305116|gb|EFE46362.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 225 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL +EDD+A+A + L+ E + V + + L + FD ++LD+ L D G+ Sbjct: 1 MKILFVEDDQAIALGLVYSLEKEGYEVIHCVSQKAALGLLEAQVFDLLLLDVSLPDGDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + + PV L+ + + V GL G DDY++KPF +EL++RI++++RR + Sbjct: 61 TICKQAKH-LHDVPVIFLTALDDEVNVVMGLDLGGDDYVTKPFRIKELLSRIKSVLRRYQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ L +++ V +G + LT EY+++ + + L++ L ++D Sbjct: 120 KDALDIVQIQHLEIHIREGKVYREGSEVFLTALEYRLLMVFVNHQGQVLSRSQLLEGIWD 179 Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + V+I +LR+KL A I+T+ GRGY + + Sbjct: 180 VAGDFVNDNTLSVYIKRLREKLEKDAAEPEIIKTIRGRGYRMEK 223 >gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 234 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 4/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+++ED+ L ++ L+SE ++V GE+ L +D ILD + I G E Sbjct: 4 KIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIPKISGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R + P+ +L+ D+VRGL +GADDY++KPF+ +EL+ARI+A+ R Sbjct: 64 LCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++V+G++ ++ A V + L EY+M+E+ L++ L+ + Sbjct: 124 APERMSDILVSGEIVMDRGAHKVTRGAREVRLGPTEYRMLEVFMESPRRVLSRNQLLDRV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E + + +DV I +LRK L + I TV G GYV D Sbjct: 184 WGQSSEVDERTVDVHIGRLRKSL-IRGNESDPIRTVRGAGYVFDGREADAP 233 >gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 223 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L SI +L E F V GEDG+ L +D I+LD+ L I GF Sbjct: 1 MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA+ R Sbjct: 60 EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYMLKEQ 223 >gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F+V V + GE G++ ++D ILDL L + GF+ Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVR-NVKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++I L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228 >gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 223 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGTPLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 246 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD A+ I L+ +++ G G L + D I+LDL L + GF Sbjct: 3 RILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR PV +LS + +DKV G +GADDY++KPF E++AR+RA++RR+ Sbjct: 63 VCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAICFENTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + ++ + Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPSSEQMPLSTD 242 Query: 235 TA 236 A Sbjct: 243 AA 244 >gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 226 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K + + L + + V G++ +E +D I+LDL L + G Sbjct: 1 MRLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 61 ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G++ + + + + LT KE ++E L + +++E + H++D Sbjct: 121 VQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LRKKL G + I+ G GY +RE + Sbjct: 181 ATADSFSGAIRVHMSSLRKKLKAKLGY-DPIQNKVGEGYKIREES 224 >gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V + + GE G+ + +FD +ILDL L + GFE Sbjct: 3 RILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICRKVR-EVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + L E + V T GE +E+ + D I+LDL L + G E Sbjct: 5 RILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGMDGLE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + L+ + P+ +L+ D V GL+ GADDY++KPF+ + L+ARIRA++RR Sbjct: 65 VAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRRK 124 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I +L ++ + V V I LT E+ ++ L R T+ ++ Sbjct: 125 ATETPKPSDVIKVQNLIIHPGRREVRVDDKVIDLTYTEFGILRYLVQRPGWVFTRSQIVD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I LRKKL YIETV G GY RE Sbjct: 185 AVRGSDYFVTDRSVDVQIVGLRKKLG---FMGKYIETVRGVGYRFRE 228 >gi|302866216|ref|YP_003834853.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502774|ref|YP_004081661.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302569075|gb|ADL45277.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409393|gb|ADU07510.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 218 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L +E F V V G DG++ + E+DA+ILD+ L + G+ Sbjct: 1 MRLLVVEDETRLAAALRRGLSAEGFVVDVAATGPDGLDAARHGEYDAMILDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVVRRLRAEQRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ + V + LT +EY +++ L R ++K L+H++D Sbjct: 121 PRRPTVLTVGDLRLDPARRRVTRADTEVVLTSREYALLDYLMRRPGEVVSKTELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V++ LR+K+ +ETV G GY L Sbjct: 181 ASVDTAPNAVEVYVGYLRRKIGR-----ERLETVRGAGYRL 216 >gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN +VY GE+ + +FD ILD+ L DI G Sbjct: 4 KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R + + PV +LS DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + L++N+ + G + LT E+ ++ +L R+ + ++ E Sbjct: 124 YNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+ + YI+TVWG GY + E Sbjct: 184 LFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234 >gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] Length = 238 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD+ + + L + V G++ D ++LDL L G Sbjct: 6 HLLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + RA+R PV +LS M D++ GL+ GADDY+ KPFN ELVARI+A++RR + Sbjct: 66 LCRAIRADGGP-PVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRRVQT 124 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G + + + QG + LT EY+++ L+ R L+++ Sbjct: 125 PGATPVNGAGALAFCGYVLDQAQRRLTDPQGAEVTLTAGEYELLVALATRPRRVLSRDDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L P + IDV I +LR+K+ I+TV GY+ + Sbjct: 185 LEITRGRSAGPFDRSIDVQISRLRRKIEPDPADPAIIKTVRSGGYIFSPEVTQQ 238 >gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|226305655|ref|YP_002765615.1| two-component response regulator MtrA [Rhodococcus erythropolis PR4] gi|229489658|ref|ZP_04383521.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184772|dbj|BAH32876.1| two-component response regulator MtrA [Rhodococcus erythropolis PR4] gi|229323755|gb|EEN89513.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 225 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++L+ E F+ YV G + + D ++LDL L + G + Sbjct: 4 RILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTLALAAVRETRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ D+ +++ A V +I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGSEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221 >gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A I L LK+ENF G+D + + D ILD+ L DI GF Sbjct: 4 KILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPDIDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R + PV +L+ + DK+ GL GADDYI KPFN EL+AR++A +RR Sbjct: 64 ILQKIR-ETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRRYTK 122 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G L +N + LT E+ ++ +L + ++ E Sbjct: 123 YNDGGKPQEDIIDFGGLLMNRSTHECTFNERELTLTPIEFDILWILCENRGQVISSEQLF 182 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + + V I LR+K+ G +I+TVWG GY + + Sbjct: 183 EQVWHEKYYKQSNNTVMVHIRHLREKMGGPMGKTEFIKTVWGVGYKVEK 231 >gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 9/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +IEDD+ + + K E F+V G+ E K + D ++LDL + ++ G E Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + +R K P+ +L+ S+ DK+ GL+ GADDY++KPF+ EL+AR++A++RR Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ GDL ++ + V ++G +HLT +++++ L + L+++ + Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 H++ + + IDV I KLR+ L N I+T+ G GY Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYKWE 226 >gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 242 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F + G DG+EL K +D +ILD+ L + G+ Sbjct: 13 MKILIVEDEPKTGAYLRQGLTEAGFVTDLARDGWDGLELAKSGHYDLMILDVMLPGLDGW 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +VL +R A I TPV L+ +ED+V+GL+ GADDY+ KPF EL+AR+ + + R Sbjct: 73 QVLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMRRGQ 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL ++L + G RI LT KE+ ++EL RK L + + + ++ Sbjct: 133 AALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIASQVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +IDV + +LR K+ + I TV G GYVL +A+ Sbjct: 193 DMNFDSDTNVIDVAVRRLRVKI-DEGFDAKLIHTVRGMGYVLETSAE 238 >gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80] gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587] gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3] gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457] gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33] gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2] gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX 330286] gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33] gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9] gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae 12129(1)] gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236] gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51] gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226] gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10] gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS 101] gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE 91/1] gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT 5369-93] gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80] gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587] gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3] gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51] gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457] gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33] gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226] gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2] gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae 12129(1)] gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9] gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33] gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX 330286] gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae MJ-1236] gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10] gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS 101] gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE 91/1] gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT 5369-93] gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae LMA3894-4] Length = 240 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 217 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L ++L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + PV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIRKKDDT-PVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I+ ++ A+ V V+G +++LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KPSSNDILF----IDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D I LR+KL ++ I+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDCIKTVRGYGYKFE 214 >gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 267 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + ++ L++E F V G +E + ++ D ++LD+ L G E Sbjct: 42 RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A PV +L+ D + GL GADDY++KPF+ E+ AR+ ++RR Sbjct: 102 VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 160 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L V+ + V V+G +HLT E+ ++ L+ L++E Sbjct: 161 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 220 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 221 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPAP 267 >gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 234 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 14/236 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ E I+D+ + + Sbjct: 1 MKSYNVLVVEDEKEIADAIEIYLKNQGYNVFKGYNGIEGLEIISKEEIHLAIVDIMMPRM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +R Sbjct: 61 DGIAMTMKLR-EKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQLR 119 Query: 118 RSRGH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 R + V G L +N+D + V G+ + +T E++++ LL Sbjct: 120 RYSKFLSLVGVEKEKSNSFVIGGLELNVDTVELTVDGNPVKITPIEFKILHLLMQNPGRV 179 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +++ + I V + +R+K+ Y++ VWG GY + + Sbjct: 180 FSPEEIYERVWNEQA-INTDTIMVHVRNIREKIEINPKNPKYLKVVWGVGYKIEKQ 234 >gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY+SKPF+ EE++ARIRA++RR+ Sbjct: 61 AVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALLRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++R+KL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRRKLDVD-----IIQTVRGLGYLL 216 >gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus ATCC 53653] gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + +I L++E F V G ++ + ++ D ++LD+ L G E Sbjct: 21 RILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLPGFDGLE 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R + A+ PV +L+ D + GL GADDY++KPF+ E+ AR+ ++RR Sbjct: 81 VCRRV-QARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 139 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L ++ + V V+G +HLT E+ ++ L+ L++E Sbjct: 140 AALAANTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANSPRAVLSREQL 199 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPA 245 >gi|225408012|ref|ZP_03761201.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme DSM 15981] gi|225042445|gb|EEG52691.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL++D+K + +E +L+ + F + G I C+ + DA++LD+ L D+ G Sbjct: 4 RILLVDDEKDILDLLEEVLRRDGFREIRRAKDGAGAIRACREFLPDAVVLDIMLPDMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + LS + DK+ GL G DDYI+KPF+ E+V R++A +RR + Sbjct: 64 EVCKQIR-EFSYCSILFLSSKNDDIDKILGLSCGGDDYITKPFSPREVVFRVKAQLRRQQ 122 Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G +SV+ ++ G + LTG+E+ ++ L + ++KE Sbjct: 123 YQGAGPAAAGTLLTAGPISVDRESGRAYKDGRELSLTGREFLLLACLVEHADKIISKERL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I V I LR+K+ ++ + TV G GY L++ Sbjct: 183 YEQVWGAYSAICDNTIMVHIRHLREKIEDSPSSPRQLVTVKGLGYKLKK 231 >gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 232 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F+ + G + + D ++LDL L + G +V Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LR+ + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKELRL-VSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGDT 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ G + +++D+ TV V G +++ KE+ ++E L LT+ Sbjct: 123 EAEAAEDDTDDQILEGGRVRMDVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRGQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRHLVTVRGLGYKYE 231 >gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ +++ IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|239947000|ref|ZP_04698753.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921276|gb|EER21300.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of Ixodes scapularis] Length = 237 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 133/223 (59%), Positives = 171/223 (76%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLDA++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLN+LY Sbjct: 121 GHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAILELLILRRGTILTKEMFLNYLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ +K+E + + G + + + IILD+ + D+ G Sbjct: 1 MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+RA++RR+ Sbjct: 61 TEVLKEVRKDNPV-PILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119 Query: 120 RGHAQSLIV----TGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L++N D+ V G ++LT E+ ++ LL+ N + + Sbjct: 120 QNGMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR KL A GG ++TVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGYKIE 227 >gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ A+ + L L V + E + D ++LD L D PG Sbjct: 4 KLLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQL--PQADLVVLDWMLPDEPGVR 61 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR + PV +L+ + D+V GL GADDY++KPF+ EL+ARI+A++RRS Sbjct: 62 LLERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALLRRS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G L+++L+ + G + LT +E+ ++ L+ ++E L ++ Sbjct: 122 GKSGRIER--GGLALDLERHQASLDGRPLDLTRREFDLLAFLARHPGRVYSREELLERVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D + +LR+KL ++ET+ G GY RE Sbjct: 180 GPEFMGTARTVDQHVAQLREKLQEDPKLPRFLETLRGVGYRFRE 223 >gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 223 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD I+LD+ L + GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 239 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + + + L+ E V G + +E + D ++LD+ + + GFE Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR S PV +L+ ED+++GL+ GADDYI KPF+ ELV+RIRA++RR Sbjct: 69 LRRLR-QASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHYTP 127 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V V G R++L EY+++ L +T E L+ + Sbjct: 128 PPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLSKV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ++I LR+K+ YI T G GY + Sbjct: 188 WGPEYRDETHYLRLYITYLRQKIEEDPANPKYILTERGIGYRFVD 232 >gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 239 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F+V GE L F ++LDL L G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSTEESVVEFGEFRLNLGTREMFRGEESMPLTSGEFAVLKALVTNSREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +D++ + + + E F V GE+ + + I+LD+ + + GFE Sbjct: 3 KMLIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ +K+ GL GADDYI KPF+ E++AR+RAI+RR Sbjct: 63 VCRQIREESAV-PIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRLSR 121 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+++LD T V G I LT KE +++ L+ + +++ L+ + Sbjct: 122 DGGARLQFFSYRGLTIDLDTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + +D I +LR KL I T+WG GY N ++ Sbjct: 182 WGYDYYGDNRTVDSHIRRLRAKLDKRDHPGWSIATIWGVGYRFEVNDEE 230 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S DL ++ + V+ I LT +E+ ++ L +N L +E + ++ Sbjct: 124 VKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ + TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LVHTVRGVGYVLK 226 >gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 219 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + LK+ F + T G + L FD IILD+GL DI GFEV Sbjct: 4 ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR + PV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R Sbjct: 64 LQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDTTG 123 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + D+ ++L +T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 124 PDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL +ETV G GY L Sbjct: 184 DFDPGSNVVEVYVSYLRNKLGR-----QRVETVRGMGYRL 218 >gi|209546223|ref|YP_002278113.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539080|gb|ACI59013.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 230 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V + D I+LDLGL DI G + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVQEAANAAGARQSVADSLPDLIVLDLGLPDISGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+A R +S P+ ILS + V L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQAWRDEGLSIPIVILSSRTDEAGIVTALESGADDYVTKPFGVNELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G I L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGQDIKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V+I +LR+K+ +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYIRQLRQKVEQIPDQPHYITTETGVGYRLREP 229 >gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ L ++ L++ F + GE + + D ++LD+ L D+ G EV Sbjct: 4 VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 R ++ PV +L+ D+V G + GADDY++KPF+ ELV R++A++RR+ Sbjct: 64 CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRAG 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + G + V++++ V G + LT E++++ L R ++E L + Sbjct: 124 ARPSERPPESVGPIRVDVESHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLEDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E E + +D + +LR+KL G++ +ETV G GY L + ++ Sbjct: 184 WEMSAEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPSE 228 >gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ + + + +++ D ++LD G + Sbjct: 4 RILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ EDKVRGL+ GADD+++KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRRS 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ + V V + + E++++ + ++E L+++ Sbjct: 124 APTCLEDPIDVQGLQLDPVSHRVTVGDEVLDMGPTEFRLLHFFMTHQERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAV-THSGHDRLIQTVRGAGYRF 225 >gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A + L + V G DG+ L K +E++ IILD+ L ++ G+ Sbjct: 1 MRILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +VL LR + + +L+ S + DKVRGL++GADDY+ KPF EL+AR+RA + R Sbjct: 61 QVLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSD 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +I DL ++ G RI LT KE+ ++ L L++ ++ ++ Sbjct: 121 HPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +++V I +LR K+ + I T+ G GYVL + Sbjct: 181 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLEK 223 >gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1] gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1] Length = 223 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V GE G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDRLIGDGIKAGLSKLGFSVDWFTSGESGCNALEAAPWDAVILDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G++ + + +V I L +E ++EL LT+ LY Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMRDDEAIELKSRELALLELFMRNPGRVLTRSQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++V I LRKKL + +I T+ G GY L D+ Sbjct: 181 WDADVSSNAVEVHIHHLRKKLGS-----GFIRTLHGVGYTLGAAECDQ 223 >gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ++ + L+ + V + GE + L + D ++LDL L + G E Sbjct: 13 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE---LVARIRAIVRR 118 V R LR + PV +L+ + D+V GL+ GADDY+ KPF+ E VA I R Sbjct: 73 VCRRLR-ERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 131 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ ++ G L ++LDA+ + G + LTG+E+ ++ L ++ L + Sbjct: 132 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + V + +LR+K+ I TVWG GY Sbjct: 192 WGW-SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 232 >gi|148379883|ref|YP_001254424.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931457|ref|YP_001384180.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935275|ref|YP_001387721.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226949220|ref|YP_002804311.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148289367|emb|CAL83463.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927501|gb|ABS33001.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931189|gb|ABS36688.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226840740|gb|ACO83406.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 233 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L+++D+K + +IE+ L+S E+ N+ G D +++ + E IILD+ + Sbjct: 1 MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G +R + + P+ +LS + DK+ GL GADDYI+KPFN ELVAR+ + + Sbjct: 61 LDGIRTCMKIR-ERNNIPIIMLSAKNEDIDKILGLNIGADDYIAKPFNPLELVARVNSQL 119 Query: 117 RRSRGHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR I L +N + V V G ++ LT EY ++ LL+ Sbjct: 120 RRYTNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +LRKK+ YI+ +WG GY + + Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233 >gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268] gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++A + L+ F V GE G++ +D +ILDL L GF Sbjct: 6 KILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLPGRDGFS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116 + + +R K P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + Sbjct: 66 ITQEVRSKKDI-PILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYTR 124 Query: 117 -RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R S +I L ++ A+ V V G + T +E+ ++ L+ N TKE Sbjct: 125 LRDSGKEENEIIEIRGLKIDTTARRVFVNGEEVPFTSREFDLLAFLAAHPNRVYTKEELF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I KLR+K+ A YIET+WG GY + Sbjct: 185 QEIWKMESIGDIATVTVHIKKLREKIEMENAVKPQYIETIWGVGYRFK 232 >gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10] gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP 32953] gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua] gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516] gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F] gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola] gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. F1991016] gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. IP275] gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. E1979001] gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII] gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+] gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92] gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Pestoides A] gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. India 195] gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Nepal516] gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27] gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003] gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10] gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92] gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola] gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. IP275] gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. F1991016] gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. E1979001] gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. B42003004] gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Nepal516] gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. India 195] gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis Pestoides A] gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004] gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038] gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27] gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003] gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G + E+D ++LD+ L G+ Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+RR + Sbjct: 61 TLLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 PRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220 >gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++ + V V G +G+ FD I+LD+ + ++ GFE Sbjct: 5 HILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + ED+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 65 VSKMIRSQSNV-PIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +V ++ +++DA V V I LT KE+++++LL + LT+E + ++ Sbjct: 124 KNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IID I LRKKL+ YI+T+ G GY + E Sbjct: 184 YDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 221 >gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM] gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM] Length = 224 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK + L+ E V + + G + + E+D +I+D L + G Sbjct: 2 MKILVVEDDKTTGAYVAGGLREEGHVVDLIENGREALLQASGTEYDVLIIDRMLPGLDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR AK TPV L+ + ++D++ GL +G DDY+ KPF EL AR+ A R Sbjct: 62 ALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ GDL ++L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 122 ATQEETILRAGDLEMDLMHRKVTRAGQVIDLLPREFALLEQLLRRKGRVQTRTMLLEAVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +++ I +LR K+ + IETV G GY + Sbjct: 182 DISFDPQTNVVETHISRLRAKV-DKPFETELIETVRGSGYRI 222 >gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGVN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SAGHDKLIQTVRGAGYRF 225 >gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 250 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 11/235 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 +RILL++D+ L + L L E + V V G G+ + D I+LD L D G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ + +R + ++TP+ +L+G I D+V+ L +G DDY+ KPF+ EEL+AR+RA+ RR+ Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 RGHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +G S G L++N + + V G +I L+ KEY+++ L L Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++ + ++DV+I LR+K+ + I TV G G++LR+ + Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVE-NKDLPSLIHTVRGVGFILRDES 245 >gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis] Length = 236 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 109/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V E L + D I++D L G + Sbjct: 5 ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSSGINL 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR PV +L+ S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G+L ++ + QG + + E++++ T+ L+ ++ Sbjct: 125 PQLTDDVISIGNLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G +IET+ G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDKHIETIRGSGYRF 225 >gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152] gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152] Length = 229 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 118/226 (52%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L++E + V+ + G++ I+ K I+LD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMPEMDGI 65 Query: 61 EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R K + + L+ +V G ++GADDYI+KP + LV++I++++RR Sbjct: 66 EACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIKSLLRR 125 Query: 119 SRGHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +S GD+ ++ D V G +I L KE+++ LL+ + + +E+ L+ Sbjct: 126 LKSEEESEETLKLGDIVIDRDEYVVYKAGKKIALPRKEFELFSLLTSKPSKVFKREVILD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 186 TVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 226 >gi|332993185|gb|AEF03240.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 237 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A+ + + L + G+ +E EF +ILD+ L + G + Sbjct: 4 KILIVEDDQDIANLMRVNLLELGVEIEHQTDGKVALECALSDEFAIVILDVMLPSMSGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R A + +L+ +S D+V GL+ GADDY++KPF+ EL AR+R+ +R+ Sbjct: 64 ICRKVRDALPMQSIIMLTSKTSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKYHV 123 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q+ G L ++ V + + LT E++++ L+ ++ Sbjct: 124 VQQTQTTQQQIDTPLKLGRLVIDQRNHQVFLSEEELVLTATEFELLHHLASHPGQVFSRS 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ ++ I +LR KL N A ++TVWG GY Sbjct: 184 QLLESVWGYHHSGYEHTVNSHINRLRSKLENDATAPQIVQTVWGVGYKFNPQG 236 >gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L++ + V G + +EFD +ILDLGL + GF Sbjct: 1 MRILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGLPKLHGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR S PV IL+ S+E +V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S+I G L+ + + + I L+ +E ++E+L R ++K+ + L + Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V+I +LRKK+ G I TV G GY L + Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEK 220 >gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A GG++ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 306 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++A+ + + L+ E F V G+ + D ++LD+ L DI GF Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR A P L+ + +DKVRGL G DDY++KPF+ ELVAR+RAI+RR+ Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L + + V G + LT EY++++ L LT+ L+ Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 H++ E +++ +I LR+K+ N I TV G GYVLR Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNV--EPPLIHTVRGVGYVLR 303 >gi|255034088|ref|YP_003084709.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254946844|gb|ACT91544.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 232 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 131/231 (56%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ + I+ L + + + G+ G+++ ++FD IILDL + I G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R R A+++TP+ +L+ + + E+ V GL SGADDY++KPF EL AR+R ++RR + Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ KTV+ G I LT E++++E L N L + L Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++D ++DV+I LRKK+ I TV+G GYV+R++ +D Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDI-KLIHTVFGMGYVIRQSYED 230 >gi|163814357|ref|ZP_02205746.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759] gi|158449992|gb|EDP26987.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIMMPVMDGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 64 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 124 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 184 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 219 >gi|118594517|ref|ZP_01551864.1| osmolarity response regulator [Methylophilales bacterium HTCC2181] gi|118440295|gb|EAV46922.1| osmolarity response regulator [Methylophilales bacterium HTCC2181] Length = 238 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 4/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD + L + +V G + EL Y + I+LDL + + G EV Sbjct: 10 IALVDDDPKIRELTAKYLSDQGLSVVTASNGAELDELRINYNINLIVLDLMMPEESGLEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + LRV KI TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI AI+RR Sbjct: 70 CQRLRVNKIDTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARINAIIRRQTAP 129 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R +++I G+ +L +++ I +T EY ++ + L+++ + Sbjct: 130 VRQSDKTIIKFGNFVFDLTNRSLFKGEKEIQITAGEYDLLRVFVEHPKQPLSRDQIMQLS 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + IDV I +LR+ + +++T WG GY+ +++ Sbjct: 190 KGKELDVFDRSIDVQISRLRRLIEADPNKPKFLQTKWGFGYIFVPDSE 237 >gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 225 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 135/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+++L ++ K E F V + G++G+ L K ++DA I+DLGL ++ G Sbjct: 1 MRLLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R LR A P+ +L+ DKV GL+SGADDY++KPF +EL+AR++A++RRS Sbjct: 61 DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G ++ AK+V V G + LT EY +E L KN ++K HLY+ Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+VFI +LRKKL G +N I T G GY + Sbjct: 181 QDYDRDSNVIEVFIRRLRKKLDPD-GERNPILTQRGLGYRFNADV 224 >gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A I E +V G + +D +++D L ++ G Sbjct: 1 MKILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ALR A+++TP L+ + +ED++ GL++G DDY+ KPF EL AR+ A R Sbjct: 61 SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + GDL ++L + V G I L +E+ ++E L RK T+ M L +++ Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +++ I +LR K+ + I TV G GY + + Sbjct: 181 DIHFDPGTNVVETHISRLRAKV-DKPFDHELIRTVRGAGYRIDD 223 >gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] Length = 229 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 138/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ ++ DL V+L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL D+ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPDLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 225 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE L+ VYV G G EL + +F +ILD+ + + G + Sbjct: 3 KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + + R PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A+ R Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + G I LT KEY+++E + T L++ L +++ Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + ++DV++ LR K+ I TV G GY++ Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDF-EPKLIHTVVGVGYMME 224 >gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD A +L+ + V +++ + + D I+LD+ + I GF Sbjct: 1 MNILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIMMPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R P+ LS S ++D+V GLQ G DDY+ KP+ EL+AR+ A++RR Sbjct: 61 DVCRQIR-RSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRN 119 Query: 121 G---HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + GD++++ V G + LT E++++ L L L+ Sbjct: 120 ADVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELTPLEFRLLYYLMKNAGRILNVSQILS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E E ++ V+I +LR K+ ++ TV GY Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFEP 226 >gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 226 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ I+L+ED+++LA + L+ E + V G + +E+ K + I+LD L Sbjct: 1 MKKAVIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPIY 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR +R + P+ +++ S D L G DDYI+KPF EEL+ARIR ++R Sbjct: 61 DGLTVLRRIR-QSSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVLR 119 Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + + +NL V G R+HLT KE+ ++ L T++ L Sbjct: 120 RLGQKKAEKYDYKFRPFEINLLKHQFMVDGKRVHLTPKEFSLMVALIKEPGVVQTRDDLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ + + +DV+I LR KL ++ I+TV G GYVL + Sbjct: 180 NEIWGYDFDGQTNTVDVYIRALRNKLGKY---RDLIKTVRGIGYVLGDE 225 >gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ L ++ L++ F + GE + + D ++LD+ L D+ G EV Sbjct: 4 VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 R ++ PV +L+ D+V G + GADDY++KPF+ ELV R++A++RRS Sbjct: 64 CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRSA 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + G + V++DA V G + LT E++++ L R ++E L + Sbjct: 124 ARPSDRPPESVGPIRVDVDAHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLEDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E E + +D + +LR+KL G++ +ETV G GY L + ++ Sbjct: 184 WEMSSEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPSE 228 >gi|316934891|ref|YP_004109873.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602605|gb|ADU45140.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 241 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L + ++D +++D L G Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHIADLAGDGEEGLALAESGDYDVLVVDRMLPKRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +LR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 76 SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V G + L +E++++E L +T+ M L +++ Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 196 DYHFDPQTNVIDVHISRLRGKIDKGFDRP-LLHTIRGAGYMIRD 238 >gi|268318212|ref|YP_003291931.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262335746|gb|ACY49543.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 243 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 117/230 (50%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + K E F V + G + +E ++ D IILD+ + ++ G E Sbjct: 19 RVLIVDDEDDILALLAYNFKREGFEVELARDGVEALEKAARWQPDVIILDIMMPNMDGIE 78 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R P+ +L+ + ED+++GL+ GAD Y+ KP + L+++ RA++R + Sbjct: 79 VCRRIRRDARLRTTPILMLTARTEEEDQIQGLEIGADMYVGKPVSVPVLLSQTRALLRGA 138 Query: 120 RGHAQSLI--VTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + DL ++ D V +G + L KE++++ L+ T++ Sbjct: 139 RRYETPPDLLRIHDLEIDRDRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQE 198 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ + +DV I K+R+KL + YIETV G GY RE Sbjct: 199 LLDEVWGRDVYVVDRTVDVHIRKIREKLGSH-----YIETVKGVGYKFRE 243 >gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 227 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ I ++L+S++F+ D G +E + + D ++LDL L G E Sbjct: 4 KILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D VRGL++GADDYI+KPF +ELVAR+RA +R+S Sbjct: 64 VCREIR-RTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + GDL +++ V I LT E+ ++ L+ + T+E L ++ Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + + ++++V + +LR K+ A + TV G GY Sbjct: 183 RHQADTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGYR 221 >gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 234 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54 RILL+ED++ + L+ + ++V + G +EL + D ++LDL L Sbjct: 3 RILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDLML 62 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EV R +R + PV +L+ S DK+ GL+ GADDY++KP++ ELVAR+ A Sbjct: 63 PRLSGTEVCRRIR-RSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHA 121 Query: 115 IVRRSRGHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++RR+R + G +S++++ V V G I + +E++++EL + LT+ Sbjct: 122 VLRRTREEEPAEPVLEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRG 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ + K +DV + ++R K+ + TV G GY L Sbjct: 182 QIIDRVWGAGYVGDTKTLDVHVKRIRAKIEREPSDPTLLVTVRGLGYKLVSEG 234 >gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] Length = 232 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGGGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHP-MIHTVRGAGYVIRADEP 229 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E + G D + + D +ILD+ + + G E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L LR PV L+ ++ D+V+GL++GADDY++KPF+ +E+ AR+ ++RR+ Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +++ DL++++D+ V G I LT E++++ L L+K+ L+ + Sbjct: 132 TQQAASTVLQVADLTLDVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +V +++++I LRKK+ A I TV G GY++RE Sbjct: 192 WSYDFGGQVNVVELYISYLRKKI--DADRPALIRTVRGAGYIMREP 235 >gi|126650075|ref|ZP_01722308.1| DNA-binding response regulator [Bacillus sp. B14905] gi|126593247|gb|EAZ87209.1| DNA-binding response regulator [Bacillus sp. B14905] Length = 235 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ +L++ED+ +A+ I+ L F+ ++ G + I + D +ILDL L D Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+ R +R + + ILS S DKV GL GADDY++KPF+ ELVARI A +R Sbjct: 61 DGIEICRKIR-EHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLR 119 Query: 118 RSRGHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R Q ++ +N I L+ KE++++ L+ +N +K Sbjct: 120 RQDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ + I V+I ++R+K+ Y++TVWG GY Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >gi|77459613|ref|YP_349120.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383616|gb|ABA75129.1| two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD+ LA I L+ + V G+ + ++ ++LDL L G Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + TP+ IL+ D + GL+SGADDY+ KP L+AR+RA+ RR Sbjct: 68 VCREIR-SVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVP 126 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+L ++ + V + G I LT E++++ LL+ L+++ LN + Sbjct: 127 DSGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNRMR 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +DV+I KLR KL + I+TVWG+GY+ A + Sbjct: 187 GIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNPFAWE 234 >gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] Length = 230 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L+SE F V G++ + L + D I+LD L + G EV Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + S P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R+ R Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 129 PSSVGLTLEFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L GG++ + TV G GY L Sbjct: 189 GRDIYVDSRTVDVHVGRLRKALCLH-GGEDPVRTVRGAGYAL 229 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+ F V G + + + D I+LD+ L D+ GFE Sbjct: 9 RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 ++R LR TPV L+ + EDKVRGL G DDY++KPF+ +E++ARIRA++RR Sbjct: 69 IVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTAG 128 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + D+ ++ ++ V G I L+ E++++ L L L+K L+H+ Sbjct: 129 DPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDHV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ ++ LR+K+ I T+ G GYV+R Sbjct: 189 W--DHVRGEGIVESYVSALRRKIDKD--RPRLIHTIRGVGYVMR 228 >gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L+ F V G DG+ L + I+D+ L + G Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +V+ LR KI TP+ ILS S+ED+VRGL++G DDY+SKPF+ EL+AR++A I R + Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+LS+NL + V + L +E+ ++E L+K M + H++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV +C+LR K+ + + T+ G GYVL+E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRD-YDRKMLHTLRGVGYVLKE 223 >gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 224 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +AH ++L L + V G G+ + D +ILDLGL D+ G E Sbjct: 3 RILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGLPDLDGGE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A P+ +L+ ++E KV L GADDYI KPF+ EL+ARI+ +R Sbjct: 63 VARRIR-AGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQLR--HR 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I G L V+L + V +G + L+ KE++++ LL R +++ HL+ Sbjct: 120 EGGEQISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + E + ++DV I LR KL A Y+ TV G GY LR+ + Sbjct: 180 QLERDSNVVDVHIANLRAKLREAGAY-GYLRTVRGVGYALRQREAE 224 >gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 219 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++EDD+ L + L+ + V GE+G L +DA+ILDLGL + G VL Sbjct: 2 LIVEDDRDLNRQLCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGLPQMDGLSVL 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R S PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ G A Sbjct: 62 ERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGLA 121 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + I GD+ ++ A V G + LT E++++ L K +++ + HLYD Sbjct: 122 SNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQDF 181 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK ++ IETV G GY L+E Sbjct: 182 DRDSNTIEVFVGRLRKKFGSS-----LIETVRGLGYRLQEE 217 >gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 231 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A+ + + G +G + ++D +I+D L + G Sbjct: 5 MRILIVEDDSEAANYMAKAFREAGHVADHVGDGLEGYARAREEDYDVLIVDRMLPKLDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR K+ TPV ILS + ++D+V+GL++G DDY+SKP+ EL+AR+ + RR + Sbjct: 65 SLIGGLRAQKVETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILARRKQ 124 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ G L ++ A V +G I L +E++++E L +T+ M L ++ Sbjct: 125 NGTGEETVYRVGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLLENV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D +P+ +IDV I +LR K+ + ++T+ G GY++R+ ++ Sbjct: 185 WDYHFDPQTNVIDVHISRLRSKI-DKGFEPPLLQTIRGAGYMIRDGSR 231 >gi|49475273|ref|YP_033314.1| two-component response regulator [Bartonella henselae str. Houston-1] gi|49238079|emb|CAF27286.1| Two-component response regulator [Bartonella henselae str. Houston-1] Length = 228 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD +E + +V V GE G L + +D +++D L G Sbjct: 1 MKILVIEDDHETGRYLEKAFEEAGHSVDVAYDGETGYALAETENYDVMVVDRMLLHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TP ILS + + D+V GL++G DDY++KP+ EL+AR+ R++ Sbjct: 61 SIIAELRAKGNETPALILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ G+L ++ A TV+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV I +LR K+ + T+ G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLYTIRGAGYMLKAP 224 >gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 229 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLGSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074] gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GE+G+ L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 SNDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 224 >gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra [Mycobacterium intracellulare ATCC 13950] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++DD + S+E L+ F V G + + DAI+LD+ + + G V+ Sbjct: 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120 ALR PVC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR Sbjct: 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G L V++ + V G + LT +E+ ++ +L+ K L++ L ++ Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DVFI LR+KL A GG + TV G G+VLR Sbjct: 181 YDFAADTNVVDVFIGYLRRKLE-AHGGPRLLHTVRGVGFVLR 221 >gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 5/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + L+ F V+ G ++L E D ++LD+ L D+ GF + Sbjct: 9 LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGFTI 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV L+ S++DKV+GL G DDY++KPF+ EE+VARIRAI+RRS Sbjct: 69 TRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSHAE 128 Query: 123 AQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ +L D V G I ++ E+ ++ L + L+K L+H+ Sbjct: 129 DQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILDHV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D E+ I++ +I LR+K+ + G I T G GYVLR + Sbjct: 189 WDYDFRGEMGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLRLPPE 235 >gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] Length = 230 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V V + GE G+ EFD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQIRGQKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V G T KE+ ++ L+ N +KE Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 231 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++IED+ +A+ + LKS ++ +V G+ G++L + D ++LDL L + G + Sbjct: 4 KIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTD 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V +A++ P+ +L+ D++ G + GADDY+ KPF+ EL+ RI+ ++RR+ Sbjct: 64 VCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRN 123 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ + +A T+ V G HLT E+ + + L++E L++ Sbjct: 124 VNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLSN 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +D + +LRKKL A +++ETV G GY ++ Sbjct: 184 AWGYEFEGYSRTVDTHVRRLRKKLGPYA---DWLETVRGIGYRMK 225 >gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755] gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755] Length = 231 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 114/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A + L++E F V G + + D +LD+ L DI GF+ Sbjct: 4 KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV +L+ DK+ GL GADDY++KPFN E+VAR++ +RR + Sbjct: 64 LLQTIR-KTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 HAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS + +++ + G + LT E++++ L + + + E Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCYLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+KL+ I+TVWG GY++ + Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326] gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326] Length = 239 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125 Query: 122 HAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSSAESVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ + V V + G G+ + D ILD+ L GFE Sbjct: 12 KILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIMLPGTDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 72 ICKQVR-EVKDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLARYDR 130 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++I + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 131 LVSNSKNNNNIIEIRGIKIDKTARRVFVNGEEKPFTTKEFDLLTFLAENPNHVFTKEELF 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 191 KEIWDMDSIGDIATVTVHIKKIREKIELDTSKPQYIETIWGVGYRFK 237 >gi|229118514|ref|ZP_04247867.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664895|gb|EEL20384.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 231 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I L ++ FNV TD GE +EL + D +ILD+ L I GF V Sbjct: 4 ILVLEDDITIRSFITLNMQRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDGFRV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + IL+ + +D+V GL GADDYI KPF+ ELVAR+++++RR + + Sbjct: 64 CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L I +G +NL + I LT E+ ++ L +++ LN ++ Sbjct: 124 KKELELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K+IDV I +LR+K+ + ++ TV G+GY EN Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227 >gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 226 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S L++ F V G+ L +D ++LD+ L D GF Sbjct: 1 MRVLLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPDDDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ALR + V + + ++ED++ GL GADDY+ KP+ ELVAR+RA++RR Sbjct: 61 VLCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L+ DL ++ + G I LT KE+ ++E+L LT+E H +D Sbjct: 121 HAAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +P +IDV+I +LR+K+ + TV G GY L ++ Sbjct: 181 DNFDPMSNVIDVYIARLRRKVDADGDVP-LLSTVRGAGYRLAVPSR 225 >gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271] gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271] Length = 232 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRIL+ +DD+ + + + L +E ++V G + K +E IILD+ + + Sbjct: 1 MRILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VL LR A TPV +LS SS +DK++GL SGADDY++KPFN E++AR+++I+R Sbjct: 61 DGMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILR 120 Query: 118 RSRGHA-----QSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R + +I G L + + V + I LT E+ ++ LL+ N + Sbjct: 121 RQSTYQKEVAEPDVIEIGPLIIRRASHEVKTLTDKDIQLTALEFGILYLLASHPNQVFSA 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 181 EEIFEAVWNQESIVSAKTVMVHVSHLRDKIEAATEGERVIQTVWGVGYKIE 231 >gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + + ML+ + + + + L K + I+LD + G Sbjct: 3 MRVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGSGI 62 Query: 61 EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 + ++ ++ + P+ +L+ EDKVRGL+ GADDYI+KPF+ +EL ARI+A + R Sbjct: 63 QFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRR 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I L ++ + V + + E++++ ++E LN+ Sbjct: 123 SAPTATEEVIDVQGLRLDPVSHRVTANDLPLDMGPTEFRLLHFFMTHPERVYSREQLLNN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I +LRK + G I+TV G GY Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKAM-AVTGHDVLIQTVRGSGYRF 225 >gi|197302214|ref|ZP_03167273.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC 29176] gi|197298645|gb|EDY33186.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC 29176] Length = 236 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYA 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADQHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|167766709|ref|ZP_02438762.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1] gi|167711463|gb|EDS22042.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1] Length = 240 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + +I+ L+ E++ + G + +++ E +I+D+ + + G Sbjct: 10 KILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVMMPKMDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ ILS + DK+ GL GADDYISKPF +ELVAR+++ +RR Sbjct: 70 ATMKIR-ESKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 128 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 I+ G L +++ K + V G + LT EY+++ LL + + Sbjct: 129 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ A Y++ VWG GY + + Sbjct: 189 IYERVWNEEAYATENTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIEK 238 >gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa PAO1] gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa LESB58] gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719] gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192] gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa PAO1] gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719] gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192] gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa LESB58] Length = 226 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + I TV G GYVL E + Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEERDE 226 >gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 222 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ F V GE + ++A +LDLGL G Sbjct: 1 MRILLAEDDSLLGDGLRAGLRQLGFQVDWVRDGEAAERELRAQPYEAAVLDLGLPRKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A+R + + TPV +L+ ++ +++RGL +GADDY+ KP + EL AR+RA+VRR+ Sbjct: 61 DVLAAVRRSGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + D+ ++ ++TV G + L+ +E+ +++ L + L++E LY Sbjct: 121 GQPQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E I+V I LR+KL I TV G GY+L++ Sbjct: 181 WGQEVESNAIEVHIHNLRRKLG-----PALIHTVRGVGYMLQK 218 >gi|186684290|ref|YP_001867486.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466742|gb|ACC82543.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 239 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 113/232 (48%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L + + + G+ + + + + +ILD L D+ G+ Sbjct: 10 KILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNLPDVNGYS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + + ++ + V IL+ + DK++ L +GADD+++KPF+ E+ RI A +R Sbjct: 69 LCQEM-QSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIRY 127 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I+ L +N + + V + + LT E+ ++ L+ N ++ + + Sbjct: 128 INPSPTQRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQLIQKI 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + +++DV I +LRKK+ +I+TV G GY ++ T Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFEAPDENTTS 239 >gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ V Sbjct: 1 MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIMLPGLNGYRVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRSRG 121 ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARI+A R Sbjct: 61 AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGVGA 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + V GDL V+ A+ V + I LT KE+ ++E L LR ++K L H++D Sbjct: 121 GASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWDF 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + I++V++ LR+KL I TV G GY L + Sbjct: 181 AYEGDPNIVEVYVSTLRRKLRA-----GLIRTVRGAGYRLEAS 218 >gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora CFBP1430] gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora CFBP1430] gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC BAA-2158] Length = 251 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L L E + V G + ++ ++LDLGL D G Sbjct: 33 MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 92 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + PV ILS ++ D+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 93 DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ GD+++NL ++ V V + +T KE+ ++ L +R T+ +E LY Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D+ ++V + LR+KL I+TV G GY L E Sbjct: 213 WQDDTSSNTLEVHMHNLRRKLGKD-----RIKTVRGVGYRLEE 250 >gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] Length = 233 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L+++D+K +A +E+ L S+ + V+ ++ + + K E ++LD+ + + G Sbjct: 4 INVLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +LS S+ DK+ GL GADDY++KPFN EL AR+++ +RR Sbjct: 64 ELCRKIR-ESSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYT 122 Query: 121 GHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I ++++N D V ++G + LT E++++ LL+ + + Sbjct: 123 QLNPNSTNEFAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTD 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +LR K+ I TVWG GY + + Sbjct: 183 EIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDQRENKIITTVWGVGYKIEK 233 >gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202] gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202] Length = 221 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + I+L L +NF V G+ G + E+DA+ILDL L + G Sbjct: 1 MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTDGKLGFDALFSAEYDAVILDLSLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ ++++++ G +GADDY+ KPF E+V R++A++RRS Sbjct: 61 DILKQWRKENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S IV GDL ++ + V + G I LT KE++++EL + K+ L + + LY Sbjct: 121 QQVSSEIVIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL + +++TV G GY L Sbjct: 181 WDNEVSSNALEVYIHNLRKKLGKS-----WVKTVHGVGYKL 216 >gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGEKAKH---IGTVIRVGYKFEE 225 >gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803] gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED++ L + ++E F V + G+ +EL +E D I+LD+ L +I G+ V Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEIDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S +D + G + GAD+Y++KPF+ + LVAR + +++R+ G Sbjct: 65 CRRIRKESAV-PIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + + VN ++TV V G I LT KE++++ L K L+++ L+ L Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I KLR KL + A I TV GY E Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKAKH---IGTVIRVGYKFEE 225 >gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 242 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD L + L + + V + G+ +F D ++LDL + G + Sbjct: 7 IWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLMMPGDDGLTI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LR LR PV +L+ D++ GL+ GADDY++KPF EL ARI A++RR Sbjct: 67 LRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVLRRRGAV 126 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I G+ S++L A+T+E G + +T E+ ++ + L++E + Sbjct: 127 PAGTPVADGEVIGFGNNSLDLSARTLERDGEPVVITSGEFGLLAAFVQNPHRPLSRERLI 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + + +DV + ++RK + Y++TVWG GYV + + Sbjct: 187 ELARGPSSETDSRSMDVQVSRVRKLIEPDPSRPRYLQTVWGYGYVFVPDGE 237 >gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 220 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I L E + V G + FD +LDLGL + G Sbjct: 1 MRLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ LI +S+N + V G + LT KEYQ++ L +T++ LY Sbjct: 121 GRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPGRVMTRDHLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E ++V I LRKK S I T+ G GY++ E Sbjct: 181 WNEEAESNTLEVHIHHLRKKFSTD-----LIRTIRGVGYLVEE 218 >gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01] gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222] gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01] gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222] gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] Length = 229 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SAGHDKLIQTVRGAGYRF 225 >gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 228 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+L +D+ + +EL L +E + V + G ++L + + +LD+ + ++ GFE Sbjct: 8 KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPEMNGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++L+ + + V +L+ ++D+V+GL+ GADDY+ KPF+ EL+ARI A +R Sbjct: 68 VCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLRNQFP 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +V G V+ K + Q + L+ EY++++ L L L+K L+ ++ Sbjct: 128 DLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL + I T+ G GY Sbjct: 188 DFGGEDNIVEVYIRSLREKLKD--KEHRVIRTLRGVGYR 224 >gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + ++L + E F V V G+ + + D +ILD+ L G Sbjct: 6 KVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R+LR P+ +L+ D+V GL+ GADDYISKPF+ ELVARI+A++RR++ Sbjct: 66 LCRSLR-EIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRTQA 124 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ D + V V I LT +E+ ++ L+ T++ L + Sbjct: 125 VEGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLAAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + +DV I +LR KL + Y+ TVWG GY K+ Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKL--VSLQHEYLSTVWGVGYQFTPPVKE 231 >gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 245 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 8/243 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+ + + L+ ++ + G G L D I+LDL L + GF Sbjct: 3 RILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR PV +L+ + ++KV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILSYGPLTLVPERFEAIWLDKTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE-TCEYL 233 L ++ +++ I V + LR KL YI+TV+G GY L A+ E Sbjct: 183 LKEVWGYDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPAEATLKPEQA 242 Query: 234 ETA 236 TA Sbjct: 243 ATA 245 >gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 223 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGATLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130] gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130] Length = 216 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + L+ ++ V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILVVEDDRDLNRQLVSALEEASYVVDSASDGEEGHFLGDTEPYDAVILDVGLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R S PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLEKWRRGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ + I G + ++ V + G + LT E++++ L K +++ + HLYD Sbjct: 121 GHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + I+VF+ +LRKKL + IETV G GY Sbjct: 181 QDFDKDSNTIEVFVGRLRKKL-----HSDVIETVRGLGYR 215 >gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC 27755] gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDDK + +E+ LKS+ + V+ G +G+E+ + E I+D+ + + G + Sbjct: 5 HVLIVEDDKEIREGVEIYLKSQGYVVFQAADGVEGLEVIEKEEIHLAIVDVMMPRMDGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTVKLR-EKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRRYRR 123 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q++ V G L ++ + V V G + +T EY+++ LL + + Sbjct: 124 FMEKLGDKEKTQNIHVIGGLELDEERVEVRVDGELVKVTPMEYKILLLLMKNPGRVFSAD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ R I V + +R+K+ Y++ VWG GY + + A Sbjct: 184 EIYERVWNERA-VNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235 >gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035] gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035] Length = 223 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E +V + G D + +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR A TPV L+ + S++++V GL +GADDY+ KPF EL AR+ A R Sbjct: 61 TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ G L ++L A+ V +G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 ALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ I +LR K+ + I+TV G GY + Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFTTELIKTVRGAGYRI 221 >gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 233 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ALA I L+ ++V V G+ E + D +ILDL L + G +V Sbjct: 4 ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RR Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLG 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L +TV + + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV I KLR+K + AG I+TVWG+GY+ + + Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWE 232 >gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 236 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA ++ L+ ++ + + GE+ + L D ++LD+ L I GFEV Sbjct: 6 ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 R LR ++ P+ +L+ DKV G + G DDY+ KPF+ EL RIRA R Sbjct: 66 CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + ++V L V++ +V++ G I LT E++++ +L R+ ++E L+ Sbjct: 126 RGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ID I +LR+KL YI+TV G GY L E+ + Sbjct: 186 VWDVDKTINTRTIDTHITRLREKLGETG---KYIKTVRGLGYKLEESGE 231 >gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 227 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G + E+D ++LD+ L G+ Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+RR + Sbjct: 61 TLLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 PRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220 >gi|320532177|ref|ZP_08033046.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135603|gb|EFW27682.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 238 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 +D+ L+ +++ L+ + G ++L + D ++LDLGL + G EV R L Sbjct: 16 DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEVCRQL 75 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ-- 124 R V +L+ + DK+ GL GADDY++KPF+ ELVARI+ ++RR R + Sbjct: 76 RTFSDCY-VLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTGA 134 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L+++ ++ VE+ + LT E+ +++ L+ L + + ++ Sbjct: 135 TAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWGE 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV I LRKKL + +++TV G GY + Sbjct: 195 DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234 >gi|300856180|ref|YP_003781164.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436295|gb|ADK16062.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 242 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D++ + IE +L E F N+ G DG+++C+ D ++LD+ L DI G Sbjct: 10 KILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGVKICQSERTDIVVLDIMLPDIDGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ LS +S DK+ GL G DDYI+KPF+ E+ RI+A +RR + Sbjct: 70 EVCKRIR-QFSYCPILFLSAKNSDVDKIVGLSMGGDDYITKPFSPREIAFRIKAQLRRQQ 128 Query: 121 GH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I+ G ++++ V G + LT KEY+++ L+ N + KE Sbjct: 129 YDGIKEVKSSENENIIIGSITIDKLHSQVYKDGSEVKLTAKEYKLLLYLAENSNKIVNKE 188 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ I V I LR+KL I TV G GY L + + Sbjct: 189 RLCEVVWGDDYFGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKLVKRNE 242 >gi|320093788|ref|ZP_08025635.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979289|gb|EFW10785.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 238 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 6/220 (2%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 +D+ L+ +++ L+ + G ++L + D ++LDLGL + G EV R L Sbjct: 16 DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEVCRQL 75 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ-- 124 R V +L+ + DK+ GL GADDY++KPF+ ELVARI+ ++RR R + Sbjct: 76 RTFSDCY-VLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTGA 134 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L+++ ++ VE+ + LT E+ +++ L+ L + + ++ Sbjct: 135 TAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWGE 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV I LRKKL + +++TV G GY + Sbjct: 195 DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234 >gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ [Xenorhabdus nematophila ATCC 19061] gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 239 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L IILDL L G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ ++S D++ GL+ GADDY+SKPFN EL+AR+RA++RR Sbjct: 66 VCRRLRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRRQTH 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G ++L + + ++ LT E+ ++++L L+++ Sbjct: 126 ELPGAPTSDDTVVKFGKFKLDLGTREMFHHDEQLSLTSGEFSVLKVLVSYPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV + +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYGAMERSIDVQVSRLRRLIEEDPAQPRYIQTVWGLGYVFIPDG 236 >gi|241666669|ref|YP_002984753.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862126|gb|ACS59791.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 230 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V + D I+LDLGL D G + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVREAPNAAAARQSVADDMPDLIVLDLGLPDTSGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQVWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V+G I L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVEGAEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V++ +LR+K+ +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLREP 229 >gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 223 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD I+LD+ L + GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 244 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A ++ L++ F+V G + + D ++LDL L + G E Sbjct: 3 RVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLMLPGLDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L A+ PV +L+ + D++ GL+ GADDY++KPF+ EL R+R+++RR+ Sbjct: 63 VFRRL-TARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVLRRAAE 121 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + G L V+ A+T + LT +E+ ++ L R T+ L Sbjct: 122 AAAAPEPGVLRAGALVVDPAARTATRHEVPLGLTVREFDLLAFLLRRPGHAFTRVELLEQ 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + + V I +LR+K+ + + TVWG GY Sbjct: 182 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRLLVTVWGVGYR 223 >gi|311899558|dbj|BAJ31966.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 245 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 4/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 R+L+++DD A+ S+E L+ F V V G + D ++LD+G+ + Sbjct: 4 RVLVVDDDAAIRRSLERGLRLSGFRVEVAADGAQALSRLAGDAPDPPDVLVLDVGMPGLS 63 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V R LR TPV +LS + + D+V GLQ+GADDY+ KPF EELV R+ A++RR Sbjct: 64 GTDVCRTLRARADDTPVLMLSALDELADRVAGLQAGADDYLVKPFALEELVLRLHALLRR 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI G L ++ + + + + LT +E++++ L+ L++E+ L+ + Sbjct: 124 RPPQPTDLIRVGPLRIHPETRQAFWEEDELRLTRREFELLAQLARNAGLVLSREVLLDRV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E +D F+ LR+KL A G + TV G G+VLR D T Sbjct: 184 WGYDFEVRSDAVDTFVSYLRRKLE-AGGRPRTVHTVRGVGFVLRAPNTDST 233 >gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] Length = 225 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE L+ VYV G G EL + +F +ILD+ + + G + Sbjct: 3 KILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + + R PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A+ R Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + G I LT KEY+++E + T L++ L +++ Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + ++DV++ LR K+ I TV G GY++ Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDF-EPKLIHTVVGVGYMME 224 >gi|254293636|ref|YP_003059659.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042167|gb|ACT58962.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 223 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L ++ L + V + GEDG L + +DA+ILDLGL + G Sbjct: 1 MRLLVVEDDPDLGRQLKTSLSEAGYAVDLAVDGEDGHYLGETEPYDAVILDLGLPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ +KV G +GADDY++KPF EEL+AR+RA++RRS Sbjct: 61 RVLEKWRAEGKVMPVLILTARDRWSEKVAGFDAGADDYLTKPFITEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + GDL V+ + V G I LT EY+++ + + + + + H+YD Sbjct: 121 GHASSALELGDLRVDTSSARATVGGQPIKLTAHEYRVLSYMMHYQGRVVPRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKK+ + I T G GY L + A +E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGSD-----RILTERGLGYRLVDPAANE 223 >gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 226 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + I TV G GYVL E + Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEERDE 226 >gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] Length = 224 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + + + + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 GVLQRLRAESSTRIMML-TAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QHLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFEDKLIHTLRGVGYVLE 221 >gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDDK +A L+ F + GEDG+ EFD I+LDL L GF+ Sbjct: 3 KILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSKDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 + + +R + P+ +++ DK++G GADDYI KPF+ ELVAR+ A R Sbjct: 63 LCKEIR-SNKEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSRYDR 121 Query: 118 RSRGHAQSLIVTGDLSVNL-----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + I G + + V V + L KE++++ L+ N +K Sbjct: 122 LTSMGKKDNINNGVMVFKRLKILKRERRVYVADKEVKLANKEFELLLFLATNSNIVFSKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ ++ +V + V I ++R K+ + +IETVWG GY + Sbjct: 182 ILLDRIWGMDSFADVATVTVHINRIRDKIEEDSSNPQFIETVWGAGYRFK 231 >gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 241 Score = 174 bits (441), Expect = 8e-42, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L ++D +++D L G Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR TP ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 76 SVIGTLREKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V G + L +E++++E L +T+ M L +++ Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 196 DYHFDPQTNVIDVHISRLRAKIDKGFDRP-LLHTIRGAGYMIRD 238 >gi|168184909|ref|ZP_02619573.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182672016|gb|EDT83977.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 233 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L+++D+K + +IE+ L+S EN N+ G D +++ + E IILD+ + Sbjct: 1 MRTYNVLVVDDEKEIRDAIEIYLRSIENTNIIKAADGLDALDVLENNEIHVIILDIMMPK 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G +R K + P+ +LS + DK+ GL GADDY++KPFN ELVAR+ + + Sbjct: 61 LDGIRTCMKIR-EKNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQL 119 Query: 117 RRSRGHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR I L +N + V V G ++ LT EY ++ LL+ Sbjct: 120 RRYTNLGNFPKTADVDEIYIDQLFINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +LRKK+ YI+ +WG GY + + Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233 >gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC 4571] gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC 4571] gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] Length = 228 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A GG++ I+TVWG GY + Sbjct: 180 FERVWQQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 222 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 114/223 (51%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ ED+ +A IE LKS F + L EFD +ILDLGL D G E Sbjct: 3 HILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGLPDRDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR P+ IL+ I+DK+ GL+ GADDY++KPF EEL+AR+R +R + Sbjct: 63 VLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTNIH 122 Query: 122 HAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S +T +L A+ +V I L +E+ + E L+++ L+ + Sbjct: 123 QSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P I+DV++ LRKKL + I+TV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGDD-----LIQTVRGVGYRL 220 >gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ LA + L+ E + + G +G+ D IILDL L + G EV Sbjct: 4 ILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLGTEV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ ++ + PV +L+ DKV G + GADDY+ KPF+ EL R++A++RRS Sbjct: 64 CKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRRSN 123 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + G ++++ D V V G I T E++++ +L+ R ++++ L + Sbjct: 124 TETVSSTMIELGPITIDTDRHQVMVNGEEIFFTSTEFKLLHVLAQRLGRVQSRDVLLRDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I +LR K+ A + I+TV G GY L Sbjct: 184 WGYNFVDDSRTVDTHITRLRTKMGAAG---DLIKTVRGFGYKLE 224 >gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 233 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ + V V G+ E K D +ILDL L + G +V Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RR Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L +TV + + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV I KLR+K + AG I+TVWG+GY+ + + Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWE 232 >gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] Length = 231 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 9/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K LA + L + V V G +G+ + +D I+LD+ L + GF Sbjct: 1 MKVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR K PV +LS +ED+VRGL+ GADDY+ KPF+ EL+ARI A+ RR+ Sbjct: 61 QLLRELR-KKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRND 119 Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + T + V +L + V I LT KE+ +++L + L+++ Sbjct: 120 PANLAEAHTNIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTLA 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++D +++ + +LR K+ + I TV G GYV+ A+D+ C Sbjct: 180 EQVWDINFNNNTNVVEAAVRRLRAKV-DGPFESKLIHTVRGMGYVIE--ARDQEC 231 >gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 226 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +T V +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 183 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLRVES 226 >gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 263 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + ++ L++E F V G +E + ++ D ++LD+ L G E Sbjct: 38 RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A PV +L+ D + GL GADDY++KPF+ E+ AR+ ++RR Sbjct: 98 VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 156 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L V+ + V V+G +HLT E+ ++ L+ L++E Sbjct: 157 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 216 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 217 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPAP 263 >gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 218 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 136/220 (61%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD +LA +++ +L+ E ++V + G G EL EFD I+LDL L + G Sbjct: 1 MRLLLIEDDASLAKALKEVLEKEGYHVSLALDGRRGYELALCEEFDLIVLDLLLPSMGGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LR + + TPV L+ +S + KV GADDY++KPF+ EEL+AR+RAI+RRS Sbjct: 61 EVLKSLRESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G++ + ++ K V V G + LT EY ++E L L + +++E + Sbjct: 121 GSTSDIMELGEVRIEMNKKRVLVNGQEVPLTATEYTVLEYLCLNRGRYVSREEIIERCLS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R EPE ++VFI ++RKKL G K++I++ G GY Sbjct: 181 YRYEPESNTVEVFISRIRKKL----GIKDFIKSSRGFGYR 216 >gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ANDAATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221 >gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + LK+ F + T G + +EL FD IILD+GL DI GFEV Sbjct: 4 ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGLPDIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR ++ PV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R Sbjct: 64 LQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEAAG 123 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+ ++L +T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 124 ADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL +ETV G GY L Sbjct: 184 DFDPGSNVVEVYVSYLRNKLGRD-----RVETVRGMGYRL 218 >gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 232 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + LK + G+ ++L D IILDL L + G+E Sbjct: 5 RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 V R L+ K + P+ +L+ D V GL+ GADDY+ KPF+ ELVAR+ + R Sbjct: 65 VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRRT 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I GDL ++++ + V ++G+ + L+ E++++ELL+ R T++++ L + Sbjct: 125 RMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGRI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +DV I +LRKKL + I+T+ GRGY + Sbjct: 185 WNL-YGGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRI 226 >gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 225 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 TVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G ++ LT EY+++ L +++ HLYD Sbjct: 121 GHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLVDPN 219 >gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 228 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 2/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L + + V + G G++ + D +ILDLGL D+ G E Sbjct: 3 RILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDGQE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 ++ A+R P+ +LS + DKV L GA+DY++KPF EL+AR+RA++R Sbjct: 63 IISAVR-QDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLRPHLP 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +G L ++LD V G IHL+ KE+ ++ + + LT + L ++ Sbjct: 122 KEGGQVVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + V++ +LR+KL + I T G GY LR + + Sbjct: 182 PAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRLRSDPQ 227 >gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 244 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +A I+ L+ ++F+V + G +E+ K ++ DA ILD+ + + GF Sbjct: 19 RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR A PV L+ +++D++ GL GADDY++KPF EE++ R+R I+RR + Sbjct: 79 VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQP 138 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I DL+++ D V G + L+ E++++ L + ++K L+ + Sbjct: 139 EEKEDESLITYADLTLSDDMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++ ++ LR+K+ + I TV G GYVLR Sbjct: 199 WEYDFGGDGNVVESYVSYLRRKI--DTQEPHLIHTVRGVGYVLR 240 >gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] Length = 229 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A +E + + V T G +G+ L ++DA++LD L + G Sbjct: 4 KILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRMLPGLDGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+A+R A + TPV ILS M +++++VRGL++G+DDY+ KPF EL ARI A++RRS Sbjct: 64 VLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSAA 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +V DL ++L ++ V G I L +E+QM+E L +T+ M L + Sbjct: 124 GTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV I +LR+K+ I TV G GY+L Sbjct: 184 WNYHFDPQTNVIDVHISRLRQKVDKDFDSP-LIHTVRGSGYML 225 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A I L+ F V V G DG + +D ++LD+ L D+ G+ Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++++LR A PV L+ S++D+V+GL+ GAD Y+ KPF EL+A +R + RR+ Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + +IDV I +LR K+ + I TV G GY L Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKM-DEPYEPKLIHTVRGMGYTL 221 >gi|118618059|ref|YP_906391.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium ulcerans Agy99] gi|118570169|gb|ABL04920.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium ulcerans Agy99] Length = 228 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVDIDVPAHKATRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 223 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 138/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ L+ DL ++L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|119716238|ref|YP_923203.1| response regulator receiver [Nocardioides sp. JS614] gi|119536899|gb|ABL81516.1| response regulator receiver [Nocardioides sp. JS614] Length = 223 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A + L+++ G +G++L + D ++LD+GL + GFE Sbjct: 3 RILIVEDEERIASFLAKGLRADGHVTTCVADGREGLDLALGGDVDLVVLDIGLPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV +L+ S+ D V L+ GADDY+ KPF EL+AR+R +R+S Sbjct: 63 VLDQLRSQGSTVPVIVLTARDSVGDTVSALEGGADDYMPKPFRFAELLARVRLRLRQSAD 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ +G + +++ + V+ ++ L+ +E+ + E+ + L++E L+H Sbjct: 123 AGGASREDVLQSGRVKLDVRTRRAVVEDRQVDLSAREFSLAEIFMVNAGQVLSREQLLDH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P ++DV++ LRKKL I TV G GY Sbjct: 183 VWGMDFDPGSNVVDVYVGYLRKKLGADT-----IATVRGMGYRF 221 >gi|327183273|gb|AEA31720.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 116/237 (48%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M+IL++EDD ++A + + K E + + G + +++ K ++D I LDL L Sbjct: 1 MKILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 61 GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 120 Query: 119 SRG----------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNT 167 I T L ++ + V I LT KE+ ++ ++ + Sbjct: 121 VMMEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVIDLTPKEFDLLYTMAQKPKQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 181 VFSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 235 >gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] Length = 224 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L ++I LK + V G D +E+ + +D I+LDL L ++ G Sbjct: 1 MKILIVEDEKILNNTINKSLKDAGYEVESAFDGFDAMEMIEIESYDLIVLDLNLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + T V ILS S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ Sbjct: 61 EILKNLRKEDVETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + + +T+ ++ + LT KE ++E L L + +++E ++H++D Sbjct: 121 IQNNTELSFDKIKFDSKNRTIFIEDKELKLTRKESGILEYLLLNQGRPVSQEELIDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL G + IE G GY+LR+ Sbjct: 181 SSVDLLSNSIRVHISALRKKLKQELGY-DPIENRIGIGYLLRK 222 >gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 223 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+K + ++L L + ++ + G I+ + + D ++LD+ + ++ G+E Sbjct: 4 ILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPELDGWET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +++ D V+GL+ GADDYI+KPF++ EL+ARI A++RRS G Sbjct: 64 CKRIR-EFSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVGK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G + D V Q I LT KE+ ++ L N ++E + L+ Sbjct: 123 HSKMEFQGL-VWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWGYN 181 Query: 183 DEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222 E + ID + +R+KL A +++TVWG GY Sbjct: 182 ANTEERTIDSHVKNIREKLRQAGFPIDQFLQTVWGVGYKWE 222 >gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] Length = 221 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++ + V V G +G+ FD ++LD+ + ++ GFE Sbjct: 5 HILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNLNGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R P+ +L+ + ED+++G G DDYI+KPF+ L+ R+ A+ R Sbjct: 65 VAKMIRSQSNI-PIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ ++ +++DA V V I LT KE+++++LL + LT+E + ++ Sbjct: 124 NNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IID I LRKKL+ YI+T+ G GY + E Sbjct: 184 YDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKVDE 221 >gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 226 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD A +L+ + V+ + ++L + + D I+LD+ + I GF Sbjct: 1 MNILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVMMPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R P+ LS ++D+V GLQ G DDY+ KPF EL+AR+ A++RR Sbjct: 61 EVCRQIR-RNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119 Query: 121 G---HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + G+++++ V G + LT E++++ L L L+ Sbjct: 120 ADVLNTSTRLSQGNITLDPVEHKVLFTDGRVVELTPLEFRLLYYLMKNSGRILNVTQILS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E E ++ V+I +LR K+ ++ TV GY Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKVEEDPDHPRHVITVRNLGYKFEP 226 >gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 248 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD ++ + L + ++V D G+ + + D I+LD+GL DI GF V Sbjct: 15 VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TPV L+ + +ED++ GL SG DDY++KPF+ +E++ RIRAI+RRS Sbjct: 75 TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL ++ V G I L+ E++++ L + + K+ L+ Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +I+D ++ LR+K+ I+TV G GY L Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKI--DRFEPQLIQTVRGVGYCL 236 >gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 228 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED+K + ++L L+ E ++V GE+G+E K +D I+LDL + + G Sbjct: 1 MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R + P+ +L+ I +KV L GADDY++KPF EEL ARIR +R Sbjct: 61 EEVCKIIR-KTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNK 119 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L +NL + I LT EY + L L K +++E LN + Sbjct: 120 SNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E KI+DV+I LRKK+ +I TV G GYVL++ + Sbjct: 180 WGYDYMGEEKIVDVYINALRKKI--DYDENKFIHTVRGFGYVLKKES 224 >gi|238922420|ref|YP_002935934.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238874092|gb|ACR73800.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 236 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ + T TK+ ++ ++ Sbjct: 137 NEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPDRTFTKQQLMDEVWGYE 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 197 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 232 >gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ LK+E V+ G D + L + ++ II+D+ + + G + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K + V G I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ + Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230 >gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] Length = 229 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + +L+ F + + I D ++LD L G + Sbjct: 4 KVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + + + P+ +L+ EDKVRGL+ GADDY++KPF+ +EL+ARI+A++RR Sbjct: 64 IAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V +G+ + + E++++ ++E L+H+ Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIGPL-GHDRLVQTVRGAGYRF 225 >gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195] gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 225 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD I + N+ G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L + L + V + G + L KE+Q+++ L N +++ + ++ Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824] gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018] Length = 229 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + + L +E + + G + I + +ILD+ L DI G E Sbjct: 3 KILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K++ P+ ILS DK++GL +GADDYI+KPFN+ E + R++ ++RR+ Sbjct: 63 VCRKIR-EKLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTYL 121 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G L++ TV + + I LT E+++++LL++ K + E Sbjct: 122 FDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEEI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I LR K+ G+ I TVWG GY + Sbjct: 182 FETVWKEKYFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGYKIE 229 >gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 227 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 67 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 126 ANDSAAFGSLLIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 227 >gi|298251741|ref|ZP_06975544.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546333|gb|EFH80201.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK I L LK+E+F G + + L + D IILD L + G + Sbjct: 4 KILVVDDDKKTVDLIRLSLKNEHFETLEAYDGIEALALTRSEAPDLIILDWMLPHVGGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ PV +L+ ++ +DK+ GL G DDY++KPF+ ELVAR+R ++RR+ Sbjct: 64 LCRIVRLESTI-PVIMLTAKATEDDKLLGLNLGVDDYLTKPFSLRELVARVRVVLRRTYR 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +N+ V + G I LT KE++++E ++E + + Sbjct: 123 SEERPATLHFSDLVINVQRHEVWLSGKAIRLTPKEFKLLETFVRNPGRIFSREELVERVC 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ID + LRKK+ + +YI+TV G GY LR Sbjct: 183 GSNYDGFDRAIDFHLGNLRKKIDTHSEQPSYIQTVHGVGYTLR 225 >gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 231 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I L +K FNV TD GE +EL + + D +ILD+ L I GF V Sbjct: 4 ILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGIDGFRV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + IL+ + +D+V GL GADDYI KPF+ ELVAR+++++RR + + Sbjct: 64 CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L I +G +NL + I LT E+ ++ L +++ LN ++ Sbjct: 124 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K+IDV I +LR+K+ + ++ TV G+GY EN Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227 >gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262] gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262] gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023] Length = 225 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F+V G +G ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + LR++ PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|311696838|gb|ADP99711.1| two-component response regulator [marine bacterium HP15] Length = 233 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ + + + + + D G+ G+E + D +ILDL L + G V Sbjct: 5 VLIIEDNPGIGELVRMQVSDLGMKPVLVDRGDTGLERFREGGVDLVILDLMLPGLDGLAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R +R PV +L+ S+ D+V GL+ GADDY++KPF+ EL ARI+A+ RR Sbjct: 65 CREIRACPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELAARIKALFRRVDAL 124 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I L ++ + V V + LT +E+ ++ + + ++ Sbjct: 125 SQAAPAGDQADEIEVDGLRIDPVRRRVFVDDREVDLTAREFDLLWHFASHRGRVFSRAQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ E ++ I +LR K+ Y++TVWG GY Sbjct: 185 LDSVWGYNHEGYEHTVNTHINRLRNKIEADPADPRYVQTVWGVGYRF 231 >gi|282864678|ref|ZP_06273733.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560617|gb|EFB66164.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 236 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 4/226 (1%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 + EDD A + L+ E V V G +E + E D ++LD+ + G +V+R Sbjct: 3 VAEDDAKQAELVRRYLEREGHAVTVVADGLAALEQARQGEPDLLVLDVMMPRADGLDVVR 62 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 LR V +L+ S+ +D + GL GADDY++KP++ EL+AR+R ++RR+R A Sbjct: 63 VLRSEGRELAVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRRDAD 122 Query: 125 SLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+V+ V V G RI T E++++ ++ T+E L L+ Sbjct: 123 RQDDPVVRVGALAVDPRRHEVAVDGVRITCTPGEFRLLAAMAAEPGRVFTREQLLAELHG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +DV I LRKK+ A + + TV+G GY L + AK Sbjct: 183 FDRYISSRTVDVHIMNLRKKIEQAPRRPDRLLTVFGVGYKLVDPAK 228 >gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio coralliilyticus ATCC BAA-450] gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio coralliilyticus ATCC BAA-450] Length = 239 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ G+ S+NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSSEESVVEFGEFSLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A] gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis] gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A] gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 240 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD+A+ + L+L++E F G +E+ + D I+LD+ L + G EV Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + P+ +L+ S D V GL++GADDY+ KPF EL+ARIRA R ++ Sbjct: 64 ARRIR-ATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPA 122 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + G + ++ T G ++LT E++++ +L+ Sbjct: 123 AEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ L +++ + + ++++V + +LR K+ + ++TV G GY + Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240 >gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] Length = 230 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + L D I+LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGIN 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ + PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRV 123 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I +LRK L G ++TV G GY A Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VEGHDRLVQTVRGAGYRFSVQA 229 >gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] Length = 248 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD+A+ + L+L++E F G +E+ + D I+LD+ L + G EV Sbjct: 12 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + P+ +L+ S D V GL++GADDY+ KPF EL+ARIRA R ++ Sbjct: 72 ARRIR-ATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPA 130 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + G + ++ T G ++LT E++++ +L+ Sbjct: 131 AEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 190 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ L +++ + + ++++V + +LR K+ + ++TV G GY + Sbjct: 191 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 248 >gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275] gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275] Length = 232 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D+ + + L++ + + G DG K + D I+LD L +I G E Sbjct: 7 KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISGIE 66 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ +R PV +L+ + +DKV GL+ GADDYI+KPF+ +EL+ARI +++RR Sbjct: 67 VLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRRY 126 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+L +NL V++ ++ LT KE+++++LL + L++ L+ Sbjct: 127 GMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNFLLD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I LRKKL A + YIET+ G GY + Sbjct: 187 EIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKI 231 >gi|254390598|ref|ZP_05005812.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812195|ref|ZP_06770838.1| Two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440649|ref|ZP_08215383.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704299|gb|EDY50111.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324794|gb|EFG06437.1| Two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 220 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A +E L++ F V G+ + FD I+LD+GL GF Sbjct: 3 RILIVEDEERIASFVEKGLRANGFTTTVVGDGDSAFDYAVTGGFDLIVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A++S PV IL+ S+ D V GL+ GADD+++KPF EEL+AR+R +R + Sbjct: 63 VLRQLREARVSVPVIILTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+LS++L + + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLRNGELSLDLRTRRARSGERTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL +ETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRKKLGA-----GRVETVRGMGYRL 218 >gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory protein [Synechococcus sp. PCC 7002] gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory protein [Synechococcus sp. PCC 7002] Length = 223 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL EDD+ LA + L+ E + + V G D + L + +D +I D + + Sbjct: 1 MKPHILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMPGLS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ LR + I TP+ +L+ I D+V GL +GADDY++KPF+ EEL+AR+ A +RR Sbjct: 61 GLDLCLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +R + DLS+N + V I LT KE+ ++ELL LT+E L + Sbjct: 121 ARREVVDQLEFEDLSLNGITREVYRDRQLIQLTAKEFDLLELLLRHPRQVLTREQILEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +I+V+I LR KL A K I TV GYVL+ Sbjct: 181 WGYDFMGESNVIEVYIRALRLKLE-ATNPKRLIHTVRSVGYVLK 223 >gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 227 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G + E+D ++LD+ L G+ Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+RR + Sbjct: 61 TLLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 PRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYDPKLIHTVRGMGYVLE 220 >gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] Length = 229 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii DSM 4541] gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii DSM 4541] Length = 239 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E + I+LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSQDDAVITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSYPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185] gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 225 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD I + N+ G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L + L + V + G + L KE+Q+++ L N +++ + ++ Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630] gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196] gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291] gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08] gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07] gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile] gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196] gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291] gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08] gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D+ + ++ L+ N+ V + G DG K + D I+LD L +I G E Sbjct: 4 KVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNISGIE 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR +R K + PV +L+ + DKV GL+ GADDYI+KPF+ +EL+ARI +++RR Sbjct: 64 VLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLRRY 123 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +++ TG+L ++L V +I LT KE+++++LL K L++ L Sbjct: 124 NLTSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNYLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ E + +DV I LRKK+ + + YIET+ G GY + Sbjct: 184 DKIWGYEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGYKI 229 >gi|325956445|ref|YP_004291857.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333010|gb|ADZ06918.1| Response regulator [Lactobacillus acidophilus 30SC] Length = 238 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M+IL++EDD ++A + + K E + + G + +++ K ++D I LDL L Sbjct: 1 MKILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 61 GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 120 Query: 119 SRG----------HAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 I T L ++ + V + LT KE+ ++ ++ + Sbjct: 121 VMMEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 181 VFSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 235 >gi|90581397|ref|ZP_01237192.1| osmolarity response regulator [Vibrio angustum S14] gi|90437374|gb|EAS62570.1| osmolarity response regulator [Vibrio angustum S14] Length = 239 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A +I G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + ++ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGRE 238 >gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2] Length = 228 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 3 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R + R S Sbjct: 63 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + I TV G GYVL E + Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEERDE 228 >gi|302538254|ref|ZP_07290596.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302447149|gb|EFL18965.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 222 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED++ LA +++ L+SE F+V V G G+ + +++D I+LD+ L + G+ V Sbjct: 1 MVVEDERRLALALQRGLRSEGFSVDVAHDGPQGLWMACEHDYDLIVLDIMLPGLNGYRVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 LR A + + +L+ D+ L +GADD++SKPF+ LVAR+RA+ RR+ A Sbjct: 61 ARLRAAGNESGILMLTAKDGEYDEAEALDTGADDFLSKPFSYLVLVARLRALGRRTGRRA 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + GDL V+ G I LT +E+ ++E L+ R + K L ++D Sbjct: 121 PRTMQFGDLLVDPARHLCSRGGTEIRLTAREFAVLECLARRAGEVVPKREILEQVWDSAF 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V + +R+K+ +A G++ +ETV G GY L + Sbjct: 181 DGDPNVVEVHVSAVRRKI-DAPFGRSALETVRGAGYRLAADG 221 >gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 217 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 9/220 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ ++ L+ G ++ + +D IILD+ L + GFEV Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 TP LS +S+ D+++G GADDY++KPF EL+AR+ A++RR++ Sbjct: 64 ----IEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G++ ++ + V G + T KEY+++E+L +N L++E L ++ Sbjct: 120 ASCFEA-GNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I KLRKKL ++ I+TV+ GY L Sbjct: 179 FEGDTRTVDVHIQKLRKKLE----WEDRIKTVYKLGYRLE 214 >gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1] gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1] Length = 243 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + ++E L E + V G G+ +E DA++LD+ + + G Sbjct: 20 RILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVMMPVLDGLG 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR TP+ +L+ + S+ ++V GL++GADDY+ KPF +ELVAR+RA++RR+ Sbjct: 80 VCRQLRAMGDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAAP 139 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ +T + + E ++ELL L +E+ L ++ Sbjct: 140 APGGAAALGFADLVLDPATRTGRRGSRPLEFSRTEAALLELLVRHAGQVLPRELILELVW 199 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P+ + V+I LR+KL A G + TV G GY L Sbjct: 200 GQDFGPDSNSLAVYIGYLRRKLE-AGGEPRLVHTVHGVGYRL 240 >gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium] gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium] gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium] gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium] gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613] gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679] gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis] gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis] gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium] gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium] gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium] gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium] gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium] gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus] gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis] gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium] gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium] gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium] gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium] gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium] gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium] gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium] gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium] gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613] gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679] gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis] gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis] gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis] gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis] gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium] gi|383762|prf||1904198A vanR gene Length = 231 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL LK+EN+ V+ ++ +E E D ILD+ L G Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+G + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N++ + ++ LT E+ ++ +L K ++ E+ Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+++ YI+TVWG GY + + Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >gi|15827334|ref|NP_301597.1| two-component response regulator [Mycobacterium leprae TN] gi|221229812|ref|YP_002503228.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|13092883|emb|CAC30282.1| putative two-component response regulator [Mycobacterium leprae] gi|219932919|emb|CAR70867.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F+ V G + + D ++LDL L + G + Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 67 VCRVLRADSGV-PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D+ +++ A V G I LT E+ ++ L+ + T+++ L ++ Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 225 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+ + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V G+L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 SSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLDAP 224 >gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676] gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676] Length = 228 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] Length = 233 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I +L FN E + D I+LD L G Sbjct: 4 KILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWMLPGGTGVS 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + L+ + + P+ +L+ S +DKV+G ++G DD+++KPF+ +EL+ARI+A++RR Sbjct: 64 LAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + L ++ A V + G+ + L E++++ ++E L+++ Sbjct: 124 SPTSLEEEVDFHGLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK +S G +++++TV G GY Sbjct: 184 WGTNIYVEDRTVDVHIRRLRKAISGE-GHEDFVQTVRGAGYRF 225 >gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 226 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ AH + L F V V G DG + E+D IILD+ L + G+ Sbjct: 1 MRLLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + +TPV L+ +IED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QLLQLVR-QRGATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL +++ + V G RI LT KE+ ++ LL+ R+ L++ + + +++ Sbjct: 120 LREAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V + +LR K+ + I TV G GY L A DE Sbjct: 180 LNFDSDTNMVEVAVRRLRAKV-DDPYMPKLIHTVRGVGYQLE--APDEA 225 >gi|28210587|ref|NP_781531.1| two-component response regulator [Clostridium tetani E88] gi|28203025|gb|AAO35468.1| two-component response regulator [Clostridium tetani E88] Length = 228 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 5/225 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+IED++ ++ ++ L E + V T G +GIE+ K F IILDL L DI Sbjct: 1 MKESILIIEDEEKVSSVLKAYLGKEGYKVISTTSGIEGIEIFKKGNFKLIILDLMLPDIE 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R + + + +++ GL G D+Y+ KPF+ EL AR+ A+ RR Sbjct: 61 GEEVCKIIRGISDVYIFML-TAKGDLSNRIEGLNIGGDEYLVKPFSPRELTARVNALFRR 119 Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + + G+L +N + VE++ + LT E+Q++ L+ K T+EM +N Sbjct: 120 IGGEDEEILSFNNGELKINKIKRIVEIEKRDVKLTPNEFQILYALASNKGKVFTREMLIN 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +RKK+ + Y+ TV GY Sbjct: 180 SALGLDFQGFDRTVDVHVKNIRKKIEKDSRNPKYVLTVTRVGYKF 224 >gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 226 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E + + G ++ K D ++LDL L + G E Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ S D V+GL+SGADDY+ KPFN +ELVAR+R +R + Sbjct: 64 ICARIREESGV-PIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPASD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ V +I+LT E++++ L+++ T+EM L ++ Sbjct: 123 AATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++++V + +LR K+ + TV G GY Sbjct: 183 HYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGYR 221 >gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 231 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+ + D I+LD+ L I GFEV Sbjct: 10 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 70 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V G+L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 129 SSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLDAP 230 >gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 227 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L ++ G E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +++ S DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLR-QRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSP 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + ++++ V V G + L KE++++ELL LT+ ++ Sbjct: 122 DVAESGAPTLAAGPVRMDIERHVVTVDGGTVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ +I TV G GY Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEPEPSAPRFIVTVRGLGYKFEP 227 >gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 244 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 15/232 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A +I L +E + V G G+E DA++LD+ L I G EV Sbjct: 17 ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVMLPGIDGLEV 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A+ P+ +L+ D + GL GADDY++KPF+ ELVAR++A++RR Sbjct: 77 -CRRIQAERPVPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 135 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ +V GD+ ++ + V IHLT E++++ +L+ T T+E Sbjct: 136 AQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRER 195 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D I LR+KL I TV G GY A Sbjct: 196 LLAEVWDWADASGTRTVDSHIKALRRKLGAD-----LIRTVHGVGYAFEPPA 242 >gi|297567509|ref|YP_003686481.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851958|gb|ADH64973.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 218 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 134/222 (60%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + ++ L++E + V GE+ + L + + +D ++LD+GL GF Sbjct: 1 MRILLVEDDLEVGSLVKETLEAEPYAVDWAQDGEEALGLWQSFPYDLVVLDVGLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + PV +L+ ++D+VRGL++GADDY+ KPF+ EL AR+RA++RRSR Sbjct: 61 SLLTHLRGQGGAAPVLMLTARDGLDDRVRGLEAGADDYLIKPFHLRELRARVRALLRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + + G LS++L AK +G + L+ KE+ ++E LSL +T +E L H++ Sbjct: 121 GVSSNRVEVGRLSLDLRAKQAWWEGEPLELSAKEWLILEFLSLHPDTFYPRESLLEHVWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G + + +D +I +LR+KL+ IET G GY L Sbjct: 181 GEASIDPRSLDPYISRLRQKLA-----PEAIETRRGLGYRLV 217 >gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G++ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227 >gi|289422314|ref|ZP_06424164.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289157259|gb|EFD05874.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 237 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 17/238 (7%) Query: 1 MRI---LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M++ LL+ED+K +A ++E+ L+++ + V G++G+E+ + E I+DL + + Sbjct: 1 MKVYTVLLVEDEKDIADAVEVYLRNQGYEVIKASNGQEGLEMIEKNEVHLAIVDLMMPVM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ LR K PV ILS S DK+ GL GADDY++KPF EL+AR+ + +R Sbjct: 61 DGTTMIMKLR-EKYDFPVIILSAKSEEVDKIMGLNIGADDYVNKPFKPLELLARVNSQLR 119 Query: 118 RSRGH------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 R + + G L +N + V V G + +T E+++I LL Sbjct: 120 RYTKYLNLVKEGGEENKNDGIYTIGGLELNEHTRVVTVDGLPVKITPIEFKIINLLIKNP 179 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +++ + V I +R+K+ + Y++ VWG GY + + Sbjct: 180 GRVYSSEEIYEKVWN-ETAISTDTVMVHIRNIREKIELDSKNPKYLKVVWGVGYKIDK 236 >gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 241 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ ++SE+ + G++G++ K E+ ++LD+ + + GFE Sbjct: 14 KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 74 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 132 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++L+ ++V + L KE+ ++ + + LTK+ Sbjct: 133 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 193 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 241 >gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ LK+E V+ G D + L + ++ II+D+ + + G Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIN 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K + V G I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ + Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230 >gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] Length = 243 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + + V +D D I+LD+ + G Sbjct: 5 KILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVMMPGEDGLA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R LR + PV +L+ D++ GL+ GADDY+ KPFN EL ARI++++RR Sbjct: 65 VVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRHHA 124 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +A ++ G+ +NL + + G + LT E+ ++ +L LT+E Sbjct: 125 TPALAALHNADDVVEFGEFVLNLGQRELRRAGQPVSLTSAEFAVLSVLVSHPRRPLTREQ 184 Query: 174 FLNHLYD-GRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENA 225 + G E + IDV I +LRK L ++ YI+TVWG GYV + Sbjct: 185 LMELALGKGNGESLDRSIDVHISRLRKALESGDSDSQLRYIQTVWGYGYVFVPDG 239 >gi|312870288|ref|ZP_07730416.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|311094172|gb|EFQ52488.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 238 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 16/239 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M IL+IED+ ++ + + LK +N+ G + E ++D I+LDL L Sbjct: 1 MNILMIEDNHSVCEMMAMFLKKQNWQYEFAYDGVEAEEKFNAAPDKWDVILLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R + P+ +L+ + D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRR 120 Query: 119 SRGHAQSLIVTG-----------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 S+ Q G + +N + V + +I LT KE+ +++ L+ + Sbjct: 121 SQLAKQPAEQPGTADRDFDVKTKNFRMNTKTREVFLYDQQIDDLTPKEFDLLKTLASKPR 180 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 T+E L ++D + + +D I KLR+KL + G I+TVWG GY + A Sbjct: 181 QVFTREQLLQLVWDYEYYGDERTVDAHIKKLRQKLEDL--GPQVIKTVWGVGYKFDDEA 237 >gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 229 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 ++L++ED++ + + + LK + GED + K +LD+ L I GF Sbjct: 3 KVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + +L+ + DKV GL +GADDY++KPF+ EL AR+ A+ RR+ Sbjct: 63 EVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRRTG 122 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + N +T+E G R+ LT EY +++L L++E L+ Sbjct: 123 GEEEETSPDEISQPPFLLNTRNRTLEKNGQRVKLTQVEYGIVKLFMENPGKALSREEILD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E+KI+DV I +LR K+ + Y+ TVWG GY Sbjct: 183 AVWGKDYFGELKIVDVNIRRLRIKIEDNPTKPTYVNTVWGYGYKW 227 >gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 226 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L SE +NV G++ ++L K + IILD+ + ++ G E Sbjct: 8 ILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVMMPEMDGVEA 67 Query: 63 LRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R T + + + G +GADDYI+KP + LV+++ A++RR Sbjct: 68 CEQIRKIPDLDTIITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRRIVE 127 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL +N + + I L KE++++ LL+ + +E L+ ++ Sbjct: 128 DSTNDNVVKIGDLIINREEYKILKGKEEILLPRKEFELLSLLASKPGKVFKREDILDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IDV I KLR+KL + +TV G GY Sbjct: 188 GNEVVVGGRTIDVHIRKLREKLGD-----KRFKTVKGVGYKFV 225 >gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii SH046] gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii SH046] Length = 254 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVFVPDGAE 254 >gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 238 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + +E+ +K N V + G +E + +FD I+LDL + + G EV Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR +TP+ +++ + DKV GL+ GADDYI+KPF+ EL AR +A++RRS Sbjct: 70 CRELR-KTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 123 AQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q GDL VN++ + V ++G +I L+ KE+ ++ LL+ + ++ L Sbjct: 129 NQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ ++ I +LR K+ G YI T WG GY E+ Sbjct: 189 DVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+ED+ + ++ +L+ + + + +E D I+LD L G + Sbjct: 4 RVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWMLPGGSGVQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + L+ + + P+ +++ EDKVRGL SGADDY++KPF+ +ELVARI+A++RR Sbjct: 64 LAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIRRV 123 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ + + + E++++ ++E L+++ Sbjct: 124 TPTSSDELIEFNGLKLDPVSHRATANDEPLDMGPTEFKLLHFFMSHSERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK +S G + I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAISR-FGHDSMIQTVRGSGYRF 225 >gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16] gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16] Length = 239 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSSEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 223 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L++ED+ + I L + FN++ GE+G+ + D IILD+ + + Sbjct: 1 MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 G E+L LR + PV L+ EDK+ G + GADDY++KPF+ + LVA+++A + R Sbjct: 61 GLEMLEKLR-EVSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S+ LSVN + V+V + I L+ KEY+++ L ++ L+++ L++ Sbjct: 120 TREDLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +D I +LR+KL + + YI TV G GY Sbjct: 180 VWGIDYYGDIRTVDTNIKRLREKLLDKSS---YIVTVRGSGYKFE 221 >gi|300854679|ref|YP_003779663.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434794|gb|ADK14561.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + + L L+ EN+ V+ G +++ K D I+D+ + ++ G++ Sbjct: 3 KILIADDEQEIIELMTLYLERENYEVFGAYDGFSALDILKEGAIDIAIIDIMMPNMDGYQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ +R K PV ++S S I DK+ GL+ GADDYI+KP + E++AR++A +RR Sbjct: 63 LIKKIR-EKYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVMARVKAQLRRCSE 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G+L ++ + I +T EY+++ LL TK+ Sbjct: 122 FNCNEEKDTETIVVGELKLDTSCCVIYKGDKPISITSTEYKLLLLLMGNPKKVFTKKQIF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + I V I KLR K+ + Y++T+ G GY Sbjct: 182 ESVWNEPFYGDDNTIMVHISKLRDKIEEDSKNPVYLKTIRGLGYKFE 228 >gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 233 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL + L++ F V G +E + +E D I+LD L I G E Sbjct: 10 RVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R +R A P+ +L+ + + +D++ GL+ GADDY++KPF+ ELV RI++++RR Sbjct: 70 VTRRVR-AICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALG 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S G L ++ + V G + LT +E+ ++ L + ++E L H++ Sbjct: 129 PLSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V + +LR K+ + ++TVWG GY+LR Sbjct: 189 GWTF-GDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLLRSE 232 >gi|91206110|ref|YP_538465.1| transcriptional activator protein CzcR [Rickettsia bellii RML369-C] gi|157826457|ref|YP_001495521.1| transcriptional activator protein CzcR [Rickettsia bellii OSU 85-389] gi|91069654|gb|ABE05376.1| Transcriptional activator protein CzcR [Rickettsia bellii RML369-C] gi|157801761|gb|ABV78484.1| Transcriptional activator protein CzcR [Rickettsia bellii OSU 85-389] Length = 237 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 133/223 (59%), Positives = 170/223 (76%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDEPEMANLIELTLASEGIVCDKVSVGLEGLRLGKLGRYDLMILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VE+ G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEIDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGGK+YI+TVWGRGY+L+E Sbjct: 181 SLDEPEMKIIDVFICKLRKKLSDAAGGKDYIDTVWGRGYMLKE 223 >gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1] gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1] Length = 254 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G +++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >gi|253998110|ref|YP_003050173.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] gi|253984789|gb|ACT49646.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 226 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G DG + +D IILD+ L G+ Sbjct: 1 MRILVVEDEHKTGEYLRKGLTEAGFVTDLIQDGLDGQHMALAEHYDLIILDVMLPRASGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ ALR A TPV L+ +ED+V+GL+ GADDY+ KPF EL+ARIR ++RR R Sbjct: 61 QIIAALRKAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L V++ + V+ G +I LT KE+ ++ELL R+ L++ + + ++D Sbjct: 121 TREADVLQVANLEVDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAMRRLRAKI-DDPFEPKLIHTVRGMGYVL 220 >gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 228 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 3 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R + R S Sbjct: 63 QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + I TV G GYVL E + Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEERDE 228 >gi|298491352|ref|YP_003721529.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233270|gb|ADI64406.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 233 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 112/227 (49%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD ++ + + L + + + G+ + L + + +ILD L D+ G++ Sbjct: 5 KIMIVDDDFSVRNLVYRFLSRK-YRIESAADGKSAMALFEQFNPALVILDWNLPDVNGYK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + + ++ + V IL+ + DK+ L +GADD+++KPF+ E+ R+ A +R Sbjct: 64 LCQEM-QSRTNVLVLILTSRNDEADKISVLAAGADDFMTKPFSLAEVEVRVEALLRRIRY 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V L++N + + V + + LT E+ ++ L+ ++ + + Sbjct: 123 IHPSQSQRLVFKQLAINPEGREVTLNDKPLALTALEFNILHFLASHPGQAWSRPQLIQKI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++DV I +LRKK+ + +I+TV G GY Sbjct: 183 WGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFEPPE 229 >gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 234 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDK + L+ E V + G +G+ ++D ++LD L D+ G Sbjct: 12 KILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRMLPDLDGLS 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 +++ LR A TP +L+ +S + D++ GL++GADDY+ KPF EL AR+ A R Sbjct: 72 LIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPGL 131 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL ++L V G I L +E+ ++E L RK T+ M L ++D Sbjct: 132 QQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVWD 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ +++ I +LR K+ + IETV G GY + Sbjct: 192 ITFDPQTNVVETHISRLRAKV-DRPFDNELIETVRGAGYRI 231 >gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 223 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K++ I + E V G D I+ K +FD I++D+ + + GF Sbjct: 3 KILVVDDEKSIREVIRTYAEFEGHEVVEAVDGLDAIDKVKEEDFDVIVMDIMMPRLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + ++ + PV +LS S DK+ G + G DDY++KPF+ +EL+AR+ I R ++ Sbjct: 63 SYKEIK-KIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L ++LD + V V I LT KEY ++ + KN L+++ LN ++ Sbjct: 122 VEENKTMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +D I LR + + +I TV G GY Sbjct: 182 YDFYGEDRTVDTHIKMLRNSIKEY---RKFIITVRGVGYKF 219 >gi|300867327|ref|ZP_07111985.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300334681|emb|CBN57151.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 227 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 121/222 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L S+ L ++ + V GE + + + +D I+ D+ L + G Sbjct: 1 MRILLVEDDSQLIASLTEALVAQRYIVDSARDGESAWDKTQGFVYDLILTDVTLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR +P+ +L+ + DKV GL +GAD Y+ KPF +EL+A+IRA++RR + Sbjct: 61 GLCERLRDRGYLSPILMLTARDTSLDKVIGLDAGADVYMVKPFQLQELLAQIRALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +G+LS++ + V + IHLT KE+ ++E L L++ + ++ Sbjct: 121 SGMSPILRSGNLSLDPASYEVIYERSPIHLTPKEFALLEALLRYGKRVLSRSAIIEQVWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ PE I +I LR KL A K+ IETV G GY L+ Sbjct: 181 WQESPEEDTIKTYIKNLRAKLKAAGAPKDLIETVHGVGYRLK 222 >gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 243 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + + + L+ E V G + +E + D ++LD+ + + GFE Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR S PV +L+ ED+++GL+ GADDYI KPF+ ELV+RIRA++RR Sbjct: 69 LRRLR-QASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHYTP 127 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V V G R++L EY+++ L +T E L+ + Sbjct: 128 PPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLSKV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + E + +++ LR+K+ YI T G GY + +D Sbjct: 188 WGPEYRDETHYLRLYVTYLRQKIEEDPANPKYILTERGIGYRFVDFKRD 236 >gi|331087248|ref|ZP_08336318.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408934|gb|EGG88395.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 231 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DDK + +IE+ L+ E +NV G++ I++ E D +I+D+ + + G Sbjct: 4 VLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEVDLLIIDVMMPKLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K S P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 64 TLKIR-EKNSLPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRRYTQL 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ G L ++ + K V V G I LT EY ++ LL + + Sbjct: 123 GSTVVEKKSSVFTVGGLKIDDELKEVTVDGDVIRLTPIEYNILLLLVKNQGKVFSINQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 ESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230 >gi|309775270|ref|ZP_07670279.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308916933|gb|EFP62664.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ ++A +IE+ LKS+ + G E+ + D I+D+ + + G + Sbjct: 5 ILIAEDEASIADAIEIYLKSQGYQTLKAANGAAAWEIVESTPVDLAIIDVMMPVMDGIAL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ILS S DK+ GL GADDY++KPF EL+AR+ A +RR + Sbjct: 65 TMKIR-ETYDFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHMRY 123 Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q L G + ++ +K V V G LT E+++++L + + Sbjct: 124 RQLLEQKQEVEDSLLLGGIELHRKSKEVFVDGEPRRLTPIEFRILQLFMEHPGQVFSSDD 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++ + + V I LR+K+ YI+ VWG GY + + Sbjct: 184 IYEHVWK-EAAVNTETVMVHIRNLREKIEINPRTPRYIKVVWGVGYKIEKQ 233 >gi|229110657|ref|ZP_04240221.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228672725|gb|EEL28005.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLEKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149] gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149] Length = 240 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 11/233 (4%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+ +DDK + +IE+ L E + V G +++ + +ILD+ + + Sbjct: 8 MKMYSILVCDDDKEIVEAIEIYLTQEGYQVLKAYDGMQALKMLETETVHLLILDVMMPRL 67 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +R S P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +R Sbjct: 68 DGIRATLKIR-ETNSIPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLR 126 Query: 118 RSRG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R +++ G L +N D K V V G + LT EY ++ LL + + Sbjct: 127 RYTQLGGNVSSTQETIYEVGGLRINDDLKEVTVDGEMVRLTPIEYNILLLLMKNQGRVFS 186 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 187 INQIYESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 239 >gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +A ++ L++E + V + G +G+ L + E +ILD+ L + G ++ Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLDL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++LR PV +L+ +SSIEDKV GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 66 CQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGREQ 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L+ G I LT KE +ELL ++E L++++ Sbjct: 126 RPRATTLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRE 223 ++P ++DV++ +LR K+ G ++TV G GY L + Sbjct: 186 MHEDPLTNVVDVYVRRLRSKI--DEGHPLALLKTVRGLGYRLDD 227 >gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630] gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13 [Clostridium difficile] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+DDK L + +E LK+ENF V V G+ G++ K + IILD+ L + G++ Sbjct: 3 KILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R + PV +L+ S DKV GL+ GADDY++KPF E VAR+++++RR Sbjct: 63 VLTEIR-KLNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTV 121 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L +++ +TV + ++I+LT +E+ ++ L+ + TKE Sbjct: 122 FNNHTEENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H+++ + + I F+ KLRKK+ N +YI+T+ G GY Sbjct: 182 HVWNNEYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGYRF 226 >gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR +L+IEDD +A LK + + G G+E ++ II+DL L D G Sbjct: 1 MRSVLIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIYEVIIVDLMLPDKNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+++A+R P+ ++S S DK+RGL GADDY++KPF+ EL AR+++ + R Sbjct: 61 YEIIKAVRNRFEI-PIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRY 119 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I L +N + V V G I LT KEY+++ L+ N TKE Sbjct: 120 ERLKGKNTCSEVINHKGLEINAGSHKVFVNGREIQLTTKEYELLFFLASNPNIVFTKEHI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ + + V I K+RKK+ AG YIET+WG GY Sbjct: 180 FNTIWGDDYYGDTATVPVHIQKIRKKIEKDAGNPQYIETLWGTGYRF 226 >gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K++A ++ K E + V GE+ +E K ++ D +ILD+ + + G+E Sbjct: 4 KILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLTGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + + +L+ + I DKV GL+ GADDY++KPF+ ELVAR +A+VRR Sbjct: 64 VCRKLENRRGMGII-LLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G + VNL +T+ V + LT KE+ +I LL T+E L+ Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + +D+ + +LRKK+ A ++TV+G GY Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEA--EPYLLQTVYGVGYK 223 >gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + L D I+LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGSGIN 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ + PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRV 123 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTSVEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AEGHDRLVQTVRGAGYRF 225 >gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G + E+D ++LD+ L G+ Sbjct: 2 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+RR + Sbjct: 62 TLLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 121 PRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 181 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 221 >gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + ++ ++ E F V G++ ++ ++LD+ + I G EV Sbjct: 5 ILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIMMPIIDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + P+ +++ S DK+ GL SGADDYI KPF+ E+VARI+AI+RR Sbjct: 65 CKSIRFKSNT-PIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRITPP 123 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I L ++++ ++++ G I+LT KE +++ +LS N ++++ L+ ++ Sbjct: 124 ENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLDSIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I ++R KL+ I+T+WG GY Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLALNGQYNWDIKTIWGMGYKFE 226 >gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 270 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 52 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 232 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 269 >gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA + L E F V V G DG+ L ++D I+LD L I G Sbjct: 1 MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR TPV +L+ +ED+V+GLQ GADDY+ KPF ELVAR+ ++RRS Sbjct: 61 AVLAALR-QTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++L + G RI LT KE+ ++ LL R+ L++ Sbjct: 120 PSVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D + E +++V + +LR KL + K + TV G GYVL Sbjct: 180 ASQVWDMNFDSETNVVEVAVRRLRLKL-DQPFEKPLLHTVRGMGYVLE 226 >gi|42782326|ref|NP_979573.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217960663|ref|YP_002339227.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096718|ref|YP_002530775.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228986323|ref|ZP_04146460.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229139866|ref|ZP_04268431.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|229197364|ref|ZP_04324091.1| DNA-binding response regulator [Bacillus cereus m1293] gi|42738251|gb|AAS42181.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217065124|gb|ACJ79374.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240776|gb|ACM13486.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228585988|gb|EEK44079.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228643531|gb|EEK99797.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|228773350|gb|EEM21779.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L S+ + + + IEL + + D ++LDLGL + G E Sbjct: 7 RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEKPDLVLLDLGLPGMGGHE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR R + PV ILS + V L+ GADDY++KPF ELVARIR +R Sbjct: 67 LLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKFQ 126 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +GDLSV+L + V+V+G I L+ KEY ++ +L LT L ++ Sbjct: 127 QQGEKPVFQSGDLSVDLVKRIVKVEGKEIKLSPKEYDILRILVQHAGKVLTHHFILKQIW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + + V++ +LR+K+ YI T G GY LR + Sbjct: 187 DDSTDVQ--YLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLRVD 229 >gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + H + +++ F+V G +E+ + + D ++LDL + I GFE Sbjct: 5 RILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMIPGIDGFE 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V + L+ PV +L+ D++ GL+ GADDY+ KPF+ EL+ RIRAI+RR Sbjct: 65 VCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRRS 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + + LSV+ + + V G LT E++++ LT++ L+ Sbjct: 125 ATDATEERIWRSEGLSVDFEGHKLTVDGAETPLTATEFKLLAEFVRTPGKVLTRDQLLDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E + +D + +LR+KL + +ETV G GY R Sbjct: 185 VWAYQFEGYARTVDTHVRRLRRKLGP---HADRVETVRGVGYRFR 226 >gi|308175743|ref|YP_003922448.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens DSM 7] gi|307608607|emb|CBI44978.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens DSM 7] gi|328555717|gb|AEB26209.1| two component transcriptional regulator, winged helix family protein [Bacillus amyloliquefaciens TA208] gi|328914103|gb|AEB65699.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens LL3] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 116/220 (52%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ A+ + + L +E F V G + L K ++ +LD+ + + G Sbjct: 7 IKVLIVDDEPAIIDFLTMGLVNEGFEVMSAADGMSAMNLVKTFQPHIAVLDVMMPGMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R L+ +T V +L+ +E +V+ L GADDY+ KPF+ EEL+ARI A +R Sbjct: 67 ELSRMLK-KTSNTAVIMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQF 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H +V G ++ ++ + + L+ EY++++ L LR T L+K L+ ++ Sbjct: 126 PHLFDEVVLGPFRIDDRSREIHYNEQPLKLSATEYELLKFLVLRHGTVLSKTRILDQVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL + I TV G GY Sbjct: 186 YDFYGEDNIVEVYIRSLREKLKD--KEHKVIRTVRGAGYR 223 >gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI] gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ L ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223 >gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus prevotii ACS-065-V-Col13] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L + + GE+ I++ + + ILD+ L I G+E Sbjct: 5 KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIMLPGISGYE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V +R T + ++S S DK+ GL+ GADDYI KPFN +EL+ RIR+++R Sbjct: 65 VCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRVNL 124 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + + I G ++++ AK+ I +T E+ ++E K +T++ Sbjct: 125 TNSQDKEKTRKTITDGPFTLDIYAKSFFKNDKEIDVTPTEFTILENFINNKGKAMTRDEI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ + YIETVWG GY + Sbjct: 185 MAMTWGNNYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYRWK 232 >gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD I + N+ + G G+ L ++D +ILD L + G Sbjct: 15 MKILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGL 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 75 KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L + L + V + G + L KE+Q+++ L N +++ + ++ Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 195 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 237 >gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM 14600] gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM 14600] Length = 250 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L++EDD A+ S+E L+ + V E+ ++ + +D ++LD+ L D G+ Sbjct: 21 IHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQKLQERPYDLVLLDITLPDGSGY 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V A++ TPV L+ V G GA+DYI+KPF ELV+RIR ++R ++ Sbjct: 81 SVCNAVK-RDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRHTK 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + V +LD+ V + L+ EY+++ + + L++ L +D Sbjct: 140 RQSNIERVQDLRV-DLDSGRVFKGEQELSLSAMEYRLLGIFLENRGRILSRSQLLEAAWD 198 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + V+I +LR+K+ + I TV G GY + ++ K Sbjct: 199 FAGDYVNDNTLSVYIKRLREKIESDPQNPTMIRTVRGLGYRMEDSTK 245 >gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33] gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33] gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYRGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224 >gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC 35098] gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC 35098] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L +E L + GE+ ++L +D IILD+ L GF Sbjct: 1 MKVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + +L+ S I+D+VRGL GA+DY++KPF+ +EL AR+R+++RR Sbjct: 61 EVLRDIRQFNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I+ DLS + + V G + LT KE +IE L L + +T E + H++D Sbjct: 121 IMEETEIMINDLSFDTVKREVVYDGRILALTAKETGIIEYLFLNRQRYVTVEEIMEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V + LRKK+ A G KNYIE V G+GY + EN Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKATG-KNYIENVIGKGYKIYEN 223 >gi|255100919|ref|ZP_05329896.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306809|ref|ZP_05350980.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + +LD+ L DI G Sbjct: 4 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDISGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + +DK+ G SGADDYI KPF+ +EL+ R+ A++RR Sbjct: 64 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 123 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + +S ++D + + G I LT E+ +++ L +L+++ L+ Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKEE 232 >gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L++ F GE+ + L + DA++LD+ + GF V Sbjct: 6 VLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ L+ + DKV+GL+ G DDYI KPF+ EL+AR+ A++RR + Sbjct: 66 CARIR-EQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+++ +TV V G + LT KE++++ L+ + +++ L ++ Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGKPVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR KL +AA +I+TVWG GY Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAA---RHIQTVWGIGYKFE 223 >gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR+ A +RR + Sbjct: 63 VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I+ G L+++L+++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + + I K+R K + N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225 >gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD + +++ L + V G + + +ILD+ L + G Sbjct: 3 IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R TP+ +++ +S E+++R + ADDY++KPF + L+ R+ A++RR Sbjct: 63 ELLREFRAK-NDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR-S 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G L++ + TV G + LT KE++++ LL K TLT E+ L+ ++ Sbjct: 121 GALAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + I LR KL I+T+ G GY L E+ Sbjct: 181 YDFESDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219 >gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 233 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 4/229 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ + V V G+ E + D +ILDL L + G +V Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RR Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLT 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 IV G+L ++L +TV +G + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQRL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV I KLR+K + A I+TVWG+GY+ + + Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDNADEARKIKTVWGKGYLFSRSEWE 232 >gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5] gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5] Length = 226 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + ++ L E + V G + ++L + + +ILD+ + + G+ Sbjct: 5 KILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R P+ +L+ S D+++G G D+YISKPF+ + LVAR+ AI R Sbjct: 65 QVCREIR-EHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQ 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G + ++ A V++ I L+ KE++++ + L++E LN+++ Sbjct: 124 STESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILNNVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL +YI T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG---DYIRTIWGMGYKFE 223 >gi|255527737|ref|ZP_05394592.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187215|ref|ZP_06855612.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296187220|ref|ZP_06855617.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508577|gb|EET84962.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048250|gb|EFG87687.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296048255|gb|EFG87692.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED++ + I +L +++ VY G +E+ Y FD ++LD+ + DI G+ Sbjct: 4 IRILIVEDEEPIRKLIYKILSTQDMLVYQAQNGSQALEMINKYSFDLVLLDILMDDISGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V R +R + P+ LSG ED ++GL GAD YI+KPF+ L A++++ ++R Sbjct: 64 DVAREIRKHNLQLPIIFLSGKKDDEDIIKGLDIGADSYITKPFSPSVLSAQVKSKIKRRK 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++IV +L+ + L+ KE ++++ N +KE Sbjct: 124 EILHENTDSNIIVHFPFKYDLNTYKFYKNDIELKLSSKETKLMKFFMEHPNQVFSKEQLY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G + + I V+I LR K+ + +I+TVWG GY Sbjct: 184 QSVWQGNN-SDDNSIMVYIKYLRNKIEDIPRKPKHIKTVWGIGYEF 228 >gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F + V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] Length = 237 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 +E I+V++ +LRKK+ + I TV G GY L + A + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAPAGASDAPNAA 233 >gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 246 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G D ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAGDGPDAVKLAKEFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL--VARIRAIVRR 118 E+L +R P L+ +++D++ GL +G DDY++KPF+ EE+ Sbjct: 82 ELLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V GDL +N+D + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLRYLMENPRRVVSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WDYDFGGQANIVELYISYLRKKV--DAVHPPMIHTVRGAGYVIKP 244 >gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus amyloliquefaciens LL3] Length = 250 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + + LM++ F+V + GE ++L + D IILD+ + + GFEV Sbjct: 29 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 88 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A+R + P+ +L+ DKV+G SGADDY+ KPF EL AR++A+++R R Sbjct: 89 SEAVR-SFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 147 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ L+ G ++++ ++TV G + L +E++++ L+ N T ++E + ++ Sbjct: 148 AEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIWGF 207 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ I TV G GY Sbjct: 208 DYEGDERTVDVHIKRLRERFPEK-DYPFAIHTVRGLGYRFV 247 >gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLRLDPVSHRVTANDTALDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-FAGHDKLIQTVRGAGYRF 225 >gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F++ G G+ + +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFSLDWFTDGLQGMTALESAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 61 EILRRWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V I LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSH-----FIRTVHGVGYTLGD 218 >gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1] gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1] Length = 226 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA +I +LK+ ++V V G+ G++ +D IILD+ L + GF Sbjct: 1 MRILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R KI TP+ L+ I DKVRGL GADDY++KPF EEL+ARIR ++RR Sbjct: 61 DILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D +NL + + L KE+ ++ L N +TKE+ + ++ Sbjct: 121 EITTDTLRFHDAELNLSTYELSCGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V+I LRKKLS I TV G GY L Sbjct: 181 FDADVEYNNVEVYISFLRKKLSFIKSN-VIIRTVRGVGYCL 220 >gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 254 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV + +LR+ + YI+TVWG GYV + + Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVFVPDGAE 254 >gi|227819484|ref|YP_002823455.1| response regulator [Sinorhizobium fredii NGR234] gi|227338483|gb|ACP22702.1| response regulator in two-component regulatory system with KdpE, regulation of potassium translocation [Sinorhizobium fredii NGR234] Length = 231 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + + L SE + V D I D I+LDLGL D+ G + Sbjct: 7 RILVVDDEPAIRKLLRVGLTSEGYAVLEAINARDAISQVAEKRPDLILLDLGLPDMAGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L R + P+ ILS + V+ L+ GADDY++KPF +EL AR+R R Sbjct: 67 LLAKWRSDALELPIIILSSRTDETGIVKALELGADDYVTKPFGMKELAARMRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + TGDLSV+L + V+V + L+ KEY ++ +L +T + LN ++ Sbjct: 127 QQGERPIFKTGDLSVDLVKRIVKVADKEVKLSPKEYDILRILVQYAGRVITHQHLLNKIW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DG + + + V++ +LR+K+ YI T G GY LRE + Sbjct: 187 DGSTDVQ--YLRVYVRQLRQKIERTPEQPQYITTETGVGYRLREAEQ 231 >gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas syringae pv. tomato T1] gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato Max13] gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas syringae pv. tomato T1] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ ED+ ++ L FNV G + + +D +ILD+ + I G+ Sbjct: 1 MKILVAEDEPKTGMYLQQGLLEAGFNVDRVLTGTEALHQALNESYDLLILDVMMPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +V++++R A PV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R+ + R + Sbjct: 61 DVIQSVRAAGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I GDL V+L + G RI LT KE+ ++ELL R+ L+K + + ++ Sbjct: 121 GAPNLTSIKIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +I+V I +LR K+ + I+T G GY+L + Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFDT-KLIQTSRGMGYMLDAPDAE 227 >gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM 30120] gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM 30120] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V E L I+LDL L G Sbjct: 6 KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESIHLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSQDDAVITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSYPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD ++ + L L+ V + GEDG+ L + + ++LDL L I G + Sbjct: 3 RVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGINGVQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ D V GL++GADDYI KP E + AR++A++RR Sbjct: 63 VCRRIR-ESSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLST 121 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G+L+++ TV +G R+ L E +++ LS +++ L ++ Sbjct: 122 PAGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + +++D + +LR K+ N AG YI+TV G GY Sbjct: 182 WDHSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGYRFGP 226 >gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ ++SE+ + G++G++ K E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++L+ ++V + L KE+ ++ + + LTK+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A + + F V D G DG+ L + IILD + + G Sbjct: 4 KILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 L+ALR A I TPV ILS + + ED+V GL SGADDY+ KPF EL+AR++ ++RR S Sbjct: 64 TLKALRAAGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLRRGGS 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++L ++ V+ + L +E++++E + +T+ M L ++ Sbjct: 124 GSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEGVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKL---SNAAGGKNYIETVWGRGYVLRENA 225 D +P +IDV + +LR+KL A G + + TV G GY L + Sbjct: 184 DYHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRLGPES 232 >gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE L+ VYV G G EL + +F +ILD+ + + G + Sbjct: 3 KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + + R PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A+ R Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ + G I LT KEY+++E + T L++ L +++ Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + ++DV++ LR K+ I TV G GY++ Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDF-EPKLIRTVVGVGYMME 224 >gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 115/220 (52%), Gaps = 1/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +DD+ + I L L+++ F + GE+ + + D ++D+ + G+ Sbjct: 2 IQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + ++ PV +++ DK++G G DDY+ KPF+ +E+VAR++A++RR R Sbjct: 62 ELTKEIK-EYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++I G++ ++ + L KE++++ L T++ + ++ Sbjct: 121 VEANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + + +DV I +LR++L++ I+T+ G GY Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220 >gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD AL I + LK E + V G + +F +LDLGL + G Sbjct: 1 MRILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHEDFALAVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A PV +L+ + D++ GL +GADDY+ KPF+ +EL ARIRA++RRS Sbjct: 61 QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ ++ G++ ++ + V +G + L KE+ ++ L + LT++ LY Sbjct: 121 NRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E ++V I LR+KL I TV G GY Sbjct: 181 WGEEAESNTLEVHIHHLRRKL-----FPELIRTVRGVGY 214 >gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 254 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+DD+ L I+ L+ + + + G +G E F A+ILD+ L + GFE Sbjct: 21 RLLVIDDDRKLCRLIKDYLEPMGYEIALAHTGPEGAEKAVSETFAAVILDVMLPGMDGFE 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ D++ GL+ GADDY+ K F+ EL+AR+RA+ RRS Sbjct: 81 VLKQIR-RASNVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + N ++T + + LT EY ++ L+ K ++E Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + + + + IDV I LRKKL + +I TV GY+L A+ Sbjct: 200 LDEIAERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYMLMNPAE 251 >gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +IE+ LK+E V+ G D + L + ++ II+D+ + + G + Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K + V G I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGALILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ + Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230 >gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60 ++L++ED++++ I + LK F V G + + + + D +LD+ + + GF Sbjct: 3 KVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + L+ +DKV L GADD++SKPF+ EL+ARI++++RR Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H ++ +G +++L AK + G I LT E+ +I+ ++NT L++++ L+ Sbjct: 123 VHRETAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 H++ + KI+DV I +LR+K+ N +++TVWG GY + Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGYKWK 228 >gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A + L+ F V V + G G+ +FD ILDL L I GFE Sbjct: 3 RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-EKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228 >gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075] gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075] gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC 5463] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A GG++ I+TVWG GY + Sbjct: 180 FERVWKQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|300789401|ref|YP_003769692.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798915|gb|ADJ49290.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ EDD+ A + L L+SE V + G ++ + D ++LD+ + ++ G + Sbjct: 4 RVLVAEDDEKQAEVLRLYLESEGHTVVLAPDGRAALDEARRDRPDLLVLDVMMPNVDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR V +L+ ++ +D + GL GADDY++KP++ EL+AR+R ++RR+ G Sbjct: 64 VCRILRQESDVA-VLMLTARATEDDLLLGLDLGADDYLTKPYSPRELMARVRTLLRRTAG 122 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L ++ V V G + T E+Q++E L + T+ L Sbjct: 123 RREPPDTALRAGSLRLDPVRHEVSVDGRPVDTTPGEFQLLETLIRQPGRVFTRRQLLELT 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +IIDV + LRKK+ ++ TV+G GY L Sbjct: 183 RGDDRFVSTRIIDVHVLNLRKKIEPDPQKPVHLRTVFGVGYKL 225 >gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 4/226 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL++ED+ + + L+ + V V G +G+ + + D ++LD+ + + G Sbjct: 1 MKTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 E LR R A PV L+ + DKV GL+ GADDY++KPF+ EL+AR+RA R Sbjct: 61 LEFLRRFR-AAEHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRG 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G+L ++ ++T VQG R+ LT E++++ ++ L Sbjct: 120 NEAPPSAFVRAGELEMDAASRTFLVQGSRVDLTRSEFELMAAFLRAPGRVFSRLE-LLEQ 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IDV + LR K+ G +IETV+G GY L + Sbjct: 179 LQEEALGAERTIDVHVRNLRAKIEPEPGKPRFIETVFGMGYRLNPD 224 >gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] Length = 233 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A +EL L+++ + V+ G+D ++ + D ILD+ L DI GF Sbjct: 5 MNILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 65 QILKQIR-QKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCT 123 Query: 121 GHAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ N + + LT E+ ++ LL + ++ E Sbjct: 124 QYNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 183 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I LR+K+S G ++I+TVWG GY + E Sbjct: 184 FEKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 233 >gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 246 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD A+ I L+ +++ G G L + D I+LDL L + GF Sbjct: 3 RILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR PV +LS + +DKV G +GADDY++KPF E++AR+RA++RR+ Sbjct: 63 VCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAIWFEDTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + ++ + Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPSSEQLPLSTD 242 Query: 235 TA 236 A Sbjct: 243 AA 244 >gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] Length = 221 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L + V GE+G L +DA++LD+GL I G Sbjct: 1 MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A +V G + LT E++++ L +++ + HLYD Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKK+ IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGID-----MIETVRGMGYRMREPE 220 >gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P] gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 115/226 (50%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L++E + ++ G++ I+ K I+LD+ + ++ G Sbjct: 6 IKILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMPEMDGI 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R + + L+ +V G ++GADDYI+KP + LV+++++++RR Sbjct: 66 EACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKSLLRR 125 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + + GD+ ++ + V G RI L KE+++ LL+ + +E+ L+ Sbjct: 126 LKSEKQNEETVTIGDIVIDREEYVVFKAGKRISLPRKEFELFSLLTSKPGKVFKREVILD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + + +TV G GY Sbjct: 186 TVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 226 >gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1] gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDDK + + L L+ + + V GE G+EL +D I+LDL L G Sbjct: 5 IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKKSGK 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + R +TP+ I++ SI DKV L GA+DYI KPF EEL+ARIR R Sbjct: 65 ELCQEFR-KLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 D+ ++L AK V +Q ++LT E+ ++E K + ++E + ++ Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E KI+DV+I LRKK+ YI T+ G GY+ + Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDVDN---KYIHTIRGFGYMFQ 223 >gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A + L+ F V V + GE G+E E+ ILDL L + GFE Sbjct: 3 KILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKKIREEKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V V T KE+ ++ L+ N TKE Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRFK 228 >gi|165868373|ref|ZP_02213033.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|164715099|gb|EDR20616.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 181 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 221 >gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis] Length = 220 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD + +++ L + V G + + +ILD+ L + G Sbjct: 3 IRILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R TP+ +++ +S E+++R + ADDY++KPF + L+ R+ A++RR Sbjct: 63 ELLREFRAK-NDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR-S 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G L++ + TV G + LT KE++++ LL K TLT E+ L+ ++ Sbjct: 121 GALAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + I LR KL I+T+ G GY L E+ Sbjct: 181 YDFEGDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219 >gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum] gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI+++ED++AL + L+ + ++V G+D K + D I+LD L + G E Sbjct: 4 RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ GD+ ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNLGREQDPIRTVRGAGYALDD 227 >gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +IE+ LK+E V G + +E+ ++ I+LD+ + ++ G Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVMMPNLDGISA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K + P+ ILS S DK+ GLQ GADDY++KPFN ELVAR+++ +RR Sbjct: 66 TYKIR-EKKNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVSF 124 Query: 123 AQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +N + K V+V G + LT EY+++ELL L + + Sbjct: 125 GTFEGIRKVVDLNGLTLEKETKEVKVNGEPVKLTPIEYKIVELLMLNAGRVFSIQEIYEL 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I K+R+K+ A Y++ VWG GY + Sbjct: 185 VWKEPGYNAENTVAVHIRKIREKIEIDAKNPRYLKVVWGVGYKME 229 >gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112] gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112] Length = 237 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + IILDL + +I G Sbjct: 9 MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 68 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 69 MDVIKRVRKDSDI-PILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 127 Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 128 QGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G+ I+TVWG GY + ++ Sbjct: 188 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH 237 >gi|223984078|ref|ZP_03634232.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM 12042] gi|223963953|gb|EEF68311.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM 12042] Length = 234 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 115/230 (50%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ + ++IE+ LK++ + V+ G++G+E+ I+DL + + G + Sbjct: 6 ILVCEDEVEIGNAIEIYLKNQGYGVHRAYNGKEGLEVLARQTIHLAIVDLMMPVMDGLTM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + LR PV +LS S DK+ GL GADDYI+KPF EL+AR+ + +RR Sbjct: 66 IMTLR-QSYDFPVIVLSAKSEDMDKITGLNMGADDYITKPFTPMELLARVNSQLRRYAKF 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + G L +N D K V + G+ + LT E+++++LL + E Sbjct: 125 LSLKEHQSEDEQVYTVGGLELNNDTKEVSLDGNPVRLTPIEFRILQLLMKNPGRVYSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNEEAIATD-TVMVHIRNIREKIEIDPRNPRYLKVVWGVGYKIEK 233 >gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1] gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ASDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEEIPSSPTLIRTVRGVGYRL 221 >gi|206974598|ref|ZP_03235514.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206747241|gb|EDZ58632.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADMITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ ++ + D I+LD L G + Sbjct: 4 RILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 + R R P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA + R Sbjct: 64 LARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++ A V + + EY+++ T+ L+H+ Sbjct: 124 REDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + IDV I +LRK L +N ++TV G GY Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FNAENMVQTVRGAGYRF 225 >gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 126/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L + + V V GE G K ++D ++LD+ L ++ G Sbjct: 1 MRILLVEDDVRLAETLAEALTDQRYMVDVVTDGEAGWNQAKMLDYDLLLLDVMLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR S PV +L+ ++ DK+ GL +GADDY+ KP + +EL ARIRA++RR Sbjct: 61 SLCHRLRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G+L +N V + +HLT KEY ++ELL L++ + + H++ Sbjct: 121 VSSPPILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + V + LR+KL A +++IETV G GY L++ Sbjct: 181 LESPPEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRLKQ 223 >gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVIDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL ++ + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGSREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|325262811|ref|ZP_08129547.1| DNA-binding response regulator PhoP [Clostridium sp. D5] gi|324031905|gb|EGB93184.1| DNA-binding response regulator PhoP [Clostridium sp. D5] Length = 224 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ L I L++E++++ G ++ E+DA+ILD+ + + G Sbjct: 1 MRILLAEDEPDLNRLIMDKLRAEHYSMDSCRDGRAALDYLAAAEYDAVILDIMMPVVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + PV +L+ SIED+V GL +GA+DY+ KPF EEL+ARIR ++R R Sbjct: 61 TVLKKLRAQGKNIPVLLLTARDSIEDRVAGLDAGANDYLIKPFAFEELLARIRVLLRTPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL V LD V G +I L+GKE+ ++ + + L++E HL++ Sbjct: 121 DTGGVCCRVDDLEVRLDTHEVSRGGKQITLSGKEFALLRYMIQNEGIVLSREKMEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +IDV+I LRKK+ + I TV G GYVL+ Sbjct: 181 YDYPGGSNVIDVYIRYLRKKV-DEGYETKLIHTVRGTGYVLK 221 >gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium kansasii ATCC 12478] Length = 254 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V + G + I + D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 89 QILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ A I TV G GY+LR Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DADRDPMIHTVRGIGYMLRP 252 >gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 236 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 HVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVTTLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLRVES 236 >gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T17] Length = 289 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 1/215 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 1 MRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 61 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 121 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215 E I+DV+I LR K+ + G +ET+ Sbjct: 181 AAYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIR 214 >gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++E+ + G++G++ K E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++L+ ++V + L KE+ ++ + + LTK+ Sbjct: 122 FNQQAGTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|183984426|ref|YP_001852717.1| two-component transcriptional regulator TrcR [Mycobacterium marinum M] gi|183177752|gb|ACC42862.1| two-component transcriptional regulator TrcR [Mycobacterium marinum M] Length = 254 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V + G + I D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 89 QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ A + I TV G GY+LR Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DADREPMIHTVRGIGYMLRP 252 >gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G + E+D ++LD+ L G+ Sbjct: 2 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+RR + Sbjct: 62 TLLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 121 PRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 181 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 221 >gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 240 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 13/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + L F V D GE + L D ++LDL L + G EV Sbjct: 13 ILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDGGEV 72 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +ALR P+ +L+ ++ GL GADDYI+KPF+ + LVAR++A +RR R Sbjct: 73 CKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRRGR 132 Query: 121 GHAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A G + ++ V V G + LT E+ ++ELL+ R +++ Sbjct: 133 EVAGEEGGAGGVLRLEAAGLVIDPGRYQVLVAGEPVFLTLSEFGILELLARRPGWVFSRQ 192 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + LRKKL A G IETV G GY L+ Sbjct: 193 QIIDAVRGYDYAITPRAVDVQVFGLRKKLGAAGG---CIETVRGVGYRLK 239 >gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator [Actinomyces oris K20] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + LK+ F + T G + L +FD IILD+GL DI GFE Sbjct: 3 RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR + PV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R Sbjct: 63 VLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D+ ++L A+T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 123 APDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL +ETV G GY L Sbjct: 183 LDFDPGSNVVEVYVSYLRNKLGR-----QRVETVRGMGYRL 218 >gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system with QseC [Edwardsiella tarda EIB202] gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system with QseC [Edwardsiella tarda EIB202] gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda FL6-60] gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda] gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F + G+ G+ + +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 61 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ ++V I LR+KL + +I TV G GY L ++ Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSH-----FIRTVHGVGYTLGDS 219 >gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC 29473] gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC 29473] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + + L + I+LDL L G + Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYQTQWLVNGAEVVALVRQSPPAIILLDLMLPGSNGISI 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 74 CREIR-QFSDVPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L ++ G+ + LT E+++++ L+++ T+E LN+LYD Sbjct: 133 RDVPTDRAPLQIDESRFHASYHGNTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL + K +I V+G GY Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDEEKAFIRAVYGIGYRWEAE 234 >gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1] gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSQEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC 11568] gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC 11568] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A ++ L V G G+ + +D ++D + + G Sbjct: 1 MRILVVEDDAEAATAMVRGLSEAGHEVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R TPV LS + +ED+V GL++G DDY+ KP+ ELVAR+ A+ RR Sbjct: 61 AMVETIRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRE 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL +NL A+TV G I L +E+Q++E L ++T+ M L ++ Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR K+ + K ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDKAMLQTVRGAGYRLE 222 >gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913] gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DDK L +E L + F V + L + F ++LDL L G Sbjct: 7 KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDYI KPFN EL+ARI+AI+RR Sbjct: 67 ICRRLRQKENQIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRQSK 126 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +LI G ++NL + + + + LT E+ +++ L L+++ Sbjct: 127 EVPGAPSAEENLIKFGKFTLNLATREMSEGDNTVSLTSGEFAVLKALVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + A YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVFVPDGE 238 >gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + I+ L FNV G+ G +DA++LDL L +I G Sbjct: 1 MRILLVEDDRLIGDGIKAGLSKMGFNVDWFTDGKTGQAALYTAPYDAVVLDLTLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LRA R + S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 61 EILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+S + G + ++ + ++G + L KE+ ++ELL L ++ LY+ Sbjct: 121 GQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 218 >gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 231 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I +L+ E + V G++ I + FD IILD+ L DI G + Sbjct: 5 KILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPDIDGID 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + T + + + + DK+ GL+ GADDYI+KPF+ EL AR++A +R+ + Sbjct: 65 VCRKIRDKFLGTIIFL-TAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRKQKR 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I + +N ++ V V RI L+ KE+Q++ + N LT+E Sbjct: 124 LNSLNLKNDETIRYKSIEINKNSFEVFVDRQRIILSTKEFQVLYYMIENHNIVLTREQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ D ++ + V I KLR+K+ G +I+TVWG GY Sbjct: 184 NSVWGFGDFGDINTVTVHIKKLREKI---PGCDRFIKTVWGIGYKF 226 >gi|226315467|ref|YP_002775363.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098417|dbj|BAH46859.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 237 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K++ +E +LK E F +Y ++ + L E D IILD+ L D GF Sbjct: 5 KILIVDDEKSIIQLLETVLKKEGFRHIYTAGTAQEALRLLAKNEVDIIILDVMLPDQSGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R + + + + +S D + G G DDY++KPFN E+VAR +A +RR Sbjct: 65 DLCPQIREISSAYIIYL-TARASDLDVLSGFAIGGDDYVTKPFNPLEIVARTKAGLRRGV 123 Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G ++ + V G + + YQ++ L N +K Sbjct: 124 LMPVQHAEETRRRYDFGGFVLDEYEGELLVGGEAVPCPAQAYQLLLYLCKNPNMVFSKAQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I K+R+++ + G Y+ TV G GY L + Sbjct: 184 LYEAVWGIDGMGDDNTVMVHIHKIRERIESDLGAPRYLVTVRGLGYKLIKE 234 >gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36] gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E V + G +G+ +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR A TPV L+ M S++D++ GL +G DDY+ KPF EL AR+ A R Sbjct: 61 TLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ GDL + L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ I +LR K+ + + I+TV G GY + Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFDRELIQTVRGAGYRI 221 >gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 247 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ ++ +E L + V G + ++ E D ++LD+ + + G+ V Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 71 IQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I ++ + + V RI LTG E+ ++ELL R ++ L Sbjct: 130 QIAGLPNSGVIQVAAFRIDTNRRKVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189 Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++DV I +LR KL + I T G GY+ + Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237 >gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+++E L L +E + ++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 232 >gi|325663729|ref|ZP_08152133.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470222|gb|EGC73455.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium 4_1_37FAA] Length = 231 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DDK + +IE+ L+ E +NV G++ I++ E D +I+D+ + + G Sbjct: 4 VLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEVDLLIIDVMMPKLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K S P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 64 TLKIR-EKNSLPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRRYTQL 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ G L ++ + K V V G I LT EY ++ LL + + Sbjct: 123 GSTVIEKKSSVFTVGGLKIDDELKEVTVDGDVIRLTPIEYNILLLLVKNQGKVFSINQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 ESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230 >gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum UT26S] gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum UT26S] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A A + + F V D G DG+ L + AIILD + + G Sbjct: 4 KILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPAMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ALR A+I TPV ILS + + ED+V GL SGADDY++KPF EL+AR++ ++RR G Sbjct: 64 MLKALRAAEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGGG 123 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++L ++ V+ + L +E++++E + +T+ M L ++ Sbjct: 124 GGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEGVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P +IDV + +LR+KL + G + + TV G GY L + Sbjct: 184 DYHFDPGTNVIDVHVSRLRRKL-DDGGDRPLLHTVRGMGYRLGPES 228 >gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 123 ASDSATFGTLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ I TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEEVPSSPTLIRTVRGVGYRL 221 >gi|310779378|ref|YP_003967711.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748701|gb|ADO83363.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++DD + + I+ +L+ EN + V G++ L FD IILD+ L D Sbjct: 1 MKSHEILIVDDDIKICNLIKEVLEPENISTTVATTGKEAQSLLISKTFDLIILDIMLEDT 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF+++R ++V KI TP+ L+G DK+ GADDYI+KPF+ L+AR++A +R Sbjct: 61 DGFQLMRNIQVEKIDTPIIFLTGKQQDYDKILAFGMGADDYITKPFSVSVLIARVKAHLR 120 Query: 118 RSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R + +V +NLD + G I L+ KE ++++ N TK+ Sbjct: 121 RGDRVKELQLSSKKLVKEPFILNLDTYQLFKNGKEIFLSAKEIKIMKFFMENPNIIFTKD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + + V+I LRKK+ + Y++T WG GY Sbjct: 181 QLYEKIWN-DVFIDNNSVRVYILNLRKKIEDNPQKPKYLKTAWGIGYKF 228 >gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + ++ +LK + V G + + L + FD I+LDL L + G E Sbjct: 3 KILIVEDDPKINKMVQTLLKKNEYEVVAAFSGTEALLLLEKESFDLILLDLMLPGLSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L + P+ +S + K+ ++ GADDYI+KPFN EEL+ RI A++RR Sbjct: 63 ILV-KINEQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121 Query: 122 HAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L V + I LT KEY ++ELL TK+ Sbjct: 122 GMTIDKTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFES 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ V + LR KL + G+ YI+TVWG GY +++N Sbjct: 182 VWSEEYIMDERVVTVHVSNLRNKLKH---GEEYIKTVWGIGYKMQDN 225 >gi|228940323|ref|ZP_04102894.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973239|ref|ZP_04133828.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786435|gb|EEM34425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819449|gb|EEM65503.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940961|gb|AEA16857.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFQVFEAEDGKVAQDVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|225414555|ref|ZP_03761744.1| hypothetical protein CLOSTASPAR_05778 [Clostridium asparagiforme DSM 15981] gi|225041911|gb|EEG52157.1| hypothetical protein CLOSTASPAR_05778 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + + +++ L+ + + E+G+ K I D L + G + Sbjct: 3 RIYIIEDDENIRNLLQIALEGFGYQAESFETAEEGLARMKEEPPSLAIFDWMLPGMDGIQ 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ +R + PV +L+ DKV GL GADDY+ KPF EL AR+R+++RRS Sbjct: 63 AIKEVRRTEGLKDLPVMVLTAREKELDKVVGLDCGADDYMVKPFGVLELSARVRSLLRRS 122 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R +S + VN + V G + LT KEY+++ L + +T++ LN + Sbjct: 123 RREDRSDELAFDGIRVNRRTREVNSGGRPVELTLKEYELLMYLLENCSRVVTRDELLNRI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + E + +D+ I LR+KL G I TV G GY + + E Sbjct: 183 WGYGYDGETRTLDMHIRTLRQKLGADGGA--CIRTVRGVGYRMVKPETGENA 232 >gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L+S+ ++V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ GDL ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 APERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227 >gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +LA + + L+ E + V G + + + DA+ILD+ L D+ G Sbjct: 23 RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLS 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 83 LLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 142 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 V GDL+++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 143 ALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG I T G GY+++ Sbjct: 203 WSYDFGGQANVVELYISYLRRKI--DAGRAPMIHTRRGAGYLIKP 245 >gi|296445086|ref|ZP_06887047.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257507|gb|EFH04573.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+ E + V G ++ + D I D+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGAAALDGLRANPPDLAIFDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++AI+RR+ Sbjct: 64 LRRLR-QKSDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRANPK 122 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L ++ + T +G + LT E+ +++ L+ R ++ Sbjct: 123 EAAAQKESEAKVLERGALVMDPERHTCTWRGDPVVLTVTEFLILQALAQRPGVVKSRNAL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK A IET++G GY +E Sbjct: 183 MDAAYDDQVYVDDRTIDSHIKRLRKKFKVADSEFEMIETLYGVGYRFKE 231 >gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 220 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I L E + V G + FDA++LDLGL + G Sbjct: 1 MRLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I + ++ + V G + LT KEYQ++ L +T++ + LY Sbjct: 121 GRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E ++V I LRKK I TV G GY++ E Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSELIRTVRGVGYLVEE 218 >gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ + + + + ++ F V + G +++ D ++LDL L G EV Sbjct: 6 VLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDGLEV 65 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + PV +L+ D++ GL+ GADDY+ KPF+ EL+ R +A++RR + Sbjct: 66 CRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRGK 125 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G L V+ V V G LT E++++ L + T++ LN + Sbjct: 126 PQPEEETLWESGGLRVDFGTYKVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +D + +LR K+ A +ETV G GY L Sbjct: 186 WGYEFEGYARTVDTHVRRLRHKIEPYAA---IVETVRGVGYRL 225 >gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ +L+ ED+ A++ + LK E+++V + GE+ + + D ++LD L + Sbjct: 1 MKPYVLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVS 60 Query: 59 GFEVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G E+ R +R + P+ +L+ D++RGL +GADDY++KPF+ EL+AR+RA++ Sbjct: 61 GIEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVL 120 Query: 117 RRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR R + I GD+ ++ A V IHL E+++++ ++E L Sbjct: 121 RRIRPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ E + +DV + +LRK L +GG++ I TV GY LR + Sbjct: 181 DTVWGSDVYVEARTVDVHVGRLRKALRQ-SGGEDPIRTVRSAGYALRAD 228 >gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 240 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + ++ L +E ++V + G D + + + A +D+ L + GF Sbjct: 1 MKLLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLPGMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + + P+ +L+ +IED+V GL SGADDY++KPF EL AR+RA++RR Sbjct: 61 ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ G L+++ V GH + L+ +E+ ++ L + + TL++ L ++ Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +ID ++ LRKKL + AG I T GRGY L Sbjct: 181 TTENIGTNVIDQYVSYLRKKL-DVAGAGLSIVTERGRGYRL 220 >gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733] gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733] Length = 218 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A+ + L+ + VY G++ ++ + EFD ++LD+ L +I G+ Sbjct: 1 MKILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + + PV L+ + D+V GL+SGA+DYI+KPF+ EEL+AR+ ++RR+ Sbjct: 61 EVFAY--MWEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 118 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + + +N + V + + LT KEY+++ L K L +E ++ Sbjct: 119 KNDSNKLLKWQYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKGIILPREKIYQKIW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +EP + +D+ I ++R KL + T++G GY+L Sbjct: 179 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLLE 217 >gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 266 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A++++ L+ F V V G G L +D +ILDL L G+E Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V +R + P+ +L+ + ++DK++ + GADDY+ KPF+ EL+ARIR ++R Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + Q IV GDL ++ + K V G +I LT KEYQ++E L+L K ++K + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + +I+V++ LRKK+ + T G GY L E Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDN-KLLHTKTGMGYYLAEE 266 >gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ ++ + D I+LD L G + Sbjct: 4 RILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 + R R P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA + R Sbjct: 64 LARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + ++ A V + + EY+++ T+ L+H+ Sbjct: 124 REDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + IDV I +LRK L +N ++TV G GY Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FNAENMVQTVRGAGYRF 225 >gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++ + H I L L+S+ + ++ + D ++LD+ + ++ G Sbjct: 1 MKILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKIEE-RPDLVLLDIMMPEVDGI 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R L+ + PV +L+ S E ++GL +GADDY++KPF+ L+ARIRA++RR+R Sbjct: 60 SLCRQLKTMDPALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVLRRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L + ++ V + I LT K +++L N + + ++ Sbjct: 120 VVNIQY---GPLRYDEESGRVLYEEQEIVLTPKATAILKLFLQHPNRLFNRLDLFDLVWP 176 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLREN 224 E + + +D I +R+KL +A +Y++TVWGRGY E Sbjct: 177 YSAESDPRTVDAHIRMIREKLGDAGFPIDDYLKTVWGRGYRWTEE 221 >gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5] Length = 245 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 115/240 (47%), Gaps = 22/240 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++++D+ + I ++L+ E +++ G + +E+ + FD IILD+ + + G++ Sbjct: 5 RIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIMMPGMNGYQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ LS DK G SG DDY+ KPF+ ELV+R +A++RR + Sbjct: 65 TCLEIRKQ-SNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRRYQI 123 Query: 122 HA--------------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 + + + DL ++ + + V +G +I LT EY M+ LL Sbjct: 124 YKGKENSETVSEQVICTGNTQEKQRLHFHDLEIDEEQEAVYAEGRQIELTDTEYAMLHLL 183 Query: 162 SLRKNTTLTKEMFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + E ++D I V I LRKK+ A I+T+WG+GY Sbjct: 184 IKYRHQIFSAERLYEAVWDEPYYYGANNTIMVHIRNLRKKIEKDAKNPVLIKTIWGKGYR 243 >gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 234 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 17/237 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV +R + PV +++ + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGYEVCGKIRKRTST-PVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119 Query: 118 RS---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 R+ A + G ++V L + V V G + LT KE+ ++ LL+ R Sbjct: 120 RTGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVV 179 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++ ++ E + ++V + LR KL G IETV G GY L A Sbjct: 180 FRREQIISEVWRTSWEGTGRTLEVHVASLRSKL----GMPALIETVRGVGYRLVTPA 232 >gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] Length = 240 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ I L+ + + E + + D I+LD L ++ G + Sbjct: 4 KILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMTGID 63 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 R LR P+ +L+ + DKV GL+ GADDY++KPF+ EL+ARI A+ R Sbjct: 64 FARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRRL 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ L ++ V I L EY+++ + T ++ L+ + Sbjct: 124 IPEASAQVVEIHGLRLDPVNHRVTDGNKEIELGPTEYRLLHFMMSHTERTYSRSQLLDRV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++I+TV G GY Sbjct: 184 WGDHVFVEERTVDVHIRRLRKAL-QWSGKDSWIQTVRGAGYRF 225 >gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 12/233 (5%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 ++D+ ++ +E L + V GE+ I + D ++LD+ + + G+ V + Sbjct: 2 VDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQE 61 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR + Sbjct: 62 LRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMP 120 Query: 126 LI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I + ++ + + V RI LTG E+ ++ELL R ++ L ++ Sbjct: 121 GIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVW 180 Query: 180 DG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227 + +++DV I +LR KL I T G GY+ + E ++ Sbjct: 181 GYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQRILEPGEE 233 >gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 10/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ + + L+ + V V G +GI + +D I+LD+ L I GF Sbjct: 3 KILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIMLPKIDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R PV +++ +SS E++VRGL ADDYI+KPF+ L+ +I A++RRS Sbjct: 63 VCELIRKESNI-PVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRRSGR 121 Query: 122 HAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A++ + +L V G + LT +E++++ L + +T+E+ L Sbjct: 122 GAKAGENQKLIYRDLCLDLDNYQTFVDGEPVALTKREFEILRELLNHQGKVMTREILLEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ +++D I LR+KL YIETV G GY + Sbjct: 182 LWKYEFYGNDRVVDNHIKNLRRKLERD-----YIETVKGIGYRI 220 >gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD ++ + L L+ F V + G G+ + D I+LDLGL D+ G E Sbjct: 6 HILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPDLSGAE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R STP+ IL+ + KV L +GADDY++KPF+ EEL+ARIR +R Sbjct: 66 IARRVR-KTSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLR--HQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +A S GD+ ++++ + + I L+ +E+ ++ L T++ +++ Sbjct: 123 NAGSAQTVGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P ++DV I +R KL AGG I TV G GY ++ Sbjct: 183 ELPPSSNVVDVHIANIRAKL-RDAGGYGLIRTVRGIGYAIK 222 >gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] Length = 234 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRAKSNV-PIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +NL +V V G + + KE +++ L+ N T+E Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + +DV I +LR+K+ + + + TVWG GY Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSTWG--LSTVWGIGYKFE 232 >gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8] gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8] Length = 237 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + + L+ E + V+ GE+ +E + D I+LD+ L + G+EV Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR P+ LS + ED++ GL G DDY++KP + + LVA ++A++RRS Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSG 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ L + D E+ G + LT E++++ L T++ L ++ Sbjct: 131 VEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIWK 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + +D I LR+KL + A I+TV G GY + ++E+ E Sbjct: 191 DAMMVTERTVDAHIKNLREKLGDFAKH---IQTVRGVGYRFVQ--EEESAE 236 >gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] Length = 218 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+AL I LK E + V G + F+ ILDLGL + G Sbjct: 1 MRILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ L+ A PV +L+ + D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + + ++ ++ VE QG I+L KE+ ++ L ++ LT++ LY Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E ++V + LRKK I TV G GY Sbjct: 181 WDEEVESNALEVHVHHLRKKF-----FPELIRTVRGVGY 214 >gi|260772762|ref|ZP_05881678.1| two component response regulator [Vibrio metschnikovii CIP 69.14] gi|260611901|gb|EEX37104.1| two component response regulator [Vibrio metschnikovii CIP 69.14] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K ++ L F V + G DG+ L E+D +ILD+ L + G+ Sbjct: 1 MKILIVEDEKKTGDYLQQGLSEAGFVVDLVRDGIDGLHLALTGEYDLLILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A+ PV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R + RR + Sbjct: 61 GVLKTIRRAEYHMPVLFLTARDAVEDRVHGLELGADDYLIKPFAFSELLARVRTLSRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+++L + V G RI LT KE+ ++ELL R+ L++ + ++D Sbjct: 121 TQKIDHLQAADLALDLVKRRVIRNGQRIDLTAKEFILLELLLRRRGEVLSRSFIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+V + +LR K+ + I TV G GYVL + Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DDPFEPKLIRTVRGMGYVLEVDE 224 >gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 223 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + I+ L FNV G +G+ +DA++LDL L +I G Sbjct: 1 MRILVIEDDRLIGDGIKAGLIKLGFNVDWFTQGREGMNALTSAPYDAVLLDLSLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV +++ ++E +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ G ++++L ++ V G + L +E ++EL + LT+ LY Sbjct: 121 GQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRNQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V I LR+KL N +I TV G GY L Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGNH-----FIRTVHGVGYTL 216 >gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001] gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001] Length = 240 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +++DD L ++ L + + V G+ + D ++LDL L G Sbjct: 6 RIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLMLPGDDGLC 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +LR LR PV +L+G D++ GL+ GADDY++KPF EL ARI A++RR Sbjct: 66 LLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRGS 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S I G ++ ++ +E QG + +T E+ ++ + + L++E Sbjct: 126 GPAGAPQAEASPIPFGAWVLHPSSRQLERQGQPVSITSGEFSLLLAFAQHPHRPLSRERL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + + +DV + +LR+ + + +I+TVWG GYV + + Sbjct: 186 IELSRGPTSDTDARSMDVQVSRLRRLVEDDPSQPRHIQTVWGYGYVFVPDGQ 237 >gi|169347039|ref|ZP_02865981.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169296722|gb|EDS78851.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++D++ + +E LK E F+V+ GE+ +++ + D I+LDL L D+ G Sbjct: 1 MNILLVDDEEKIIEVLEAYLKKEGFSVFSCSNGEEALKIFDNNKIDLILLDLMLPDLSGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ +++ + ED + G GADDY++KPF+ ++L+ARI+AI+RRS Sbjct: 61 EVCKVIRAKSCV-PIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRST 119 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G+L +N+D + V V+ I LT E+ ++ LS T+ + Sbjct: 120 PCPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRGEII 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ++ID I LR K+ +I TV+G GY Sbjct: 180 ELVLGDKSDSFDRVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFE 226 >gi|218898303|ref|YP_002446714.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901739|ref|ZP_04065911.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228966150|ref|ZP_04127212.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542653|gb|ACK95047.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228793519|gb|EEM41060.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228857871|gb|EEN02359.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKIAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae F3031] gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3031] Length = 220 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L + F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+ LQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + G + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 YHHSVIEQAG-VKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 180 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 215 >gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F+V G +G ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + LR++ PV +L+ ++ DK RG + G DDY++KPF EEL+ RIRA++RRS Sbjct: 61 FELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGIGYKLEE 223 >gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ ++SE+ + G++G++ K E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L ++L+ ++V L KE+ ++ + + LTK+ Sbjct: 122 FNHQAGAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ L SI L+ + G +G+ELC +D I+LDL L G Sbjct: 1 MHILIIEDEEQLCCSIAEGLRMNGYETDTCFDGNEGLELCMTESYDLILLDLNLPGTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R + +TPV ILS I+DKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 DILQQFRTSDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + + + V + LT KE ++E L + ++ E + HL+D Sbjct: 121 IQEDICLKCGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEMIEHLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G I V I LRKKL AA G + I+ G+GY+L E Sbjct: 181 GSVNSFSNSIRVHISSLRKKL-RAALGFDPIQNKIGQGYILMEE 223 >gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica serovar Typhimurium] gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi] Length = 239 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIR ++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|296450961|ref|ZP_06892708.1| response regulator [Clostridium difficile NAP08] gi|296879073|ref|ZP_06903069.1| response regulator [Clostridium difficile NAP07] gi|296260179|gb|EFH07027.1| response regulator [Clostridium difficile NAP08] gi|296429946|gb|EFH15797.1| response regulator [Clostridium difficile NAP07] Length = 244 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + +LD+ L DI G Sbjct: 16 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + +DK+ G SGADDYI KPF+ +EL+ R+ A++RR Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRVA 135 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + +S ++D + + G I LT E+ +++ L +L+++ L+ Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKEE 244 >gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 243 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA +IE L+ E + V G +E L + DAI+LDL L DI G E Sbjct: 13 ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + + PV +++ + D+V G + GADDY+ KPF+ EL+ RIRA++RR+ Sbjct: 73 ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRRT 132 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I L V+ + V V I LT E++++ R+ T++ L+ Sbjct: 133 ERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALLSD 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + + +D + +LR+KL +A Y+ET+ G GY R+ E E Sbjct: 193 VWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFRDRPIGEPDE 243 >gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + ++ ++ ENFNV GE+ + Y ++LD+ + I G EV Sbjct: 5 ILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPLIDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K +TP+ +++ S DK+ GL SGADDYI KPF+ E+VARI+A++RR Sbjct: 65 CNRIR-EKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRITPV 123 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + + ++++ +V++ G I+LT KE +++ +L+ N + ++ L++++ Sbjct: 124 ENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDNIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I ++R KL+ I+T+WG GY Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLALNGQYSWDIKTIWGMGYKFE 226 >gi|118619706|ref|YP_908038.1| two component transcriptional regulator TrcR [Mycobacterium ulcerans Agy99] gi|118571816|gb|ABL06567.1| two component transcriptional regulator TrcR [Mycobacterium ulcerans Agy99] Length = 257 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V + G + I D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 151 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 152 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ A + I TV G GY+LR Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DADREPMIHTVRGIGYMLRP 255 >gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L++ED++A+ + L+L+ +F V + + E D I+LD L + G Sbjct: 4 INVLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGV 63 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E R L+ + P+ +++ EDK+RGL GADDY++KPF+ EL+ARIRA++RR Sbjct: 64 EWARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRR 123 Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + I G + ++ D + + ++L+ EY+++E + ++ L+ Sbjct: 124 SNRQSKLDGRIEIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I +LRK LS + I+TV G GY Sbjct: 184 QVWGRSAYIEERTVDVHIRRLRKILSEHDRE-DMIQTVRGFGYRF 227 >gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 227 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDD +++ + +L + G + + + + I+LDL L + G Sbjct: 4 INILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLMLPGMSGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LR T V +S K+ L++GADDYI+KPFN EEL+ARI A++RR+ Sbjct: 64 EVLKSLR-QTSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRRNS 122 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+ + L++N V ++G + LT +EY+++ELL +K + Sbjct: 123 GNTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSKNVIYET 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ E I+V I LR+KL+ + YI+TVWG G+ ++ Sbjct: 183 VWEDLFLGEDNAINVHISNLRQKLAKIDPDEAYIQTVWGIGFKMK 227 >gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++A+A + L+ NF V + GE G++ +D ILDL L I GFE Sbjct: 3 RILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +++ DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 LCKRIR-EVKNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 QS + D ++ ++ V + G T KE+ ++ L+ N +KE Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + V + K+R+K+ YIET+WG GY + Sbjct: 182 ETLWGEESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRFK 228 >gi|253583358|ref|ZP_04860556.1| DNA-binding response regulator [Fusobacterium varium ATCC 27725] gi|251833930|gb|EES62493.1| DNA-binding response regulator [Fusobacterium varium ATCC 27725] Length = 226 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK + I L E + V G +G++L K + + ++LDL L ++ G Sbjct: 1 MRILVVEDDKEIQELITYFLIKEGYEVDRASDGLEGLKLLKENKNELVVLDLMLPNLDGK 60 Query: 61 EVLRALRV---AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 + +R + +L+ + IED + GL+ GADDY+ KPF+ ELV RI+ ++ Sbjct: 61 NFTKIVRDISSEYGEPVIIMLTAKTEIEDVLDGLEIGADDYMKKPFDPRELVLRIKKFLK 120 Query: 118 RSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ ++ V G + L+ KEY ++ LL K+ +T+E L+ Sbjct: 121 TTDREIKNERYRFKDIEIDESRHIVIANGEEVELSKKEYDLLLLLVKNKDLVITRERILD 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +DV+I KLR K+ I+TV G GY L E Sbjct: 181 KVWNSNYYTGDRTVDVYISKLRDKI---PELSECIKTVKGVGYKLEE 224 >gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271] gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271] Length = 247 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 29 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR Sbjct: 89 ICKIMRGQSDV-PIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +V++ID I LRKKL YI+TV G GY + Sbjct: 208 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 246 >gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 269 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +L +++ L+ E + + + G + + ++ DA++LD+ L D+ G Sbjct: 43 IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR PV L+ S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 103 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 162 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL+++ D+ V G I LT E++++ L L+K L+ Sbjct: 163 LVVSDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 222 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG I TV G GY+L+ Sbjct: 223 RVWSYDFGGKSSVVEIYISYLRRKI--DAGRNPMIHTVRGSGYMLK 266 >gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] Length = 228 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +++ + + + ++ D ++LD L G + Sbjct: 4 RILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + ++ + P+ +L+ EDKV+GL+ GADDYI+KPF+ +EL+AR+RA+ RR Sbjct: 64 LAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFRRV 123 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L ++ + + V I + E++++ ++E L+H+ Sbjct: 124 APTVLDEPLEVEGLKLDPVSHRISVDDKGIDMGPTEFKLLHFFMTHPERVYSREQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L+ G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALTEH-GYDRLIQTVRGVGYRF 225 >gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae 86-028NP] gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae 86-028NP] Length = 221 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSASYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX] gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX] Length = 219 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A + L + F V D I+ FD ++LDLGL D GF Sbjct: 3 RILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGLPDADGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR P+ IL+ S+ D V GL++GADDY++KPF EEL+ARIR +R + Sbjct: 63 VLRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAHN 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ GDL+++L + + LT +E+ ++EL L+++ L+H++ Sbjct: 123 AETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DVFI LRKK+ IET+ G GY L Sbjct: 183 DYDPGSNVVDVFIRALRKKIGAH-----RIETLRGMGYRL 217 >gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium) chloroplast gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium] gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium] Length = 255 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ ++ +E L + V G + L + ++LD+ + I G+ Sbjct: 9 KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 69 VCQEIRKE-SDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 127 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S G L ++++ K V RI LTG E+ ++ELL L++ Sbjct: 128 FYFSNTFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTI 187 Query: 175 LNHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ E + +++DV I +LR KL + I T G GY+ + Sbjct: 188 LEEVWGYTPERHLDTRVVDVHISRLRAKLEDDPSNPELILTSRGTGYLFQ 237 >gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ A + L F V + G DG L +D I+LD+ L G+ Sbjct: 1 MKILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLPGADGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ +R K PV L+ + D+VRG + GADDY+ KPF EL+ARIR +R+S Sbjct: 61 SVIKMIR-QKSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSS 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + GDL +++ + V G ++ LT +E+ ++ LL+ R L++ +H++D Sbjct: 120 GRESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV I +LR KL + I TV G GYVL + Sbjct: 180 VNFDTDTNVVDVAIRRLRAKL-DEPFDTKLIHTVRGMGYVLDPH 222 >gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 232 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 4/228 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ + P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPAQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGRETEQIEFGDLVINHVTHEVRIGDQPLELTVKSFELLWVLASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224 ++ + ++V I LR++L+ I+TVWG GY + + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKMEKP 228 >gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 225 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 61 FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] Length = 231 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED++ L + + F+V GE + K FD ++LDL L D+ G E Sbjct: 4 HVLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMSGTE 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R L+ + PV +++ D++ G + GADDY+ KPF+ EL+ R RAI++RS Sbjct: 64 ICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRS 123 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A G L V+ A VQ I LT E++++ +L R+ L++++ L+ Sbjct: 124 ESPASAPEKFDFGILRVDRAAHRAWVQEAEIALTALEFRLLMMLYDRRGRVLSRDLLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + +D + ++R+KL A +YIETV G GY R + Sbjct: 184 VWGSHVDVTARNVDTHVKRVREKLGAAG---DYIETVRGVGYRFRAEPE 229 >gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] Length = 230 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+ A + L++E F + GE + L + D ++LD L ++ G E Sbjct: 8 HVLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIE 67 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R R + +LS S DKVRGL++GADDY+ KP++ EL+AR+R +RR Sbjct: 68 VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 127 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + D ++ + V + L E++++ + +++ L+ + Sbjct: 128 RPSTVGQVLTFEDFVLDAETHRVTRADKPLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV I +LRK L A GG + + TV G GY L Sbjct: 188 WGRDIYVDTRTVDVHIGRLRKAL-TAHGGSDPVRTVRGAGYAL 229 >gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 240 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ ++ + L + + VY G ++L ++ D +ILDLGL D+ G +V Sbjct: 4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 + +R + P+ +LS KV+ L +GADDY++KPF +EL+AR+RA I R Sbjct: 64 IGGVRG-WSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ I+T D +++L KTV I LT E+ ++++L+ +T L+ ++ Sbjct: 123 SAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGP 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + V++ +LR+KL Y+ T G GY L Sbjct: 183 TYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLV 223 >gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V + + GE G++ +FD +ILDL L I GFE Sbjct: 3 RILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKVR-EVKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ A+ V + G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family [Planctomyces brasiliensis DSM 5305] Length = 228 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++++ ++ L+ + F+V G+DG+ + D I+LDL L G EV Sbjct: 6 ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVTDGLEV 65 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 R LR + +L+ S D++ G GADDY++KPF + L++R++A++RR Sbjct: 66 CRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRRPS 125 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++Q ++ +SV+ V + + LT E++++ L + + ++ Sbjct: 126 AKSNSQDIVTCRGISVDRMNHRVTLNNEEVLLTPTEFKLLWTLVRQSGRPFRRNELMDTC 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IDV I LR+KL + + IETV G GY R Sbjct: 186 RGEDANALERTIDVHIRSLRQKLDD---HADLIETVRGVGYRFRPE 228 >gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 230 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + ++L L++E + V G++ +++ + +LD+ + ++ GF Sbjct: 4 KILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVMMPEMDGFH 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV I+S + DK+ GL GADDY+ KPFN E VAR+R+ +RR Sbjct: 64 VLKEMR-KNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHA 122 Query: 122 HAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 L + + +A + QG +I LT E +M+EL TKE Sbjct: 123 LKGDLQPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ I V I KLR KL + YI TV G GY + + Sbjct: 183 YEYVWGDTYVVADNNIMVAISKLRSKLCDDPSA--YIRTVRGLGYRMEKE 230 >gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + L +E + G++ + + + +ILD+ + ++ G Sbjct: 1 MKILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK+RGL +GADDY++KPFN E++AR+++++RR+ Sbjct: 61 MQVVKELRKESQI-PIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A S L +N D+ V + G+ I LT E+ ++ LL+ N + + Sbjct: 120 KMQAPSNQPDILEVSSLIINRDSHEVKTITGNEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKI 226 >gi|256785613|ref|ZP_05524044.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 221 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +LIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R P+ +L+ + D V GL+SGADDY+ KP L ARIRA++RR + Sbjct: 61 RRIR-RTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERES 119 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 120 TDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHDY 179 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 180 LGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 220 >gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196] gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291] gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196] gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291] Length = 244 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + +LD+ L DI G Sbjct: 16 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + +DK+ G SGADDYI KPF+ +EL+ R+ A++RR Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + +S ++D + + G I LT E+ +++ L +L+++ L+ Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKEE 244 >gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 12/231 (5%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57 MR +L+++DDK ++ I + L++E + V GE+ ++ D +ILD+ + + Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + R +R S P+ +LS S DK+ GL +GADDY+ KPFN EL R++ ++R Sbjct: 61 NGIDTCRRIR-ENSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLR 119 Query: 118 RSRGHAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS + L + N V GH I LT +E++++ LL+ + + Sbjct: 120 RSTQYNVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + V I LR KL G I+TVWG GY + Sbjct: 180 AEDIFQQVWKEKYYVSNNTVMVHISNLRDKLEKELGY-KLIQTVWGVGYKI 229 >gi|288961137|ref|YP_003451476.1| two-component system, OmpR family, KDP operon response regulator [Azospirillum sp. B510] gi|288913445|dbj|BAI74932.1| two-component system, OmpR family, KDP operon response regulator [Azospirillum sp. B510] Length = 233 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L + + V + G DGI C D +ILDLGL D+ G E Sbjct: 8 RILVVDDEPQIRKFLRISLSANGYEVVEAENGRDGIGACAERRPDLVILDLGLPDLDGQE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 V+ P+ +LS + DKV L GA DY+ KPF EL+AR+RA R + Sbjct: 68 VIS-AIHRTAPVPIIVLSVRAQEYDKVEALDRGAVDYVVKPFGVGELMARVRAVLRQRPA 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L ++L + VE G +HL+ KEY+++ +L+ + LT L ++ Sbjct: 127 DAEPPTSVTAGTLVIDLARRIVERGGAEVHLSRKEYELLAMLARHADHVLTHADLLREVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + V++ +LR+KL + I T G GY R Sbjct: 187 GPAHVHDTAYLRVYVKQLRQKLEDDPNLPVLIVTEPGVGYRFR 229 >gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 221 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A +V G + LT E++++ L +++ + HLYD Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKK+ IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGID-----MIETVRGMGYRMREPE 220 >gi|229156833|ref|ZP_04284920.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228626753|gb|EEK83493.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK RG SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 247 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L+ + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 23 RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLA 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 83 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 142 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A GDL+++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 143 AAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG I T G GY+++ Sbjct: 203 WSYDFGGQANVVELYISYLRRKI--DAGRPPMIHTRRGAGYLIKP 245 >gi|187933916|ref|YP_001884616.1| PhoP family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722069|gb|ACD23290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 231 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + I++ L EN+ V + G D I L K D I+LDL L D GF Sbjct: 1 MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ + P+ ILS + +K+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 EVIHEFQSINSEIPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +I G + + + + V + + T E+++I L+ Sbjct: 121 KAKAIGKSEVKNKTNDIIEKGFIKIIIPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+E L+ ++ + +D+ I ++R+KL G ++ I+T++G GY L Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---VGNEDVIKTIYGVGYRLE 230 >gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 6/219 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+A I L L+ + F V+V G G++ + A++LD+GL + G EV Sbjct: 5 VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLDGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A TPV ++ D++ GL+ GADDY++KPF+ ELVAR+R ++RRS Sbjct: 65 CRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRSGTG 124 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A G++ V +D + V + LT E+ ++ L +++ L+ ++ Sbjct: 125 APREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSAVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV + +LR KL +A+ I TV G GY Sbjct: 185 YTASSGARTVDVHVAQLRAKLGDAS----PIRTVRGVGY 219 >gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261] gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261] Length = 231 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +E+ K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G+L +N + V+V + LT K ++++ LL+ +K ++ Sbjct: 125 GETEVVSLGNLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + ++V I LR++L+ A + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASSETPTIKTVWGLGYKIEK 227 >gi|225872896|ref|YP_002754353.1| TcrA [Acidobacterium capsulatum ATCC 51196] gi|225793949|gb|ACO34039.1| TcrA [Acidobacterium capsulatum ATCC 51196] Length = 224 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 116/224 (51%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDD+ +A +E L+ + V VT G DG EFDA +LD+ L + G Sbjct: 1 MNVLLIEDDRRIAQLVERGLREDGHRVSVTHDGADGARRMLSGEFDAALLDILLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R TP+ +L+ + ++ + GADDY+ KPF E L+AR+ AI RR + Sbjct: 61 EVLERVRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G L+++ + V G +I LT K+ ++E+L R ++E + + Sbjct: 121 PQAPQMLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +DV+I LR KL + + + I T+ G GY + Sbjct: 181 SASAVKENTLDVYIHSLRTKLGDRSENRPLIRTIHGTGYTFVAD 224 >gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA] gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA] Length = 224 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L I L+ + F V GE + + A ILDLGL + G Sbjct: 1 MRILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGEAAWRELRTDAYVAAILDLGLPRMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R A I+ P+ +L+ +I D+VRGL GADDYI KP + EL AR+RA+VRR+ Sbjct: 61 DVLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + + + ++TV G + L+ +E+ ++ L L L++E LY Sbjct: 121 GHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHALMLNAGRVLSREQLEQCLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226 E ++V I LR KL + I TV G GY+L R+NA+ Sbjct: 181 WGQEVGSNSVEVHIHHLRVKLGSD-----LIVTVRGVGYMLPRDNAE 222 >gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 4343-70] Length = 229 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7] Length = 220 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I+ L E + V G + FD ILD+GL + GF Sbjct: 1 MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL SGADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI + ++ + V + LT KEYQ++ L +T+E + LY Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E ++V I LRKK I T+ G GY++ E + Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSTLIRTIRGGGYLVEERS 220 >gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] Length = 238 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + L+ E + V G DG+E K+ ++ ++LD+ L + G Sbjct: 4 RILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLNGKS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR +TPV I+S + + +V G + GADDY+ KPF+ EL+ RI AI++R++ Sbjct: 64 ILSELR-KTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++++ V V+ + LT KE+ ++ L+ + + Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDSEVLLTPKEFDLLLFLAKSPDKAFKRNE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L ++D +++ +D I ++RKK + I TVWG GY Sbjct: 183 ILRAVWDYDFYSDLRTVDTHIKRVRKKFDKISPKVAQMIVTVWGIGYKF 231 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A ++ L++E F + G D +E + D ++LDL L + G E Sbjct: 5 RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L A+ PV +L+ D++ GL GADDY++KPF+ LVAR+RA++RR Sbjct: 65 VCRRL-QAERPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIER 123 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L V+ A+ V ++G ++HLT E++++ L+ T ++ L + Sbjct: 124 ARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLERV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D + LR+KL + I T G GY L Sbjct: 184 WGWTAGAGTRTVDSHVRALRRKLGD-----EIIRTAHGVGYALEPP 224 >gi|167464606|ref|ZP_02329695.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 236 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M++L++ED++A+ + + LK + V + GE+ I L + + ILD+ L G Sbjct: 1 MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 60 Query: 60 -FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 F+V LRV + +L+ S DKV GL+ GADDYISKPF+ ELVARI A+ RR Sbjct: 61 GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 120 Query: 119 SRG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++++ G ++LD + + G I LT E+ ++ + N +++++ Sbjct: 121 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + KI+DV I ++R+K+ YIETVWG GY+ + + Sbjct: 181 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 230 >gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 220 Score = 173 bits (439), Expect = 1e-41, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + + L F E+ +EFDA++LDL L D G Sbjct: 1 MRVLIVEDDAVLRDGLTVGLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + +TPV +L+ + D++ GL +GADDY+ KPF+ +E+ AR+RA+VRR+ Sbjct: 61 DVLKSLRERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+LI L ++ + VE QG I L+ +EY ++ L + L++ LY Sbjct: 121 GRPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQIEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++E E ++V I LR KL I+TV G GY L + Sbjct: 181 WQEEVESNAVEVHIHHLRGKLG-----PGMIQTVRGIGYRLGDE 219 >gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L ++ G E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLMLPEMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +++ S DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLR-QRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSP 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + ++++ V V G + L KE++++ELL LT+ ++ Sbjct: 122 ETVESGTATLAAGPVRMDIERHVVTVDGSTVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ +I TV G GY Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEPEPSSPRHIVTVRGLGYKFEP 227 >gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ G Sbjct: 1 MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+ + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 61 FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 223 >gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8] gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8] Length = 236 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 13/229 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ L +E L+ E F V + G + +E + ++ D IILD+ + + G EV Sbjct: 13 ILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIEV 72 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + P+ +L+ + +DKV+GL GAD Y+ KP + +V++ +A++R + Sbjct: 73 CQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSAH 132 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + V+ D V + + KE++++ L+ +++ Sbjct: 133 RYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQEI 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ + +DV I K+R+K+ + YIETV G GY ++E Sbjct: 193 LDEVWGRDVYVVDRTVDVHIRKIREKIGS-----EYIETVKGVGYRMKE 236 >gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD A + L+ V G DG+ L +DA+I+D L + G Sbjct: 1 MRILLIEDDSEAAAYMAKGLREAGHVVDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ALR A +TPV +LS + ++D+VRGL++G DDY+ KP+ EL+ARI A R S Sbjct: 61 AIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L A+TV G I L +E++++E L +T+ M L +++ Sbjct: 121 STQPETRLKVEDLEMDLLARTVTRGGQEIDLQPREFRLLEYLMRHGGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR+K+ I TV G GY LR Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDFELP-LIHTVRGAGYTLR 222 >gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +++ + + G+ D ++LD L G + Sbjct: 4 RILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + ++ + P+ +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR+RA+ RR Sbjct: 64 LAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFRRV 123 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L ++ + + I + E++++ ++E L+ + Sbjct: 124 APTVLDEPLEIEGLKLDPVSHRISTHDRSIDMGPTEFKLLHFFMTHPERVYSREQLLDQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALHEH-GYDRLIQTVRGVGYRF 225 >gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583] gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583] Length = 221 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + +++ + GE+ L +DA+ILD+GL + G Sbjct: 1 MRILIVEDDRDLNHQLAETVRNAGYVSDSAFDGEEAYFLGSTESYDAVILDIGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R P+ IL+ DKV G+ +GADDY+ KPF EE++AR+RA++RR+ Sbjct: 61 RVVEKWRQDGHLMPILILTARDRWSDKVLGIDAGADDYVVKPFYLEEVMARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ V V G I LT E++++ L + +++ + HLYD Sbjct: 121 GHATSALSCGAVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDKVVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + I+VF+ +LRKKL +IET+ G GY Sbjct: 181 QDFDRDSNTIEVFVRRLRKKLGVD-----FIETIRGMGYR 215 >gi|221639032|ref|YP_002525294.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221159813|gb|ACM00793.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] Length = 232 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 153/223 (68%), Positives = 182/223 (81%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G EVLR L Sbjct: 2 EDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGHEVLRQL 61 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126 R+A++ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+GHAQS+ Sbjct: 62 RLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSV 121 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 I TG + VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEPE Sbjct: 122 IRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPE 181 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ ET Sbjct: 182 LKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 224 >gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13] Length = 230 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +IE+ LK+E V G + +E+ E I+LD+ + + G Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVMMPRLDGISA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ ILS S DK+ GLQ GADDY++KPFN ELVAR+++ +RR Sbjct: 66 THRIREEKNI-PIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTL 124 Query: 123 AQSLIVTGDL-----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +++ ++K V VQG + LT EY+++ELL + Sbjct: 125 GTFEGIKKVIDLNGLTIDKESKEVTVQGDPVKLTPIEYKIVELLMTNAGRVFSINDIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I K+R+K+ Y++ VWG GY + + Sbjct: 185 VWKEPGYNAENTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230 >gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ L ++ L++ F + GE + + D ++LDL L D+ G EV Sbjct: 4 VLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLMLPDVSGTEV 63 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 R ++ PV +L+ D+V G + GADDY++KPF+ ELV R++A+ RR+ Sbjct: 64 CRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALARRTG 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + G + V++DA V G + LT E++++ +L R ++E L Sbjct: 124 AGRPAERPPEQVGPIRVDVDAHRAFVDGEEVQLTPLEFRLLTMLMARLGRVQSREQLLED 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ E E + +D + +LR+KL G++ +ETV G GY L + + Sbjct: 184 VWEMSSEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPRE 229 >gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301] gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T] gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401] gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 301] gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 2457T] gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5 str. 8401] gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella flexneri 2002017] gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2a str. 2457T] gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2747-71] gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-671] gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2930-71] gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-304] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS+N + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIKMQGLSLNPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103] gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103] gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355] Length = 223 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V GE G + +DA++LDL L + G Sbjct: 1 MRILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + GD+ + VE G I L +E ++EL + LT+ LY Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E ++V I LRKKL N +I T+ G GY L E+ D Sbjct: 181 WDTEVSSNAVEVHIHHLRKKLGN-----RFIRTIHGVGYTLGESECD 222 >gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 68/220 (30%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + +E+ L++E F V G + + + K ++ +ILD+ + + GF Sbjct: 10 IKILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ + +L+ +ED+V+GL GADDY+ KPF+ EEL+ARI A +R Sbjct: 70 EVCRMLK-KIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHY 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S + G ++ K + G + L+ EY +++ L L+K M L++++ Sbjct: 129 PHLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR KL++ I T+ G GY Sbjct: 189 YDFGGEENIVEVYIRSLRDKLND--RQHRIIRTLRGAGYR 226 >gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 233 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++AL + L+S+ ++V G+D K D ++LD L + G E Sbjct: 4 RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ ++VRGL +GADDYI KPF+ EL+AR++ + R Sbjct: 64 LCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ GDL ++ D + V G I L EY+++E ++E L+ + Sbjct: 124 APERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV I +LR KL N ++ I TV G GY L + Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227 >gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L SI L+ + + V + D G + +E+ + +D I+LDL L I G Sbjct: 1 MKILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR T V ILS S++ D++ GL +GADDY+ KPF EL AR+R ++RR Sbjct: 61 ELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRREY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL + + + +G I LT KE ++E L K ++ E L+H +D Sbjct: 121 TQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P + V IC LRKKL + G + I G GY L E Sbjct: 181 SSVDPFSNSVRVHICSLRKKLRSVLGC-DPISNKIGEGYYLTE 222 >gi|255523798|ref|ZP_05390763.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512501|gb|EET88776.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 242 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 116/234 (49%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D++ + IE +L E F N+ G DGI++C+ + D ++LD+ L DI G Sbjct: 10 KILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGIKICEDEKPDIVVLDIMLPDIDGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ LS +S DK+ GL G DDY++KPF+ +E+ RI+A RR + Sbjct: 70 EVCKKIR-QFSYCPILFLSAKNSDVDKIVGLSMGGDDYVTKPFSPKEIAFRIKAQFRRQQ 128 Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +++++ V + + LT KEY+++ L+ N + KE Sbjct: 129 YDGIKEVSDNKNENIKISNINIDKLHSQVYKEDIEVKLTAKEYKLLLYLAENSNKIVNKE 188 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ I V I LR+KL I TV G GY L + + Sbjct: 189 RLCEVVWGDDYIGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKLVKGNE 242 >gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +++ F + + I L K D I+LD G + Sbjct: 14 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 73 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ + P+ +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A+ R Sbjct: 74 LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 133 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V V + + E++++ ++E L+++ Sbjct: 134 APTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 235 >gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR Length = 214 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 124/220 (56%), Gaps = 9/220 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L EN+NV G+DG++ + +D IILDL L I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRKIRQQQST-PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + N V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 123 DIIDV-------NGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYN 175 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL IETV G GYV+R Sbjct: 176 SEVETNVVDVYIRYLRNKLKPYDRD-KMIETVRGVGYVIR 214 >gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +++ F V + + + + D I+LD G + Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ + PV +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 LAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L+++ + V + + E++++ ++E L+++ Sbjct: 124 APTRLEETIDVQGLTLDPVSHRVTAGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEP-SGHDRLIQTVRGAGYRF 225 >gi|301054747|ref|YP_003792958.1| putative response regulator [Bacillus anthracis CI] gi|300376916|gb|ADK05820.1| predicted response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK RG SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 181 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 221 >gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ NF V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|89070625|ref|ZP_01157905.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516] gi|89043772|gb|EAR49974.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ + ++ L E+F+V+ G + + K D +ILD+GL D G Sbjct: 6 KILLVDDDEDIREALSEQLVMTEDFDVFEAANGSEAMTKAKEQHHDLVILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +L+G S D++ GL SGA+DY++KPF L+ARIRA +R Sbjct: 66 ELCRLMRKQGVKAPILMLTGHDSDSDQILGLDSGANDYVTKPFKFPVLLARIRAQLRTHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + K + +I LT KE +++ L + +++ L+ ++ Sbjct: 126 QSEDAVFQLGPYTFRPAQKMLLTDDDKKIRLTEKETNILKFLYRSSEGVVPRDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 227 >gi|87119431|ref|ZP_01075328.1| Two component Transcriptional regulator, Winged helix family protein [Marinomonas sp. MED121] gi|86164907|gb|EAQ66175.1| Two component Transcriptional regulator, Winged helix family protein [Marinomonas sp. MED121] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA + L+ + V V G I + +ILDL L GF V Sbjct: 9 ILIVEDDERLALLTKEYLQKNGYQVEVEADGSRAITRIIETQPSLVILDLMLPGADGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R++R P+ +L+ S D++ GL+ GADDY+SKP L+AR+++++RRS Sbjct: 69 CRSVR-EGYKAPILMLTARSDDVDQILGLEIGADDYVSKPVKPRVLLARVQSLLRRSIMD 127 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G L ++ + V G I LT E+ ++ LL+ L++E Sbjct: 128 VGKQTGGNQGEQNLTFGPLVIDNTRREAWVHGEEIELTSAEFDLLWLLASNAGRILSREE 187 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L + + + +DV I ++R K+ + I+T+ +GY+ + Sbjct: 188 IFGELRGIEYDGQDRSVDVRISRIRSKIGDDPVHPRRIKTIRSKGYLFVKEV 239 >gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis KIM 10] gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis Z176003] gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM 10] gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis D106004] gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis D182038] gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis Z176003] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 14 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 74 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 235 >gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD+ LA+ I L E + + +E+ + +FD +LD+ L D GFE Sbjct: 3 RILLVEDDENLANGISYALTQEGWATTLAGSVSYALEMLESGDFDLALLDVMLPDGNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ L+ + V GL+SGADDY++KPF EL++RI+A RR + Sbjct: 63 LCKKIR-ERSEMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQK 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +G L +N G I LT E++++ L + L ++ L + Sbjct: 122 RSVEEGGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKV 181 Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + + V I KLR+K+ IET+ G GY Sbjct: 182 WDVDGEFIDDNTLSVHIRKLREKVEEDPSKPKLIETLRGLGYRW 225 >gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 251 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGFE 61 IL+++D+ L + E V G IE FD ++LD+ L + G+E Sbjct: 25 ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGYE 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + S D V GL++GADDY++KPF EL +RIRA++RR+ Sbjct: 85 VCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAGP 144 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++++ + V + G +H+T E++++E L ++ L Sbjct: 145 RPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLRA 204 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + IDV + LR+KL +I TV G GY L+ Sbjct: 205 IWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRLQ 249 >gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ LA ++L L++E F+ + G G+E E+D I+LD+ L ++ G E+ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D V GL SGA+DY++KPF EEL ARIR ++R+ Sbjct: 73 CRRIR-ETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A IV G L + +A+ V + I LT +E+ ++ + K +++E L ++ Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 I+DV+I LR K+ + I TV G GY LR+ Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSV-KLIHTVRGIGYTLRD 231 >gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F D + I D ++LD + G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V++ ++ PV +L+ ED+V+GL+ GADDY+ KPF+ +EL+AR++AI R Sbjct: 64 VIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I L ++ + V I + EY+++ ++E LN++ Sbjct: 124 SPMATEDIIEMNGLVLDPTSHRVTSNETPIDMGPTEYKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G I+TV G GY Sbjct: 184 WGANVYVEDRTVDVHIRRLRKALEQE-GHDKMIQTVRGTGYRF 225 >gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 226 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 120 PVFTRLTINGLD-MDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVQGMGYRLQAE 221 >gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 226 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED K + + +L E F V+ T G DG + K +D I+LD+ L G E Sbjct: 3 KILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKNTYDLILLDIMLPFKSGDE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV I+S + K+ L+ GADDYI+KPF+ E+VAR+ A +RRS Sbjct: 63 ILKEVR-QFSDIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRRSHR 121 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ D++VN DAK V V + LT KEY ++ELL +N TK ++ Sbjct: 122 KTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYETIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I LR KL A K YIETVWG GY L Sbjct: 182 QDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWGLGYRL 223 >gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E +E + V T G++ + + D +ILD + G E Sbjct: 5 KLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSGIE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K P+ +L+ + +D+VRGL +GADDY+ KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRRI 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GD+ ++ A V +G + L EY++++ ++ L+ + Sbjct: 125 RPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + E++ +DV I +LRK + + G + I TV GY L N Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAI-DVPGADDPIRTVRSAGYALETN 229 >gi|30263183|ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47528548|ref|YP_019897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186033|ref|YP_029285.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65320511|ref|ZP_00393470.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167632499|ref|ZP_02390826.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637046|ref|ZP_02395326.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170684879|ref|ZP_02876104.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705287|ref|ZP_02895752.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650137|ref|ZP_02933138.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564781|ref|ZP_03017702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032201|ref|ZP_03099615.1| DNA-binding response regulator [Bacillus cereus W] gi|218904374|ref|YP_002452208.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225865180|ref|YP_002750558.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813952|ref|YP_002813961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915829|ref|ZP_04079405.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928291|ref|ZP_04091332.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934497|ref|ZP_04097332.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229046908|ref|ZP_04192540.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229602195|ref|YP_002867447.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685790|ref|ZP_05149649.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254723197|ref|ZP_05184985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738260|ref|ZP_05195963.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742572|ref|ZP_05200257.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752575|ref|ZP_05204611.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761091|ref|ZP_05213115.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118413|ref|ZP_07056159.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|30257817|gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47503696|gb|AAT32372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179960|gb|AAT55336.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167514553|gb|EDR89919.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532797|gb|EDR95433.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130142|gb|EDS99004.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170671139|gb|EDT21877.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084089|gb|EDT69148.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564098|gb|EDV18062.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994952|gb|EDX58906.1| DNA-binding response regulator [Bacillus cereus W] gi|218537351|gb|ACK89749.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786724|gb|ACO26941.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006224|gb|ACP15967.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228724453|gb|EEL75778.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228825134|gb|EEM70931.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831338|gb|EEM76934.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843810|gb|EEM88883.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266603|gb|ACQ48240.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724198|gb|EFI64894.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 246 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A++ + + L+ ++V G G L + D I+LDL L + GF Sbjct: 3 RILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAIWFQKTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L ++ Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPTAEQLMAEAN 242 Query: 235 TA 236 A Sbjct: 243 AA 244 >gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] Length = 236 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++EDD ++A +++ E ++V + G + +E+ K +D + LDL L G Sbjct: 3 KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKANPSSYDIVTLDLNLPKKDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ RRS Sbjct: 63 MEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122 Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170 G L ++ D + V + LT KE+ ++ ++ + + Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +D I KLR+KL A G ++TVWG GY ++ Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDSE 235 >gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 246 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ +A +I L++E F V G + + ++ + ++LD+ L G E Sbjct: 20 RVLVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A+ PV +L+ D + GL GADDY++KPF+ EL AR+ ++RR Sbjct: 80 VCRRV-QAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL ++ + V VQ +HLT E+ ++ L+ L++E Sbjct: 139 ATLAATAPRGATLRLGDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A+ Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGAD-----RIRTVHGVGYALETPAQ 245 >gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 244 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G+D + +ILDL + ++ G Sbjct: 16 MKILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMDG 75 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 EV++ +R P+ +LS ++ DK++GL +GADDY++KPFN E++AR+R+++R Sbjct: 76 MEVIKRIRKDSSI-PILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRS 134 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 135 EGQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDI 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A GG+ IETVWG GY + + Sbjct: 195 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVEAH 244 >gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +LIEDD A+ ++EL L + V GEDG++L + D I+LD+ L I GFEV Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR + Sbjct: 61 RRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERES 119 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 120 SDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHDY 179 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 180 LGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 220 >gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197] gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae] gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae Sd197] gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|167760385|ref|ZP_02432512.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704] gi|167662058|gb|EDS06188.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ A+ ++ +LK E V G+ +++ K FD I+LD+ + + GF++ Sbjct: 6 VLIIDDETAVQKAVSAVLKREQMEVSCAGSGQFALDILKENTFDIILLDVIMPEQDGFDL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR +I TPV +LSG + +V GL GADDYI+KPF+K LV++I+AIVRR+R + Sbjct: 66 LSELRRRRIYTPVILLSGKTEDAAQVEGLGLGADDYITKPFSKTVLVSKIQAIVRRTRQY 125 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 QS I+ G +++++++T+ G I LT KE+ ++ L T +K+ Sbjct: 126 ATTAESIQSPILKGPFTLHMNSQTIFKNGKEIALTSKEFALLCLFMDHPGHTFSKQELFQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ D + I V+I KLR K+ + +I TVWG+GY Sbjct: 186 EVWK-NDGSDNNTILVYIKKLRSKIEDDPSQPFHIRTVWGKGYQF 229 >gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD I + N+ + G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L + L + V + G + L KE+Q+++ L N +++ + ++ Sbjct: 121 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVVKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V V+G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227 >gi|319934759|ref|ZP_08009204.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1] gi|319810136|gb|EFW06498.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1] Length = 226 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD + I+ K + + G DG+ D I+LD+ + I G+EV Sbjct: 5 ILLIEDDIDIRSIIKTYFKKRDIVIIEAIDGFDGLSKL-NNSTDLILLDIMMPGIDGYEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +S +S E++++ Q G DDYISKPF L A+ AI +R + Sbjct: 64 CYQIR-QSSQCPIVFMSALSEEENQLKAFQYGGDDYISKPFLPSVLYAKCLAICKRQQNT 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 G L+++ V ++ + LT KEY ++E L+ L++E L+ L+ Sbjct: 123 QSETKNFGKLNIDYLNHQVWLENEELSLTHKEYLLLEYLTKNAYQLLSREQILDALWGYD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D +I K+RKKL G YI+TV+ GYV + Sbjct: 183 YYGDARAVDTYIKKVRKKLGKYQG---YIQTVFKVGYVFK 219 >gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ + L F V + G DG L FD IILD+ L D+ G+ Sbjct: 1 MKLLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++++ALR TPV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 QIVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL+++L VE G++I+L+ KE+ ++ELL R+ L + + + ++ Sbjct: 121 SPPSSNQLKISDLTLDLIKHRVERSGYKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV I +LR K+ + I TV G GY+L + ++ Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNF-ETKLIHTVRGMGYMLDAESDND 228 >gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A + L++ F + D G+ + D ++LD+ L G EV Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + P+ +L+ D++ GL+ GADDYI KPF+ E+VAR++A++RRS Sbjct: 67 CKELR-SFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTP 125 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G + ++ D++ V V G+ + LT E+ +++++ R N ++ L+ Sbjct: 126 QEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + ID I LRKK+ A I +++G GY Sbjct: 186 SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 223 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ++ + LK++ ++V G + EL K ++D I+LDL L + G + Sbjct: 3 RVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNGLD 62 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R+ TP+ +L+ + + KV GL++GADDY++KPF+ +EL+ARI A++RR+ Sbjct: 63 LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRRA 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +K+V V G IHLT E Q++E ++E L ++ Sbjct: 123 GYSEVLEFEG--IVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +DV+I +LRKKL + +++T+ GY L Sbjct: 181 GVEHNETTRTVDVYISRLRKKLGDKG---KFLKTLPRLGYKL 219 >gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + F + GE+G +D IILDL L G E Sbjct: 3 RILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNLPGADGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R++R P+ I+S DK+RG GADD+++KPF+ EL+AR +A + R Sbjct: 63 VCRSIRAQLDV-PILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLSRYER 121 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + + A+ V V G+ + LT +E+ ++ ++ N +K Sbjct: 122 FANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSKTELFE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ + V I ++R+K+ +IETVWG GY Sbjct: 182 RLWGFDSAGDIATVAVHIRRVREKIEAVPSNPQFIETVWGAGYRF 226 >gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 223 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L+ F V G DG+ L + ++D+ L + G Sbjct: 1 MRILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +V+ LR K++TP+ ILS S+ED+VRGL++G+DDYISKPF+ EL+AR++A I R S Sbjct: 61 KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+LS+NL + V + L +E+ ++E L+K M + H++ Sbjct: 121 SVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV +C+LR K+ + + T+ G GYVL+E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDW-DRKMLHTLRGVGYVLKE 223 >gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ A + L F V + G DG +D +ILD+ L D+ G+ Sbjct: 1 MKLLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++++LR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APNHPDRIQIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + A I TV G GY L D Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFDPKLIHTVRGMGYTLDAPDAD 227 >gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 241 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ + + ++D +++D L G Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHIADLASDGEEGLAMAESGDYDVLVVDRMLPKRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +LR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 76 SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ DL ++ + V G + L +E++++E L +T+ M L +++ Sbjct: 136 GPAEETSYRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 196 DYHFDPQTNVIDVHISRLRSKIDKGFDHP-LLHTIRGAGYMIRD 238 >gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13] gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 232 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +I++ L+ E NV G + +E+ + ++LD+ + + G Sbjct: 8 VLVVDDEKEIRDAIDIYLRGEGINVIKAGDGFEALEILDKEDIHLVVLDIMMPKLDGMRT 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 68 CLKIR-ESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL+++ K V ++G I LT EY+++ LL+ + + Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ + YI+ VWG GY + + Sbjct: 187 VWEEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKIDK 232 >gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM 16795] gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM 16795] Length = 236 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL++EDD +A +++ ++ E FN+ + + E+ ++ E+D I+LD+ L D G Sbjct: 1 MKNILMVEDDSTIAFAVKYAVEQEGFNLDIAENLENARKIVNSKEYDLILLDVMLPDGNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E L+ LR TPV L+ + V GL G DDYI+KPF EL++RI AI+RR Sbjct: 61 YEFLKQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRK 120 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ ++S++ V I LT EY+++ +L KN L++ L Sbjct: 121 GKSQDSNKKILKFKNISIHTLEARVFKNNEEIFLTSAEYKLLLILIQNKNMVLSRAQILE 180 Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+D D + V+I +LR+K+ + + YI TV G GY + +E Sbjct: 181 KLWDVTYDFINDNTLSVYIKRLREKIEDDSSKPQYILTVRGLGYKWNGSDDNE 233 >gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ALA + L+ E+F V T GE+ I L + D ++LD + + G E Sbjct: 5 RVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGVSGIE 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + P+ +L+ ED+VRGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 65 VCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R D+ ++ + V G I L E+++++ ++E L+ + Sbjct: 125 RPALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E + +DV I +LRK + N A + I TV GY L Sbjct: 185 WGRDSDIEPRTVDVHIRRLRKAI-NLADAPDLIRTVRSAGYAL 226 >gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato Max13] gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato K40] gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 224 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLRKTVNTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 249 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 121/240 (50%), Gaps = 7/240 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+ + + L+ ++V + G G L D I+LDL L + GF Sbjct: 4 RILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFT 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + + PV +L+ + +DKV G +GADDY++KPF EE++AR+RA+++R+ Sbjct: 64 VCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQRT 123 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L++ + + LT E++++ L R T+ Sbjct: 124 DRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L A+ E ++ + Sbjct: 184 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPAETELHQHAD 243 >gi|90423350|ref|YP_531720.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105364|gb|ABD87401.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 240 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + GE+G+ L ++D +++D L G Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHVADHAADGEEGLALADSGDYDVLVIDRMLPKRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR TP ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 76 SVIGTLRDNGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V + L +E++++E L +T+ M L +++ Sbjct: 136 GPAEETSYKVGDLELDRLSHRVARGDEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 196 DYHFDPQTNVIDVHISRLRSKIDKGFERP-LLHTIRGAGYMIRD 238 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + ++V I LT +EY ++ +L N +T+E L+ Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227 >gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 246 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G + + + DA++LD+ L D+ GF+ Sbjct: 21 RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGFQ 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR S PV L+ ++E++V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 81 VLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 140 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++++ GDL+++ D+ V I LT E++++ L L+K L+ Sbjct: 141 AVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRVLSKAQILDR 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ AG I T+ G GYVL+ Sbjct: 201 VWNYDFGGQANVVELYISYLRKKI--DAGRAPMIHTLRGAGYVLKP 244 >gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + ++E+ LK+E V+ G D + L + ++ II+D+ + + G + Sbjct: 5 KVLIVDDEDEIREAVEIYLKNEGIAVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 65 ATFKIR-ENKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L ++ K + V G I LT EY+++ELL K + E Sbjct: 124 LGNYKETEDKVVAGALILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I ++R+K+ + Y++ VWG GY ++E Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230 >gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 218 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K LA + L+ F + G + L + +DAIILDLGL G Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R I TPV +L+ + +K+ GL +GADDY++KPF ELVAR++A+VRR+ Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S++ G + +++ A V +G I LT E++++ L + +++ ++H+Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++VFI ++RKK + IETV G GY + E Sbjct: 181 QDFDRDSNTVEVFIGRIRKK-----THADLIETVRGLGYRINE 218 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + ++ L+ E +++ + GE G+EL + + D I+LD L + G + Sbjct: 3 HILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R I+ P+ L+ +++D + GLQ GA+DYI KPF+ EEL+ RI+ R Sbjct: 63 VCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHFRN--S 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q ++ G++S+N V+++ I LT +E++++E L K ++ + ++ Sbjct: 121 IEQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWGI 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + +IDVFI +RKKL+ YI+TV G GY+ Sbjct: 181 NFEYDTGVIDVFINAIRKKLNLDKDN-GYIKTVRGVGYI 218 >gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 245 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + ++ L++E F V G +E + ++ D ++LD+ L G E Sbjct: 20 RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A PV +L+ D + GL GADDY++KPF+ E+ AR+ ++RR Sbjct: 80 VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 138 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L V+ + V V+G +HLT E+ ++ L+ L++E Sbjct: 139 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPAP 245 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227 >gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] Length = 227 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 111/224 (49%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 + + ED+ ++ ++ L+ E V + GE+ ++ K + D I++D L D+ G + Sbjct: 4 HVFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLSGVD 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ P+ +L+ EDK++ +GADDY++KPF+++EL ARI+++ R Sbjct: 64 ICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ DL ++ K V I L E+++++ ++E LN++ Sbjct: 124 KPQSSVDVVEFTDLKIDRITKRVYRNNTEISLGPTEFKLLDFFIKNPKRVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +LR+ ++ I TV GY L Sbjct: 184 WGENIYVESRTVDVHIRRLRQAINIENTKP-LIRTVRSAGYSLE 226 >gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 107/227 (47%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ EDD ++ +L +E F V G + EL K D + LD+ + + G+ Sbjct: 1 MKILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQRPDFVCLDVMMPHLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EV R +R + P+ L+ S D V GL+ GADDY++KPF E++ARIRAI R Sbjct: 61 EVCRRIRRDDDTVPILFLTAKSEEIDAVLGLELGADDYMAKPFGVREILARIRAITRRTG 120 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + GDL + I L+ ++ +++ LL R + ++ Sbjct: 121 LLRRTQGFEGEFSMGDLRIVPSELRAYRGDLEIGLSLRDLKVLRLLKRRCGRVVDRDEMA 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ P + +D I +LRK++ A I TV G GY Sbjct: 181 DDVWGADYYPGSRALDQHISQLRKRIELDAAHPCIIRTVHGAGYRYE 227 >gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65] gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65] Length = 232 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ I + L+ + +D L + I+LD L G E Sbjct: 7 KILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGLE 66 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 R L+ + P+ +L+ ++KV GL++GADDYI+KPF+ ELVAR++A+ R Sbjct: 67 FARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRRT 126 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ V + + EY++++ + ++ L+ + Sbjct: 127 TPQGIEDPIEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + +DV I +LRK L + I+TV G GY Sbjct: 187 WGGNVYVEERTVDVHIRRLRKALGSNYEH--LIQTVRGTGYRF 227 >gi|88703724|ref|ZP_01101440.1| heavy metal response regulator [Congregibacter litoralis KT71] gi|88702438|gb|EAQ99541.1| heavy metal response regulator [Congregibacter litoralis KT71] Length = 230 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 3/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ++ L F V + G DG L FD ++LD+ L D+ G+ Sbjct: 1 MRLLVVEDEIKTGDYVQQGLTEAGFLVTLARNGLDGHHLAMTETFDLLVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++++LR A TPV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 RIVQSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL+++L G +I+L+ KE+ ++ELL R+ L + + + ++ Sbjct: 121 VPVMTDQIKVADLTLDLPRHRATRAGRKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDET 229 D + + +IDV I +LR K+ + I TV G GY L E+ +E+ Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-EPKLIHTVRGMGYKLEVEDDHEES 230 >gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+ L + L + V V G++ +EL + Y D II D+ + ++ G++ Sbjct: 4 RILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ P ++ +S DK+ L GADD+I+KPF+ ELV R+ I+RR Sbjct: 64 LIGEVQYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRIHR 123 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + GDL +N + V V G + +T K ++++ +L+ +K ++ Sbjct: 124 SAGADEKLQLGDLEINHATREVTVHGQSLMMTIKSFELLWILASNPQRVFSKTELYEKVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + ++V I LR+ L+ + K I+TVWG GY + Sbjct: 184 QEDFVDDTNTLNVHIHALRQDLAKFSTEKTPTIKTVWGLGYKIE 227 >gi|309778021|ref|ZP_07672962.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914211|gb|EFP60010.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium 3_1_53] Length = 227 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L +EDD+A+A + LK E + V D + ++ FD ++LD+GL D G+ Sbjct: 1 MNVLFVEDDQAIAMGLVYTLKKEGYEVVWCDCKQAALQQLHRETFDLLLLDVGLPDGSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + PV L+ + + V GL G DDYI+KPF EL++RIR++ RR Sbjct: 61 DICTYAKSR-QDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRIRSVQRRYH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I LS+ V + I LT EY+++ +L L++ L ++D Sbjct: 120 RQEEDIIQIQYLSIYPKQGKVYKEQEEILLTALEYRLLMVLVNHPQQVLSRSQLLEGIWD 179 Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + V++ +LR+KL I TV G GY L Sbjct: 180 VAGDFVNDNTLSVYMKRLREKLERDPKNPTIIVTVRGLGYRLE 222 >gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564] gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564] Length = 232 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L +NV V G + +E+ K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +N + V+V + LT K ++++ LL+ +K ++ Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + ++V I LR++L+ A + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227 >gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 234 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+ +DD + I L LK ++V + G++ I L + + D I+LD+ + DI G+ Sbjct: 4 IKVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPDIDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R K + P+ +L+ D+V GL+ GADDY++KPF+ E+VARI+AI RR Sbjct: 64 EVCKEIR-KKANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRRMP 122 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S+ +D + V G ++ KE+ ++ L T+E Sbjct: 123 ALTNNTNTNENKDFTFSSFSILVDQREVIAHGEKLFFRPKEFDLLLYLVQNPQIVFTREQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV I ++R A I TVWG GY N K+ Sbjct: 183 LLQKVWGFDFAGDVRTVDVHIKRIRD--EFAKHQILCIHTVWGVGYQFHINKKE 234 >gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX] gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX] Length = 222 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E ++V VT G + ++ + + D ++LDLGL ++ G EV Sbjct: 4 VLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRARSGDIDLLVLDLGLPELDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 64 ARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGGGE 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ D++ + + LT KE+ ++ +L +T+E + ++D Sbjct: 124 VPVVHGV---RIDTDSRRAWLGDRELQLTTKEFDLLRVLVREAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LR+KL + A +YI TV G G+ + Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFEKE 222 >gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1] gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1] gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] Length = 221 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMVALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S+I + ++ + + V + I LT +EY+++EL L K+ L++ L Sbjct: 121 GHHHSVIEQSGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKLG-----KQFIRTVHGVGYAL 216 >gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] Length = 249 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L+ + F V G++ + + D ++LD L + G EV Sbjct: 24 VLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLPGLSGIEV 83 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R +R + P+ +++ +D VR L +GADDYI+KPFN + L ARIRA+ R S Sbjct: 84 CRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRAS 143 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ ++ D++++L V IHL E++++E ++E L+ ++ Sbjct: 144 PVTAKGMLTFHDITMDLATHRVHRNNRPIHLGPTEFRLMEFFLQHPRRVFSREELLDSVW 203 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I +LRK ++ G + + TV GY L + Sbjct: 204 GTDIHVEPRTVDVHIRRLRKAVNGE-GEVDLVRTVRAAGYALDTD 247 >gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae L20] gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 221 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + ++L L +NF V G+ G E E+DA++LDL L + G Sbjct: 1 MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R + PV IL+ ++++++ G SGADDY+ KPF E+V R++A++RR Sbjct: 61 AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I GDL+++ V + I+LT KE+Q++ L + K+ LT+ LY Sbjct: 121 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++V+I LRKKL K +I+TV G GY + Sbjct: 181 WDNDVSSNAMEVYIHNLRKKLG-----KEWIKTVHGIGYKI 216 >gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium 6_1_63FAA] gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium 6_1_63FAA] Length = 235 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 12/236 (5%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLT 55 M+ +L+I+DDK L ++ ++ EN + G +G+++ K + F IILD+ + Sbjct: 1 MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + GF+VL+ +R + PV +L+ S+ EDKV GL+ GADDY++KPF+ EL AR+ ++ Sbjct: 61 YMDGFQVLKKIR-EVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119 Query: 116 VRRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +RR I D++++ ++V V+G + LTGKE+ ++ L+ K Sbjct: 120 IRRYTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 TK+ +++ + I FI KLRKK+ Y+ TV G GY + A Sbjct: 180 TKKQIYTQVWEDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNKEA 235 >gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 233 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + V G +G+ L + + + IILD+ + D+ GF Sbjct: 4 VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K + PV +L+ S EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 64 QVLQKIR-EKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYT 122 Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ D+ ++ +TV VQ + LTGKE+ ++ L+ K TK+ Sbjct: 123 TLNPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + + FI KLRKK+ YI+TV G GY + A Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233 >gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae FF5] gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae 642] Length = 224 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLRKTVSTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 11/238 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + +E+ + + I++D+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 AQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +N D+ V G I L+ EY+++ L + L+K LNH++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLRENAKDET 229 + I++ +I LRKK+ + +G + IET G GY++RE + Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREPKAGQA 246 >gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 236 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++DD + + L+L E +NV G G+ L + D I+LDL L DI G Sbjct: 7 IKILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQ 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R + P+ ILS ++ DKV L+ GADDY++KPF EL+AR++AI+RRS Sbjct: 67 QICKIIRSE-LDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSE 125 Query: 121 GHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S + ++++ ++ V ++ ++ LT KEY+++ + L+++ Sbjct: 126 KNNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDD 185 Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +N ++ + +DV I LR+K+ + ++TV G GY +++ Sbjct: 186 IVNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKIKK 236 >gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 220 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK + +E L V G + +D ++LDLGL + G Sbjct: 1 MRVLLVEDDKLVGSGVEDGLIEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R + TPV +++ ++ D+V GL +GADDY+ KPF+ EL+AR RA+VRRS+ Sbjct: 61 DLLGWIRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G+L+V+ TV RI LT +E ++ L + L++ + LY Sbjct: 121 GRGTDTIEYGELTVDPALMTVVRGAERIALTSRECALLVELLANQGRPLSRAQLQDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E I+V + LRKKL I T+ G GYV+ + Sbjct: 181 WNEEIESNAIEVHVSNLRKKLGA-----ELIRTIRGVGYVVEK 218 >gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3] gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A] gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + IILDL + +I G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVIKRVRKDSDI-PILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G+ I+TVWG GY + ++ Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH 229 >gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP 102891] gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP 102891] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSSEESVVEFGDFRLNLGTREMFRDDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 226 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD LA ++ +LK+ ++ V V G+ G+ + +D +LD+ L GF Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR + P+ +L+ I DKV GL +GADDY++KPF EL+ARIR++ RR+ Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D++++LDA +E +G RI L+ KE+ ++ +L + + +K+ ++ ++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ LRKKL+ I T+ G+GY L A Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGAT-TCIVTLRGQGYRLGTQA 224 >gi|297625346|ref|YP_003687109.1| Response regulator, two-component system [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921111|emb|CBL55658.1| Response regulator, two-component system [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +LA + + V G + + + + +ILDLGL + G EV Sbjct: 14 ILIVEDEHSLATVMAGYFTRNGYRAEVVGDGLEAVAAARRLDPSVVILDLGLPSLDGVEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R + + + + D++ GL GADDY++KPF+ L+AR++A+ RR R Sbjct: 74 ARRIRTFSDCYILML-TARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSA 132 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G+L+++ A+ V++ I LT E+ ++ L+ ++++ + + Sbjct: 133 ITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEAV 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++D I LRKKL ++A +IETV G GY + Sbjct: 193 WGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRM 235 >gi|228477753|ref|ZP_04062382.1| DNA-binding response regulator VncR [Streptococcus salivarius SK126] gi|228250642|gb|EEK09853.1| DNA-binding response regulator VncR [Streptococcus salivarius SK126] Length = 217 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + + L + V+ G++ ++L D ++LD+ L + G Sbjct: 1 MKILIVEDEVLIREGMSDYLMECGYEVFEAGDGQEALDLFHREAPDLVLLDIQLPILNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R S PV +L+ E K+ AD Y+ KPF+ L RI AI ++ Sbjct: 61 EVLKEIR-KTSSVPVLMLTAFHDEEYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKK-- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ V+ ++ T + G I + KE +++E L + T+ L+ ++ Sbjct: 118 LQPSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E P ++IDV+I +LRKKL I TV GY L Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLELD-----CIVTVRNVGYKLE 215 >gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 235 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + IE+ LKS+N+NVY G +G+E+ + E I+D+ + + G + Sbjct: 6 ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGVEGLEIIESKEIHLAIVDIMMPRMDGVTM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV +LS S DKV GL GADDY++KPF EL+AR+ + +RR Sbjct: 66 TLKLR-EHHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTKF 124 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V G + +N D V V G + +T E++++ LL + + Sbjct: 125 NNRGQNKKENDRVHVIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSADE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ I V + +R K+ Y++ VWG GY + + Sbjct: 185 IYERVWN-EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKMEKQ 234 >gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + +++E F+V G++ + + D I+LD L + G EV Sbjct: 7 VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEV 66 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L++ PV +LS S DKVRGL++GADDYI+KP++ EL+AR+R +RR R Sbjct: 67 CRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRVR 126 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D++++L V G + L E++++ R ++E L+ ++ Sbjct: 127 PSTVAERLEYEDIAIDLTEHRVYRGGDTLSLGPTEFRLLSAFMERPGRVWSREQLLDRVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + +LRK L + I TV G GY L Sbjct: 187 GRDIYVDSRTVDVHVGRLRKAL-KVGEAGDPIRTVRGAGYAL 227 >gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces clavuligerus ATCC 27064] Length = 342 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + Y D ++LD+ + + G Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 167 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 168 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 227 Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++ DL ++L + V + LT E+ ++ELL LT Sbjct: 228 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 287 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 288 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 338 >gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD +A SI+L L S+N+ V V G++ ++L + D I++D+ + G + Sbjct: 6 ILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIMMPKKNGIDT 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ILS S DK+ GL GADDYI+KPFN EL+AR+ +++RR + Sbjct: 66 TMLIRQE-SIIPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRRYSRY 124 Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I G + +N + K + V + +T EY+++ LL + + Sbjct: 125 GGRYSEETEQSIRIGGIELNKETKQIFVDEEEVRITPLEYKILLLLMSYPGKVFSIDEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I ++R+K+ Y++ VWG GY + Sbjct: 185 EQVWKEPAY-NPETVTVHIRRIREKIEINPKEPRYLKVVWGIGYKFEK 231 >gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 ++L+++D+ + ++ L ++F V + G +++ + +ILD+ + + G+ Sbjct: 5 KVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +V R +R + P+ +L+ + D++ G + G D+YISKPF+ + LVAR+ AI R + Sbjct: 65 QVCREIRG-VSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRRSN 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G +S++ A V+ G + L+ KE++++ + L++E LN ++ Sbjct: 124 ALAPDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNSVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID + KLR KL +YI+T+WG GY Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLG---KQGDYIKTIWGMGYKFE 223 >gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei B7210] Length = 240 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 +E I+V++ +LRKK+ + I TV G GY L + A + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAPAGASDAPNAA 236 >gi|42519058|ref|NP_964988.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583345|gb|AAS08954.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+++LA I+ L+ E + V G++G+E + + I+LD L G Sbjct: 5 KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWMLPVYDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R P+ +L+ + D L G DDY++KPF EEL ARIR I+RR Sbjct: 65 VLRRIR-KVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ L ++L + +G I+LT KEY ++ L +++ L+ Sbjct: 124 EKRRVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + +DV+I LR KL +N I+TV G GY LR+ +E Sbjct: 184 VWGYDFVGQTNTVDVYIRALRNKLGKY---RNLIKTVRGYGYCLRKVDDNE 231 >gi|89893072|ref|YP_516559.1| hypothetical protein DSY0326 [Desulfitobacterium hafniense Y51] gi|89332520|dbj|BAE82115.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I+L++D+ +L ++E+++ ++ Y G +EL + + D ILDL + + GF Sbjct: 1 MKIMLVDDEPSLCSALEIVITRAGYDFYCATDGIAALELFRSKKPDLAILDLMVPWLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +R P+ ILS I DK G ++GADDY++KPF +EEL+ RI A++RR Sbjct: 61 EICEEIRRTDSHIPILILSAKGDIVDKKMGFRAGADDYLTKPFEEEELLLRIEALLRRRN 120 Query: 121 GHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + G+L ++ V V+ ++LT KEYQ+I L++ T+E Sbjct: 121 KESGSLPINGLSQKVEIGELIIDPFRYEVTVRDRLVNLTPKEYQIIALMANHPGKVFTRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ E I V+I ++R+K+ ++TVW GY L + Sbjct: 181 DLIDCIWGKEFETGSISIPVYIRRIREKIEQDPSEPTLLKTVWRFGYKLGD 231 >gi|330447153|ref|ZP_08310803.1| osmolarity response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491344|dbj|GAA05300.1| osmolarity response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 239 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A +I G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + ++ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGRE 238 >gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 228 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVVKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V V+G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + +E L + V G+ ++L D +ILD+ + I G E Sbjct: 4 RILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ L+ SS DK GL +G DDY++KPF++EEL AR+ A +RR Sbjct: 63 TCQHIR-KTSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G+L V+ + V + +I L+ EY++++LL ++N + + Sbjct: 122 YQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNIY 181 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I KLR K+ + YI+T WGRGY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228 >gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella avium 197N] gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella avium 197N] Length = 232 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V E L + D I+LD L + G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGMSGLSL 64 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + PV +L+ + +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L ++ + + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDIIDVGGLKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L G ++ETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-TGHDAHVETVRGSGYRF 225 >gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica serovar Dublin] Length = 248 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A +P L+ S+ED+V+GL++GA+DY+ KPF+ EL+ R+RA +R+ Sbjct: 83 QVLRALRTA-HQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PVFTRLTINGLD-MDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DEPFEKKLIMTVRGMGYRLQAE 243 >gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933] gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. Sakai] gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227] gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. W3110] gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89] gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1] gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A] gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS] gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739] gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5] gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94] gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC4024] gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11] gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str. E2348/69] gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1] gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88] gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a] gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989] gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39] gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026] gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606] gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. TW14359] gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9] gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B] gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. FRIK2000] gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str. FRIK966] gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736] gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9] gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or CreC) [Escherichia coli O157:H7 str. EDL933] gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli] gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB [Escherichia coli str. K-12 substr. MG1655] gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli O157:H7 str. Sakai] gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150] gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227] gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K12 substr. W3110] gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli UTI89] gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC O1] gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli HS] gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E24377A] gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli SMS-3-5] gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii CDC 3083-94] gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11] gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli] gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O127:H6 str. E2348/69] gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli 55989] gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI1] gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli S88] gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI39] gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli ED1a] gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli UMN026] gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia coli LF82] gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli B str. REL606] gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BL21(DE3)] gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. TW14359] gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli DH1] gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15] gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator [Escherichia coli 042] gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli IHE3034] gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU 83972] gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146] gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator [Escherichia coli ETEC H10407] gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG 857C] gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli W] gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1] gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 85-1] gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 153-1] gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 3431] gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112] gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83] gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC1212] gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327] gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B] gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. G5101] gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. 493-89] gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H 2687] gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA 5905] gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. LSU-61] gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli EPECa14] gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E128010] gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella sonnei 53G] gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli LT-68] gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1180] gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli RN587/1] gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli KO11] gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1520] gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E482] gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H120] gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H252] gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H489] gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M863] gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA007] gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TW10509] gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 57-2] gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 60-1] gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 117-3] gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1167] gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044] gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125] gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli STEC_7v] gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Escherichia coli AA86] gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 155-74] gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 5216-82] gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 3594-74] gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9] gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae Cit 7] Length = 224 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLRKTVSTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae 73] gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae 73] Length = 222 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + +K + GEDG L +DA+ILD+GL+ + G Sbjct: 1 MRILIVEDDRDLNHQLAKAVKDAGYVSDSAFNGEDGYFLGSTEPYDAVILDIGLSRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ R S P+ +L+ DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS Sbjct: 61 QVVERWRKEGYSMPILMLTARDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++ V V G I LT E++++ L + +++ + HLYD Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFVDGQLIKLTSYEFRLLAYLMHHCDKVVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+VFI +LRKKL + IETV G GY ++ Sbjct: 181 QDFNKDSNTIEVFIRRLRKKLGVDS-----IETVRGLGYRIK 217 >gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD ++ + L L+ V GE+G+ L + + ++LDL L I G + Sbjct: 3 RVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLPGINGVQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ D V GL++GADDYI KP E + ARI+A++RR +G Sbjct: 63 VCRRIR-ETSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRRLKG 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G+L+++ TV G R+ L E +++ LS +++ L +++ Sbjct: 122 PGGLPGVEHHGELAIDRAGLTVAKNGERVALAPSEIKLLLHLSASPEQVFSRQQLLEYVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++D + +LR K+ + G YI+TV G GY Sbjct: 182 EHSYHADARLVDACVRRLRNKVEDPDGHPRYIQTVRGFGYRFGP 225 >gi|291302356|ref|YP_003513634.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571576|gb|ADD44541.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED + + + L + F V G +G+ E D I+LD+GL D+ GF+ Sbjct: 3 RILIIEDSERITAFLTKGLAAAGFTPSVAHTGAEGLGRALTGEVDLIVLDIGLPDMDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LRALR A TPV IL+ S D+V GL GADDY+ KPF+ +EL+ARIR +R G Sbjct: 63 LLRALRAAGRDTPVIILTARDSATDRVTGLSDGADDYMPKPFSVDELLARIRLRLRPVSG 122 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GDL ++L + V G ++ LT +E +++ L L++E L+ ++ Sbjct: 123 GGSDQAVLRVGDLELDLRTRAVRAGGRQVELTARELSLLDTLMRNAGQVLSREQLLSRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LR+K+ IETV G GY L Sbjct: 183 GFDFDPGSNVVDVYVRYLRRKIGAD-----RIETVRGLGYRL 219 >gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330] gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365] gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330] gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family [Brucella canis ATCC 23365] gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 229 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224 >gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 601 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + + L S+++ V G++G + + Y +D I+LDL L + G Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + TP+ +L+ + KV GL +GADDY++KPF+ +EL+ARIRA++RR Sbjct: 61 SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ +L ++ V G +HLT KEY ++EL + + ++ L+ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228 + P + I LR+KL A ++ I+TV+G GY L+ ++E Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREE 230 Score = 41.1 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 6/28 (21%), Positives = 17/28 (60%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYV 29 R+++++DD + +++ +L + VY Sbjct: 396 RVMIVDDDPQILTTLQTLLSAWGIKVYT 423 >gi|315646885|ref|ZP_07900000.1| two-component response regulator [Paenibacillus vortex V453] gi|315277815|gb|EFU41139.1| two-component response regulator [Paenibacillus vortex V453] Length = 235 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+++D+ + ++ +L E VY E + + + + +ILD+ L D G+ Sbjct: 6 KVLIVDDEADIVRLLQTVLVKEGIDQVYTAATAEAAWDEFQRCQPEIVILDIMLPDGEGY 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R A + P+ LS + DK+ G G DDYI+KPF+ +E+ RI+A RR+ Sbjct: 66 EVCKKIR-AVSNVPIFFLSAKAEEIDKILGFAIGGDDYITKPFSPKEVAYRIKARFRRAD 124 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 LI G ++ + ++ G I L KE ++ LL ++KE Sbjct: 125 PVQLEDKANRLIKVGPFELDEEKVELKKNGKVIPLKPKELGLLTLLLKHPGQIISKESLY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++ + V + +LR+K+ + Y+ TV G GY L A+DE Sbjct: 185 DQVWGEEFFGFDNTVMVHVRRLREKIEDDPSAPRYLLTVKGLGYKLV--AEDE 235 >gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 227 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K LA IEL L+ E + V V G +G++ ++D I+LDL L + G E Sbjct: 3 RILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR TPV +++ SI D+V GL GADDYI KPF EEL+AR+RAI RR Sbjct: 63 VCRRLRQE-KETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 DL + +++ V+ G I LT +EY ++ L KN +T+E LN Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E E ++DV+I LR K+ + G +YI+TV G GYV+RE Sbjct: 182 KVWGYETEVETNVVDVYIRYLRNKI-DTEGEDSYIQTVRGTGYVMRE 227 >gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A ++ L++E F+V + + G++ + L + D I+LD L ++ G E+ Sbjct: 8 VLVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWMLPNVSGIEI 67 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R ++ P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R +RR+R Sbjct: 68 CRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARLRTQLRRTR 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ V G +HL E++++ L + T+E L+ ++ Sbjct: 128 PASMGERLSFADIILDAGEHRVFRAGQPVHLGPTEFRLLSTLMEKPGRVWTREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV + +LRK L G N + TV G GY L Sbjct: 188 GRDIYVDTRTIDVHVGRLRKALMANGGN-NPVRTVRGTGYSL 228 >gi|47564389|ref|ZP_00235434.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558541|gb|EAL16864.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + I G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQDVLEKENIHLAIVDIMMPFIDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546] gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ GD +NL + + + LT E+ +++ L ++++ Sbjct: 126 ELPGAPSSEESIVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ L YI+TVWG GYV + K+ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238 >gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L I+ L +E + V G++ + L + E +ILD+ + ++ G+ V Sbjct: 22 ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELDGWSV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR----AIVRR 118 R +R + PV +L+ + +D + G + GADDY++KPF+ L+AR + + Sbjct: 82 CRRIR-KTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 140 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + V+ ++TV+V G I+LT E++++ L + +T+E + + Sbjct: 141 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 200 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ++ I LR KL + + I TV GY N Sbjct: 201 WGYEFSGDDRTVNSHIRNLRTKLGDKS---KCIITVVRAGYKFEGNV 244 >gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 236 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 I++I+D++ + I+ L++ F V E + D I+LD+ L + G Sbjct: 5 HIVVIDDEEHILELIKYNLEANGFIVSTYTSVEAMQKSIGESPIDLILLDIMLPGMDGIT 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L R + PV ++S + DK+ GL+ GADDYI+KPF+ ELVAR++AI+RR+ Sbjct: 65 ALNIFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRRA 124 Query: 120 RGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +V DL +++++ + + I LT KE+++++LL K LT+ Sbjct: 125 DRNEVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E+ L+ ++ E + +DV I LR K G YIETV G GY + Sbjct: 185 EVILDKVWGYDYYGETRTVDVHIRYLRAKFEAYGIG-EYIETVRGVGYRFVKE 236 >gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 263 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ALA + L+ E F V G + I + + + D +ILD+GL I G EV Sbjct: 34 LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLEVC 93 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ ++ D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 94 RQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMRP 152 Query: 124 ---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 V G LS+++ A+ V + G I LT E+ ++E LS R L++ Sbjct: 153 VAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQL 212 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ + +G ++DV I LR+KL + A +I TV G GY + Sbjct: 213 LDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259 >gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 263 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ ALA + L+ E F V G + I + + + D +ILD+GL I G EV Sbjct: 34 LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLEVC 93 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ ++ D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 94 RQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMRP 152 Query: 124 ---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 V G LS+++ A+ V + G I LT E+ ++E LS R L++ Sbjct: 153 VAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQL 212 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ + +G ++DV I LR+KL + A +I TV G GY + Sbjct: 213 LDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259 >gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis Antiqua] gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis FV-1] gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92] gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates Pi uptake (OmpR family) [Yersinia pseudotuberculosis IP 32953] gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CO92] gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pseudotuberculosis IP 31758] gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 225 >gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum PSI07] gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia solanacearum PSI07] Length = 232 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 7 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 67 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKIDEGHPVP-LLKTVRGLGYRL 228 >gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC 33656] gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC 33656] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A + L+ F V V + G G+ +FD ILDL L I GFE Sbjct: 3 RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKRIR-EKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228 >gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 269 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ I +L + +ILD+ + ++ G Sbjct: 42 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 101 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 102 MDVVKEVRKDSQI-PIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 160 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L++ D+ V G +I LT E+ ++ LL+ N + + Sbjct: 161 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 220 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ IETVWG GY + Sbjct: 221 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268 >gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] Length = 220 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK +AH +EL L E V V G D + + ++ D +ILD+ L + G Sbjct: 1 MKILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAEEFKPDVVILDIMLPGLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + +L+ + ++DKV GADDY+ KPF+ EEL+ARI+A+ RR Sbjct: 61 EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARRKE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + + +D V V G + L+ E+ ++ LL +N L+KE L+ ++ Sbjct: 121 RKEEVISSEG-IELYVDQHRVIVDGKEVDLSKTEFSLLYLLMKNENIVLSKEKILSSIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ +++V+I LRKKL + YI+T+ G GY R++ Sbjct: 180 DYDDERENLVEVYINYLRKKLGDKG---KYIKTIRGIGYSFRKD 220 >gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I L+ V T E+ +++ D ++LD L + G + Sbjct: 5 ILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMSGADF 64 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR P+ +L+ + DKV GL+SGADDYI+KPF+ EL+ARI+A+ RR+ Sbjct: 65 ARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRRRA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ G L ++ V + L E++++ L ++ L+ ++ Sbjct: 125 PEAADDVVEIGGLRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L N ++TV G GY L Sbjct: 185 GDHVFVEDRTVDVHIRRLRKALENVDKD-GLVQTVRGSGYRL 225 >gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 12/231 (5%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57 MR +L+++DDK ++ I + L++E + V GE+ ++ D +ILD+ + + Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + R +R + P+ +LS S DK+ GL +GADDY+ KPFN EL R++ ++R Sbjct: 61 NGIDTCRRIR-ETSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLR 119 Query: 118 RSRGHAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS + L + N V GH I LT +E++++ LL+ + + Sbjct: 120 RSTQYNVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + V I LR KL G I+TVWG GY + Sbjct: 180 AEDIFQQVWKEKYYVSNNTVMVHISNLRDKLEKELGY-KLIQTVWGVGYKI 229 >gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + IE LKSE N+ G++ +E D ++LD+ + + G+ Sbjct: 5 ILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIMMPVMDGWTA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR + P+ +L+ + E+++ G Q G D Y++KP + + LVA+I+A+++R+ Sbjct: 65 CKELR-KISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYSE 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L +N + V+V ++L+ KE++++ L K+ L++E L+ ++ Sbjct: 124 EENQNKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +D + +LR+KL + I TV G GY Sbjct: 184 GIDYYGDLRTVDTHVKRLREKLGVKSY---LIATVRGVGYKFE 223 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD + L+ + V + G DG+ + ++D ++LD+ L + G+ Sbjct: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ ALR + PV L+ ++D++RGLQ GADDY+ KPF+ ELV RIR ++RR Sbjct: 61 QVMSALRSKRDL-PVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++ V QG I LT KE+ ++ LL R+ L++ + + ++D Sbjct: 120 TREAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV I +LR K+ +A K I TV GY+ E Sbjct: 180 MNFDSDTNVVDVAIKRLRAKI-DAPFDKKLIHTVRSVGYMFSEE 222 >gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + I+L L+S + + + + D I D I D+ L ++ G Sbjct: 4 RIYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVMLPELDGIS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ ILS DKVRGL SG DDY++KPF EL AR+R+++RRS+ Sbjct: 64 AIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQH 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H++ + T L ++ + QG ++ LT KEYQ++ L K + +E LN+++ Sbjct: 124 HSKVIKTT-SLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV I LR KL + YI+T+ GY E+ + Sbjct: 183 DFVGESRALDVHIRSLRAKLGDDGHH--YIKTIRSVGYRFIEDGQ 225 >gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|49478095|ref|YP_037336.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196037738|ref|ZP_03105048.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|229092209|ref|ZP_04223390.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|49329651|gb|AAT60297.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196031008|gb|EDX69605.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|228691200|gb|EEL44964.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKGNIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLRKTVNTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9] gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum SS9] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSVNSKIVEFGEFRLNLGTREMFRGEAPMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + + Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGNE 238 >gi|324327183|gb|ADY22443.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 181 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 221 >gi|319408250|emb|CBI81903.1| two-component response regulator [Bartonella schoenbuchensis R1] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + + G+ G L + +D +++D L G Sbjct: 1 MKILVIEDDRETGRYLEKAFLEVGYTADIACDGDTGYSLAETGNYDVMVVDRMLPHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TPV ILS + ++D+V GL++G DDY++KP+ EL+ARI R+S Sbjct: 61 SIVSELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFLELLARIEVLQRRKS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ G+L ++ A TV+ G I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGGINIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDIP-LLHTVRGAGYMLKAPDK 226 >gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +L++ED+ +L+ ++ L E++ V G +E+ + + D ++LD + + G Sbjct: 4 HVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR ++ + TP+ L+ I DKV GL +GADDYI+KPF EEL+AR+R I R+ Sbjct: 64 LTVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L V+L A T EV G ++LT +E+ ++ + +++ L+ ++ Sbjct: 124 SNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D ++ LR K+ + K+ IETV G GY L Sbjct: 184 GMDFDGQENTVDAYVRYLRAKI-DLPNHKSLIETVRGIGYRL 224 >gi|190895522|ref|YP_001985814.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CIAT 652] gi|190699467|gb|ACE93551.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CIAT 652] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V E + D ++LDLGL D PG + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVQEVPNAESARQSVADDMPDLVVLDLGLPDTPGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQEWRDGGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G + L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V+I ++R+K+ YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYIRQIRQKIEKIPDQPYYITTETGVGYRLREP 229 >gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] Length = 258 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ ++ L +++ G++ +++ + D +ILD+ + G+ V Sbjct: 16 ILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGYYV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R STP+ +L+ + + D++ GL+ GADDY+ KPF+ +EL RI+ I+RR++ Sbjct: 76 CQEIRRE-SSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQKT 134 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G +L ++ + + V + LT E+ ++ELL + L++ L Sbjct: 135 LPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVNQAGQPLSRTDILTA 194 Query: 178 LYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ R +++++DV + +LR K+ +I T G GY+ R+ Sbjct: 195 IWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLFRK 242 >gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54] Length = 232 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V + L + D I+LD L G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + + PV +L+ S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L ++ + + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV I +LRK L +G ++ETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRFTAQVP 230 >gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1] gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIIL--DLGLTDIP 58 M+IL+++DDK + + + LK+E + G++ I D +++ D+ + ++ Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLST-TPDIVLMILDVMMPNMS 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RR Sbjct: 60 GIDVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 119 SRGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ ++ G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 119 SQKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADE 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G++ I+TVWG GY + Sbjct: 179 IFERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227 >gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V G + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGGSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ E V + G + IE CK +FD II+D+ + ++ GF Sbjct: 3 KLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVMMPELDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R TPV +LS D++ G + G DDY+ KPF+ +EL+ R+ AI++R + Sbjct: 63 ACREIR-KFTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKRGKV 121 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ L V+ DA+ V + G + +T KEY++ + + L++E +++ Sbjct: 122 KEEAASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRENLISN 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +D I LRK L A I T+ G GY E Sbjct: 182 VWGYDYYGDDRTLDTHIKLLRKSLGEYA---RLIVTLRGVGYRFEE 224 >gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946] Length = 219 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L L E + V G + ++ ++LDLGL D G Sbjct: 1 MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + PV ILS ++ D+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ GD+++NL ++ V V + +T KE+ ++ L +R T+ +E LY Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D+ ++V + LR+KL I+TV G GY L E Sbjct: 181 WQDDTSSNTLEVHMHNLRRKLGKD-----RIKTVRGVGYRLEE 218 >gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 11/231 (4%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR IL+ +D+ + + ++L+SE FNV GED + D IILD+ + G Sbjct: 1 MRNILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT-DLIILDIMMPIKSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F+ +R K S P+ L+ S DK +G+DD++SKPF+ EL++R++A++RR Sbjct: 60 FKACIEIR-EKTSAPILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRRY 118 Query: 120 RGHAQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + S++++ + V + I LT EY+++ L++ ++ + + Sbjct: 119 YIYKGKEAPESSDSIDINGLKINKTSNEVSIDNEEIILTEIEYRLLLLMASNRSKIFSAQ 178 Query: 173 MFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I LR KL YI+TVWG+GY + Sbjct: 179 NLYESVWNEPYFYTNNNTVMVHIRNLRSKLECDPQNPKYIKTVWGKGYRIE 229 >gi|46200280|ref|YP_005947.1| two-component response regulator [Thermus thermophilus HB27] gi|46197908|gb|AAS82320.1| two-component response regulator [Thermus thermophilus HB27] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 2/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD + + L+ E F V G + ++ D ++LD GL D+ G E Sbjct: 3 RVLLVEDDSQVGELVRRFLEREGFAVAWVRFGREALKRVGKEGADVVVLDRGLPDMEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR PV +L+G + E +V GL GADDY+ KPF+ EL+ARI+A++RR+ Sbjct: 63 VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L V+L+ + ++G + L+ E ++ + + T+ L ++ Sbjct: 123 EGRRRF--GPLEVDLEGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGP 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++D ++ LRKKL + +IETV G GY Sbjct: 181 EFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGYRF 220 >gi|293400684|ref|ZP_06644829.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305710|gb|EFE46954.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIED++ + I L+ + + G++ +++ FD +I+D L + G E Sbjct: 3 KVLLIEDEENIRKIISYDLRKAGHTIVESGDGQEALDIALKQPFDVLIIDWMLPHVSGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ LR + + + +L+ D + G DDY++KPF+ EL+AR+ A ++R Sbjct: 63 IVQKLRTQHVDSVMIMLTARDDETDILYAFDQGVDDYVTKPFSPRELLARVNAHMKRQSK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G+L +NL + ++ + LT KE+ ++E KN L+++ LN ++ Sbjct: 123 RMEKDLEIGELRINLKRREALLKDELLTLTKKEFDLLEYFVSNKNIVLSRDAILNDIWGF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+DV + KLR KL G +I++ G GY+L E Sbjct: 183 DYDGDTRIVDVHVFKLRTKLQ---GSNVHIKSSRGVGYLLEE 221 >gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 227 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDDK + + L L+ + + V GE G+EL +D I+LDL L G Sbjct: 5 IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKKSGK 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + R +TP+ I++ SI DKV L GA+DYI KPF EEL+ARIR R Sbjct: 65 ELCQEFR-KLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 D+ ++L AK V ++ ++LT E+ ++E K + ++E + ++ Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E KI+DV+I LRKK+ YI T+ G GY+ + Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDVDN---KYIHTIRGFGYMFQ 223 >gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 218 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K LA + L+ F + G + L + +DAIILDLGL G Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R I TPV +L+ + +K+ GL +GADDY++KPF ELVAR+ A+VRR+ Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S++ G + +++ A V +G I LT E++++ L + +++ ++H+Y Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++VFI ++RKK + IETV G GY + E Sbjct: 181 QDFDRDSNTVEVFIGRIRKK-----THSDLIETVRGLGYRINE 218 >gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125] gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125] Length = 232 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DDK + I + LK+E NV+ G + +E + ++LD+ + + G + Sbjct: 7 VLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQT 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R + P+ LS S DKV GLQ G DDY++KPFN EL+AR+++ +RR Sbjct: 67 TLKIR-EARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI ++++LDAK V+ G + LT EY++IELL + Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185 Query: 178 LYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + V I K+R+K+ +++ VWG GY + Sbjct: 186 VWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKME 231 >gi|319934752|ref|ZP_08009197.1| DNA-binding response regulator [Coprobacillus sp. 29_1] gi|319810129|gb|EFW06491.1| DNA-binding response regulator [Coprobacillus sp. 29_1] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + +IE+ LK++ ++VY + G++G+ + I+D+ + + G ++ Sbjct: 5 VLVVEDEIEICDAIEIYLKTQGYHVYKANNGQEGLNIISNQTIHLAIVDIMMPIMDGIQM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R P+ +LS S DK+ GL GADDY++KPF EL+AR+ + +RR Sbjct: 65 TMKVR-ENYDFPIIMLSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVSSQLRRYSRY 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ V G L +NLD K V V+G I +T E+++++LL + + Sbjct: 124 LNVILDQQHENSYVVGGLELNLDTKQVTVEGKIIKVTPIEFKILQLLMEYPGKVFSADNI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D + V + LR+K+ Y++ VWG GY + + Sbjct: 184 YESVWQ-EDAISTDTVMVHVRNLREKIEIDPKNPRYLKVVWGVGYKIEK 231 >gi|326772524|ref|ZP_08231808.1| phosphate regulon transcriptional regulatory protein PhoB [Actinomyces viscosus C505] gi|326637156|gb|EGE38058.1| phosphate regulon transcriptional regulatory protein PhoB [Actinomyces viscosus C505] Length = 242 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D+ + S+ L+ + V + G + +++ Y+ D I+ D+ + + G E+ Sbjct: 13 VLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEAMDILASYQVDIIVSDVLMPRMDGREL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R TP+ +L+ + + ++V L GADDY+SKPF+ EL +RIRA++RR+RG Sbjct: 73 VRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRRTRGV 132 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 AQ + G+L + ++ V + G + LT K +++ L T++ L Sbjct: 133 AQPLTSASRLTAGELLLERTSRRVTLSGREVTLTPKATMLLDYLMSHPGELHTRDALLAS 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + +D I ++R+ L + A YIETV GY R + Sbjct: 193 LWGIDFATSTRAVDHRIREIRQALGDDAANPTYIETVPSVGYRFRAEVR 241 >gi|299133554|ref|ZP_07026748.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591390|gb|EFI51591.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L + ++D +++D L G Sbjct: 14 MRLLIIEDDRESAEYLAKAFREVGHVAELAGDGEEGLALAQSGDYDVLVVDRMLPKRDGL 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR +TP ILS + ++D+++GL++G DDY+ KP++ EL+AR+ RR Sbjct: 74 SVIGTLREKGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 133 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL ++ + V I L +E++++E L +T+ M L +++ Sbjct: 134 GPSEETSYRVGDLELDRLSHQVRRGTTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 194 DYHFDPQTNVIDVHISRLRSKIDKGQERP-LLHTIRGAGYMIRD 236 >gi|319893322|ref|YP_004150197.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] gi|317163018|gb|ADV06561.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++DD + + + L+ + + GE +E + + D I+D+ + + GFE+ Sbjct: 6 LIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEKHTIDIAIVDIMMDGMDGFELC 65 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 L+ PV +L+ ++ DK R +G DDY++KPF EL+ RI+A++RR + Sbjct: 66 ETLKYDYEY-PVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIAT 124 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 ++L+ G+L+++ V+V+ + L KE++++ LL +E + ++ Sbjct: 125 ETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGIDY 184 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + + +DV I +LR +L YIETV G GY + ++A Sbjct: 185 EGDERTVDVHIKRLRARLKKLGAN-VYIETVRGIGYKVTQDA 225 >gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 115/220 (52%), Gaps = 1/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +DD+ + I L L+++ F + GE+ + + D ++D+ + G+ Sbjct: 2 IQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + ++ PV +++ DK++G G DDY+ KPF+ +E+VAR++A++RR R Sbjct: 62 ELTKEIK-EYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++I G++ ++ + L KE++++ L T++ + ++ Sbjct: 121 VEANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E E + +DV I +LR++L++ I+T+ G GY Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220 >gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122] gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122] Length = 238 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL +DD + + ++L SE + V G + + L + + FD ILD+ + G E Sbjct: 12 RILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVMMPKASGLE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR++ + P+ L+ S DKV GL +G DDY+ KPF+ EL+AR++A++RR R Sbjct: 71 VCERLRLSSNA-PILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRRYRQ 129 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G + ++ A+ V + LT EY+++ L+ + ++ Sbjct: 130 YGSAQGAQTGETIQAGPVLIDTRARRVSKGETPVALTDLEYEVLLALARNRGRVVSAREL 189 Query: 175 LNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ P+ + I LRKKL + TVWGRGY Sbjct: 190 YENVWRSMYLPQSNNTVMAHIKNLRKKLEADPRDPQIVRTVWGRGY 235 >gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + + L++ F + G++ +E + I+LD+ L + G E+ Sbjct: 2 IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLEL 61 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L L+ PV +L+ + DKV+ L +GADDY++KPF ELV+RI+A++RR++ Sbjct: 62 LSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRTQ 121 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q GD+ +N V G + LT KEY++++ L N +T++ L Sbjct: 122 KDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCLLED 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E + +DV + LR+KL + IETV G GY + E Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGKSGEK---IETVRGVGYRMSE 224 >gi|126651878|ref|ZP_01724079.1| two-component response regulator [Bacillus sp. B14905] gi|126591346|gb|EAZ85454.1| two-component response regulator [Bacillus sp. B14905] Length = 256 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 103/230 (44%), Gaps = 12/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+ A+ ++++L E F + ++ + C +D I+LD+ L D GF+ Sbjct: 21 ILLVDDESAILDMLQMVLTKEGFRQIDRASTAQEALNACNKKPYDMILLDVMLPDRSGFD 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R P+ ++ +S +K+ G G DDYI+KPFN E+VAR++A +RR Sbjct: 81 ICPFIR-ETTEAPILFITAKNSDLEKLTGFAMGGDDYITKPFNPLEIVARMKAQLRRVKL 139 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G VN A + V G I + YQ++ N TK Sbjct: 140 YEEERPLHLSSNMFIYDFGRFQVNERAGELMVDGQVISCPAQVYQLLLFFCKHPNQIFTK 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I ++R+++ + T+ G GY L Sbjct: 200 SQLYEAVWGDHSFGDDNTVTVHIGRIRERIEKDPKDPELLLTIRGLGYKL 249 >gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01] gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A S P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQVI 125 Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSTEESVVAFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ + YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRYKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM 15897] gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM 15897] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DDK + I+++L SE + V G++ +EL IILD+ + ++ G++ Sbjct: 4 KIMVVDDDKDIREVIQVLLSSEGYEVIEASNGKEALELVDDDTD-LIILDVMMPEMNGYQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR K P+ L+ DK G SG DDY++KPF+ EL R++A++RR Sbjct: 63 ACVLLR-EKTKAPILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRRYHV 121 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q TG++ VN +T + G +++LT EY ++E L + K ++ Sbjct: 122 YQGKGTTQEKQITYKTGNIEVNSAKRTASIDGEKLNLTDLEYNILEYLLMNKQQVISPSQ 181 Query: 174 FLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ I V I LR+K+ +I+T+WG+GY Sbjct: 182 LFEAIWHEEYYYGANNTIMVHIRHLRQKIEKDPTNPEHIKTIWGKGY 228 >gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 247 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 17/236 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIP 58 +L+++D+ + + L+++ F V G + + D +LD+GL D+ Sbjct: 4 HVLVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGLPDLD 63 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EVLR +R V +++ S DK+ GL GADDYI+KPF+ E+VAR++ ++RR Sbjct: 64 GLEVLRRVRAQSDLF-VILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVKTVLRR 122 Query: 119 SRGHAQSLIVTGDL-------------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 + +++ D + V + L+ E+ ++ + Sbjct: 123 RHEAGAPDVGPDVDPATVANILRFEGLTIDEDRREVTTASDPVTLSTLEFDLLVAFAEAP 182 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L ++ + ++IDV I LRK L++ A I TV G GY Sbjct: 183 GRVFSRAQLLEKVWGYDFYGDERVIDVHIRSLRKALADDASSPRVIGTVRGVGYKF 238 >gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + ++ + + V+ G + I+ D I+LD+ + + G E Sbjct: 3 KILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQASRQ-PDIILLDINMPEADGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ L+ DKV G +G DDYI KPF+ EEL ARI A +RR Sbjct: 62 VCRRIR-DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRRENR 120 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A V G LSV+ TV G I+L KE+Q++ELLS +KE ++ Sbjct: 121 SAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + ++ I +LR KLS G +IETVWG GY Sbjct: 181 SYDAEGDSSVVAEHIRRLRSKLSKYGEGS-HIETVWGMGYKWV 222 >gi|238925636|ref|YP_002939153.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656] gi|238877312|gb|ACR77019.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 114/219 (52%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E Sbjct: 3 KILIVEDDKELSLLFQKVLEKSGYQVKSASDGAQALEVLDREYIDLIISDIMMPVMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR A PV +++ SS +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 63 LVSELRSAGYQIPVLMITAKSSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQI 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + IV G ++ DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 123 LNEHKIVIGSTELDYDAMTVVTGDEALVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + I T+ G GY Sbjct: 183 ETEADPHTIEVHIGRIRERFKENPDFE--IVTMRGLGYK 219 >gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316] gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316] Length = 219 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F+V G+ G +DA++LDL L +I G Sbjct: 1 MRILLVEDDKLIGDGIKTGLSKLGFSVDWFTDGKTGQAALYSAPYDAVVLDLTLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LRA R + S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 61 EMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S + G + ++ + + G + L KE+ ++ELL L ++ LY+ Sbjct: 121 GQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 218 >gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 243 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + Y D ++LD+ + + G Sbjct: 9 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 69 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 128 Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++ DL ++L + V + LT E+ ++ELL LT Sbjct: 129 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 188 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 189 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 239 >gi|171779215|ref|ZP_02920186.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282271|gb|EDT47698.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + + LK+ F G+D + + D I+LD+ L G + Sbjct: 2 IYCVEDDDDIRELMLYTLKTAGFEAQGFPDGDDFWQAISIQQPDLILLDIMLPGSDGLAI 61 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L L + PV + + + DKV+GL GADDY+ KPF E+++RI+A+ R Sbjct: 62 LEKLEQTPTTAGIPVIMATAKGTEYDKVKGLDMGADDYLVKPFGMMEMISRIKAVLRRSE 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +GH ++ G+LS+++ V+ IHLT KE++++ LL N T++ L ++ Sbjct: 122 KGHVSKILKLGNLSLDVQNYVVKKDNQVIHLTLKEFELLALLLKNPNRVFTRQDLLKQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I LR KL +A +YI+T+ G GY L ++ Sbjct: 182 GDDFLGETRTVDVHIGTLRTKLGDAG---HYIQTIRGVGYRLEDD 223 >gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E V + G +G+ +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR A TPV L+ M S++D++ GL +G DDY+ KPF EL AR+ A R Sbjct: 61 TMVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ GDL + L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ I +LR K+ + + I+TV G GY + Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFDRELIQTVRGAGYRI 221 >gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ AL + L + V G +G+ + + Y D I+DLGL G Sbjct: 1 MRLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR + PV +L+ +D+V GL++GADDY+ KPF EL+AR++A++RR+ Sbjct: 61 ELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ L+++ ++T G RI LTG E++++ + L + L+K HLY Sbjct: 121 GWADPVLRCPPLALDTRSQTAWRDGARIELTGSEFRLLHYMMLHQGAVLSKTRLEEHLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +++VFI +LR+KL IET+ GRGY LR Sbjct: 181 DAAEHDSNVMEVFIRRLRRKLDPDGTL-QPIETLRGRGYRLR 221 >gi|328950115|ref|YP_004367450.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450439|gb|AEB11340.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+ED++++ + L L+ F V +G + D ++LD L D PG Sbjct: 3 RVLLVEDEESVRVGLRLGLRQAGFTVLEAATAAEGWAQLE--GCDVVVLDWMLPDEPGIR 60 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L LR PV +L+ ++ D+V GL GADDY+ KP + ELVAR++A++RR+ Sbjct: 61 FLERLRRTPRFEGLPVLMLTARAAEADRVEGLTRGADDYLVKPCSLPELVARLKALLRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L ++L+ V V+G + LT +E+ ++ L+ T+E L ++ Sbjct: 121 GRRRVVERPG--LVLDLERMEVRVEGRPVELTRREFDLLAHLARHAGRVFTREELLEQVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D + +LR+KL +A +IETV G+GY +E Sbjct: 179 GPDFFGTARTVDQHVAQLREKLGDAPNAPRFIETVRGKGYRFKE 222 >gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 340 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + Y D ++LD+ + + G Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 165 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 166 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 225 Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++ DL ++L + V + LT E+ ++ELL LT Sbjct: 226 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 285 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 286 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 336 >gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response [Aurantimonas manganoxydans SI85-9A1] gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response [Aurantimonas manganoxydans SI85-9A1] Length = 233 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + V G +E + + I D+ + + G E+ Sbjct: 4 IALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADDYI KPF++ LV R+RAI+RR Sbjct: 64 LRRLR-QKSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRRGAPR 122 Query: 123 AQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L ++ + T GH + LT E+ ++ L+ R +++ Sbjct: 123 EAAKPGGPVPESSLERGQLVMDQERHTCTWTGHPVTLTVTEFLILHSLAQRPGVVKSRDA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK + IET++G GY RE Sbjct: 183 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRFRE 232 >gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V + GE+ + L D I+LD + ++ G EV Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R S PV +LS S DKVRGL++GADDY+ KP++ EL+AR+R+ +RR R Sbjct: 68 CRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRRVR 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PSTVGLRLEYEDIVLDAETHKVSRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ G + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQHGGD-DPVRTVRGAGYAL 228 >gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 298 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD L + L + + V G + +F D ++LDL L G + Sbjct: 64 IWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQRPDLVVLDLMLPGDDGLTL 123 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV +L+ D++ GL+ GADDY++KPF EL+ARI A++RR Sbjct: 124 LRRLRDSSDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRRRGTM 183 Query: 123 AQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 GD ++L A+T+E Q + +T E+ ++ + L++E + Sbjct: 184 PAGTPLADGELVHFGDNVLDLSARTLERQNQPVTITSGEFSLLAAFVQHPHRPLSRERLI 243 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + +DV + ++R+ + Y++TVWG GYV + + Sbjct: 244 ELARGPASDTDTRSMDVQVSRVRRLVEPDPSRPRYLQTVWGYGYVFVPDGQ 294 >gi|83950912|ref|ZP_00959645.1| DNA-binding response regulator [Roseovarius nubinhibens ISM] gi|83838811|gb|EAP78107.1| DNA-binding response regulator [Roseovarius nubinhibens ISM] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ L E+F+V+ G + + K FD +ILD+GL D G Sbjct: 6 KILLVDDDEDLREALSEQLVMTEDFDVFEAGNGSEALSRVKEGIFDLVILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + +P+ +L+G D + GL +GA+DY+SKPF L+AR+RA +R+ Sbjct: 66 ELCRLMRKQGVKSPIVMLTGHDGDADTILGLDAGANDYVSKPFKFPVLLARLRAQLRQHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + K V+ +I LT KE +++ L + + +++ L+ ++ Sbjct: 126 QSEDAVFQLGPYTFRPAVKMLVDEDDRKIRLTEKETNILKFLYRAPDGVVARDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRL 226 >gi|222112594|ref|YP_002554858.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221732038|gb|ACM34858.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + + + V G L + +FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLCAQLVQAIAAAGHTVEHASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ S+ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRRWRAAGRNMPVLILTARSAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL RK L + + H+Y Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLPRTLLSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKKL IETV G GY L + Sbjct: 181 HDSDRDSNTIEVFVGRLRKKLP-----PGSIETVRGLGYRLVD 218 >gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] Length = 221 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+G + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 63 ICKIMRGQSDV-PIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +V++ID I LRKKL YI+TV G GY + Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 220 >gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum EbN1] gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum EbN1] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD+ +A+ + LK + V G + +D +ILDLGL +PG Sbjct: 1 MRILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLPKLPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR K + PV IL+ +E++VRGL +GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRR-G 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G LS + + ++ G + L+ +E ++E+ +LR ++K+ ++HL Sbjct: 120 TGQPRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +E I+V++ +LRKKL ++ I TV G GY L +T Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCLENPDAVQTA 226 >gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 233 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + V G +G+ L + + IILD+ + D+ GF Sbjct: 4 VLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K + PV +L+ S EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 64 QVLQKIR-EKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122 Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ D+ ++ +TV VQ + LTGKE+ ++ L+ K TK+ Sbjct: 123 TLNPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + + FI KLRKK+ YI+TV G GY + A Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233 >gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED+ L + L++ + G + + + I+LDL L G V Sbjct: 10 IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVPAVHEHSPALILLDLMLPGSDGLTV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 70 CRELR-RFTDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ L ++ QG + LT E+++++ L+ + ++E LN+LYD Sbjct: 129 LENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDDY 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K++I +V+G GY Sbjct: 189 RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWESE 230 >gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01] gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-03] gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-07] gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-22] gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-26] gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-32] gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-12] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD AL+ I L+ + + V V GE +E + D ++LD L I G EV Sbjct: 6 LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLPGISGLEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +LS D +RGL +GADDY+ KPF+ E L AR++A++RR Sbjct: 66 CRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRRLP 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++L L ++ + VE G + L EY+++E L ++E L H ++ Sbjct: 126 PADKTLRF-DTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAWE 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E++ +DV I +LR+ L+ ++ I TV RGY L Sbjct: 185 RSSFVELRTVDVHIRRLRQTLNE-GDEQDLIRTVRARGYAL 224 >gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 2/232 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD + ++ + L++ +V G + L D ++LDLGL D+ G Sbjct: 1 MRVLVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGLPDMEGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRS 119 EV++ LR P+ +LS S +KVR L SGADDY++KPF +EL+AR+R A R Sbjct: 61 EVIQRLRG-WSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSV 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ T +V+L AK V +G + LT E+ ++E+L+ +++ L+ ++ Sbjct: 120 RVDEAPVVRTPSFTVDLGAKRVLREGEEVRLTPTEWHILEILARHAGQLVSQRQLLHDVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + E + V++ +LR+KL Y+ T GRGY + + Sbjct: 180 GPAYQSETNYLRVYMAQLRRKLEPDPACPRYLITEAGRGYRFERAGSAQPGD 231 >gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 241 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D + ++ L+ F V G++ L + F ++LDL L G Sbjct: 8 HILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLMLPGEDGLT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV +L+ M D++ GL+ GADDY++KPFN EL+ARIRA++RR+ Sbjct: 68 LCRDLRARSSL-PVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANL 126 Query: 122 HAQSLI------VTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S ++L + V+ G I L+ E+ ++++ R L+++ Sbjct: 127 MPDSQEELPERLHFDHWQLDLARRELVDEHGVAISLSTAEFDLLKVFLERPKRVLSRDQL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L+ + + ID + +LR+KL I+TVWG GY+ + ++ Sbjct: 187 LDMARGREAQAFDRAIDTLVSRLRRKLEVDPKKPELIKTVWGGGYMFSAEVRHDS 241 >gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232] gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + +I L++E F V G ++ + ++ D ++LD+ L G E Sbjct: 21 RVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLPGFDGLE 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R + A+ PV +L+ D + GL GADDY++KPF+ EL AR+ ++RR Sbjct: 81 VCRRV-QARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L ++ + V V+G +HLT E+ ++ L+ L++E Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANTPRAVLSREQL 199 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPA 245 >gi|300864987|ref|ZP_07109818.1| multi-component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337022|emb|CBN54968.1| multi-component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 620 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 122/244 (50%), Gaps = 9/244 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L+ ++ +L ++ + + G+ G+EL E+D I+LD+ + + G Sbjct: 1 MKILLVDDDRLLSATLAKVLGVNHYAIDLASDGQAGLELATAIEYDLILLDVQVPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +L+ S D V G +GADDYISKP E L+ARIR ++RRS+ Sbjct: 61 SLCRQLRSQGYRKPILLLTANDSDADVVAGFDAGADDYISKPCATEVLLARIRTLLRRSQ 120 Query: 121 GHAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G+L ++LD+ V I LT EY ++EL + ++ Sbjct: 121 ALSPRDSAQNLLANTLTWGNLCLDLDSGRVTFDKQIISLTATEYNLLELFLRNPDRIFSR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L+ L+ D P + I I +RKKL + IETV+G GY L+ K Sbjct: 181 SAILDRLWGLEDAPTDRAIITHIKDVRKKLKAGGLSEEIIETVYGMGYRLKSQPKAVPSN 240 Query: 232 YLET 235 + Sbjct: 241 ATKP 244 Score = 63.1 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + L V + E+ + D ++LD+ + I G E Sbjct: 499 KVLIVDDDVLMLARLSDFLTPWAIEVITLTEPQQFWEVLISTKPDLVVLDIEMPFINGLE 558 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + +R P+ +++ + E + +GADD+ISKP Sbjct: 559 LCQVVRQDIQWENLPILVVTAHTDPESLQKAFIAGADDFISKPV 602 Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPG 59 R+L+++DD L ++ ++ + + + L D ++LDL T+ G Sbjct: 374 RLLVVDDDIVLTERLKAESEAWGLRIKIASNLTNARALLALSMPDVMLLDLSFAETEEDG 433 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 +L+ + P+ + +G S+ D++ + GA ++ KP Sbjct: 434 LTLLQEVTKRSPHLPIIVFTGRDSLADRLAVSRLGARQFLHKP 476 >gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA+ R Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+ +E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL K+ I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228 >gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 233 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 MR +L+++D+K +A IEL LK+EN+NV+ G+D + + D ILD+ L DI Sbjct: 1 MRQSTVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFE+L+ +R+ + PV +L+ S DK+ GL GADDYI KPF EL+AR++A +R Sbjct: 61 DGFEILKQIRL-THNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLR 119 Query: 118 RSRGHAQSLIVTGDLS-------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + + + + +N I LT E+ ++ +L+ + ++ Sbjct: 120 RFTRYNDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVIS 179 Query: 171 KEMFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ + + V I LR+KL G K I+TVWG GY + E Sbjct: 180 SENLFEQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233 >gi|52142292|ref|YP_084536.1| response regulator [Bacillus cereus E33L] gi|51975761|gb|AAU17311.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ E+ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK RG SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 139/231 (60%), Gaps = 1/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +++ L ++++ V GE+G+ +DA I+D+GL + G Sbjct: 1 MRLLLVEDDIELQTNLKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R++R + P+ IL+ S +DKV GL +GADDY++KPF+ +ELVAR++A++RRS Sbjct: 61 SLIRSVRQKERDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G S+N + + I+L+G EY++ E L L + +K + H+YD Sbjct: 121 GKASPLVYNGPFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + +I+VFI +LRKKL N IET+ G+GY L+ A + + + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLKILAPESSAD 230 >gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLRKTVNTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 7/235 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ + +E+ L+ ENF + G+ ++ K +D I+LD+ L D+ GFE Sbjct: 6 ILVVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLSGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ +S S+ DK+ GL G DDYI+KPFN E++ARI+AI+RR R Sbjct: 66 LCTEIR-KHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQRI 124 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G LS + ++ T+ V+G + T KE +++ N T Sbjct: 125 MENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ E K + + I KLRKK+ + I + G GY + CE Sbjct: 185 LVWGNDVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKFIPPNEALACE 239 >gi|322383663|ref|ZP_08057414.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151875|gb|EFX44818.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 241 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M++L++ED++A+ + + LK + V + GE+ I L + + ILD+ L G Sbjct: 6 MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 65 Query: 60 -FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 F+V LRV + +L+ S DKV GL+ GADDYISKPF+ ELVARI A+ RR Sbjct: 66 GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 125 Query: 119 SRG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++++ G ++LD + + G I LT E+ ++ + N +++++ Sbjct: 126 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + KI+DV I ++R+K+ YIETVWG GY+ + + Sbjct: 186 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 235 >gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI R Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 235 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + L+ + F V + G + +++ + + DA ILD+ + + GFE Sbjct: 9 KVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPGMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 69 LLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 128 Query: 122 HAQSLIVTGDLSVNL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + +L D V G I L+ E+ ++ L L L+K L++ Sbjct: 129 TADADSDSTLRYADLTLNDDTHEVTKSGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 189 VWHYDFGGDGNVVESYISYLRRKV--DTGDVPLIHTVRGVGYVLRTP 233 >gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827] gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V E + I+LDL L G Sbjct: 6 KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSQDDAIITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E +E ++V VT G++ + L D +ILD + G E Sbjct: 15 KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K + P+ +L+ + +D++RGL++GADDY++KPF+ EL+AR+ A++RR Sbjct: 75 VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRRI 134 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GDL+++ A V +G + L EY++++ ++ L+ + Sbjct: 135 RPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDGV 194 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + E++ +DV I +LRK + G K+ + TV GY L Sbjct: 195 WGTESDIELRTVDVHIRRLRKAIEIE-GAKDPVRTVRSAGYSLE 237 >gi|189425983|ref|YP_001953160.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189422242|gb|ACD96640.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 233 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +A I+ L+ +F V D +E + A+ILDLGL D G E+ Sbjct: 5 ILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGLPDKSGEEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + L+ S PV +L+ SS E+++ G GADDY+ KP + ELV R++A+++R G Sbjct: 65 CQELK-DLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYDGA 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L ++ TV +G +T E+++++ L+ T +++ ++ Sbjct: 124 GAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDELVSKA 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +D I LR+K+ + +I+TV+G GY+ Sbjct: 184 LGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLF 226 >gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 220 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 89/222 (40%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ LA IEL L+ EN++V + G+ G+E +D I+LDL L +I G E Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +TP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRA++RR Sbjct: 63 ICRQIR-QNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQPQ 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I + ++ DA V V G + LT EY ++ LL +N L +E + ++ Sbjct: 122 KNLIDIKG--IIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++DV+I LR KL G IETV G GYV+R+ Sbjct: 180 DTEVETNVVDVYIRYLRNKLKP-FGKDKCIETVRGVGYVVRQ 220 >gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E+ L+ ENF ++ G++ ++L K F+ I+LD+ L DI GF Sbjct: 5 KILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPDISGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +R TP+ +S ++ DK+ GL G DDYI+KPFN E++ARI+AI+RR + Sbjct: 65 ELCTEIR-RNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123 Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + G + ++ + VQ + T KE +++ N T Sbjct: 124 MYERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E K + + I KLRKKL + I + G GY + Sbjct: 184 RVWGNDVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPNE 233 >gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ L + L+SE + V G++ + D +ILD L + G E Sbjct: 4 HILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLPGLSGIE 63 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R PV +L+ ++VRGL +GADDY+ KPF+ EL+AR+RA+ R Sbjct: 64 LCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRA 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H +L+ GD+ ++ + V G +HL E++++E L ++E L+ + Sbjct: 124 KPEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +DV + +LRK ++ + I TV G GY E Sbjct: 184 WGQDVYIDERTVDVHVGRLRKAINR-GRQSDPIRTVRGAGYSFNE 227 >gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SSMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227 >gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica HKI 454] gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica HKI 454] Length = 333 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + L+++ + V G I +D ++LDLGL G Sbjct: 115 MRVLLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQRDGL 174 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA+VRR Sbjct: 175 DVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALVRRQA 234 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+++I L+++ A+ V ++G + L+ +EY ++E L R L+K +Y Sbjct: 235 GRAETVIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVLSKSQLEEKIYG 294 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL I TV G GY++ Sbjct: 295 WGEEIGSNTVEVYIHSLRKKLGA-----ELIRTVRGLGYMM 330 >gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ ++E + G+D I +ILDL + ++ G Sbjct: 1 MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVIRQVRKDSSI-PILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A GG+ IETVWG GY + Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >gi|170755642|ref|YP_001780597.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120854|gb|ACA44690.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 240 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG + E D +ILD+ L D G+ Sbjct: 10 KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKTEPDIVILDIMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRSKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +N+ + G I L KE +I + N ++KE Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGELIELKPKELALITFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235 >gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 15/234 (6%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ +L + L++ F V G ++L + + D I+LD+GL + G EV Sbjct: 15 LVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLPGMDGIEVC 74 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + V +L+ + D + GL GADDYI+KPF+ EL+AR++ ++RR R A Sbjct: 75 RTLRTFTDAY-VVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRRPRQSA 133 Query: 124 QSLI-------------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 V G L +++ A+ V + G + LT E+ +++ LS R + Sbjct: 134 ADRPGAAARGSGEEAARVFGALVIDVLAREVSLGGQPVELTRTEFDLLDTLSERPRVAFS 193 Query: 171 KEMFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + L ++ G + ++DV I +LR+KL + A YI T+ G GY + E Sbjct: 194 RSLLLERIWGGGAWAGDEHLVDVHIGRLRRKLGDDAREAKYIRTIRGIGYRMGE 247 >gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ + + LK F+VY G +G+E+ ++D II+D L G E Sbjct: 4 KILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQYDVIIVDWMLPYHDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 ++ R + + +L+ D + +G DDY+SKPF+ EL ARI A R Sbjct: 64 LVAKFRDRGLKAILIMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHLRRVDM 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H I GD+ +NLD TV V + + LT KE+ ++ L +N LT++ L+ ++ Sbjct: 124 NHELRRIEVGDIVINLDQHTVVVGSNPVELTKKEFDLLIYLLQNENIVLTRDQILSEIWH 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + +I+DV I KLR KL ++ I ++ G GYV Sbjct: 184 FDYDGDTRIVDVHIFKLRTKLEDSNVK---INSLRGVGYV 220 >gi|229030926|ref|ZP_04186945.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228730420|gb|EEL81381.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLNADMITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTADFQ-ITTVRGLGYKLE 223 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V + GE+ + L D I+LD + ++ G EV Sbjct: 9 VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 68 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R + + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R+ +RR R Sbjct: 69 CRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRRVR 128 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 129 PAATGERLEFEDIVLDASSHRVSRGKSELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ GG + + TV G GY L Sbjct: 189 GRDIYVDTRTVDVHIGRLRKALTQ-FGGSDPLRTVRGAGYAL 229 >gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC 10782] gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC 10782] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARI AI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 14/234 (5%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 MR +L++ED+ +A+ I L F+ ++ G + I + + D IILDL L Sbjct: 1 MRNRNITVLIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSLP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 D G E+ R +R + + S S DKV GL GADDY++KPF+ ELVARI A Sbjct: 61 DCDGIEICRKIRENSNVAILIL-SARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAH 119 Query: 116 VRRSRGHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 +RR Q +I ++ +N I L+ KE++++ L+ +N Sbjct: 120 LRRQDRWLQHSGGQMGVDVIHIDNMVINKQEYIFLRDSKPIPLSAKEFELLFFLAKNRNQ 179 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +K L+ ++ + I V+I +LR+K+ + Y++TVWG GY Sbjct: 180 VFSKGQLLDAVWGYETYGDENTITVYIRRLREKIEVSPSHPVYLQTVWGVGYKF 233 >gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + L+ +++ V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ A V G + LT E++++ L + +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTAASKASVDGTTLKLTSHEFRLLSYLMHHMDQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ +LRKK+ IETV G GY + + Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGV-----ELIETVRGLGYRMTRPENE 222 >gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 63 ICKIMRGQSDV-PIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +V++ID I LRKKL YI+TV G GY + Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLEI-----PYIKTVKGIGYKIE 220 >gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + + L+S F + G +E + ++LD+ L G E+ Sbjct: 2 IFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMEL 61 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR L+ PV +++ + DKV+GL +GADDY++KPF EL++RI+A++RRS Sbjct: 62 LRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRSA 121 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G++ ++ V V G ++LT KEY++++ L N LT++ L Sbjct: 122 KGSVSSEDTFEIGEIRLDPKKHEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLED 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E + +DV + LR+KL +A IETV G GY + Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGDAGEQ---IETVRGVGYRM 222 >gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str. Toulouse] gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str. Toulouse] Length = 222 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + ++S + G++ L +DA+ILD+GL + G Sbjct: 1 MRILIVEDDRNLNHQLAEAVRSAGYVSDSAFDGQEAYFLGSTESYDAVILDIGLPLLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV +L+ DKV G+ +GADDY+ KPF+ EEL+AR+RA++RRS Sbjct: 61 SVVEKWRKEGHLMPVLMLTARDRWSDKVFGIDAGADDYVVKPFHLEELMARLRALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ V V G I LT E++++ L ++K HLYD Sbjct: 121 GHATSALCCGAVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCGRVVSKTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++VF+ +LR+KL IET+ G GY +R Sbjct: 181 QDFDKDSNTVEVFVGRLRRKLGVD-----VIETIRGMGYRVR 217 >gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222] gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32] gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222] gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A S P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQVI 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ + YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|170738625|ref|YP_001767280.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168192899|gb|ACA14846.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + G DG L + +D +++D L + G Sbjct: 1 MRLLIIEDDREAASYLAKAFREAGHVADLAADGLDGYALAREGSYDVLVVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR--AIVRR 118 ++R+LR + TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR+ A R Sbjct: 61 SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYVPKPYAFSELLARVEVLARRRG 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ + V G I L +E++++E L +T+ M L H+ Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D +P+ +IDV + +LR K+ I TV G GY++R + Sbjct: 181 WDYHFDPQTNVIDVHVSRLRAKVDKGFDRP-MIHTVRGAGYMVRAGGE 227 >gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ + ++ LK+ F V + G L +FD +ILDLGL G Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R P+ +L+ ++D V+ L+ GA+DY++KPF EEL+ARI+ +R Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +++ + G+LS++L + V + L+ KE+ + E+L ++KE LN Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P II+V+I LR+K + YIETV G GY L Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKFGS-----QYIETVRGMGYRL 221 >gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 219 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+++ I++ L + + G + + + FD I+LD+ L +I G+E Sbjct: 3 RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIMLPEIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + PV L+ ++ EDKV+GL++GADDY++KPF EL+AR+ ++RR Sbjct: 63 LMDYIR--PLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR-CQ 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S + GDL +++ A+ V+ QG ++LT KEY+++ LL KN L ++ ++ Sbjct: 120 KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGS 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D+ + +LRKK+ I+TV+ GY L ++ Sbjct: 180 GYMGDSRTVDLHVQRLRKKIGWEHK----IKTVYKVGYRLEDS 218 >gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++++ I++ L+ E F ++ G + I L K IILD+ L I G+ Sbjct: 9 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV ++ ++ + +L+ I+D+V+GL GADDY+ KPF+ +EL+ARI A +R S Sbjct: 69 EVCSEIK-KWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+ +N A + + + + L+ EY +++ L L+K L ++ Sbjct: 128 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +V I++V+I LR K+ + + I TV G GY Sbjct: 188 FDFNGDVNIVEVYIRYLRDKIGDN--EHSIIRTVRGVGYK 225 >gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 242 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L++ ++ Y G D +E + + I+LDL L G + Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLMLPGCDGLTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ S D++ GL+ GADDYI KPF+ E+V R+R ++RR Sbjct: 73 CRTIR-QFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131 Query: 123 AQSLIVTGDLS----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L ++ G + LT E+++++ LS ++E L+ L Sbjct: 132 NDGLKAAEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 YD + ID I LR+KL ++I TV+G GY +E Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241 >gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL LK++ +NV G++ ++ + D ILD+ L D+ GF Sbjct: 32 MNILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVDGF 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 92 QILKQIR-EKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYT 150 Query: 121 GHAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ N + + LT E+ ++ LL + ++ E Sbjct: 151 QYNEGTKDEGDVIDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 210 Query: 175 LNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + V I LR+K++ G ++I+TVWG GY + E Sbjct: 211 FHKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVEE 260 >gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa W1219] gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa W1219] Length = 222 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I+ K E + + G + +E K + D +++D+ + ++ GF Sbjct: 4 ILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHSIDLVVMDVMMPELDGFSA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L ++ + + PV +L+ + DKV G + G DDY+ KPF+ + L+ R+RAI++R GH Sbjct: 64 LEKMKALQPNLPVILLTALGQEYDKVHGFELGVDDYVEKPFSPKVLLLRMRAILQRVYGH 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ A V + + L+ KEY ++ L K L++E L ++ Sbjct: 124 QLEGYEKEGLKVDYQAHKVMLNNCVLSLSPKEYDLLVYLIKNKGIALSREQLLRQVWGMD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D I LRK L + A I T+ G GY E Sbjct: 184 FFGDDRTLDTHIKLLRKNLQDFAKH---IVTIRGVGYRYDEE 222 >gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD +A I L+ V G + +D +ILDLGL + G Sbjct: 1 MRILLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYDLLILDLGLPRMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K + PV IL+ ++D+VRGL +GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRR-G 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G LS + + V++ G + L+ +E ++E+ LR ++K+ ++HL Sbjct: 120 TGQPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E I+V++ +LRKKL ++ I TV G GY L Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCLE 218 >gi|218134349|ref|ZP_03463153.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC 43243] gi|217989734|gb|EEC55745.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC 43243] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + +L+ + V G +E+ D II D+ + + G+E+ Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIMMPVMDGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A PV +++ S +D +G SG+DDY+ KP N E+V R+ A++RR++ Sbjct: 64 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQIL 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + IV G + DA TV + L KE+ ++ L+ T TK+ ++ ++ Sbjct: 124 NEHKIVIGSTEFDYDAMTVITDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYE 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + I+V I ++R++ + + I T+ G GY Sbjct: 184 TEADPHTIEVHIGRIRERFKDNPDFE--IVTMRGIGYK 219 >gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101] gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101] Length = 223 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E V + G +G+ +D +++D L ++ G Sbjct: 1 MKLLVVEDDATTGSYIARGLREEGHTVDLVPHGREGLFQASSGSYDVLVIDRMLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR A +TPV L+ M S++D++ GL +G DDY+ KPF EL AR+ A R Sbjct: 61 TLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRPQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ GDL ++L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 VLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ I +LR K+ + + I TV G GY + Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFDRELIHTVRGAGYRI 221 >gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum centenum SW] gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum centenum SW] Length = 219 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD+AL + L + + V GE+ L + +DA++LDLGL G Sbjct: 1 MRVLVAEDDEALRRQLRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I TPV IL+ + ++KV G+ +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 SALRGWRQQGIVTPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++ V V G + LT E ++++ L + +++ H+Y Sbjct: 121 GHAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LR+KL I T G GY + Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----VIRTERGLGYRM 216 >gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ L I+ +++E+ + G++G++ K E+ ++LD+ + + GFE Sbjct: 3 KILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R P+ + + + KVRGL++GADDY++KPF+ +EL+ARI +++RR Sbjct: 63 TLEEIRKENSL-PILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + L ++L+ ++V + L KE+ ++ + + LTK+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I +LRKKL YI+TV G GY + Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230 >gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] Length = 232 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V + L + D I+LD L G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + + PV +L+ S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L ++ + + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G ++ETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRF 225 >gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7] gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050 [Bacillus amyloliquefaciens DSM 7] gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens TA208] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + + LM++ F+V + GE ++L + D IILD+ + + GFEV Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A+R + P+ +L+ DKV+G SGADDY+ KPF EL AR++A+++R R Sbjct: 64 SEAVR-SFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ L+ G ++++ ++TV G + L +E++++ L+ N T ++E + ++ Sbjct: 123 AEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIWGF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR++ I TV G GY Sbjct: 183 DYEGDERTVDVHIKRLRERFPEK-DYPFAIHTVRGLGYRFV 222 >gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+L+L L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLNLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50] gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)] gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD L +E L + F V E L F ++LDL L G + Sbjct: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++I G +NL + + + + LT E+ +++ L L+++ + Sbjct: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A IEL L E + V G DG ++ K ++D I+LD+ L + G E Sbjct: 4 KILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +LR LR PV +L+ DKV GL GADDY++KPF EEL+ARIR ++R Sbjct: 64 ILRRLR-ESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +LI +LS++L+ +V + I LT KE+ ++ L KN L+++ L Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++DV+I LR K+ + + YI TV G GYV+++ Sbjct: 183 VWGFDYFGDTNVVDVYIRYLRSKI-DDKYKEKYIYTVRGVGYVVKDE 228 >gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD A + L+ +V G DG+ L E+DA+I+D L + G Sbjct: 1 MKLLLVEDDVQAATYLAKGLEESGHSVDRAANGTDGLHLAMTGEYDALIVDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ A R A +TPV ILS ++D+V GL++G DDY++KP+ EL+ARI A+ RR + Sbjct: 61 GLIAAYRAAGRATPVLILSARGEVDDRVTGLKAGGDDYLTKPYAFSELLARIEALTRRMQ 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S DL ++ V + I L +E+++++ L +T+ M L ++ Sbjct: 121 TRDSSDTLAVADLVLDRVRHKVMRRDQPILLQPREFRLLDYLMRHAGQVVTRTMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P+ +IDV I +LR K+ + TV G GYVL + Sbjct: 181 GYHFDPQTNVIDVHISRLRSKIDRDFDTP-LLHTVRGAGYVLSD 223 >gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L I+ L +E + V G++ + L + E +ILD+ + ++ G+ V Sbjct: 5 ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELDGWSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR----AIVRR 118 R +R + PV +L+ + +D + G + GADDY++KPF+ L+AR + + Sbjct: 65 CRRIR-KTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + V+ ++TV+V G I+LT E++++ L + +T+E + + Sbjct: 124 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ++ I LR KL + + I TV GY N Sbjct: 184 WGYEFSGDDRTVNSHIRNLRTKLGDKS---KCIITVVRAGYKFEGNV 227 >gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + L+ V D G+DG+ L FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R STPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120 Query: 120 RGHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R L DL ++L +++ G RI L +E++++E L +T+ M L Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P+ +IDV + +LR+K+ + I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKV-DKPFDTPLIHTIRNAGYMLRAE 226 >gi|153939612|ref|YP_001390321.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935508|gb|ABS41006.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318412|gb|ADF98789.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 240 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG + E D +ILD+ L D G+ Sbjct: 10 KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRSKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +N+ + G I L KE +I + N ++KE Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGEIIELKPKELALISFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLV 235 >gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 220 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++ L F V GE + F A++LDLGL G Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV +L+ +EDKVRGL GADDY+ KPF+ +E+ AR+RA++RR+ Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + L+ GD+ ++ A++V +G + LTG+E+ ++ +L LT+ M LY Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++V + LR+KL N I TV G GY+ Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGND-----VIRTVRGVGYM 215 >gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 245 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + + L+ E + V G + I + + DA++LD+ L D+ G Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGLT 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 81 VLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 141 AAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG I T G GY+++ Sbjct: 201 WSYDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLIKP 243 >gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 237 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 17/237 (7%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL EDD+A+ H++E L E + V G + + D ++LD+ + I G +V Sbjct: 2 LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMPGIDGLQVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR TP+ +L+ + +D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ Sbjct: 62 RVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPDG 121 Query: 124 QSLIVTGDL----------------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + + +++ A+ + LT E++++ELL Sbjct: 122 MAPVGAAPKAVAPELPQGRIEAAGLRMDIQARRAWRGTRELELTRTEFELLELLVRNAGI 181 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L + ++ P K + V++ LR+KL + G I TV G GYVLRE+ Sbjct: 182 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPQLIHTVRGVGYVLRED 237 >gi|237802299|ref|ZP_04590760.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025156|gb|EGI05212.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLTRLRKTVNTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|229191306|ref|ZP_04318292.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228592111|gb|EEK49944.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++L L E ++V T G I++ + + D IILD L + G + Sbjct: 4 RVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMDGND 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L+ K + P+ +LS + D++ G++ GADDYI+KPF+ + L A++ A ++R+ Sbjct: 64 ICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATIKRA 123 Query: 120 RGHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +N ++ + + LT EY ++ L + T+E Sbjct: 124 AQNKDLSHDEDILRHEKLVMNKADFSITYEEQPVKLTAVEYNLLYFLCKKPGRVYTRERI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L + + +DV I LR+K+ G ++YIETV G GY ++ Sbjct: 184 LEEIRGDDVIITGRTVDVHILSLRRKI---PGFESYIETVRGVGYRIK 228 >gi|329667413|gb|AEB93361.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+++LA I+ L+ E + V G++G+E + + I+LD L G Sbjct: 5 KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWMLPVYDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R P+ +L+ + D L G DDY++KPF EEL ARIR I+RR Sbjct: 65 VLRRIR-KVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ L ++L + +G I+LT KEY ++ L +++ L+ Sbjct: 124 EKRRVVSSTLEFSVLKIDLASHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + +DV+I LR KL +N I+TV G GY LR+ +E Sbjct: 184 VWGYDFIGQTNTVDVYIRALRNKLGKY---RNLIKTVRGYGYCLRKVDDNE 231 >gi|327190898|gb|EGE57954.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CNPAF512] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V + D ++LDLGL D PG + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVREAPNAASARQSVADDMPDLVVLDLGLPDTPGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G + L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V+I ++R+K+ +I T G GY LRE Sbjct: 187 GPAADVQ--YLRVYIRQIRQKIEKIPDQPYFITTETGVGYRLREP 229 >gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 242 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L++ ++ + G D IE + + I+LDL L G + Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLMLPGCDGLTI 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ S D++ GL+ GADDYI KPF+ E+V R+R ++RR Sbjct: 73 CRTIR-QFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131 Query: 123 AQSLIVTGDLS----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ G + LT E+++++ LS ++E L+ L Sbjct: 132 NDGMKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 YD + ID I LR+KL ++I TV+G GY +E Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241 >gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606] gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606] Length = 239 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD L +E L + F V E L F ++LDL L G + Sbjct: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++I G +NL + + + + LT E+ +++ L L+++ + Sbjct: 127 LPGTPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N + IDV I +LR+ + YI+TVWG GYV + Sbjct: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|258654798|ref|YP_003203954.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558023|gb|ACV80965.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 252 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+++L+ + L L+ E + V G I + + D ++LD+ L DI G Sbjct: 27 IRVLVVDDEQSLSELVSLALRYEGWEVRSAPDGLSAIAAARDFRPDLVVLDVMLPDIDGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV L+ + D++ GL +G DDY++KPF+ EELV R+RA++RRS Sbjct: 87 EVLRRLRADIERMPVLFLTAKDDVSDRIAGLTAGGDDYVTKPFSIEELVLRLRALLRRSH 146 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S IV GDL ++ D++ V I LT E++++ L ++K L+ Sbjct: 147 LALTTDSSTIVVGDLVLDEDSREVRRGDDLISLTATEFELLRFLMRNPKRVMSKAQILDR 206 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + I++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 207 VWNYDFGGQANIVELYISYLRKKI--DAGREPMIHTMRGFGYVLKP 250 >gi|254422112|ref|ZP_05035830.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189601|gb|EDX84565.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 118/222 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD LA S+ L +E + V V GE G + ++D ++D+ L + G Sbjct: 1 MRLLLIEDDIQLAESLSEALTAEQYIVDVVKDGEAGWSQMQTLDYDLTLMDVTLPYLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR PV +L+ + +DKVRGL +GAD Y+ KPF+ EL+A+IRA++RR Sbjct: 61 GLCQRLRSRGHQLPVLMLTARDTSQDKVRGLDAGADAYMVKPFDLSELLAQIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + L +N + + LT KE+ ++ELL L++ L L+ Sbjct: 121 IPAAIALAYEHLQLNPETYEASYAQQALRLTPKEFSILELLMRNGRRVLSRSFILESLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P+ + + I LR KL A K++IETV G GY L+ Sbjct: 181 LQSPPDEETVKAHIKSLRNKLRAAGAPKSFIETVHGVGYRLQ 222 >gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str. Erdman] Length = 234 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+ + + L E V G + ++DA++LD+ L I GFE Sbjct: 5 HILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR ++ TPV +L+ + D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 65 VCARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 125 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ + G +ET+ G GY LR++ Sbjct: 185 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 227 >gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 16-3] gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A I L L+++ + V+ GE+ + + + D +LD+ L DI GF Sbjct: 1 MNILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R K + PV +L+ DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 61 EILKRIR-EKYTFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119 Query: 121 GHAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD+ N + + LT E+ ++ LL + ++ E Sbjct: 120 QYNDGGKIEGDVIDFAGVLLNRTSHECIFNERSLTLTPIEFDILWLLCENRGKVISSEEL 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I LR+K+S G ++I+TVWG GY + E Sbjct: 180 FRKVWKEEYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 229 >gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 254 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 19/239 (7%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED+ +A ++ L++E + V G G+ELC+ D ++LD+ L G EV R Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122 + A PV +L+ DK+ GL GADDY++KPF+ ELVAR+ +VRR Sbjct: 82 RV-QAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 123 -----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + G+L ++ + V G +HLT E+ ++ L+ T LT+ Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 E L ++D D + +D + LR+KL + TV G GY E Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGGVQEAP 254 >gi|146279972|ref|YP_001170130.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC 17025] gi|145558213|gb|ABP72825.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC 17025] Length = 224 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL EDD A + L +E ++V G D + +D +++D + + G Sbjct: 1 MKILLAEDDSQTAAYLRQGLSAEGYSVDHVPDGRDALVQATLQPYDLLVIDRMMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR A++ P+ IL+ M + D+V GLQ+GADDY+ KPF EL AR+ A+ RR Sbjct: 61 SLVKALRSAQVKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPA 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S GDL+++ +T G I L +E++++E L T+ M L + Sbjct: 121 LAETSRDVLRVGDLTLDTTRRTATRGGAEIDLQPREFRLLEHLMRSAGRVQTRTMLLEAV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P +++ I +LR K+ + K + TV G GY+L+ Sbjct: 181 WDFHFDPGTSVVETHISRLRAKI-DRPFEKPLLHTVRGAGYMLK 223 >gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+D+K++ + I++ LK E + + V+ G +GIE K + D +ILD+ L DI G Sbjct: 1 MKILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEKPDLVILDIMLPDISGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ + PV +++ S I DK+ GLQ GADDYI+KPFN EL+ RI+AI +R Sbjct: 61 EVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKRIT 120 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + I G + V + + V V G +++T KE+ + L+ N T++ Sbjct: 121 KKDREEVHKNNEINLGAIKVLKNERKVLVDGKEVNMTYKEFNTLLLMIENHNKVFTRDEL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ E + +D+ I +LRKKLS + ++T++G GY L Sbjct: 181 LEKVWGYEYEGNSRAVDILIQRLRKKLSPYSQS---VKTIYGVGYKLE 225 >gi|251778829|ref|ZP_04821749.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083144|gb|EES49034.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + I++ L EN+ V + G D I L K D I+LDL L D GF Sbjct: 1 MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ + P+ ILS + +K+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 EVIHEFQGINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +I G + + + + V + + T E+++I L+ Sbjct: 121 KAKAIGKNEVKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+E L+ ++ + +D+ I ++R+KL G ++ I+T++G GY L Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRLE 230 >gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Blautia hansenii DSM 20583] gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Blautia hansenii DSM 20583] Length = 235 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 12/236 (5%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLT 55 M+ +L+I+DDK L ++ ++ EN + G +G+++ K + F IILD+ + Sbjct: 1 MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + GF+VL+ +R + PV +L+ S+ EDKV GL+ GADDY++KPF+ EL AR+ ++ Sbjct: 61 YMNGFQVLKKIR-EVSNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119 Query: 116 VRRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +RR I D++++ ++V V+G + LTGKE+ ++ L+ K Sbjct: 120 IRRYTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 TK+ +++ + I FI KLRKK+ Y+ TV G GY + A Sbjct: 180 TKKQIYTQVWEDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNKEA 235 >gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032] gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + ++ L + V GE ++ D +ILD+ + + G E Sbjct: 4 RILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVDD-SLDLVILDVMMPGLSGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R A + P+ L+ SS DK GL +G DDY++KPF++EEL AR+ A +RR Sbjct: 63 TCQQMR-ASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L V+ + V + +I L+ EY+M++LL R+N + + Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNIY 181 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I KLR K+ + YI+T WGRGY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPFYIKTEWGRGYRF 228 >gi|134279950|ref|ZP_01766662.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei 305] gi|134249150|gb|EBA49232.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei 305] Length = 273 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 EVLSRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249 >gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDDK + L+++N+ V G + I+ K ++D IILD+ + ++ G Sbjct: 5 RILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNLDGHT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + +R + P+ L+ +S D+++G + G DDYI+KPF+ L+ R+ A+ R Sbjct: 65 TCKMIR-NTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHN 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + D+S++L+ T++V+ + LT KE+ +++ L + +T+E L+ ++ Sbjct: 124 ENKNTSLNFEDISLDLNTYTLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+D I +RKK+ YI+TV G GY L + Sbjct: 184 YDYYGDSRIVDAHIKNIRKKIGL-----PYIKTVKGIGYTLEK 221 >gi|222082735|ref|YP_002542100.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Agrobacterium radiobacter K84] gi|221727414|gb|ACM30503.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Agrobacterium radiobacter K84] Length = 230 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V + D IILDLGL D PG + Sbjct: 7 KILVVDDEPPIRKLLRVGLSAQGYLVNEAPNAAAAKLSVEEDRPDLIILDLGLPDKPGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R + PV ILS + V+ L++GADDY++KPF EL ARIR R Sbjct: 67 LLQEWREDGLEIPVVILSSRTDEAGIVKALETGADDYVTKPFGVNELAARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G + L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSLDLVKRIVKVDGKEVKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + V++ +LR+K+ YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYVRQLRQKIEQIPDQPQYITTETGVGYRLREPE 230 >gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ ++A + L+ +F V + G+ G+E +FD IILD+ L + GFE Sbjct: 3 KVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R + Sbjct: 63 ICKQIR-EAKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRYQR 121 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + D+ ++ A+ V + G T KE+ ++ L+ N TKE Sbjct: 122 LVNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGYRFK 228 >gi|297154811|gb|ADI04523.1| CheY-like receiver domain-containing response regulator [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD L ++ L++E F V DG+ +D IILD+ + + G+ Sbjct: 1 MRVLVMDDDTRLVELLQQGLRAEGFAVDAASDSLDGLAKAAADNYDVIILDVMMPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR +TP+ +L+ D+ GL++GADDY++KPF+ L AR+ A++RR+R Sbjct: 61 KVCAHLRSIGDNTPILMLTAKDGEYDEAEGLETGADDYLTKPFSFVVLTARLHALIRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + GDL ++ + G I LT +E+ ++ LL+ + ++K L+ ++D Sbjct: 121 PERQVVQHFGDLEIDTGGRRCRRAGTDIALTPREFDVLALLTATPDIAISKAAILDRVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I++V + LR+K+ + G+ IETV G Y LR + Sbjct: 181 SAYEGGPNIVEVHVSALRRKI-DRPFGRASIETVPGGAYRLRSDG 224 >gi|295838626|ref|ZP_06825559.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74] gi|295827102|gb|EFG65240.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74] Length = 231 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A+ ++EL L + V GEDG+ + D I+LD+ L I GFEV Sbjct: 10 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 70 CRRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G+L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 129 SSDSAAFGNLVIDRSAMTVAKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLDAP 230 >gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590] Length = 219 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L EN+ V + + G+ G++ +D IILD+ L I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ I++ S DKV GL GADDYI KPF EEL ARIRAI+RR Sbjct: 64 CRRIRQQYTT-PIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRRQPQK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I + ++ +A V V G ++ LT EY ++ +L+ +N L +E L+H++ Sbjct: 123 DVIDING--IIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL + IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKP-FNKERTIETVRGVGYVIR 219 >gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas albilineans GPE PC73] gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas albilineans] Length = 229 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ +F + L D I+LD L G E Sbjct: 4 RILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWMLPGTSGLE 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R R ++ P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA++RR+ Sbjct: 64 LARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123 Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + G+L ++ A V + + EY+++ ++ L+H+ Sbjct: 124 REDDEDGSVSVGNLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYSRAQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + IDV I +LRK L +N ++TV G GY Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FAVENMVQTVRGSGYRF 225 >gi|282853701|ref|ZP_06263038.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583154|gb|EFB88534.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314923679|gb|EFS87510.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314967118|gb|EFT11217.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314983174|gb|EFT27266.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092396|gb|EFT64372.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315103851|gb|EFT75827.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327327251|gb|EGE69027.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1] Length = 236 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + + ++LDL L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 + +R P+ +L+ S D V+GL +GADDY+ KPF EL+ARIRA +R + Sbjct: 70 CQDIRRESGV-PIIMLTARSDTPDVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVAQ 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL+++ A V++ G I LT EY ++ ++ N ++E L ++ Sbjct: 129 REEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235 >gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01] gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 228 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIIL--DLGLTDIP 58 M+IL+++DDK + + + LK+E + G++ I D +++ D+ + ++ Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTT-TPDIVLMILDVMMPNMS 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RR Sbjct: 60 GIDVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118 Query: 119 SRGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ ++ G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 119 SQKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADE 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G++ I+TVWG GY + Sbjct: 179 IFERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227 >gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A+ I L F V V G DG + E+D IILD+ L + G+ Sbjct: 1 MRLLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + +TPV L+ +IED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QLLQLIR-QRGATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL +++ + V G RI LT KE+ ++ LL+ R+ L++ + + +++ Sbjct: 120 LREAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V + +LR K+ + I TV G GY L A D+ Sbjct: 180 LNFDSDTNMVEVAVRRLRSKV-DDPYMPKLIHTVRGVGYQLE--APDDA 225 >gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ + ++L L+ ENF V T G D I + FD IILD+ L +I GF Sbjct: 1 MRILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ +R+ + PV L+ ++ D++ GL+ GADDY++KPF EEL+ RI +++R+ Sbjct: 61 QICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKRTS 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G +N E + LT KE +++LL R+N ++++ L Sbjct: 121 KSPENTPEIFEFGSNRINFITFEAEGILGKFILTKKEAMLLKLLIDRRNEVVSRQQILQS 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ P + ID FI K R+ + + ++ G GY Sbjct: 181 VWGYDVYPSTRTIDNFILKFRRNFEGDSKNPRHFHSIRGVGYKF 224 >gi|156740251|ref|YP_001430380.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231579|gb|ABU56362.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 227 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD+ LA I +L+ E+ V V G+ G E ++ I+D L G Sbjct: 1 MKILLIEDDQRLARLIARVLRDEHHQVDVVHDGDAGQEHALRGIYEVAIIDWMLPGRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA+R A++ T + +L+ IEDK+ G SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SICRAVRAARLPTALLLLTARGQIEDKMVGFDSGADDYLVKPFAFEELLARVRALGRRFT 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GDL ++L T + LT E+ ++E L L+++ L+++ Sbjct: 121 LQPDDRDELRVGDLVLDLRHHTARRGARPLDLTPTEWNLLEYLMRNAGQALSRQQILDYV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +++DV+I LR+KL NA G ++ I TV G GY L E+ Sbjct: 181 WSYEHDVQPQMVDVYIAYLRRKL-NAPGERDPIVTVRGVGYRLEES 225 >gi|110635897|ref|YP_676105.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286881|gb|ABG64940.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 233 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G +E ILD+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLSSRPPSLAILDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LR LR K PV L+ D++ GL+ GADD++ KPF++ LV R+RA++RR+ Sbjct: 64 LRRLR-QKTDLPVIFLTSKDDEIDELFGLKMGADDFVRKPFSQRLLVERVRAVLRRASAR 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L ++ + T + + LT E+ ++ L+ R +++ Sbjct: 123 ENGAKAPDKQSRSLERGHLVMDQERHTCTWKDEPVTLTVTEFLILHALAQRPGVVKSRDA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK G + IET++G GY RE Sbjct: 183 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDGEFDMIETLYGVGYRFRE 232 >gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLEAWRRNHRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLL 216 >gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V + L + D I+LD L G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + + PV +L+ S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L ++ + + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G ++ETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRF 225 >gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + L+L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +++ ++ PV +++ ED+VRGL GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 LIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLRRV 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ +I L ++ + V QG + + E++++ ++E LN++ Sbjct: 124 SPMSAEDIINMDGLILDSSSHRVSSQGQNVEMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VGGHDRMVQTVRGTGYRF 225 >gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+ +D++ + + ++L+SE +NV GED + D IILD+ + G Sbjct: 1 MKNILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAVIKVDKN-IDLIILDIMMPIKSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F+ +R K S P+ L+ + DK G SG DDY+SKPF+ ELV+R++A++RR Sbjct: 60 FKACVEIR-EKTSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLRRY 118 Query: 120 RGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I L++N+ + V + I LT EY+++ L++ + + + Sbjct: 119 YVYKGKEKVNSNEDINIDGLTINISSNEVFIDNKEIILTETEYRILLLMAQNRKKVFSAQ 178 Query: 173 MFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I V I LR+KL YI+TVWG+GY + Sbjct: 179 NLYESVWKEPYFYSCNNTIMVHIRNLRRKLEREPQNPKYIKTVWGKGYRIE 229 >gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50] gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+K + ++++ LK+ +N+Y G++ +E K ++ +++D+ + ++ G Sbjct: 4 ILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQIKEHDIHLVLMDIMMPEMDGITA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R PV +L+ S DK+ GL+ GADDYI+KPFN E++AR+++ +RR Sbjct: 64 MLKIREETNL-PVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRRYMQL 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + IV G + +N ++K V V G + LT EY ++ LL + Sbjct: 123 GSGQIKKDAIVIGGIELNDNSKQVTVDGKLVSLTPTEYDILRLLMEHPGQVFSPRDIYKE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + V I LR+K+ G YI+ +WGRGY + Sbjct: 183 VWKETPLGAEGSVAVHIRHLREKIEINPGEPRYIKVIWGRGYKME 227 >gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 252 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ AL+ + L++E F V + G++ D ++LD L + G E Sbjct: 25 RILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLE 84 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R +R + + P+ +L+ +K+RGL +GADDYI KPF+ EL+AR+RA+ R Sbjct: 85 ICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRS 144 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+ GDLS++ + V +HL E+++++ L R ++ L+ + Sbjct: 145 RPDRITGLLTAGDLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDGV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + +DV + +LRK LS ++ I TV G GY E+ Sbjct: 205 WGEAAEIDERTVDVHVGRLRKALSI-GEEQDPIRTVRGAGYSFDEH 249 >gi|220925326|ref|YP_002500628.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949933|gb|ACL60325.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 228 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + G DG L + ++D +++D L + G Sbjct: 1 MRLLIIEDDREAASYLSKAFREAGHVADLAADGLDGYALAREGDYDVLVVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR--AIVRR 118 ++R+LR + TPV ILS + ++D+V+GL++G DDY+ KP+ EL+ARI A R Sbjct: 61 SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARIEVLARRRG 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL ++ + V G I L +E++++E L +T+ M L H+ Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D +P+ +IDV + +LR K+ I TV G GY++R + Sbjct: 181 WDYHFDPQTNVIDVHVSRLRAKVDKGFERP-MIHTVRGAGYMVRAGGE 227 >gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 690 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L + ++ + G + + + I+LD+ L G ++ Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 532 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ +++ D++ GL GADDYI KPF+ E+VAR++AI+RR+ Sbjct: 533 CRELR-SFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 591 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ G + LT E +++ + +++ L+ LY Sbjct: 592 DPHTPKV--LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 649 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL A G++ I++++G GY L Sbjct: 650 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689 >gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 230 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +A ++ L++E + V + G +G+EL + E +ILD+ L + G ++ Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVMLPGMTGLDL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++LR PV +L+ +SSIEDKV GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 66 CQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGREQ 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L+ G I LT KE +ELL ++E L++++ Sbjct: 126 RPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRE 223 ++P ++DV++ +LR K+ G ++TV G GY L + Sbjct: 186 MHEDPLTNVVDVYVRRLRSKI--DEGHPLALLKTVRGLGYRLDD 227 >gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda FL6-60] Length = 229 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + +L+ + + + + D I+LD L G Sbjct: 3 IRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGI 62 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++++ L+ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 63 QLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + LS++ + V Q + + E++++ ++E LNH Sbjct: 123 ISPMALEETINLQGLSLDPVSHRVTAQDDAVEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I +LRK L +G ++TV G GY Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALE-GSGHDRMVQTVRGTGYRF 225 >gi|30021338|ref|NP_832969.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|118478527|ref|YP_895678.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042921|ref|ZP_03110160.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206968886|ref|ZP_03229841.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218233754|ref|YP_002367955.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921982|ref|ZP_04085293.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228953540|ref|ZP_04115583.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229070715|ref|ZP_04203945.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229080448|ref|ZP_04212969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229097707|ref|ZP_04228662.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229103767|ref|ZP_04234447.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|229116716|ref|ZP_04246100.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|229128513|ref|ZP_04257491.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229145816|ref|ZP_04274196.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229151413|ref|ZP_04279616.1| DNA-binding response regulator [Bacillus cereus m1550] gi|229179503|ref|ZP_04306856.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229185458|ref|ZP_04312640.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|296503743|ref|YP_003665443.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29896892|gb|AAP10170.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|118417752|gb|ABK86171.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026405|gb|EDX65073.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206735927|gb|EDZ53085.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218161711|gb|ACK61703.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228598046|gb|EEK55684.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228604004|gb|EEK61472.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228631956|gb|EEK88582.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228637647|gb|EEK94097.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228654706|gb|EEL10566.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228666548|gb|EEL22006.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228679643|gb|EEL33840.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228685652|gb|EEL39575.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228702750|gb|EEL55215.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228712385|gb|EEL64330.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228806124|gb|EEM52700.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837590|gb|EEM82920.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296324795|gb|ADH07723.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] Length = 226 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E F+ GE+G++ FDAIILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I ++ V+ + V + G+ + LT E+ ++E+L +KE + Sbjct: 124 PAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLF 224 >gi|291009674|ref|ZP_06567647.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F V G + + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 64 VCKAIRTE-SVVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL++++ V G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 EPAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVQ--RLRSKVERDPERPEVVLTVRGVGYK 219 >gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ + +EL L++E F V GE + +E I+LD+ + + G Sbjct: 7 IRVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMPGMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R L+ V +L+ I+D+V GL +GADDY++KPF+ EEL+ARI+A +R Sbjct: 67 AVCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G +++ K + G + L+ EY++++LL + + L+K LN ++D Sbjct: 127 PSLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL + I T+ G GY Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGD--KEHRVIRTLRGAGYR 224 >gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702] gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702] Length = 222 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA + L++EN+ V V GE + L + Y I+LD+ L I GF V Sbjct: 4 ILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIMLPGIDGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ I+S EDK+ GL GADDYI KP++ + ++A+I I +R Sbjct: 64 CRKIREESDT-PILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKRRYAV 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + GD+ VN ++TV I +T KE++++ LL K LTKE N ++ Sbjct: 123 DELID--GDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWGSD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + V I +LR+K+ + +I+TVWG GY Sbjct: 181 SFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKYE 220 >gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ] gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ] Length = 219 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD AL I LK E + V G + FD +LDLGL + G Sbjct: 1 MRILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR A PV +L+ + +++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + + ++ ++ V QG I L KE+ ++ L + LT++ LY Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +E E ++V + LR+K I TV G GY+ Sbjct: 181 WSEEVESNALEVHVHHLRRKF-----FPELIRTVRGVGYM 215 >gi|291534308|emb|CBL07420.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538051|emb|CBL11162.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 235 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + IE+ LKS+N+NVY G +G+E+ + E I+D+ + + G + Sbjct: 6 ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGIEGLEIIESKEIHLAIVDIMMPRMDGVTM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR PV +LS S DKV GL GADDY++KPF EL+AR+ + +RR Sbjct: 66 TLKLR-EHHDFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQIRRYTKF 124 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G + +N D V V G + +T E++++ LL + + Sbjct: 125 NNKSQEKKENDRVHIIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSADE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ I V + +R K+ Y++ VWG GY + + Sbjct: 185 IYERVWN-EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKMEKQ 234 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+++LA ++ L+ E + V G + + L EFD IILDL L + G+E Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ ++ +D+++GL++GADDY++KPF+ +EL+ R++ +++R + Sbjct: 68 VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQW 127 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G+ +VN + + LT +E +++ L + ++++ L Sbjct: 128 YQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELLE 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + + +D FI +LRK +I +V GY Sbjct: 188 NVWQVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGYQF 232 >gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADLIRTVRGAGYSF 227 >gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 235 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 125/236 (52%), Gaps = 18/236 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC----------KFYEFDAIIL 50 MR+LL+EDD + S++L L+ E F V GE G+ + +D I+L Sbjct: 1 MRVLLVEDDAMIGDSVKLALRQEGFAVDWVQDGEAGLAAGTPTGGSGGADEGACYDLILL 60 Query: 51 DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 DLGL G +VLRALR +STPV IL+ +I D+V GL +GADDY+ KPF+ +EL A Sbjct: 61 DLGLPRRSGLDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAA 120 Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R+ A+ RR+ G A+ ++ G +S+N + V + G +HL+ +E+ ++ L R + Sbjct: 121 RMHALARRAEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRE 223 LY DE ++V+I LRKK A I + G GY L E Sbjct: 181 VAQLQERLYSWDDEVGSNTVEVYIHALRKKFGAA-----LIRNIRGVGYVMPRLEE 231 >gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 246 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ I +L + +ILD+ + ++ G Sbjct: 19 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 78 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 79 MDVVKEVRKDSQI-PIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 137 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L++ D+ V G +I LT E+ ++ LL+ N + + Sbjct: 138 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 197 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ IETVWG GY + Sbjct: 198 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245 >gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium] gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDRMVQTVRGTGYRF 225 >gi|157825231|ref|YP_001492951.1| transcriptional activator protein CzcR [Rickettsia akari str. Hartford] gi|157799189|gb|ABV74443.1| Transcriptional activator protein CzcR [Rickettsia akari str. Hartford] Length = 237 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 132/223 (59%), Positives = 171/223 (76%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ + K +D +ILD+ L DI GF Sbjct: 1 MRVLLIEDELEMANLIELTLASEGIVCDKASVGVEGLRIGKVCGYDLVILDIMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ + +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVVKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V V+G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227 >gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3047] gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116] gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3047] gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116] Length = 220 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L + F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+ LQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + G + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 121 YHHSVIEQAG-VKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL K +I T+ G GY L Sbjct: 180 WDEEISSGALDVHIYNLRQKLG-----KQFIRTIHGVGYAL 215 >gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+K + ++ L+ E + V G++ + K D I+LD+ + + GF + Sbjct: 5 ILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN-PDLIVLDVMMPGMDGFAL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R IS P+ LS + +D+V+GL G DDY+ KPF+ +EL ARI A +RR + Sbjct: 64 CELIR-KSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQRI 122 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+L+++L+ + I T +E++++ L+L T+E ++ Sbjct: 123 NSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEKVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + I + K+R KL YI TVWG GY + Sbjct: 183 GYDAEGDSSTITEHVKKIRAKLLKYDETP-YISTVWGIGYKWVK 225 >gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + ++ L + V GE ++ D +ILD+ + I G E Sbjct: 4 RILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVDD-SLDLVILDVMMPGISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R A + P+ L+ SS DK GL +G DDY++KPF++EEL AR+ A +RR Sbjct: 63 TCQQMR-ASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L V+ + V ++ L+ EY+M++LL R+N + + Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNIY 181 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I KLR K+ + YI+T WGRGY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPVYIKTEWGRGYRF 228 >gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 240 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 16/237 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+A+ +++E L E + V G + + D ++LD+ + I G +V Sbjct: 5 VLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVMMPGIDGLQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR TPV +L+ + D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ Sbjct: 65 CRVLRAEGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPV 124 Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + + ++ A+ + LT E++++ELL Sbjct: 125 AAGSAPAAEEAPKAAPGRFLEAAGIRMDPQARRAWRGERELELTRTEFELLELLVRNAGI 184 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L + ++ P K + V++ LR+KL + G I TV G GYVLRE+ Sbjct: 185 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPLLIHTVRGVGYVLRED 240 >gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 219 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F+V G+ G +DA++LDL L +I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCSAPYDAVVLDLTLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LRA R + S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 61 AILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S + G ++++ + ++G + L KE+ ++ELL L ++ LY Sbjct: 121 GQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPRKAIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 218 >gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ +A + L+ F G +E K D I+LD+ L G E Sbjct: 7 HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R A + P+ +++ D++ GL+ GADDYI KPF+ E+VARI+A+ RR + Sbjct: 67 VCKEIR-AFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQ 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + + + R+ LT EY++++LL ++ L+ Y Sbjct: 126 IGVPEPTRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222 ++ID I LRKK+S A G+ I V+G GY Sbjct: 186 EQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFE 227 >gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium 6_1_63FAA] Length = 237 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 115/233 (49%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDDK + + + LKS+++ V++ G +G+E+ + E I+D+ + + G Sbjct: 5 HILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEEIHLAIVDIMMPRMDGIT 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR K PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 65 MTIKLR-EKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRRYRK 123 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++ G L VN + V V + +T E++++ LL + Sbjct: 124 FMEKLQAKESERTDTIYTIGGLEVNENTFEVRVDDTPVKMTPMEFKILLLLIKNPGRVFS 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ R + + V + +R+K+ Y++ VWG GY + + Sbjct: 184 ADEIYERVWNERA-INTETVMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 235 >gi|188588682|ref|YP_001919802.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188498963|gb|ACD52099.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + I++ L EN+ V + G D I L K D I+LDL L D GF Sbjct: 1 MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ + P+ ILS + +K+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 EVIHEFQSINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +I G + + + + V + + T E+++I L+ Sbjct: 121 KAKAIGKNEIKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+E L+ ++ + +D+ I ++R+KL G ++ I+T++G GY L Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRLE 230 >gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 227 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +L + D + + D I+LD G + Sbjct: 4 RILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGSGIK 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L L+ S PV +L+ +DKVRGL++GADDY++KPF+ +EL+AR++ ++RR Sbjct: 64 LLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRRV 123 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++ + V + +++ E+ ++ ++E LN++ Sbjct: 124 NPTSLDDELSFNKLKLDPVSHRVSLADEALNMGPTEFNLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L++ + I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALAD---HDHLIQTVRGAGYRF 223 >gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437] Length = 245 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+++ + L++ENF V + + +ILD+ + + GFE+ Sbjct: 23 VLVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIMMPEQNGFEL 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R AK + P+ LS S DK+RGL G DDYI K + E+VAR++A++RR Sbjct: 83 CRRIR-AKSNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASQ 141 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++ G + +NL + V V+ ++ LT KEY+++ L + + E L + Sbjct: 142 QQMEERILDYGRIKINLSTREVLVEEKKVVLTPKEYELLRLFAEHPRHVFSYEQLLAKFW 201 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DG + I V + +LR+K+ + Y+ VWG GY Sbjct: 202 DG--VGDKHTIRVHLSRLREKIESDPNHPQYLVNVWGVGYRFE 242 >gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ E + + + G++ I ++D I+LDL + G E Sbjct: 8 KILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQIR-EKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYFNANTTTKDVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 L ++ +++ +D + +LR+KL+ G I TVWG GY A+ Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEVGAE 240 >gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 236 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 15/234 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + +I++ LK++ ++V++ + G++G+E+ ++D+ + + G + Sbjct: 5 ILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ LS S DK+ GL GADDYI+KPF EL+AR+R+ +RR Sbjct: 65 TMEIR-KKYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQI 123 Query: 123 -------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + + L++N K V V + L KE+ ++ELL Sbjct: 124 LLLKEHASSTLKSEEEIYCIDALTLNSTTKEVLVDDVPVKLRPKEFMILELLMKHPGRVF 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ + + V I KLR+K+ Y++ VWG GY + + Sbjct: 184 SAQQIYEAVWNEEA-INTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236 >gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 245 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 7/237 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD +A + + L+ + V + G G L D I+LDL L + GF Sbjct: 4 RILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVDGFT 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR PV +L+ + +DKV G SGADDY++KPF EE++AR+RA++RR+ Sbjct: 64 VCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALLRRT 123 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 124 DRIPQAAKHAEILSYGPLTLVPERFEAIWYAQIVKLTHLEFELLHCLLQRHGQTVSPSEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++ + +++ I V I LR K+ +I+TV+G GY L + E Sbjct: 184 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRFIKTVYGAGYCLELPSNGSKSE 240 >gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22] gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22] Length = 239 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 5/235 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++DD +A + L + V G + + D ++LDL L + G EV Sbjct: 2 LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLMLPGMDGLEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGH 122 R LR PV +L+ +D++ GL+ GADDY++KPF+ ELV R+ ++ R Sbjct: 62 RRLRAR-GPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPAS 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + L ++ A+ G + LT +E+ ++ ++E + ++ Sbjct: 121 DARQLTAAGLRLDPAARHATRDGAELALTLREFDLLAFFLRNPGRAHSREDLMREVWGWD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCEYLET 235 ++ + V + +LR K+ + I TVWG GY + D+ E+ Sbjct: 181 F-GDLSTVTVHVRRLRGKIEHDPAQPRLIRTVWGVGYRFESADTTADDDAEHAPA 234 >gi|126699391|ref|YP_001088288.1| two-component response regulator [Clostridium difficile 630] gi|115250828|emb|CAJ68652.1| Two-component response regulator [Clostridium difficile] Length = 244 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + +LD+ L DI G Sbjct: 16 KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDISGI 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + +DK+ G SGADDYI KPF+ +EL+ R+ A++RR Sbjct: 76 EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135 Query: 121 GHAQSLIVTGDLSV----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + +S ++D + + G I LT E+ +++ L +L+++ L+ Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKEE 244 >gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 224 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR +ST V +++ +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC 43380] gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC 43380] Length = 241 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L + L++ + G + I+ + I+LDL L + G + Sbjct: 16 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTKGTEVIDAVRQAPPSIILLDLMLPGLDGISI 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 76 CREIR-RFSNVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + T L ++ QGH + LT E++++++L+ + ++E LN+LYD Sbjct: 135 PEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K +I V+G GY Sbjct: 195 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWEAE 236 >gi|168204365|ref|ZP_02630370.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170664057|gb|EDT16740.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 234 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L VN D K V + G + +T E+++++LL + E Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++G + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNGNA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ NF V V + G+ G++ +FD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQIRDQKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|255281374|ref|ZP_05345929.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267862|gb|EET61067.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 237 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ ++ E L++ F+ + G + L FD I+LDL L G++ Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R ++ P+ +++ + DK+RGL GADDYI+KPF+ ELVAR+ A +R+ Sbjct: 66 ICREIR-EQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDR 124 Query: 122 HAQSLIVTGDLSVNLDA----------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + V I +E+++++ L++ N ++ Sbjct: 125 MMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E ++ + + V I ++R+K+ + + +ETVWG GY ++ Sbjct: 185 EQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >gi|169629014|ref|YP_001702663.1| putative transcriptional regulatory protein PrrA [Mycobacterium abscessus ATCC 19977] gi|169240981|emb|CAM62009.1| Putative transcriptional regulatory protein PrrA [Mycobacterium abscessus] Length = 236 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + +S+ L+ F+V V G D + E DA++LD+ + ++ G Sbjct: 10 KVLMVDDDPDVRNSVARGLRHSGFDVRVAVDGRDALTQLAADEPDALVLDVQMPELDGVA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+RA++RR Sbjct: 70 VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLRALLRRRGA 129 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S I G ++V++ + V V G R+ L+ +E+ ++ +L+ L++ L Sbjct: 130 GSGGLADSAITVGQITVDVSRRLVFVNGERVELSKREFDLLVVLAENTGVVLSRTRLLEL 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + E + DVF+ LR+KL A G I TV G GYV+RE Sbjct: 190 VWGYDFDVETNVADVFVSYLRRKLE-AGGAARVIHTVRGVGYVMREE 235 >gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] Length = 226 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD +A + L+ +F V D G+ G+ + E+D +I+D L + G Sbjct: 1 MKALVIEDDHDVASYLVKGLRESDFVVDHADDGKKGMLMAASEEYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R P+ ILS + ++D+V GL+ G DDY++KPF+ EL+ARI +++RR+R Sbjct: 61 AIIKTVRATGNQVPILILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ DL ++L A+TV+ G I + +E++++E L +T+ M L + Sbjct: 121 QAAETETVLHVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ ++TV G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFDTP-LLQTVRGAGYMLRETA 226 >gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + L+ E V G + +E + D ++LD+ + + GFE Sbjct: 9 VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + PV IL+ ED+VRGL+ GADDY+ KPF++ ELV+RIRA++RR Sbjct: 69 LRRIR-SFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRHYTQ 127 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LS++ + V V G R++L EY+++ L LT EM L+ + Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ++I LR+K+ YI T G GY + Sbjct: 188 WGPEYRDESHYLRLYITYLRQKIEEDPSNPKYILTERGVGYRFVD 232 >gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1] gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1] Length = 239 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + + + + LT E+ +++ L L+++ Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ YI+TVWG GYV + Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMGEEDPAHPRYIQTVWGLGYVFVPDG 236 >gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ + +L F + G+ D ++LD L G ++ Sbjct: 5 ILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGSGIQL 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +ALR + P+ +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A+ R + Sbjct: 65 AKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRRSA 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L ++ + V V+ + + E++++ ++E L++++ Sbjct: 125 PTRLEEAVEVQGLRLDPVSHRVTVEEQGLDMGPTEFRLLHFFMTHPERVYSREQLLDNVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK + G I+TV G GY Sbjct: 185 GTNVYVEDRTVDVHIRRLRKAIQE-TGHDKLIQTVRGAGYRF 225 >gi|300361402|ref|ZP_07057579.1| response regulator [Lactobacillus gasseri JV-V03] gi|300354021|gb|EFJ69892.1| response regulator [Lactobacillus gasseri JV-V03] Length = 236 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++EDD ++A +++ E + V + G + +E+ K + +D + LDL L G Sbjct: 3 KILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGVEAVEMFKAHPDSYDIVTLDLNLPKKDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ RRS Sbjct: 63 MEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122 Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170 G L ++ D + V + + LT KE+ ++ ++ + + Sbjct: 123 HIEKDMHASNGLKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +D I KLR+KL A G ++TVWG GY ++ Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDSE 235 >gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I+ G + +++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIICGPVRLDIKSSKATVNGTALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKK+ IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219 >gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB [Saccharophagus degradans 2-40] Length = 234 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + + L+ + V + L + D I+LD L G E+ Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ +++ P+ +L+ ++KV+GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I L ++ + V + + + EY+++E + T+ L+H++ Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK LS G +I+TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALSLE-GHDRFIQTVRGAGYRF 226 >gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-272] gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-227] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] Length = 219 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+IED+K ++ ++L L + GE G++ E++ I+LDL L I Sbjct: 1 MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV R LR TPV +L+ + DKV GLQ GADDY++KPF EEL+ARI A++RR Sbjct: 61 GIEVCRRLR-EIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 119 Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G++ ++ V + + ++LT E+ ++ LL +++ L+ Sbjct: 120 MNFQKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ +++V+I LR K+ G K IETV G GY L Sbjct: 180 VWGYDEDVSTNVVEVYIRYLRNKI---PGIK--IETVRGVGYRL 218 >gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA + L+ E++ V GE + E+D +ILDL L + GF Sbjct: 1 MRILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R P+ +L+G + +ED+VR L GADD + KPF+ EL AR+RA++RR Sbjct: 61 GVLQQVR-DHKRCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ + DL ++ +TV G RI LT KE+ ++E L +T+ M + H+++ Sbjct: 120 SAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRTMIIEHVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + ++DV++ LR+K+ ++ I TV G GY +R + + Sbjct: 180 LKFDTGTNVVDVYVNYLRRKV-DSEFPTKLIGTVRGVGYEIRPEGVEAS 227 >gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. MG1655] gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. W3110] gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. DH10B] gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BW2952] gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655] gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. MG1655] gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K12 substr. W3110] gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. DH10B] gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BW2952] gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1] Length = 219 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L++++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V VT+ G+DG+ L +FD I+LD+ L + GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPALDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|299822697|ref|ZP_07054583.1| two component response regulator [Listeria grayi DSM 20601] gi|299816226|gb|EFI83464.1| two component response regulator [Listeria grayi DSM 20601] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+K L+ ++ +L+ E ++ + +G + + D ++LD+ L D G+ Sbjct: 3 KILIVDDEKELSLLLKRILEKEGLSDISIAQNLAEGYTKFEAEKPDLVLLDIMLPDGEGY 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ +S DK+ GL G DDYI+KPF+ +E+ R++A +RR+ Sbjct: 63 DLCKKIR-ETSIVPILFMSAKGEEIDKLLGLAIGGDDYITKPFSPKEVAYRVKAHLRRAN 121 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G N + + G + LT KE ++ + N ++KE + Sbjct: 122 FTVPQQKALQVGPFQFNDNETELRKAGEPLELTAKEIALMRVFMHNPNQIISKETLFERV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V I +LR+K+ Y+ TV G GY Sbjct: 182 WQETFLGADNTLMVHIRRLREKIEAQPSKPEYLITVKGLGYKF 224 >gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis Et1/99] gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis Et1/99] Length = 235 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L++ N++ + G++ ++ K + D ++LDL L + G V Sbjct: 10 ILIVEDEPKLGQLMIDYLQAANYHTHHLLRGDEVVDWVKLHAPDLVLLDLMLPGMDGLSV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV +++ D++ GL+ GADDYI KPF+ E+VAR++AI++R + Sbjct: 70 CRELR-SFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKAILKRCQRG 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +Q + L V+ + LT E+++++ LS + ++E LNHLYD Sbjct: 129 SQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSREQLLNHLYDDY 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ID I LR+KL + +I V+G GY ++ Sbjct: 189 RVVTDRTIDSHIKNLRRKLEALDAEQPFIRAVYGIGYRWESDS 231 >gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 240 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 16/243 (6%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L++ED+ A+A I + L+ F D I+LD L Sbjct: 1 MRQQPGVLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWMLPG 60 Query: 57 IPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 G + + R + P+ +L+ D+V GL +GADDYI+KPF+ +EL+AR+RA Sbjct: 61 ESGLALAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRA 120 Query: 115 I-VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + RR+ ++ G LS++ V G + L E+++++ L ++ Sbjct: 121 VLRRRAPEQVGGVVSVGALSLDTATYRVTFAGQPLKLGPTEFKLLQYLMSHAERVHSRGQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 L+ ++ E + +DV + +LR+ L AG +ETV G GY L T + + Sbjct: 181 LLDKVWGDHVFIEERTVDVHVKRLREALGAQAG--QMVETVRGAGYRL-------TAQSI 231 Query: 234 ETA 236 + A Sbjct: 232 QAA 234 >gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 224 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR +ST V +L+ +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLR-KTVSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] Length = 227 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + + G DG+ L E+ +ILD+ L + G+ Sbjct: 1 MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I R Sbjct: 61 QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL ++L + V G R+ LT KE+ ++ELL R L + + + ++ Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +I+V + +LR K+ + I+TV G GYVL ++ Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKI-DEGHSIKLIQTVRGMGYVLDVPEEE 227 >gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 220 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD +A + L++ + V GE + + + E D I+LD+GL + GF Sbjct: 3 RILIAEDDVQIASFVGKGLRAAGYTVEHVADGETALLMGRSPEIDMILLDIGLPAMDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR +STPV +L+ S+ D V GL+ GA+DY++KPF EL+AR+R + Sbjct: 63 VLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDAP 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S TGDL ++L ++ V+V I LT +E+ ++E+ + L++E L H++ Sbjct: 123 AAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P ++DV++ LR K+ +ETV G GY LR Sbjct: 183 GYDFDPASNVVDVYVRALRTKIGA-----QRLETVRGMGYRLR 220 >gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] Length = 237 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + + L++E ++V + G D L EFD +LD+ L D+ GFE Sbjct: 5 RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R + PV +L+ S DK+ GL GADDY+ KPF ELVAR +A +RR Sbjct: 65 LLRTIRTE-RTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123 Query: 122 HAQSLIV-----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + LS+N DA+TV V + T EY ++ L+ + + Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++D + V I LR+KL + A +I+ +WG GY + + Sbjct: 184 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 237 >gi|194015253|ref|ZP_03053869.1| response regulator [Bacillus pumilus ATCC 7061] gi|194012657|gb|EDW22223.1| response regulator [Bacillus pumilus ATCC 7061] Length = 240 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+ +D+KA+ +E +LK E F ++Y ++ +++ K + ++LD+ + GF Sbjct: 5 KILIADDEKAIVKMVERVLKKEGFKHIYKAYHADEALDIVKNEDIHLLLLDVMMPGKSGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---- 116 +VL +R P+ L+ +S DK+ G GADDYI+KPFN ELVARI+A + Sbjct: 65 DVLPEMR-KYTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTY 123 Query: 117 ---RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + AQS S + + ++V+G + + +++ N L+K+ Sbjct: 124 ISLKEDHDEAQSQYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I KLR+K+ YI T+ G GY + Sbjct: 184 IYEKVWGVPSYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKFIPH 234 >gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Angola] gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis Angola] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 5 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 64 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 65 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 125 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 185 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 226 >gi|152965772|ref|YP_001361556.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151360289|gb|ABS03292.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA ++ L +E V + G G + + +D ++LDL L G+ Sbjct: 1 MRVLLVEDEVLLADTVRRGLAAEGVEVDLAHDGPTGYRRAREHAYDVLVLDLMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A + TPV +L+ D+V GADDY++KPF+ L+AR+RA+ RR Sbjct: 61 EVCRDLRAAGVWTPVLVLTAKDGEYDQVDAFDLGADDYLTKPFSFPVLLARLRALHRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ + V + LT +E+ ++E L R++ + K L ++D Sbjct: 121 PERPVVLRAGDLVLDPATRRVHRGETPLTLTAREFALLEFLLRRRDEVVPKAEILRAVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++V++ LR+K+ +A ++ ++TV G GY L + Sbjct: 181 PEVSTDPNVVEVYVGYLRRKV-DAPFARHALQTVRGAGYRLAADG 224 >gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] Length = 236 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL +DD + + ++L+ E F V G++ +E D IILD+ + G Sbjct: 9 RILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVMMPGKSGI- 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + K++ P+ L+ + DK G +G DDY++KPF+ ELVAR++A++RR Sbjct: 67 LACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126 Query: 122 HAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + D N D++ V ++G I LT EY+++ LL+ + T + Sbjct: 127 YQGGGNRKEDDVQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186 Query: 174 FLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I LRKKL YI VWG+GY + Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236 >gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131] gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G++ EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR+ A +RR + Sbjct: 63 VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I+ G L+++L+++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + + I K+R K + N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225 >gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI R Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 246 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 14/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA +I L +E + V G ++ D II+DL L + G E Sbjct: 21 ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + A+ PV +L+ D V GL GADDY+SKPF+ ELVAR+RA++RR Sbjct: 81 TK-RIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDRA 139 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L ++ + V + G +HLT E+ ++ L+ + ++ LT+E Sbjct: 140 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 199 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D + LR KL + I TV G GY Sbjct: 200 LEEVWDWVDASSTRTVDSHVKALRHKLGAST-----IRTVHGVGYAFEPPE 245 >gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L++E F V + G++ + + + D I+LD L + G EV Sbjct: 7 VLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIEV 66 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA +RR R Sbjct: 67 CRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRVR 126 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 D+ ++ ++ V + L E++++ + ++E L+ ++ Sbjct: 127 PATVGQQLRYDDILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L G + + TV G GY L Sbjct: 187 GRDIYVDTRTVDVHIGRLRKALCQHGGT-DPVRTVRGAGYAL 227 >gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD A + L V G++G+ + +D +++D L + G Sbjct: 17 RILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRMLPKLDGLT 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 +LR LR A I TP L+ M SI+D+V+GL+SG DDY+ KPF EL ARI + R Sbjct: 77 LLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPPL 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q++ DL ++L +TV G + L E++++E L +T+ M L H+++ Sbjct: 137 QDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVWN 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ I++ I +LR KL + I TV G GY + Sbjct: 197 FHFDPKTNIVETHISRLRAKL-DRGFTPELIHTVRGVGYKI 236 >gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator [Geobacter metallireducens GS-15] gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K A ++ F+ GEDG+ L + +D +ILD+ L G+ Sbjct: 1 MRILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV LS +++D+VRGL+ GADDY+ KPF EL+AR R I+RR Sbjct: 61 SVLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L G + LT KE+ ++ LL RK L++ + + ++ Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+DV I +LR+K+ + + I TV G GYVL Sbjct: 181 INFDSDTNIVDVAIRRLRRKV-DDPFERKLISTVRGAGYVL 220 >gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + H I + L++ F+ G++ +E + D I+LD+ + GF V Sbjct: 9 ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGFSV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R PV LS DKV+GLQ G DDYI KPF+ EL ARI A++RRS Sbjct: 69 CERVRAQYEV-PVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSGSI 127 Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G ++++ A++V+V+G I LT KEY+++ ++ L++E L ++ Sbjct: 128 SGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQIW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +D I LR KL G +YI+TVWG GY Sbjct: 188 GMDYLGSLRTVDTHIKTLRMKL----GAGDYIKTVWGIGYKFE 226 >gi|283851240|ref|ZP_06368523.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283573409|gb|EFC21386.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 225 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD A + LK + V G + + +DA+++D L + G Sbjct: 1 MRVLIVEDDLEAAAYMVKGLKESGYVVDHVADGREALYRVAAEAYDAVVVDRMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R A PV ILS + ++D+V+GL++G DDY+ KP+ EL+AR+ A++RR R Sbjct: 61 TIVRTMRSAGNLAPVLILSALGDVDDRVKGLKAGGDDYLVKPYAFAELLARLEALLRRGR 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DL ++L +TV G I L KE+ ++E L +T+ M L +++ Sbjct: 121 ADAPDTTLKLADLEMDLVGRTVRRGGKPIELKPKEFALLEYLMRHAGHVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV I +LR+K+ + K + T+ G GY LR++ Sbjct: 181 DYSFDPQTNVIDVHISRLRQKI-DKGQDKPLLSTIRGAGYSLRDS 224 >gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDDK +A+SI L L++E F+V G + IE+ K D II+DL + + G E Sbjct: 5 KILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR P+ ILS S DKV GL GADDYI+KPFN EL+AR+ + +RR Sbjct: 65 AIKKLR-DISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I G++ +N KT V I+LT EY+++E L N + E H Sbjct: 124 YDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ E K + V I ++R+K+ YI+ WG GY +N + Sbjct: 184 VWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231 >gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 245 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A I + L+ ++ + + E + D +ILD L G Sbjct: 3 RILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWMLPGESGVS 62 Query: 62 VLRALRVAKISTP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R + + +L+ SS +D V+GL +GADDY+SKPF+ EL+ARIRA+ R+ Sbjct: 63 LARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLRRK 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G L ++ A V Q + L E++++ L ++ L+ + Sbjct: 123 LPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRGQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LR L+ G IETV G GY L Sbjct: 183 WGDHVFIEERTVDVHIKRLRGVLAPY-GCAELIETVRGAGYRL 224 >gi|149908364|ref|ZP_01897027.1| DNA-binding response regulator BaeS [Moritella sp. PE36] gi|149808527|gb|EDM68462.1| DNA-binding response regulator BaeS [Moritella sp. PE36] Length = 226 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 2/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +LA + L F ++ D G + I+ K D +ILDL L + G ++ Sbjct: 8 ILVVEDEPSLAIVLCEYLAQAGFQTHIIDNGLEVIDWVKQKHPDLLILDLMLPNRDGLDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV + + D++ GL+ GADDYI KP++ E+VARI+ ++RR+ Sbjct: 68 YRELRT-FSQVPVVMATARVDEIDRLLGLELGADDYICKPYSPREVVARIKNVLRRTVEV 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A S G + K + + LT E++++ + ++ + +Y Sbjct: 127 AASSPQHGLTINDKQMK-ATFDSNELTLTPAEFRLLSFFNHHPGQVFNRDQLMQEIYADH 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID I LRKKL + A YI++++G GY Sbjct: 186 RLVTDRTIDSHIKNLRKKLQDVAPDNEYIKSIYGVGYRF 224 >gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 M+ +L++ED+ A+A I + L+ F + G D I+LD L Sbjct: 1 MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLPG 60 Query: 57 IPGFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 G + R R + P+ +L+ DKV GL +GADDYI+KPF+ +EL+ARIRA Sbjct: 61 ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 115 I-VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + RR+ Q + G+L ++ A V QG I + E++++ L ++ Sbjct: 121 VLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRAQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++ E + +DV + +LR+ L A IETV G GY L A Sbjct: 181 LLDKVWGDHVFIEERTVDVHVKRLREALGMAGA---LIETVRGAGYRLSAQA 229 >gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 367 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++++ I++ L+ E F ++ G + I L K IILD+ L I G+ Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV ++ ++ + +L+ I+D+V+GL GADDY+ KPF+ +EL+ARI A +R S Sbjct: 208 EVCSEIK-KWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+ +N A + + + + L+ EY +++ L L+K L ++ Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +V I++V+I LR K+ + + I TV G GY Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN--EHSIIRTVRGVGYK 364 >gi|228991893|ref|ZP_04151829.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228998007|ref|ZP_04157608.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229005564|ref|ZP_04163274.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228755664|gb|EEM04999.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228761740|gb|EEM10685.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228767622|gb|EEM16249.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DD + + L+ E + V+ + G+ + + ++D+ + I G+ Sbjct: 2 IHILLADDDGHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLAVVDIMMPFIDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ + V+ I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV I +LR + S I+TV G GY L Sbjct: 181 MDFEGDERTVDVHIKRLRDRFSKRTDDFQ-IKTVRGLGYKLE 221 >gi|168178370|ref|ZP_02613034.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226948239|ref|YP_002803330.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182670982|gb|EDT82956.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226841050|gb|ACO83716.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 240 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG + E D +ILD+ L D G+ Sbjct: 10 KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRAKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ G +N+ + +G I L KE +I + N ++KE Sbjct: 129 YVENASEEKNILSFGPFELNISKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLV 235 >gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 234 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 11/228 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTD 56 M+ IL+IED++++++ +E L E +NV+ G G+++ + + D ++LD + Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G EVLR ++ PV ++ + DKV GL +GADDY++KPFN EEL+AR+R I Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R++ A G +S+N TVE Q LT +E+ ++ L + ++++ L Sbjct: 133 RKNTQPAIYSY--GTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ +D ++ LRKKL IET+ G GY L ++ Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLDKN-----MIETIRGLGYRLNKD 233 >gi|327480541|gb|AEA83851.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas stutzeri DSM 4166] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 3/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + + + L S+ + V + G DG+ + D ++LDLGL D+ G +V Sbjct: 8 VLIIDDEPQIRKFLRISLASQGYRVLESTDGRDGLARAALEQPDLVVLDLGLPDMDGQDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR + PV +LS SS +KVR L +GA+DY++KPF +E +AR+RA++R + Sbjct: 68 LGELR-SWTRVPVIVLSVRSSEAEKVRALDAGANDYVTKPFGIQEFLARVRALLRLPQST 126 Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G L ++L + V + + LT KEY ++ L+ +T++ L ++ Sbjct: 127 TNSPGQVLCGALCIDLAFRRVSLGERMVSLTRKEYAVLAELARHAGRVVTQQHLLKIVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + V I LR+KL + +I T G GY L +A Sbjct: 187 PSHAGDSHYLRVVIGHLRQKLGDDPAAPRFIVTEAGVGYRLISDA 231 >gi|325846727|ref|ZP_08169642.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481485|gb|EGC84526.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + +++ L+ F++ GE+ +++ + ILD+ L I G+E Sbjct: 4 KILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGISGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + ++S S DK+ GL+ G DDYI KPFN +EL+ R+R+++RR Sbjct: 64 VCDTIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLRRVNF 123 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +LI G ++L A+ I +T E+ +++ L K +++ Sbjct: 124 TDDEKKEKNNNLIEDGIFKLDLYARNFFKNNKEIDVTPTEFIILKNFILNKGKAMSRMEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ YIETVWG GY R Sbjct: 184 MKDTWGDNYSTDTKIVDVNIRRIRAKIEENPAKPEYIETVWGTGYRWR 231 >gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1] gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1] Length = 219 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K + I + V G + + L +D ++LD+ + I G+ Sbjct: 1 MKVLLVEDEKLIRLFIVEYFSKQGAAVVEASDGYEALSLL-DETYDIVLLDIMMPGIDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R K P+ +S +S E+K++G + GADD+ISKPF L A+ A+++R Sbjct: 60 EVCKLIR-QKSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLN 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +SL V G + ++ D V V I L+ KEY ++ K L+++ L+H++ Sbjct: 119 KGNESLDV-GMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+D ++ KLRKKL A+ YI+TV GY+ Sbjct: 178 YDYYGDQRIVDTYVKKLRKKLLEASS---YIQTVVKIGYMFDP 217 >gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium intracellulare ATCC 13950] Length = 226 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V G + ++ D +ILDLGL DI G + Sbjct: 3 RVLVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGLPDISGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL LR ++ PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 63 VLAGLRG-WLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +I T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 122 ASEVEQPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + V++ +LR+KL + ++ T G GY Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSNPKHLLTESGMGYRFE 225 >gi|254713505|ref|ZP_05175316.1| Transcriptional regulatory protein chvI [Brucella ceti M644/93/1] gi|254716139|ref|ZP_05177950.1| Transcriptional regulatory protein chvI [Brucella ceti M13/05/1] gi|261217910|ref|ZP_05932191.1| regulatory protein BvrR [Brucella ceti M13/05/1] gi|261321240|ref|ZP_05960437.1| regulatory protein BvrR [Brucella ceti M644/93/1] gi|260922999|gb|EEX89567.1| regulatory protein BvrR [Brucella ceti M13/05/1] gi|261293930|gb|EEX97426.1| regulatory protein BvrR [Brucella ceti M644/93/1] Length = 239 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRHLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128 Query: 123 AQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 129 DGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238 >gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 232 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A +I L +E + V G ++ + DA++LD+ L I G EV Sbjct: 4 ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGIDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A PV +L+ D + GL GADDY++KPF+ ELVAR++A++RR Sbjct: 64 -CRRIQADRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 122 Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ S I GD+ V+ + V IHLT E+ ++ +L+ T LT+E Sbjct: 123 AQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRERL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D D + +D I LR+KL I TV G GY +D Sbjct: 183 LAEVWDWVDASGTRTVDSHIKALRRKLGAD-----LIRTVHGVGYAFEPPEEDAP 232 >gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 119/227 (52%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++++A +EL L++E++ V+ G++ ++ K +D ILD+ + D+ GF + Sbjct: 5 ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPDLDGFSL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R PV +L+ ++ DK+ GL GADDY++KPFN EL AR++ +RR + Sbjct: 65 LKKIR-EDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYTRY 123 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + ++LT E+ ++ L ++ + +T E Sbjct: 124 NTNEPAVNQQIYDFNGLMINNDNHKCTLYDQPLNLTPIEFSILWYLCSKRGSVVTSEELF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + + +LR+K++ A +++TVWG GY + Sbjct: 184 EAVWQEKYLDNNNTVMAHVARLREKMNENARKPKFVKTVWGVGYTIE 230 >gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DD + I L+ E F V GE+ L + D I+D+ + + G+ Sbjct: 1 MNILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R PV +L+ I DK +G Q+G DDY+ KPF +ELV RI+A++RR Sbjct: 61 ELCREIR-RYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRRFG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I + ++ + + + + L KE++++ L+ + T+E ++ ++ Sbjct: 120 LVSSDTIQLNNTVIDRKSYEIRCKDKTLILPLKEFELLSQLASCPDRIFTREQLISLVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR++ S I TV G GY L Sbjct: 180 QDFTGDARTVDVHIKRLRERFSQTDD--FIITTVRGLGYKLE 219 >gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLK-SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D++ L ++ + ++ F V GE+ + D +ILD+ + + G E Sbjct: 7 ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERVDLVILDVDMPGMNGRE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR I PV +L+G S D V GL++GA+DY++KPF+ L+AR+R+ +R Sbjct: 67 VCRQLREKGIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLRSFEQ 126 Query: 122 HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G K + +G RI LT KE ++++ L ++ +E L+ ++ Sbjct: 127 TEDATFDIGPYEFRPSMKVLRTKEGRRIRLTEKETEILKYLYRAGGKSVARETLLSEVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I +LR+K+ + T G GY LR Sbjct: 187 YNAAVTTHTLETHIYRLRQKVEPDPSNAQLLLTDTG-GYRLRP 228 >gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS678] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +++ F + + I L K D I+LD G + Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + L+ + P+ +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS Sbjct: 64 LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123 Query: 120 RGHAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + V V + + E++++ ++E L+++ Sbjct: 124 APTRLEETIDVQGLMLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 225 >gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28] gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis M5-90] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++ R+RA++RR+ Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224 >gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597] gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +E+ + D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +N + V+V + LT K ++++ LL+ +K ++ Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + ++V I LR++L+ A + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227 >gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 253 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD+ + + L + V G + + D I+LDL L G Sbjct: 6 HLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPGEDGLS 65 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 + R LR TPV +L+ M D++ GL+ GADDY++KPF+ EL+ARI+A++RR Sbjct: 66 LCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRRV 125 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 L G + G + L+ EY ++ + LT Sbjct: 126 AAPLVAGGPTAAGTVLRFEGWSLDLTKRELRSPDGVLVQLSAGEYDLLVAFAEHPQRVLT 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L+ P + IDV + +LR+K+ I+TV G GY+ + Sbjct: 186 RDQLLDLARGRSAVPFDRSIDVQVSRLRRKIEPDPADPTLIKTVRGGGYLFTPSV 240 >gi|302530944|ref|ZP_07283286.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439839|gb|EFL11655.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 250 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E + V G + + + + + DA++LD+ L D G E Sbjct: 25 RVLVVDDESTLAELVSMALRMEGWEVRSAGTGAEAVRIGRDFRPDAVVLDVMLPDFDGLE 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV L+ ++ED++ GL +G DDY++KPF+ EE+ R+RA++RR+ G Sbjct: 85 VLRRMRAETPYLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +V GDL+++ D++ V G + LT E++++ L L+K L+ + Sbjct: 145 VSGATGSQLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPRRVLSKAQILDRV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++++I LRKK+ A + I T+ G GYVL+ A Sbjct: 205 WSYDFGGQANIVELYISYLRKKI--DADREPMIHTMRGAGYVLKPAA 249 >gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 232 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 273 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249 >gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum WAL-14673] gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum WAL-14673] Length = 236 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL +DD + + ++L+ E F V G++ +E D IILD+ + G Sbjct: 9 RILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVMMPGKSGIL 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R P+ L+ + DK G +G DDY++KPF+ ELVAR++A++RR Sbjct: 68 ACLEIRKKLTV-PILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126 Query: 122 HAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + D + N D++ V ++G I LT EY+++ LL+ + T + Sbjct: 127 YQGGGNRKEDDAQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186 Query: 174 FLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + V I LRKKL YI VWG+GY + Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236 >gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 237 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 2/234 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ + K N+ + V G G E+ + +D IILD L G Sbjct: 1 MRLLLVEDEKRLADALAYIFKKNNYGIDVAYDGITGQEMAETGIYDLIILDRMLPKKEGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL+ LR I TPV +L+ ++ED+V GL +GADDY+ KPF EEL+ARIRA R+S Sbjct: 61 SVLKHLRSIGIKTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARRQS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G L+++ + ++ LT KE Q++EL +TKE L+ ++ Sbjct: 121 ENFHSEKIRVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 E E+ ++++I LRKK+ K +ETV G GY L+E E Sbjct: 181 GLDSEVELNNVEIYIHYLRKKIVPE-KSKVRLETVRGVGYCLKEEPNVSQAENQ 233 >gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25] gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + + L+ ++V + G DG+ FD I+LD+ + + G+ Sbjct: 1 MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV L+ I D+++GL+ GADDY+ KPF+ ELVAR+R + RR Sbjct: 61 EVLRRLRKEADT-PVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +++ + V G RI LT KE+ ++ L + ++ L++ + + ++D Sbjct: 120 SREEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV + +LR K+ + I +V G GY Sbjct: 180 MNFDSDTNVVDVAVRRLRLKI-DDPFQLKLIHSVRGIGYRF 219 >gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 84/216 (38%), Positives = 129/216 (59%), Gaps = 1/216 (0%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G E+++A Sbjct: 2 VEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIKA 61 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ G ++ Sbjct: 62 LRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWSKP 121 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 + G ++++L A+TV V G + LT EY+++E L + ++K H+Y + Sbjct: 122 TLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQQDFDR 181 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++VFI +LRKKL G IETV GRGY Sbjct: 182 DSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 216 >gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804] gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii] Length = 232 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V E L + D I+LD L G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWMLPGTSGLTL 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + + PV +L+ + +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L ++ + + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDIIDVGGLKLDPVTHRLSGHEQALSIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G ++ETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRF 225 >gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 227 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + + G DG+ L E+ +ILD+ L + G+ Sbjct: 1 MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I R Sbjct: 61 QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL ++L + V G R+ LT KE+ ++ELL R L + + + ++ Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +I+V + +LR K+ + I+TV G GYVL ++ Sbjct: 181 DMNFDSDTNVIEVAMRRLRVKI-DEGHSIKLIQTVRGMGYVLEVPEEE 227 >gi|323463631|gb|ADX75784.1| heme response regulator HssR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++DD + + + L+ + + GE +E + + D I+D+ + + GFE+ Sbjct: 6 LIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEKHTIDIAIVDVMMDGMDGFELC 65 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 L+ PV +L+ ++ DK R +G DDY++KPF EL+ RI+A++RR + Sbjct: 66 ETLKYDYEY-PVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIVT 124 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 ++L+ G+L+++ V+V+ + L KE++++ LL +E + ++ Sbjct: 125 ETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGIDY 184 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + + +DV I +LR +L YIETV G GY + ++A Sbjct: 185 EGDERTVDVHIKRLRARLKKLGAN-VYIETVRGIGYKVTQDA 225 >gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 +IL+ ED+ A+ + + L ++V D GE ++ + +FD ILD+ + I G Sbjct: 3 KILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 F+V + LR + +LS + DKV GL GADDY++KPF+ EL+AR+ ++ R Sbjct: 63 FQVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYRRV 122 Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S + + + +G+ ++NL + + G I LT E+Q++E L + Sbjct: 123 ALAQSHSENNFKEELKSGEFTLNLRNRALMKSGKMIELTQVEFQIMEYFFSNPGVALDRI 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LNH++ E KI+DV I +LR K+ + +I TVWG GY Sbjct: 183 DILNHVWGDAYVGEDKIVDVNIRRLRMKVEDEPSNPKHIITVWGLGYKW 231 >gi|302876997|ref|YP_003845630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687688|ref|ZP_07630134.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579854|gb|ADL53866.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + +L E + V G + + +++D ++LDL L I G + Sbjct: 7 VLIVEDDIDINELLCNILIKEGYRVRGAYSGSEAKMCLEQFDYDIVLLDLMLPGICGENL 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ ++S ++ DK+ L+ GADD++SKPF+ E+VAR+ A +RR + Sbjct: 67 IAEIR-KVKVMPIIVISAKTAQGDKINVLKLGADDFVSKPFDIYEVVARVEAQLRRYKEF 125 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + ++ +++++LDA+ V+ ++ LT +E++++ELL T+ Sbjct: 126 SNSKEESNRLIYKNITLDLDAREAFVKDKQLSLTFREFEILELLMKNPKKVFTRANIFQT 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + I+V + LR KLS YI+TVWG G+ +E Sbjct: 186 VWNDEFLGDDNTINVHMSNLRSKLSEVDSETKYIQTVWGIGFKFQE 231 >gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda] Length = 219 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F + G+ G+ + +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLNKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 61 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V I LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHIHHLRRKLGSH-----FIRTVHGVGYTLGD 218 >gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7] gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7] Length = 230 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+D+ + + + L ++ + V GE+G+ D ++LDLGL D G ++ Sbjct: 8 ILLIDDEPQIRKFLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV +LS +S +KV L GA+DY++KPF +E +AR+R ++R++ Sbjct: 68 LRDLR-EWSAVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L V+L + V + G + LT KEY ++ L+ +T++ L ++ Sbjct: 127 ESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQLLRDIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V + LR+KL + ++ T G GY LR++ Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230 >gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +++ F + + I L K D I+LD G + Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ + P+ +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V V + + E++++ ++E L+++ Sbjct: 124 APTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 225 >gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL++D+ + +EL L++E F V GE + + +E ++LD+ + + G Sbjct: 7 IRILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ V +L+ I+D+V+GL GADDY+ KPF+ EEL+ARI+A +R Sbjct: 67 EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G +++ K + QG + L+ EY++++LL + + L+K LN ++D Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL + I T+ G GY Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGD--KEHRVIRTLRGAGYR 224 >gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum UW551] gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum UW551] gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 226 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 1 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 61 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGHPVP-LLKTVRGLGYRL 222 >gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] Length = 229 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+KA+ I L L +N+ V + + ++ + I+LD L G + Sbjct: 4 KILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKL-DEKPKLILLDWMLPGRSGIQ 62 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ P+ +L+ SS +D + L +GADDY++KPF+ + L+ARI A++RR+ Sbjct: 63 FIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRRT 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + ++ +AK V Q I L+ EY+++ ++E L+ ++ Sbjct: 123 YQNNDVINIDDL-ILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + +D +I +LRK L Y++TV G GY + +D+ Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEPCGFE-RYVQTVRGSGYRFSNHFRDD 229 >gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] Length = 279 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 54 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 113 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 114 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 173 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 174 SPMAVEEVIEMQGLSLDPSSHRVMSNEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 233 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 234 WGTNVYVEDRTVDVHIRRLRKALETD-GHDRMVQTVRGTGYRF 275 >gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 225 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +A +EL LK F V G +G+ + D ++LDLGL D+ G E Sbjct: 3 RILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGLPDLDGGE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ +L+ ++E KV L GADDY+ KPF+ EL+ARI+ +R Sbjct: 63 VARRIR-ATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARIQVQLR--HR 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G+L++ + V + + L+ KE+ ++ LL R +++ ++ Sbjct: 120 EGSEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV + LR KL A Y+ TV G GY LR + E Sbjct: 180 PLGRDSNVLDVHVANLRAKLREAGAY-GYLRTVRGLGYALRPRGEGE 225 >gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDDK ++ I L+ NF V++ + GE +L + +D I++D+ L I G Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R KI TP+ ILS +S+ +DKV L SGADDY+ KPF+ +EL++R+ A+ RR++ Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G L++N D V I L+ +EY+++ L +N +++ L Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I LR K+ + +I T+ G GY+L+E Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEHNH---KFIHTIKGIGYMLKE 223 >gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25] gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25] Length = 232 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G++ Sbjct: 4 KILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGWQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+ARI+ + R Sbjct: 64 VLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHIS 123 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + DL +++ + G + LT KEY ++ELL + L++ + Sbjct: 124 AQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 184 VWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 229 >gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +D+ ++ +++ LK E F V GED +E + + D +ILD+ + + G+E Sbjct: 4 RILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLGGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L K + + + + I DKV GL+ GADD++SKPF+ EL+ARI+A+VRR Sbjct: 64 VCRRLESRKGVGILLL-TAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ G L V ++T E+ + LT KE+ ++ LL T++ L Sbjct: 123 EGAPAPEGTEVILGPLRVRPSSRTAELGVKALDLTPKEFDVLALLVSHTGRVYTRDDLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + +D+ I +LRKKL ++ ++TV+G GY Sbjct: 183 QVWGIDYVGGTRTVDIHIQRLRKKLEP---HQSMLQTVYGIGYK 223 >gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 224 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++ED+ L + + L ++V G++G+ Y +D I+DLGL I G Sbjct: 1 MRALIVEDEPHLQEQLAVALGRAGYSVDRASDGKEGLYFGTEYNYDIAIVDLGLPQIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R R + PV +L+ SS +DKV GL+ GADDY+ KPF EE+VAR A+VRR+ Sbjct: 61 DVIRRWRESNRIFPVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G + ++ + K V + + LT EY+++E L + ++K + H+Y Sbjct: 121 GITQSSIRLGPIELDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + I+VFI +LRKKL IETV G GY + + Sbjct: 181 QDFERDSNTIEVFIGRLRKKLDPD-NQWKPIETVRGMGYRMNPS 223 >gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL ADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 223 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD + + + L E + V + + + L D ++D+ + + GF Sbjct: 1 MRILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVMMPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L PV +L+ +EDK RG +G+DDY+ KPF +EL+ RI AI+RR Sbjct: 61 TLTETL-TQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRMD 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I G L ++ + V + + L KE++++ LL+ R N T+ + ++ Sbjct: 120 KKNQITIQVGQLVIDRRSFEVIIGEETLILPLKEFELLALLASRPNQVFTRSYIMEQVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ++ + ++R++L+ I TV G GY L Sbjct: 180 YDYDGDEQTLNTHVKRVRERLNRFDTAVEII-TVRGVGYKLE 220 >gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis CS] Length = 232 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 4/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V E L + D I+LD L G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGLSL 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + + PV +L+ + +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I L ++ + + + E++++ ++ L+ ++ Sbjct: 125 PQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV I +LRK L +G ++ETV G GY Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRFTAQVP 230 >gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 71/219 (32%), Positives = 123/219 (56%), Gaps = 2/219 (0%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ VL+ Sbjct: 1 IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGWGVLK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 RLR-DTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRET 119 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 +V GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D + Sbjct: 120 ERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDMNFD 179 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V I +LR K+ + A I TV G GYVL Sbjct: 180 SDTNVVEVAIRRLRAKV-DDAFPVKLIHTVRGVGYVLEP 217 >gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249] gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249] Length = 232 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGDQPLELTVKSFELLWVLASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 ++ + ++V I LR++L+ I+TVWG GY + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPSIKTVWGLGYKME 226 >gi|322435100|ref|YP_004217312.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321162827|gb|ADW68532.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 263 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD AL ++ LK E +V + G+ G++ + D ++LDL L G Sbjct: 1 MRVLIVEDDAALGIFLQKGLKLEGHDVQLVGDGQAGLDHAMEHAPDLMVLDLSLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL + T V +L+G + + D+V+ L GADD + KPF+ EL AR RA++RR + Sbjct: 61 QVLEEMHGHFGGTSVLVLTGRNQVSDRVKCLNLGADDCLLKPFSFSELNARCRALLRRRQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + +N + V G I LTGKE+ ++E L + T ++ L ++ Sbjct: 121 HSADQTLRYAGVELNRIDRRVTRDGLSIELTGKEFALLEFLMQARGRTCSRSELLREVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG---KNYIETVWGRGYVL 221 + ++DV++ LRKKL + G IETV G GY++ Sbjct: 181 MSPDAGTNVVDVYVNYLRKKLGSTRSGIGADRVIETVRGEGYMM 224 >gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob [Alicycliphilus denitrificans BC] gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus denitrificans K601] gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB [Alicycliphilus denitrificans BC] gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family [Alicycliphilus denitrificans K601] Length = 233 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+ A+A I + L+ F + E D I+LD L + G + Sbjct: 6 HVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWMLPGMSGLQ 65 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R R P+ +L+ DKV GL +GADDYI+KPF+ +EL+ARIRA+ RR Sbjct: 66 LARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G LS++ QG + L E++++ L ++ L+ + Sbjct: 126 APEQVADSVAIGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSRAQLLDKI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV + +LR+ L A+ +ETV G GY L Sbjct: 186 WGDHVYIEERTVDVHVKRLREALGEASA---MLETVRGAGYRL 225 >gi|317132867|ref|YP_004092181.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470846|gb|ADU27450.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+A L E F V ++ G G+E FD I+LDL L I GF Sbjct: 3 KILIIEDDTAIAAIERDYLLVEQFEVVISQDGRSGMEKALQGSFDLILLDLMLPGIDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI------RAI 115 V R LR + P+ +++ DK+RGL GADDYI KPF+ LVAR+ A Sbjct: 63 VCRRLR-ESLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R++ A I G + +N D V V I L KEY+++ ++ + L +E Sbjct: 122 LRKTDRTAPIQIAIGSIRINTDTHRVYVNDTEIELKNKEYELLLFMAQNADVVLNRETLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I +LR K+ G YI+TV G GY + Sbjct: 182 ERIWGMDAMGDNATVAVHINRLRDKIEEDPGNPRYIQTVRGAGYRFK 228 >gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 270 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F++ G G E +DA+ILDL L + G Sbjct: 52 MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 232 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 269 >gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + +L+ F + + I D I+LD L G + Sbjct: 4 RILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + ++ ++ P+ +L+ EDKV+GL+ GADDY++KPF+ +EL+ARI+A++RR Sbjct: 64 IAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V G + + E++++ ++E L+H+ Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSAGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK ++ G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIAPM-GHDKLVQTVRGSGYRF 225 >gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] Length = 243 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQQQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224 + I++ +I LRKK + + G K IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMIRAP 241 >gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ ++ + I+ L EN+ V V G G+++ FD IILD+ L D G E Sbjct: 3 KILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIMLPDKNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R I TP+ L+ + + E+ GL GADDY+ KPF EL ARI+A++RR + Sbjct: 63 VCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRGKS 122 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + DAKTVE I LT EY+++ +L K L++ L Sbjct: 123 NDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D E ++DV+I LRKK+ A I TV G GYVL+E Sbjct: 183 SAWDINFNMETNVVDVYINYLRKKMDTDANN-KLIHTVVGMGYVLKE 228 >gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR [Xenorhabdus nematophila ATCC 19061] gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + I D ++LD L G + Sbjct: 4 RILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +++ ++ + PV +++ + ED+VRGL GADDYI+KPF+ +EL+AR++A+ R Sbjct: 64 LIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLRRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ +I L ++ + V QG +++ E++++ ++E L+++ Sbjct: 124 SPMEAEEVINMDGLILDPSSHRVSSQGLDLNMGPTEFKLLHFFMTHPERVYSREQLLDYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGKHDKMVQTVRGTGYRF 225 >gi|218441450|ref|YP_002379779.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174178|gb|ACK72911.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 614 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + LK ++ V V G+ L + ++D ++LD+ L + G Sbjct: 1 MKILLVEDDPLTRTVLTQTLKDHHYTVDVATDGQTAATLTQVSQYDLLLLDVVLPSLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+ S D++ GL +GADDYI KP N E L+ARIRA+ RR + Sbjct: 61 SLCQQLRFQGFQEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S+I +L VNL+ V G+ IHLT KEY ++EL + ++ + L L+D Sbjct: 121 NISSSVIHWENLQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D P + + I LR+KL AAG + IETV+G GY LR+ + Sbjct: 181 LADSPGEETVSTHIKCLRQKL-KAAGVPDPIETVYGLGYRLRKPS 224 Score = 58.1 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD A+ I +L V + + D +ILDL + + G + Sbjct: 490 RVMIVDDDSAILSQIVDLLTPWGIEVITLKYSHNFWQELTTNNPDLLILDLEIPNFNGLD 549 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106 + + +R P+ LS + + +GADDY++K + + Sbjct: 550 LCKVVRHDPKWQNLPIIFLSIYNEENIIQQMFLAGADDYLNKTYEPQ 596 Score = 43.8 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 63/128 (49%), Gaps = 2/128 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT--DIPGF 60 IL+I+DD ALA I L + N V + + E+ + I+LDL GF Sbjct: 365 ILIIDDDLALAERIRLEALAWNLRVEIATNLQIAREIIIQLSPNIILLDLNFETAREDGF 424 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L L + + P+ + +G S+ D+V+ + GA ++ K +E++ + + ++ Sbjct: 425 SLLEELGKTRPNLPIVVFTGRESLSDRVKVSRLGAKAFLHKSLPAQEILKTVTNVFKQHL 484 Query: 121 GHAQSLIV 128 H+++ ++ Sbjct: 485 DHSKNRVM 492 >gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L++ F GE+ + L + DA++LD+ + GF V Sbjct: 6 VLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ L+ + DKV+GL+ G DDYI KPF+ EL+AR+ A++RR + Sbjct: 66 CARIR-EQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+++ +TV V G + LT KE++++ L+ + +++ L ++ Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR KL +AA +I+TVWG GY Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAA---RHIQTVWGIGYKFE 223 >gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] Length = 227 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L +E + V G++G++ K IILD+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMPEMDGI 65 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R T + L+ +V G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + GDL +N + + + L KE++++ LL+ + +E L+ Sbjct: 126 LKEEEEGDSSVKIGDLVINREEYKIIKDKKEMVLPRKEFELLSLLASKPGKVFKREDILD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + IDV I KLR+K+ + +T+ G GY Sbjct: 186 KVWGNEVVVGGRTIDVHIRKLREKIGD-----KKFKTIKGVGYKFV 226 >gi|311033146|ref|ZP_07711236.1| two-component response regulator; MrsR2 protein [Bacillus sp. m3-13] Length = 236 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++D+K L I+ L E F + + G + + +ILD+ L D G+ Sbjct: 5 RILIVDDEKDLCTLIKTALIKEGFSEIRIAGTVNQGWNEFNDFHPNIVILDVMLPDGEGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R PV LS + DK+ GL G DDYISKPF+ +E+ R++A +RR+ Sbjct: 65 DLCKKIR-EISRVPVLFLSAKTEEVDKILGLAIGGDDYISKPFSPKEVAFRVKAQLRRAG 123 Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +I G S+N + V G + LT KE ++ N ++K Sbjct: 124 YSTVGASTSNKNEKVISVGSFSINHEETEVMKDGKMLELTAKEVGLMACFMRNPNHIISK 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E N ++ + V I +LR+K+ + YI TV G GY Sbjct: 184 ETLFNKVWGEEFYGADNTLTVHIRRLREKIEDTPSKPTYIITVKGLGYRFIP 235 >gi|253582051|ref|ZP_04859275.1| response regulator [Fusobacterium varium ATCC 27725] gi|251836400|gb|EES64937.1| response regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K L IE L E+F + GE +E+ + D I+LD+ L + G+E Sbjct: 4 KILIVEDEKNLIKVIEDTLVEEDFITFKALDGETALEMFYEHNPDLILLDINLPKMNGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ S D+++GL GADDYI+KPF+ + L +I+ + Sbjct: 64 VCQNIRRESNI-PIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKK---ILKI 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S +LS + + + V G I LT +E Q +E L K ++++ LN ++ Sbjct: 120 DENSSYKFSNLSFDFRSGELVVNGENIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +++D + +LRKKL + + + I+T+ G GY+ EN Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS---DMIKTIRGMGYIFDEN 219 >gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579] gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L] gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W] gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1] gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187] gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI] gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579] gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L] gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W] gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1] gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 63 ICKIMRGQSDV-PIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +V++ID I LRKKL YI+TV G GY + Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 220 >gi|315092676|gb|EFT64652.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 236 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + + ++LDL L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 + +R P+ +L+ S D V+ L +GADDY+ KPF EL+ARIRA +R + Sbjct: 70 CQDIRRESGV-PIIMLTARSDTPDVVQRLGAGADDYVCKPFRSAELIARIRARLRTPVAQ 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL+++ A V++ G I LT EY ++ ++ N ++E L ++ Sbjct: 129 REEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235 >gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica] Length = 239 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L I+LDL L G Sbjct: 6 KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESISLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR S P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 VCQRLRNQNNSVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G S+NL + + I LT E+ ++++L + L++ Sbjct: 126 KLLGVPTEDDAIINFGKFSLNLSTREMFQGDEHIPLTSGEFSVLKVLVSYPSVPLSRNKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV I +LR+ + YI+T+WG GYV + Sbjct: 186 MNLALGREYSTMKRSIDVLISRLRRVIEEDPAHPRYIQTIWGLGYVFVPDG 236 >gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 7/234 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIED+++L + L+ E F V G+DG+ + D +ILDL L I G E Sbjct: 5 KVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLMLPVIDGLE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + + +L+ + D++ G GADDY++KPF + L+ RI+A++RRS Sbjct: 65 VCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRRS 124 Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ +IVT + ++ T + G +HLT E++++ L+ + ++ Sbjct: 125 QAGEQSRDVIVTRGIEIDRINHTARLNGEELHLTPTEFRLLWTLARSPGRPFGRNELMDR 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + IDV + LR+KL A + +ETV G GY R + E Sbjct: 185 CRGEDANALERTIDVHVRSLRQKLGALA---DIVETVRGVGYRFRAENSEVIAE 235 >gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum 3TCK] gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum 3TCK] Length = 239 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRNANSVLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSIDSKIVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNSREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + + Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGNE 238 >gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 225 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + N+ G G+ L ++D IILD L + G Sbjct: 1 MKILMVEDDATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G LS+ L + V + G I L KE+Q+++ L +N +++ + ++ Sbjct: 121 SQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] gi|151283163|gb|ABR91573.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L +D IILD+ L DI G+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR A S P L+ + D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++L + G R+ LT KE+ ++E L K L + + + ++ Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + +IDV I +LR K+ + I T+ G GYVL + A Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDD-YDPKLISTIRGVGYVLEDPA 225 >gi|297560476|ref|YP_003679450.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844924|gb|ADH66944.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD + ++ + L++ +++ V G D + D ++DLG+ + G Sbjct: 1 MRILVADDDPQILRALRVTLRARGYDIVVATNGADALNAAVDQRPDLYVIDLGMPHLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EV+ LR S P+ ++SG + DKV+ L +GADDY++KPF +E +AR+RA R + Sbjct: 61 EVIEGLRG-WTSAPILVVSGRTDSVDKVQALDAGADDYVTKPFAIDEFLARVRALTRRGA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A+ L+ G+L+V+L A+TV +G + LT E++++E+L +T++ L Sbjct: 120 CGDAEPLVRLGELTVDLSARTVTREGGSGAEGVRLTPTEWRILEILMRHAGKLVTRQRLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + +++ +LRKKL ++ T G GY + Sbjct: 180 ADVWGSEHVTDTGYLRLYVSQLRKKLEPDPKAPRFLITEPGMGYRFQPPG 229 >gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 223 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQ-KQTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223 >gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVMANDDALDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-AGHDKLIQTVRGAGYRF 225 >gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+L+L L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198] gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198] Length = 240 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F + + L I+LDL L G Sbjct: 6 KVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQMDRLLTRESIHLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYISKPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSQDNAIISFGKFKLNLGTREMFHEEEHMPLTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGYVFVPDG 236 >gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 233 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + +E+ L ++ ++VY G + ++ K + D ILD+ L DI GF Sbjct: 4 KILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIMLPDIDGFR 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K P+ +L+ DK+ GL GADDYI+KPFN E+VAR++ +RR + Sbjct: 64 LCQKIR-EKFYFPIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYQS 122 Query: 122 HAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + N + + G I LT E+ ++ L + + E Sbjct: 123 YNSPNLSQSEEKDEYDIRGLLINRVSHKCYLYGKEIALTPLEFSILWYLCEHQGKVVASE 182 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + I +LR+KL+ + +I+TVWG GY + Sbjct: 183 ELFEAVWKEKYLRNSNNTVMAHIGRLREKLNEPSKNPKFIKTVWGVGYEIE 233 >gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++A+A + L+ F V + + G+ G+E ++D IILDL L ++ GF+ Sbjct: 3 KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVRQEKNI-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I + ++ A+ + V G T KE+ ++ L+ N TK Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073] gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB [Escherichia coli CFT073] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005] gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes] gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005] gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2 [Streptococcus pyogenes] gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes] gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes] gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes] gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes] gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes] gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes] gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes] gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes] gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes] gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes] gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes] gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes] gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes] gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes] gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes] gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes] gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes] gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes] gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes] gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes] gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes] gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes] gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes] gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes] gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes] gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes] gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes] gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes] gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes] gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes] gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|312867423|ref|ZP_07727632.1| putative sensory transduction protein RegX3 [Streptococcus parasanguinis F0405] gi|311097124|gb|EFQ55359.1| putative sensory transduction protein RegX3 [Streptococcus parasanguinis F0405] Length = 217 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + + L + ++ G++ ++L D ++LD+ L + G Sbjct: 1 MKILIVEDEVLIREGMSDYLMECGYEIFEAGDGQEALDLFHKEAPDLVLLDIQLPILNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R S P +L+ + K+ AD Y+ KPF+ L RI AI ++ Sbjct: 61 EVLKTIR-KTSSVPGLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKK-- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ V+ ++ T + G I + KE +++E L + T+ L+ ++ Sbjct: 118 LQPSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E P ++IDV+I +LRKKL I TV GY L Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLELD-----CIVTVRNVGYKLE 215 >gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 223 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+ + + L E + V+ + G + +++ I+LD+ + + G + Sbjct: 4 RILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMDGAQ 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 RA+R T V LS + ++ G GADDY++KP + LV+R++AI R Sbjct: 64 TCRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAILKRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+V+ + TV G I L KE+ +++LL + +E + Sbjct: 124 DADRPPEKAPAPGLTVDRERYTVIRDGQEITLPRKEFALLDLLHSSPGKLIPREEIYAKI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + IDV I KLR+K+ + I TV G GY Sbjct: 184 WGTEVVVGDRTIDVHIRKLRQKIGD-----ERIVTVKGVGYKYEP 223 >gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V+V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda FL6-60] Length = 220 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + + EN+ L + + IILDLGL + G Sbjct: 1 MKILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLPGMDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I PV IL+ ++ D+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + D+ ++L ++ V G + +T KE+ ++ L +R T+++E+ LY Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +DE ++V I LR+KL I+T+ G GY L + Sbjct: 181 WQDELSSNSLEVHIHNLRRKLGKN-----RIKTLRGVGYRLEK 218 >gi|239931754|ref|ZP_04688707.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440123|ref|ZP_06579513.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343018|gb|EFE69974.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A +E L++ F V GE G E FD ++LD+GL D GF Sbjct: 3 RILIVEDEERIASFVEKGLRANGFTTTVVPDGEAGYEYALTGGFDLVVLDIGLPDRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR ++++TPV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R + Sbjct: 63 VLRELRESRVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +GDLS++L + + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLKSGDLSLDLRTRRARAADRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL ++TV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRKKLGA-----EKVQTVRGMGYRL 218 >gi|153955660|ref|YP_001396425.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856034|ref|YP_002473156.1| hypothetical protein CKR_2691 [Clostridium kluyveri NBRC 12016] gi|146348518|gb|EDK35054.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569758|dbj|BAH07742.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 239 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D+ L +E +L+ E F ++ G DGI LCK + D ++LD+ + D+ GF Sbjct: 9 KILLIDDEIELLKLMETVLRKEGFKRIFKALKGTDGINLCKNEKPDIVVLDVMMEDMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV RA+R PV LS DK+ L GADDY++KPF+ +E+V RI+A +RR+ Sbjct: 69 EVCRAIR-EFSYVPVIFLSARGDHIDKILALGLGADDYVTKPFSPKEVVFRIKAHLRRNI 127 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GDL ++ V G I LT KEY ++ ++ N LTKEM Sbjct: 128 YIKNELTMKKEKICFGDLIIDFKKGEVLKSGKNITLTPKEYHLLCYMTQNANQILTKEMI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ E I V + KLR+KL + YI TV G GY Sbjct: 188 CDEVWNDNYEGYDNTIMVHMRKLRQKLESNPSKPQYIVTVKGLGYKF 234 >gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system with AgrS [Cupriavidus metallidurans CH34] Length = 224 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ + L +F V + G DG+ ++D +ILD+ L + G+ Sbjct: 1 MKILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR TPV L+ +ED+V+GL+ G DDY++KPF EL+AR R ++RR Sbjct: 61 EVLKELR-EHKDTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++L V G RI L+ +E+ ++ L+ R L++ +H++D Sbjct: 120 TREAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV I +LR K+ + I +V G GYVL Sbjct: 180 MNFDSDTNVVDVAIRRLRAKM-DDTYAPKLIHSVRGIGYVLE 220 >gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185] gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185] Length = 219 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|229060825|ref|ZP_04198180.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718472|gb|EEL70104.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + I G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIMMPFIDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+A + L+ F V + + G+ G+ ++ IILDL L ++ GFE Sbjct: 3 KILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K PV ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKRVREEKNI-PVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 QEIWDMESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRFK 228 >gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11] gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11] Length = 239 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSAEDKMIEFGEFRLNLGTREMFRNDEPMPLTSGEFAVLKSLVTNMREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + + Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVFVPDGAE 238 >gi|168212632|ref|ZP_02638257.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715801|gb|EDT27983.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 234 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 ILVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L VN+D K V + G + +T E+++++LL + E Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNIDRKEVMLDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC BAA-895] gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895] Length = 219 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +++N + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I+V + LR+KL + +I TV G GY L Sbjct: 181 WDEDVSSNTIEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216 >gi|150018915|ref|YP_001311169.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905380|gb|ABR36213.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+ EDD + +++ E + GE+ I + + D +ILD+ + G Sbjct: 3 IKILIAEDDNIFRDLVCDIVRKEGYMPIEACDGEEAINMFFNNNDIDLVILDVMMPVYDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +EVL+ +R K P+ +L+ + + +V GL+ GADDYI KPF+ E VAR+ IV++ Sbjct: 63 WEVLKEIR-EKSEVPIIMLTALGDEKHEVLGLKKGADDYIGKPFSYEIFVARLNNIVKKV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G+L + V + I L KEY ++ L NT L++E L+ ++ Sbjct: 122 KKKFSDEIAVGNLRIYQRTHKVVIDDEEIKLNPKEYNLLLYLVGNINTVLSREQILDKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ ID I LR KLS ++I+T+ G GY+ Sbjct: 182 GYNFDGDIRTIDTHIKTLRAKLSEQG---DWIKTIRGSGYMFE 221 >gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] Length = 249 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++D+ + + L+ F V + G ++ + D ++LD+ L D+ GF Sbjct: 16 HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++TP+ L+ + DKV+GL G DDY++KPF EE++ARIRAI+RR+ Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++ DA V + L+ E++++ L L ++K L+H+ Sbjct: 136 IENQDDGVVRVADLVLDEDAHEVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227 ++ + I++ +I LR+K + A G I+T G GY+LRE + Sbjct: 196 WEYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLREPKAE 249 >gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196] gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L+ + V + GE G++ ++D +ILD+ L I G+E Sbjct: 3 RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ K P+ ++S DK++GL GADDYI KPF+ E+VAR+ A + R Sbjct: 63 ICKQVRLKKDI-PILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 D + A+ V + G + LTGKE+ ++ ++ N +K+ Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +R+K+ K+YIET+WG GY Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227 >gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3] gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3] Length = 229 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L+ + V + GE G++ ++D +ILD+ L I G+E Sbjct: 3 RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ K P+ ++S DK++GL GADDYI KPF+ E+VAR+ A + R Sbjct: 63 ICKQVRLEKDI-PILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + A+ V V G + LTGKE+ ++ ++ N +K+ Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +R+K+ K+YIET+WG GY Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227 >gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans 568] gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 239 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED+ L + L++ + + G + + + I+LDL L G V Sbjct: 11 IMIVEDEPKLGQLLVDYLQAAGYATHWLTNGSEVVPAVHAHSPALILLDLMLPGSDGLTV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR Sbjct: 71 CRELR-RFTDIPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 129 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + L ++ QG + LT E+++++ L+ + ++E LN+LYD Sbjct: 130 LDNTQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDDY 189 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL G K++I +V+G GY Sbjct: 190 RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWEAE 231 >gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114] gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114] Length = 225 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ + L+ E F V +D G++G+ + ++ IILD L ++ G Sbjct: 1 MKILVIEDDQTTRDFVTKALEQEGFIVDSSDDGKEGLMMAISCDYQLIILDRMLPNLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV ILS + S++ +V GL +G+DDY++KPF EL+ARI I+RR+R Sbjct: 61 KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L++NL ++ V + + + L KE+ ++ L+ + +++ Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I KLRKKL + +G + IETV G GYVLR Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKL-DNSGAVDLIETVRGAGYVLR 223 >gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum] gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum] gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 231 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A + L++E F+V G I + D +LD+ L DI GF+ Sbjct: 4 KIVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV +L+ DK+ GL GADDY++KPFN E+VAR++ +RR + Sbjct: 64 LLQQIR-KTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 HAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S +++ + G + LT E++++ L + + ++ E Sbjct: 123 YNHSTASPTVEEYEKDGLILKINSHQCILYGKEVFLTPIEFKILLYLFEHQGSVVSSETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + I +LR+KL I+TVWG GY++ + Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLHEEPRKPKLIKTVWGVGYIIEK 231 >gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] Length = 230 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA + L E F V V G DG+ L ++D I+LD L I G Sbjct: 1 MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR TPV +L+ +ED+V+GLQ GADDY+ KPF ELVAR+ ++RRS Sbjct: 61 AVLAALR-QTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++L + G RI LT KE+ ++ LL R+ LT+ Sbjct: 120 PSVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D + E +++V I +LR KL + ++ + TV G GYVL Sbjct: 180 ASQVWDMNFDSETNVVEVAIRRLRLKL-DQPFEQHLLHTVRGMGYVLE 226 >gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] Length = 240 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++EDD+ LA L+S V V GE+ I + + D ++LDL L G V Sbjct: 11 IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLMLPGADGLTV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A + P+ +L+ + D+V GL+ GADDY++KP L+ARIRA++RR Sbjct: 71 CREVRSAYKN-PILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVETD 129 Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G L ++ A+ V + G + LT EY ++ LL+ T L++E Sbjct: 130 SERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGTVLSRETIFEK 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L + + + + IDV I ++R K+ + I+TV +GY+ + Sbjct: 190 LRGIQYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLFVKE 236 >gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 224 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ + L + V V G DG+ L +D I+LD+ + ++ G+ Sbjct: 1 MRILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 V++ L A++ TPV LS ++ED+++GL GADDY+ KPF+ EL+ARIR I R Sbjct: 61 SVMKKL-GARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL +++ + VE G RI LT KE+ ++ + L++ + + ++ Sbjct: 120 PQKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIASRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D + + ++DV + +LR+K+ + I TV G GY Sbjct: 180 DMNFDSDSNVVDVAVRRLRQKI-DEPFEVRLIHTVHGVGYR 219 >gi|28379053|ref|NP_785945.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557185|ref|YP_003063602.1| response regulator [Lactobacillus plantarum JDM1] gi|308181246|ref|YP_003925374.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271891|emb|CAD64796.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046112|gb|ACT62905.1| response regulator [Lactobacillus plantarum JDM1] gi|308046737|gb|ADN99280.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 17/242 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M++L+IED+K+++ + + K E ++ + G + +E+ +D + LDL L Sbjct: 1 MKLLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEMFNEDVDGWDMVTLDLNLPGKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R A + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 120 Query: 119 SR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRK 165 + + + T +N + + +I LT KE+ +++ L+ + Sbjct: 121 ADLAKTTPADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIQDLTPKEFDLLKTLAQKP 180 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E L ++D + + +D I KLR+K+ A G I+TVWG GY ++ Sbjct: 181 RQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKA--GPQIIQTVWGVGYKFDDSG 238 Query: 226 KD 227 D Sbjct: 239 VD 240 >gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + + + + + V G + ++ + D I+LD+ + I GFE Sbjct: 4 KILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQ-SSHNPDLILLDVNMPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +S P+ L+ +D+++GL G DDYI KPF+ +EL AR+ A +RR Sbjct: 63 VCRMIR-DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRREER 121 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +QS + G L+++ ++V G ++LT E+ ++ELLS+ T+E + + Sbjct: 122 RSQSQAVKIQGSLAIHYTERSVYYDGRALNLTKTEFNIVELLSMHSGQVFTREQVYDRVR 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+ I ++R K+ +A K YIETVWG GY Sbjct: 182 GYDGDGDSSIVTEHIRRIRAKM-SAVSEKQYIETVWGVGYKW 222 >gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 227 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++EDD+ ++ ++ +L+S + G++ L K FD +++DL L G Sbjct: 4 RIAVVEDDREISSILKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYKNGER 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 ++ LR + PV ++S S +E K+ L+ GADDYI KPF+ +E++ RI + R Sbjct: 64 LIGELRSRSET-PVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSGA 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ ++ GDLS+N + TV G ++ LT KE+ +++L TK +++ Sbjct: 123 FAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+V + LR KL +G K++IETVWG GY L+ Sbjct: 183 EVYYYEDNTINVHVSNLRSKLKKVSG-KDHIETVWGIGYRLK 223 >gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] Length = 248 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED++AL ++ L+SE + V V GE + + + + D ++LD L + G EV Sbjct: 24 LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83 Query: 64 RALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + P+ +L+ + D++RGL +GADDYI KPF+ EL ARIRA++RR R Sbjct: 84 RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIRP 143 Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL V+ A V G ++HL E+++++ L ++E L+ ++ Sbjct: 144 GLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAVWG 203 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV + +LRK L G + I TV GY L K Sbjct: 204 SDIYVEARTVDVHVGRLRKALKME-GLVDPIRTVRSAGYALNAGEK 248 >gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] Length = 227 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+IED+ A + LK+E + V V GE G+ + + D I+LD L + G E Sbjct: 5 HVLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHVSGIE 64 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R R + P+ +LS S DKVRGL++GADDY+ KP+ EL+AR+R R Sbjct: 65 VCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ D++++ D V + L E++++ + L++E L+ + Sbjct: 125 RPSKVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSREQLLDQV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK L+ G + + TV G GY L Sbjct: 185 WGRDVYVDTRTVDVHVGRLRKVLTQHGGD-DPVRTVRGAGYAL 226 >gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320] gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC 29906] gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response regulator) [Proteus mirabilis HI4320] gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC 29906] Length = 240 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F + + L I+LDL L G Sbjct: 6 KVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQMDRLLTRESIHLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYISKPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQAN 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G +NL + + + + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSQDNAIVSFGKFKLNLGTREMFHEDQHMPLTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV I +LR+ + YI+TVWG GYV + Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGYVFVPDG 236 >gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 230 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+ + IE+ LK+E +NV G + ++ + E IILD+ + ++ G Sbjct: 6 VLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEVHLIILDIMMPNMDGITA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS + DK+ GL GADDY++KPF+ EL+AR+++ +RR Sbjct: 66 TFKIRAERNI-PIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L ++ DAK + ++G + LT EY++ ELL + Sbjct: 125 GTYSEGATKVEIDGLILDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+ V I K+R+K+ Y++ VWG GY + + Sbjct: 185 VWNEEAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230 >gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3] gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3] Length = 239 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR A S P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S++ G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ + YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD L I L + V G + + + +ILD+ + + GF Sbjct: 1 MKILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R PV +L+ +S +D +RGL GADDY++KPF+ L AR+RA++RR Sbjct: 61 EVCRRIRAQ-SIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + GDL ++ D ++V +G + LT +E+++++ L ++ E H++ Sbjct: 120 GERPTPLQQGDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + +LR+K+ Y+ T+ GY+L+ N Sbjct: 180 GHHGIGDRTLLKQLVHRLRQKIEPNPTEPQYLVTIPSVGYMLQPNG 225 >gi|229075211|ref|ZP_04208205.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|228707988|gb|EEL60167.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|194366914|ref|YP_002029524.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349718|gb|ACF52841.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 245 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+ LA + L F V G+ C+ + + ++LDL L + G +V Sbjct: 17 VLLVEDDRRLAELVSDYLHEHGFAVQHVARGDLAGAACRQHAPELVVLDLMLPGLGGIDV 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R + P+ +L+ ++V GL+SGADDY+ KP L+AR+RA++RR Sbjct: 77 CRQIR-SFSDVPILMLTACEDDIEQVLGLESGADDYVHKPVEPRLLLARLRALLRRRHGS 135 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ G L ++ + V++ GH + L E++++ LL+ + L+++ L + Sbjct: 136 GSTGSPCRLMHGGLLIDRMQRDVQLHGHAVELGTTEFEILWLLASQPGQILSRDQILQAV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +DV I KLR+KL + A I+TVWGRGY +A Sbjct: 196 RGIGFDGLDRSVDVSIGKLRRKLGDDAREPRRIKTVWGRGYQFNPSAW 243 >gi|50842818|ref|YP_056045.1| putative response regulator [Propionibacterium acnes KPA171202] gi|289425213|ref|ZP_06426990.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|295130871|ref|YP_003581534.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|50840420|gb|AAT83087.1| putative response regulator [Propionibacterium acnes KPA171202] gi|289154191|gb|EFD02879.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|291375364|gb|ADD99218.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313764116|gb|EFS35480.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771854|gb|EFS37820.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792423|gb|EFS40518.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313801533|gb|EFS42778.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313809578|gb|EFS47314.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313813262|gb|EFS50976.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313816381|gb|EFS54095.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313827322|gb|EFS65036.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313829983|gb|EFS67697.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313833010|gb|EFS70724.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314914892|gb|EFS78723.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918039|gb|EFS81870.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314919689|gb|EFS83520.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314930068|gb|EFS93899.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956471|gb|EFT00759.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314957307|gb|EFT01410.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314963204|gb|EFT07304.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314967673|gb|EFT11772.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314972933|gb|EFT17030.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314975639|gb|EFT19734.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984091|gb|EFT28183.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315078181|gb|EFT50226.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315080885|gb|EFT52861.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315095758|gb|EFT67734.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315098866|gb|EFT70842.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101706|gb|EFT73682.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109432|gb|EFT81408.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327329939|gb|EGE71693.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL097PA1] gi|327330096|gb|EGE71849.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL096PA2] gi|327442666|gb|EGE89320.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327443798|gb|EGE90452.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327452406|gb|EGE99060.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327452714|gb|EGE99368.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327453471|gb|EGF00126.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328752586|gb|EGF66202.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328753863|gb|EGF67479.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328761465|gb|EGF74990.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL099PA1] Length = 236 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + + ++LDL L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ + + V+GL +GADDY+ KPF EL+ARIRA +R Sbjct: 70 CQDIRRESGV-PIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL+++ A V++ G I LT EY ++ ++ N ++E L ++ Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235 >gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ ++ +EL L++EN++V+ ++ + + E D ILD+ L D+ GF Sbjct: 4 KILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPDMSGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +RV + P+ +L+ DK+ GL GADDYI+KPF E+VAR++A +RR + Sbjct: 64 LCQKIRVN-HAYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRRYKK 122 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + IV L +N + + LT E+ ++ +L RK ++ E Sbjct: 123 YNSVQAGTTEESIIVHSGLVLNSSTHECILNEKPLDLTPTEFYILRILLERKGKVVSAEE 182 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I V I LR+K+ + YI+T+WG GY + Sbjct: 183 LFREIWKDEYYTKSNNTITVHIRHLREKMGDTVENPQYIKTIWGVGYKIE 232 >gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K +A I+L L++E++ VT G G+ + D ++LDL L + G EV Sbjct: 7 VLIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLMLPVLDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R +TP+ IL+ S++DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 67 ARRVR-KTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL +NLD + V G RI L+ KE++++EL + + ++ Sbjct: 126 VTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKVW-PE 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV++ LR+KL + G + I TV G GYVLRE Sbjct: 185 YTGGSNVVDVYVGYLRRKLEHD-GERRLIHTVRGVGYVLREE 225 >gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 232 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DDK + +SI L L+ E + G + +E + E I++D+ + + G Sbjct: 5 VLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLDGLSA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R K P+ ILS S DK+ GL GADDYI+KPFN EL+AR+R+ +RR Sbjct: 65 TLKIRQEKNI-PIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYTKL 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L++TG L ++ A TV V G + LT EY++++ L + L+ + Sbjct: 124 GAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIYEN 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I +LR+K+ YI+ VWG GY++ + Sbjct: 184 VWHDTPFAPENTVAVHIRRLREKIEINPKEPKYIKVVWGSGYLVEK 229 >gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 226 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ L +I L + V + GED + + +DAI+LD+ L I GF Sbjct: 1 MRVLVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR + PV +L+ ++ED+V GL +GADDY++KPF+ EL AR+RA+ RR Sbjct: 61 ETCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL+++ + V I L+ +EY ++E R L + + L+ + Sbjct: 121 VQRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV++ LR+++ + G IET+ G GY LR + Sbjct: 181 RDYENRSNVVDVYVRYLRERV-DRPFGAEAIETLRGVGYRLRADG 224 >gi|282899307|ref|ZP_06307276.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195764|gb|EFA70692.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 240 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 116/234 (49%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD ++ + + L + + G+ + L + + +ILD L D+ G++ Sbjct: 10 KIMVVDDDFSVRNLVHRFLSRK-YKTEAAADGKSAMALFEQFNPSLVILDWNLPDVNGYK 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + + ++ + V +L+ + DK++ L GADD+++KPF+ E+ R+ A +R Sbjct: 69 LCQDM-QSRTNVLVLMLTSRNDETDKIKVLAGGADDFMTKPFSLAEVEVRVDALLRRIRY 127 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ L++N + + V + + LT E+ ++ L+ ++ + + Sbjct: 128 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + + +++DV I +LRKK+ + +I+TV G GY E+ E+ Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKF------ESPEH 235 >gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 248 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L + + V GE +E + ++LD+ + + G Sbjct: 16 RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGLA 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR + TPV I+S S ++D+V GL GADDY++KPFN+EEL+ARIRA++RR Sbjct: 76 VLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQAA 135 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GD+ V LD +T +G L+ E +++LL+ T +++E + ++ Sbjct: 136 TETPIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 PE + +D + +LRKK+ + +I+ V G GY L Sbjct: 196 GYTYLPETRTLDTHVWRLRKKIGDTGEEPRWIKNVPGVGYQL 237 >gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 229 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 RIL+++DD A+ + +L+ + + + F +ILDL L D GF Sbjct: 3 RILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--R 118 E+ R +R P+ +LS ++D+V GL GADDY++KPF ELVAR+RAI+R + Sbjct: 63 ELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILRLAQ 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L + + + + LT KE ++ L + + + L + Sbjct: 123 HQRETIGSFECGKLRFDCELQRAWWDEQLLELTPKESGVLLQLMRQPSHVWGRLALLQTV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+DV + +LR K++ + I+TV G GY L+ Sbjct: 183 WGTNFLGDSRIVDVCVQRLRAKINQLDANADPIQTVRGFGYRLK 226 >gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] Length = 228 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ + + LK F V E+ + D +ILD L G + Sbjct: 5 ILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWMLPGQSGVAL 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + + P+ +L+ EDKV+GL++GADDYI+KPF+ +E+VAR+RA++RR Sbjct: 65 AKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEMVARVRAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H A + G L++N V G I L E++++ T+ L+ ++ Sbjct: 125 PHLAGEAVEIGTLALNPATHRVLASGQPIELGPTEFRLLFFFMTHAERVYTRAQLLDEVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR L +G +ETV G GY R Sbjct: 185 GDHVFIEERTVDVHIRRLRAALE-NSGNHERVETVRGTGYRFR 226 >gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8] gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 132/227 (58%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L G+E Sbjct: 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+++R + ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 64 ILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V GDL ++ K I LT KEYQ++E L + KN +TKE HL+ Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSF 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE ++ I LRK + K I TV G GYV A+DE Sbjct: 184 DDEVFSDVLRSHIKNLRK-KVDKGFKKKIIHTVRGIGYV----ARDE 225 >gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + +IE+ L+++N+NV+ G + +E+ + E +++D+ + + G Sbjct: 4 VLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVMMPRLDGTSA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ ILS S DK+ GL GADDYI+KPFN EL+AR+ + +RR + Sbjct: 64 TIKIR-ENSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRRYTSY 122 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G + + ++K V V G + +T EY+++ LL N + E Sbjct: 123 SNVTTTKEDVIKIGGIELRDESKAVFVDGEAVRITPLEYKILYLLMNHPNRVFSIEEIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + V I ++R+K+ G Y++ VWG GY + + Sbjct: 183 KVWNEPAY-NPDTVTVHIRRIREKIEINPGEPKYLKVVWGVGYKFEQPKR 231 >gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 236 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V G D + + D +LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 69 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 129 LLDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ I+T G GYVLR Sbjct: 189 EYNFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLR 231 >gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 228 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 108/222 (48%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD L ++ + E F++ +G+ L + + D +ILD+ + D+ G + Sbjct: 7 ILIVDDDNDLREALAEQFERHEGFSIIQAHNATEGMNLAEAEKPDLVILDVEMPDMDGRD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + PV +L+G S D V GL SGA+DY++KPF L+AR+RA +R Sbjct: 67 ACKLMRKHGLRVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAHLRTFEQ 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G K++ + G +I LT KE +++ L + + +E L+ ++ Sbjct: 127 SEDATFKVGPYEFRPSMKSLTDEAGKKIRLTEKETNILKYLYRAEGKAVAREELLSEVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L+ Sbjct: 187 YNANVTTHTLETHIYRLRQKIEPDPQHAYLLITETG-GYRLQ 227 >gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 218 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 116/217 (53%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 EDD+ + ++E L +++ + V GE+G+ L +D I+LD+ L I G + R L Sbjct: 2 EDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIMLPKIDGIALCRRL 61 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126 R STP+ +L+ +I DKV GL +GADDY+ KPF+ EEL ARIRA++RR A + Sbjct: 62 RSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRRGVSTAPPV 121 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 + G L ++ V Q + L+ KEY ++E ++ L HL+ PE Sbjct: 122 LEWGKLRLDPSTCEVFYQDRLLSLSPKEYSLLEFFLRHGRRVFSRAQILEHLWPFERLPE 181 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I LR+KL + IETV+G GY L++ Sbjct: 182 EATVKAHIRSLRQKLEAGGAPSDLIETVYGLGYRLKQ 218 >gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] Length = 219 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 130/223 (58%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+++ I++ L + + G + + FD I+LD+ L +I G+E Sbjct: 3 RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + PV L+ ++ EDKV+GL++GADDY++KPF EL+AR+ ++RR Sbjct: 63 LMDYIR--PLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR-CQ 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S + GDL +++ A+ V+ QG ++LT KEY+++ LL KN L ++ ++ Sbjct: 120 KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGS 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +D+ + +LRKK+ I+TV+ GY L ++ Sbjct: 180 GYMGDSRTVDLHVQRLRKKIGWEHK----IKTVYKVGYRLEDS 218 >gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IED++ LA I L+ E F G G+E + D I+LDL L + G Sbjct: 1 MKTILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSELPDLILLDLMLPGLMG 60 Query: 60 FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 E+ + L+ + + P+ +L+ D+V G + GADDYI KPF+ EL+ RIRA++R Sbjct: 61 TEICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVLR 120 Query: 118 RSRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R+ A + V G + ++ + V ++ I LT E++++ L R+ ++E L Sbjct: 121 RAAPAAPACKLVIGPVHMDTERHQVLIENEEITLTTTEFKLLLNLVERRGRVQSRETLLQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +D + +LR KL A I+T+ G GY + E Sbjct: 181 DVWGYNYVGDTRTVDTHVTRLRTKLGQAG---EMIKTIRGFGYKMEEQ 225 >gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 233 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 4/229 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ ++V V G+ E + D +ILDL L + G +V Sbjct: 4 ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RR Sbjct: 64 CRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L ++V + + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV I KLR+K + AG I+TVWG+GY+ + + Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWE 232 >gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL G DDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ H+I+ L+ F V + G L + AII DL L + G+ Sbjct: 1 MKLLVVEDEPKTLHAIQQGLEESQFEVDIAYDGLLAKRLALKNTYAAIITDLILPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR +STP+ +L+ + ED+++G +GAD Y++KPF EL+AR+R++ +R Sbjct: 61 ELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQFAELLARVRSLTKRGT 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + +NLDAKTV G I LT +E+ ++E L + L+K H+ Sbjct: 121 QVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMRNQGRVLSKPAIAEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +++V+I LRKK+ + K I T +G GY+ +E Sbjct: 181 WDLNFDTGTNVVEVYINYLRKKI-DKGFDKKLIHTHFGMGYMFKEE 225 >gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC 700633] Length = 232 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + L + V+V G +G+EL K D II D+ + + G++ Sbjct: 5 ILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMDGYDF 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I RR Sbjct: 65 ISEVQYLSPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIFRRIYRG 124 Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 V G+L +N + V V H ++LT K ++++ LL +K ++ Sbjct: 125 GNPTQVQLGNLKLNHETYEVYVDNHLLNLTVKAFELLWLLCKNPERVFSKTELYEKVWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLREN 224 + ++V I LR++LS + I+TVWG GY + + Sbjct: 185 EFIDDTNTLNVHIHALRQELSKHSSLHTPTIKTVWGLGYKIEKP 228 >gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii as4aup] gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii as4aup] Length = 221 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + ++ + GE+ L +DA+ILD+GL I G Sbjct: 1 MRILIVEDDRNLHHQLAEAVRRAGYVSDSAFDGEEAYFLGSTESYDAVILDIGLPYIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R S PV +L+ DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ Sbjct: 61 RVVEKWRQEGHSMPVLMLTARDRWSDKVHGIDAGADDYVVKPFHLEEVMARLRALIRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G++ ++ V V G I LT E++++ L + +++ HLYD Sbjct: 121 GHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++VF+ +LRKKL IET+ G GY +R Sbjct: 181 QDFDKDSNTVEVFVGRLRKKLGVD-----LIETIRGMGYRVR 217 >gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] Length = 229 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V V + GE G++ EFD ILDL L I GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQIR-DKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +I L ++ A+ V V T KE+ ++ L+ N TKE Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228 >gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 228 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVVKEVRKDSQI-PIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L++ D+ V G +I LT E+ ++ LL+ N + + Sbjct: 120 QNEVTNTEPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ IETVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 233 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 1 MR------ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL 54 MR IL+IED+K + ++L L+ E ++V GE+G+E K +D I+LDL + Sbjct: 1 MRCITLKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMM 60 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EV + +R + P+ +L+ I +KV L GADDY++KPF EEL ARIR Sbjct: 61 PKLSGEEVCKIIR-KTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRV 119 Query: 115 IVRRSRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +R + + L +NL + I LT EY + L L K +++E Sbjct: 120 ALRNKSNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREK 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ E KI+DV+I LRKK+ +I TV G GYVL++ + Sbjct: 180 ILNEVWGYDYMGEEKIVDVYINALRKKI--DYDENKFIHTVRGFGYVLKKES 229 >gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+A + L+ F+V + G+ G++ +F+ IILDL L ++ GFE Sbjct: 3 KILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKKVR-EKKNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +I + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRFK 228 >gi|242309430|ref|ZP_04808585.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] gi|239524001|gb|EEQ63867.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] Length = 222 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 +IL++EDD + + LK TD ++ +E+ K F +LD+ L ++ G Sbjct: 3 KILIVEDDLDMQKLLVDYLKKSGMEAVATDSPKEALEMLKSKQNFHLAVLDIMLPEMDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ + S I K+ G + GADDY++K + ELVARI A+++R Sbjct: 63 ELCKKMR-EISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L V+ + + V + G+ I LT E++++ LL K ++E + Sbjct: 122 ANQVLRC--GELEVDSNKRKVTLDGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ID I LR KL + A YI++VWG GY + Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKFCD 222 >gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 228 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+ + + L + V V G++ +E+ + Y D II D+ + ++ G++ Sbjct: 4 RILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQKYSIDLIITDIMMPNMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ P ++ +S DK+ L GADD+I+KPF+ ELV R+ I+RR Sbjct: 64 LIGEVQYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRIHR 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL +N + + V V + +T K ++++ +L+ +K ++ Sbjct: 124 SMGTEETLQLGDLVMNHETREVSVHDRPLDITIKSFELLWILANNPQRVFSKTELYEKVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222 + ++V I LR+ L+ + K I+TVWG GY + Sbjct: 184 QEDFVDDTNTLNVHIHALRQDLAKYSTEKTPTIKTVWGLGYKIE 227 >gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120] gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120] Length = 233 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 7 ILIADDDXXXXDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 67 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q + G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 127 SQVEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTXEFDILFLLASEPGRVFSSEYIFE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + K + V I LR KL A GG+N I+T+WG GY + Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232 >gi|228959449|ref|ZP_04121138.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800225|gb|EEM47153.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 225 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ ++ + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHRTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|319405330|emb|CBI78948.1| two-component response regulator [Bartonella sp. AR 15-3] Length = 228 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G L + +D +++D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYALAETVNYDVMVIDRMLPYRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ R++ Sbjct: 61 SIVTELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ + I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRRDKNIMLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPEK 226 >gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 229 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+A + L+ +F V + + G+ G+E EFD IILDL L + GFE Sbjct: 3 RILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 VCKHIR-EKKDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L ++ A+ V V T KE+ ++ L+ N TKE Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RKIWNMDSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228 >gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 226 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRILL+EDDK +A I L+ V D G DG+ + FDAI+LD L I G Sbjct: 1 MRILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 +L LR ++TPV LS +S ++++V+GL++G DDY+SKPF EL+AR+ A R Sbjct: 61 LRLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRG 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V DL ++L ++ V+ G +I L +E++++E L + +T+ M L + Sbjct: 121 KTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV + +LR+K+ + + I TV GY+LR + Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKV-DKPFTVSLIHTVRNAGYMLRADG 226 >gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 221 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 122/223 (54%), Gaps = 9/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++N+ V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R P+ +L+G+ + E++++G + G DDYI+KPF+ + R+ A++RR Sbjct: 63 ICKIIRGQ-SDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRRAAS 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ +L +N A V G ++ LT KE+++I L + L++ LN + Sbjct: 122 TEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V++ID I LRKKL YI+TV G GY + Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----CIPYIKTVKGIGYKI 219 >gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 240 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ +A+ + L ++ FNV D + + DA+ILD+ L + G+ + Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR +R PV L+ S+EDK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 76 LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V D+ +N + V G + L+ E+ ++ + L+K L H+ Sbjct: 136 DGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILEHV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ +++ ++ LR+K+ G K ++T+ G GYVLRE Sbjct: 196 WHYDFGGDMNVVESYVSYLRRKI--DTGEKKMLQTLRGVGYVLREP 239 >gi|163849055|ref|YP_001637099.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527023|ref|YP_002571494.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670344|gb|ABY36710.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450902|gb|ACM55168.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK LA IE +L E V V GE G++L +D I+D L G Sbjct: 1 MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA R A++ T + +L+ IEDKV G +SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SLCRAARAARLPTALLLLTARGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFH 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + G + ++L T R+ LT E++++E L TLT++ L+++ Sbjct: 121 PNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLLEYLMRNVGQTLTRQQILDYV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +++DV+I LR+KL NA+G + I T+ G GY L Sbjct: 181 WSFEHDVQPQMVDVYISYLRRKL-NASGETDPINTIRGIGYRLEAE 225 >gi|328461774|gb|EGF34010.1| response regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 MRIL++EDD ++A + + K E + + G + +++ K ++D I LDL L Sbjct: 1 MRILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 61 GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 120 Query: 119 SRG----------HAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNT 167 + + I T L ++ D + V + LT KE+ ++ ++ + Sbjct: 121 VMMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L+ ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 181 VFSRDQLLDLVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 235 >gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7] gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7] Length = 239 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V E L + F ++LDL L G Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDYI KPFN EL+ARI+AI+RR Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +LI G ++NL + + I LT E+ +++ L L+++ Sbjct: 127 EVPGAPAAEENLIAFGKFTLNLATREMSEGDKTISLTSGEFAVLKALVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + A YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIEIDAANPRYIQTVWGLGYVFVPDGE 238 >gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134] gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134] Length = 229 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G DG+ + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + + PV L+ ++D+++GL+ GADDY+ KPF ELV RIR I+RR Sbjct: 61 SVLRELRRERDT-PVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++ + V G +I LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 LRESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV I +LR K+ + I T G GYVL + Sbjct: 180 VNFDSNTNVVDVSIRRLRAKV-DDPFDHKLIHTRRGMGYVLDD 221 >gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] Length = 241 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 111/235 (47%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + I L S N +V E ++ + + I+LD+ L + G Sbjct: 5 KILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINLPQMDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R ++ +T V +L+ +SS D+V GL+ GADDYI KPF EL AR++ +R Sbjct: 65 LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124 Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 ++ + G L++ + V + ++LT E+ ++ + N Sbjct: 125 LLAGQNNDNSPADSEQTLNVGSLNIEFSSHQVYLGKQALNLTATEFDLLVYFARHPNHVF 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L+ ++ + ++ I +LR KL IETVWG GY L + Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLEEHQQAP-IIETVWGVGYKLNPS 238 >gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 117/238 (49%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD+A+ + L+L++E F G +E+ + D I+LD+ L + G V Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + P+ +L+ S D V GL++GADDY+ KPF EL+ARI A R ++ Sbjct: 64 ARRIR-ATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKPA 122 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + G + ++ T G ++LT E++++ +L+ Sbjct: 123 AEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ L +++ + + ++++V + +LR K+ + ++TV G GY + Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240 >gi|171912348|ref|ZP_02927818.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 231 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L IED L ++ L V E+G +L + +DA+ILD+ L G Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R ++ TPV +L+ + S+ED+VRGL +GADDY+ KPF EL AR+ A+VRR Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S I G L ++ A+TV G+ + LT +E+ +++ L+ ++E LY Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D P +D + LR+KLS G I T G GY+L Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSP-PGVPQLIHTRRGLGYLL 220 >gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 249 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E +++ G I + D ++LD+ L D+ G Sbjct: 24 IRVLVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDVMLPDMSGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR P+ +L+ S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR+ Sbjct: 84 DVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTG 143 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ IV GDL ++ D+ V G I LT E++++ + L+K L+ Sbjct: 144 VTSEDGGAKIVVGDLVLDEDSHEVTRGGDPIALTATEFELLRFMMRNAKRVLSKAQILDR 203 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ I+++++ LRKK+ +G + I T+ G GYVLR Sbjct: 204 VWSYDFGGRSNIVELYVSYLRKKI--DSGREPMIHTLRGAGYVLRPP 248 >gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 227 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ LA + ML E++ + V GE+G++L ++ I+D L G Sbjct: 1 MRLLIIEDDQRLARLMRRMLAEEHYTIDVAHDGEEGLDLALQGVYEIAIVDWMLPSRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA+R A+ + +L+ +ED+V+GL SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 TICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRFT 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G++ ++L + T + LT E+ ++E L +L+++ L+++ Sbjct: 121 PSGSDTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQILDYV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++ ++DV+I LR+KL NA G + I TV G GY L + Sbjct: 181 WSYERDVQIALVDVYISYLRRKL-NAPGESDPIMTVRGVGYRLEAS 225 >gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 230 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K++A ++ K E + V GE+ +E + D +ILD+ + + G+E Sbjct: 4 RILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMPKLTGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + + +L+ + I DKV GL+ GADDY++KPF+ ELVAR +A+VRR Sbjct: 64 VCRKLENRRGMGII-LLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I G + VNL +T+ V + LT KE+ +I LL T+E L+ Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANDLVKLTPKEFDLIALLLANLERVYTREDLLDL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + +D+ + +LRKK+ A ++TV+G GY Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEA--EPYLLQTVYGVGYK 223 >gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656] gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656] Length = 257 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+K + + L + + V G++ +E +D I+LDL L + G E Sbjct: 33 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 93 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFV 152 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G++ + + +G + LT KE ++E L + +++E + H++D Sbjct: 153 QNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVWDA 212 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LRKKL G + I G GY +RE + Sbjct: 213 TADSFSGAIRVHMSSLRKKLKAELGY-DPILNKVGEGYKIREES 255 >gi|86360536|ref|YP_472424.1| two-component response regulator [Rhizobium etli CFN 42] gi|86284638|gb|ABC93697.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CFN 42] Length = 230 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V E + D ++LDLGL D PG + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVREAPNAESARQSVADDMPDLVVLDLGLPDTPGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G + L+ KEY ++ +L LT + L ++ Sbjct: 127 QQGERAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLVQHAGKVLTHQFLLKQVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V+I ++R+K+ +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYIRQIRQKVEKIPDQPHYITTETGVGYRLREP 229 >gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] Length = 223 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD A +++ LK + G+ G++ K D IILD + + G Sbjct: 1 MKVLIVEDDNEAATNMQRGLKEAGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPVMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +L+ LR PV LS + +ED+V GL++GADDY+ KP+ ELVAR+ A R+ Sbjct: 61 TMLQQLRSEGTDVPVLFLSALGELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKD 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ GDL +NL ++ V+ Q I L +E+Q++E L ++T+ M L ++ Sbjct: 121 KDAVDTVLRVGDLEMNLISRVVKRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P+ +IDV I +LR KL + TV G GY L+ Sbjct: 181 AYHFDPQTNVIDVHISRLRSKLDKDFDRP-MLHTVRGEGYQLK 222 >gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 232 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I+KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V V + LT K ++++ +L+ + +K Sbjct: 121 LSRGGETEQIELGDLVINHVTHEVRVGEQSLELTVKSFELLWILASNPDRVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222 ++ + ++V I LR++LS I+TVWG GY L Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELSKYTNLNTPAIKTVWGLGYKLE 226 >gi|212696240|ref|ZP_03304368.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM 7454] gi|212676869|gb|EEB36476.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM 7454] Length = 231 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ + +++ L+ F++ GE+ +++ + ILD+ L I G+E Sbjct: 4 KILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGISGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + ++S S DK+ GL+ G DDYI KPFN +EL+ R+R+++RR Sbjct: 64 VCDTIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLRRVNF 123 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G ++L A+ I +T E+ +++ L K +++ Sbjct: 124 TEDEKKEKNDNVIEDGIFKLDLYARNFYKNNKEIDVTPTEFIILKNFILNKGKAMSRMEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ YIETVWG GY R Sbjct: 184 MKDTWGDNYSTDTKIVDVNIRRIRAKIEENPAKPEYIETVWGTGYRWR 231 >gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 273 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249 >gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + L+ E V G + +E + D ++LD+ + + GFE Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + PV IL+ ED+VRGL+ GADDY+ KPF++ EL++RIRA++RR Sbjct: 69 LRRIR-SFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQ 127 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LS++ + V V G R++L EY+++ L LT EM L+ + Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + ++I LR+K+ YI T G GY + Sbjct: 188 WGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFVD 232 >gi|116255578|ref|YP_771411.1| putative Kdp operon transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260226|emb|CAK03330.1| putative Kdp operon transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 230 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L ++ + V + D I+LDLGL D PG + Sbjct: 7 KILVVDDEPPIRKLLRVGLTAQGYEVQEAPNASAARQSVTDDMPDLIVLDLGLPDTPGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR R Sbjct: 67 LLQEWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ TG LS++L + V+V G+ I L+ KEY ++ +L+ LT + L ++ Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGNEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQIW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + V++ +LR+K+ +YI T G GY LRE Sbjct: 187 GPAADVQ--YLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLREP 229 >gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 220 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+IED+K ++ ++L L + GE G++ E++ I+LDL L I Sbjct: 2 MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV R LR TPV +L+ + DKV GLQ GADDY++KPF EEL+ARI A++RR Sbjct: 62 GIEVCRRLR-EIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 120 Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G++ ++ V + + ++LT E+ ++ LL +++ L+ Sbjct: 121 MNFQKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ +++V+I LR K+ G K IETV G GY L Sbjct: 181 VWGYDEDVSTNVVEVYIRYLRNKI---PGIK--IETVRGVGYRL 219 >gi|229917890|ref|YP_002886536.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469319|gb|ACQ71091.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL EDD+ L + L + V GE+ ++ D +I D+ + + G E+ Sbjct: 4 ILLAEDDETLGGLLVDYLTVAGYRVLHAKDGEEALDWLDREPIDLLITDVMMPRLDGREL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR A + PV +L+ + ++ DK RG +GADDY+ KP + EEL RI A++RR+R H Sbjct: 64 TGQLRDAGYTLPVLMLTVLDAMNDKKRGFHAGADDYVVKPIDLEELELRIEALLRRARIH 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I D ++ T+E I L KE++++ L+ N T++ L+ ++ Sbjct: 124 HSHQIQLNDCVLDETTMTLETTSETIELPRKEFELLYFLATHLNQVFTRQQLLDRIWGYE 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E + +DV I +LR +L + I TVWG GY L Sbjct: 184 TESETRTVDVHINRLRARLKPIDAFQ--ISTVWGLGYRLE 221 >gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 234 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDD+ LA + L+ V ++ GE G++ + FDAI+LDL L G Sbjct: 6 INILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPARDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R P+ +++ D+V GL+ GADDY+ KPF+ EL+ARIRA+VRR+R Sbjct: 66 SVCQRIR-EHSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRAR 124 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A +V GDL ++ A T + G + LT E+ +++ L+ R L++E + Sbjct: 125 GQAGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMEL 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E + IDV I +LR+K+ + I TV G GY Sbjct: 185 AKGNAEEAFDRSIDVHISRLRQKIGDDPRHPTRIRTVRGAGY 226 >gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] Length = 232 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED++ + I LK N+ + T G + IEL +FD +I+D L + G E Sbjct: 10 KILLIEDEENIRKIIAYDLKKANYEIVETGDGREAIELAGSNDFDVLIIDWMLPHVSGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR K + + +L+ D + + G DDYI+KPF+ EL+AR+ A ++R +G Sbjct: 70 IVERLRERKNDSIMIMLTARDDETDILHAFEKGVDDYITKPFSPRELLARVNAHLKRRKG 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V GD+ ++L +++ ++ + LT KE+ ++E K L+++ LN ++ Sbjct: 130 REEPRLVFGDICMDLKRRSILLKEQELELTKKEFDLLEYFISNKEVVLSRDNILNEIWGF 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +I+DV + KLR KL+N+ I+++ G GYV+ E ++ Sbjct: 190 DYDGDTRIVDVHVFKLRSKLANSNIQ---IKSMRGIGYVIEEKHEE 232 >gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC 3083-94] gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC 3083-94] Length = 219 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218] Length = 240 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 222 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ F V G + ++ A +LDLGL G Sbjct: 1 MRILLAEDDSMLGDGLRAGLRQMGFQVDWVRDGVAAERELRAVDYVAAVLDLGLPGKDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ALR A+ +TPV +L+ ++ D++RGL +GADDY+ KP + EL AR+R++VRRS Sbjct: 61 EVLQALRAARNTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDLHELAARLRSLVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ ++ G LS++ A+ V + L+ +E+ ++ L L++E +Y Sbjct: 121 GVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSAGRVLSREQLEQQMYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E I+V I LR+KL I+TV G GY+L A Sbjct: 181 WGLEVESNTIEVHIHHLRRKLQAD-----VIQTVRGVGYMLNPKA 220 >gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 226 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 1 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 61 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQPVP-LLKTVRGLGYRL 222 >gi|229134079|ref|ZP_04262899.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649414|gb|EEL05429.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLNADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|158423193|ref|YP_001524485.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158330082|dbj|BAF87567.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ A+ + L + + V D + + DA++LDLGL D+ G Sbjct: 4 IRILVVDDEPAIHRFLSPALTAAGYGVARADDAAGALRAIATHPPDAVLLDLGLPDMDGK 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ +R P+ +LS +K+ L GADD+++KPF EL+ARIRA +R+ Sbjct: 64 EVIGRVR-QFSQVPIIVLSARDREAEKIEALDLGADDFVNKPFGVGELMARIRAALRQRG 122 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + G L ++ V G I LT KE++++ L+ LT L Sbjct: 123 GDTHAADVVLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + + V++ +LR++L I T G GY + E Sbjct: 183 VWGPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYRMAE 228 >gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [uncultured Desulfobacterium sp.] Length = 242 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D++ + I L S+ + V GE+ ++L FD I+LDL L I G Sbjct: 15 IRILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGGI 74 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +V + LR I+ P+ +L+ S E + + ADDY++KPF+ + L ARI AI+RR Sbjct: 75 DVAKRLRSVHNTINIPIIMLTAKS-EETDIISGLTLADDYVTKPFSPKILSARISAILRR 133 Query: 119 SRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +I GD+ ++ + VEV G + L+ E+Q++ +LS R ++ Sbjct: 134 INDSSDDASDDKIIKRGDIVIHTGRRRVEVCGEPVELSFSEFQILIMLSKRPGWVFSRSQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ + +DV I LRKKL + YIETV GY +E Sbjct: 194 IVDTVHGEDYPVTDRSVDVQIVGLRKKLGSCG---RYIETVRSVGYRFKE 240 >gi|320107430|ref|YP_004183020.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925951|gb|ADV83026.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 224 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ +A+ ++ L + +V+V+ G+DG+EL + FD ++LD+ L GF Sbjct: 1 MKLLIIEDDRRIANLLQQGLSEDGHSVFVSHRGDDGLELIQSQYFDMVVLDIMLPGRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R A+ + P+ IL+ + D VRGL GADDY++KPF E L+AR+RA+ RR + Sbjct: 61 SILKQARHARYAMPILILTARDGMADIVRGLDLGADDYLTKPFQLEILLARVRAMGRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ K + I LT KE+ ++ELL R +++ + + Sbjct: 121 VPLLDQLRVGDLILDRSQKLLLRGDLEIPLTRKEFVLLELLMRRPQQVISRNELIEVGWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +D +I LR K++ G + I TV +GY L Sbjct: 181 YDAEVSDNSVDFYIHSLRSKINVD-GQPSMIRTVRAQGYAL 220 >gi|258516238|ref|YP_003192460.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779943|gb|ACV63837.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 232 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++I++ +D++ + +++ L+ E + V GED ++ + +D ++LDL + + G Sbjct: 4 IKIMVADDEERIRRLVKMYLEKEGYEVGQAINGEDVLKQLGQDASWDLLLLDLMMPETDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA----I 115 ++V R LR P+ +L+ D+V GL+ GADDY+ KPF+ ELVARI+A + Sbjct: 64 WQVCRELRKKSDI-PIIMLTARGDEIDRVLGLELGADDYVLKPFSPRELVARIKALLRRV 122 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R+ + + L+++ ++ V + G + LT KE+ ++ +S ++E L Sbjct: 123 RRKQVYGDEVQLQFSGLTIDPASRKVILMGQVLSLTPKEFDLLLFMSQSAGQVFSREQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + + +D I +LR KL+ YI TVWG GY Sbjct: 183 RNIWNYDYFGDPRTVDTHINRLRDKLTKIKDAPQYIHTVWGVGYKFE 229 >gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +IE+ L E + + G + +E+ + E ++LD+ + + G Sbjct: 4 ILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEVHLLLLDVMMPKLDGIRA 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R K S P+ ILS S DK+ GL GADDY++KPF+ ELVAR+++ +RR Sbjct: 64 TLKIR-EKNSIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRRYTQL 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L +N D K V V G + LT EY ++ LL + + Sbjct: 123 GGTAQNENDKIYSVGGLRINDDLKEVTVDGELVRLTPIEYNILLLLMKNQGRVFSINQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 183 EMIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230 >gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14] gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14] Length = 225 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD I L+ F V + G G+ + E+ IILD L + G Sbjct: 1 MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL ALR + TP+ ILS M S+ED+V GL +G+DDY++KPF EL+AR +V+R + Sbjct: 61 KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQ 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S DL +++ + V ++L KE+ +++ L + +++ + Sbjct: 121 SSVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I LRKKL G + I TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223 >gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 248 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + V G DG+ L + IILD+ L + G+ Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR A PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 83 QVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 142 PVFTRLTINGLD-MDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVQGMGYRLQAE 243 >gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 221 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 63 ICKIMRGQSDV-PIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +V++ID I LRKKL YI+TV G GY + Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----TYIKTVKGIGYKIE 220 >gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D++ + + L E + V GE+ + + I+LDL L + G E Sbjct: 5 HILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLMLPGVDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ P+ +LS D V GL+ GA DY++KPF+ L+AR+RA++RR Sbjct: 65 VCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLIARLRAVLRRR 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DL ++ V +QG ++ LT E++++ +L+ R T+ +N Sbjct: 125 SAEPLSESAPLTIHDLVIHPGRHEVLIQGQQVDLTVTEFRLLHMLARRPGWVFTRSQIVN 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +DV + LRKKL +YIETV G GY +E Sbjct: 185 TVHGDDYPVSDRSVDVQVVGLRKKLGALG---DYIETVRGVGYRFKE 228 >gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 236 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 15/234 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + +I++ LK++ + V++ + G++G+ + K + ++D+ + + G + Sbjct: 5 ILVVEDEKGIREAIQIYLKNQGYRVFLAENGQEGLNIIKRETINLAVVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ LS S DK+ GL GADDYI+KPF EL+AR+R+ +RR Sbjct: 65 TMEVRKD-YDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQI 123 Query: 123 AQSLIV-------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 G L +N K V V + L KE+ ++ELL Sbjct: 124 LMLKEHAVSSVNREEEIYSIGALELNSTTKEVRVDNQIVKLRPKEFMILELLMKHAGRVF 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ + + V I KLR+K+ Y++ VWG GY + + Sbjct: 184 SAQQIYEAVWNEEA-INTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236 >gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus GG] Length = 266 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 12/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ + ++L L+ E + + G+ ++ K FD ++LD+ L + GF Sbjct: 36 KILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEKNGFN 95 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR TPV I++ +D+V GL GADDY+ KPF+ L ARI+A +RR+ Sbjct: 96 VLKELR-QTKMTPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154 Query: 122 HAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +A + +TV R++LT KEY++++LL + +K+ Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + ++V I +LR K+ + + YI TVWG GYVL + Sbjct: 215 AIYEKVWGESYIGDENTVNVCIKRLRDKIQDV--NQRYIRTVWGIGYVLEAGVE 266 >gi|15891165|ref|NP_356837.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15159516|gb|AAK89622.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L ++ + V + +EL + + D ++LDLGL D+ G + Sbjct: 7 RILIVDDEPPIRKLLRVGLSTQGYAVSEAMNAKVAMELVREDKPDLVVLDLGLPDVSGHD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 +L R ++ PV ILS + VR L+ GADDYISKPF ELVARIR R Sbjct: 67 LLEKWRSDGLALPVIILSSRTDEAGIVRALELGADDYISKPFGMNELVARIRVALRHRLQ 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + TGDLSV+L + V+V+ + L+ KEY ++ +L LT L H++ Sbjct: 127 TQGEKPVFQTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + + V++ +LR+K+ YI T G GY L+E Sbjct: 187 DELTDVQ--YLRVYVRQLRQKIEKLPDQPRYILTETGVGYRLQE 228 >gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ] gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ] Length = 232 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 3/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L + + V G +G+ L D ++LDLGL D+ G E+ Sbjct: 8 ILVIDDEAQIRKFLRISLVAHGYRVLEAGCGREGLTLAAEARPDLLVLDLGLPDMDGKEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 L LR PV +LS + +KV L GA+DY++KPF+ EL+AR+R ++RR Sbjct: 68 LAELR-RDSQVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPASP 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L+V+LD + V++ G I LT KEY ++ +L+ +T++ L ++ Sbjct: 127 GQGPGTLNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + V + LR+KL + +I T G GY LRE A Sbjct: 187 PTHVEDSHYLRVVVGHLRQKLGDDPADPRFIVTEAGIGYRLREQAP 232 >gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119] gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119] gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] Length = 219 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L + + V + GE G+E +FD IILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R STP+ I++ S DKV GL GADDYI KPF EEL ARIRA++RR Sbjct: 64 CRRVR-QVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQPHK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I + +++DA V V G ++ T EY ++ LL+ +N L +E LNH++ Sbjct: 123 DIIDING--IRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL + IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKP-FNKEKVIETVRGVGYVIR 219 >gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + IILDL + ++ G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS ++ DK++GL SGADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVIKQVRKDSDI-PILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L++N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G+ I+TV G GY + ++ Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGYKVEDH 229 >gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium freudenreichii subsp. shermanii] gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 242 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L ++D+ +L + + ++ E + G D + + DAI+LD+ L D G Sbjct: 18 IRVLAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+R +R + PV L+ ++ D++ GL +G DDY++KPF+ EEL+AR+R+++RR Sbjct: 78 EVMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSG 137 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++S ++ GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 138 ATSKRSESELIVGDLVLDEDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 198 VWNYDFGGQANVVELYISYLRKKI--DAGREPMIHTMRGAGYVLKP 241 >gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 222 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 112/220 (50%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA ++ L+ E + + G+ +E + D I+LDL L + G V Sbjct: 6 ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLMLPGLDGLSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R R P+ +++ D++ GL+ GADDY+ KPF+ E+VAR++AI+RR RG Sbjct: 66 CREAR-RFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVRGA 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ ++G + LT E+Q++++L+ ++ ++ +Y Sbjct: 125 PVEERAL---MLDPSRYRAVLRGKPLELTAIEFQLLKILADEPGRIFSRSQLMDGIYQDH 181 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I KLRKK++ ++YI +V+G GY Sbjct: 182 RIVSDRTVDSHIKKLRKKMTELFPDQDYIHSVYGLGYKYE 221 >gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980] gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + G++ + + D +ILD+ + ++ G Sbjct: 1 MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++++RR+ Sbjct: 61 MQVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] Length = 244 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 19/236 (8%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + + L L+SE + V G + + K D ++LD+ + I G++V Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + PV ++S DK+ GL GADDY++KPFN E +AR+R+ +RR+ G Sbjct: 71 LRRVR-ETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129 Query: 123 AQSLIVTGDL----------------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 +++LDA + + LT E++M+ L Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPG 189 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 TK+ + + V I KLR KLS+ G YI TV G GY + Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRME 243 >gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] Length = 311 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 15/231 (6%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 M+ IL+ +D+K + + L+L E + V + G++ + + E D +LD+ + Sbjct: 80 MKNGKICILIADDEKEIRDILRLLLTGEGYAVCTAENGKEAL-VLASAEVDLYLLDVNMP 138 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 ++ GF +R + P+ L+ S DKV G +GADDYI KPF+ EL+ R++AI Sbjct: 139 ELSGFMAGSEIRKQFNA-PIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAI 197 Query: 116 VR-------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 +R ++ +S I GDL ++L+ ++V QG I LT E++++ELL K Sbjct: 198 LRRSARGTAPAQEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKI 257 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E +++ + I V I +RKKL + + YI+T WGRGY Sbjct: 258 YSLENIYQSIWEEDAVGDS-AIMVHIKNIRKKLEDDSRNPRYIKTAWGRGY 307 >gi|148654779|ref|YP_001274984.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566889|gb|ABQ89034.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 227 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD+ LA I +L+ E++ V + G+ G+E + I+D L + G Sbjct: 1 MKVLLIEDDQRLARLIARVLRDEHYQVDMVHDGDTGLEYALRGVYQVAIIDWMLPERDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + RA+R A++ T + +L+ +EDK+ G SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SICRAVRAARLPTALLLLTARGQVEDKIVGFDSGADDYLVKPFAFEELLARVRALGRRFS 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + GDL ++L T + LT E+ ++E L L+++ L+H+ Sbjct: 121 LQPDDSNELRVGDLVLDLRHHTARRGTRPLDLTPTEWNLLEYLMRNAGQALSRQQILDHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +++DV+I LR+KL NA+G ++ I TV G GY L + Sbjct: 181 WSYDHDVQPQMVDVYIAYLRRKL-NASGERDPIVTVRGVGYRLEAS 225 >gi|33598501|ref|NP_886144.1| two-component response regulator [Bordetella parapertussis 12822] gi|33603445|ref|NP_891005.1| two-component response regulator [Bordetella bronchiseptica RB50] gi|33574630|emb|CAE39281.1| two-component response regulator [Bordetella parapertussis] gi|33577569|emb|CAE34834.1| two-component response regulator [Bordetella bronchiseptica RB50] Length = 225 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA + L ++ V V G +G L +++ +ILD+ L DI GF Sbjct: 1 MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR A +TPV +L+ +ED+VRGL+ GADDY+ KPF EL+AR+ A+ RR R Sbjct: 61 AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L ++ + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV I +LR KL + + TV G GYVL Sbjct: 181 MNFDSDTNVIDVAIRRLRGKL-DDPYDAKLLHTVRGMGYVLE 221 >gi|322389821|ref|ZP_08063363.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143481|gb|EFX38917.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 217 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + + L + V+ G++ + L D ++LD+ L + G Sbjct: 1 MKILIVEDEVLIREGMSDYLMECGYEVFEAGDGQEALYLFHREAPDLVLLDIQLPILNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R S PV +L+ + K+ AD Y+ KPF+ L RI AI ++ Sbjct: 61 EVLKTIR-KTSSVPVLMLTAFHDEDYKLTAFGEMADGYLEKPFSLSLLKVRIEAIFKK-- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ V+ ++ T + G I + KE +++E L + T+ L+ ++ Sbjct: 118 LQPSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E P ++IDV+I +LRKKL I TV GY L Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLELD-----CIVTVRNVGYKLE 215 >gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143] Length = 232 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWILASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 ++ + ++V I LR++L+ I+TVWG GY + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKHTNSNAPAIKTVWGLGYKME 226 >gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 224 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ ++ + LK+ + V G +++ + D +ILDLGL DI G V Sbjct: 4 VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 L LR ++PV +LS +DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 64 LSKLR-EFCASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRRTGLV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + +VT VN +A+TV G + LT E++++++L + ++++ L+ ++ Sbjct: 123 DAPAPVVTDAFEVNFEARTVTRDGKPVRLTPTEWKIVDVLVRNADRLVSQQTLLHEVWGP 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + V++ +LR+KL Y T G GY Sbjct: 183 SYSRETNYLRVYLAQLRRKLEPDPAHPRYFVTEPGMGYRFIP 224 >gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199] gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199] Length = 246 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED+ + + L+ E F V GE+ + + + D I+LD L + Sbjct: 15 MKPLILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPLLS 74 Query: 59 GFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G EV R LR + P+ +L+ D++RGL SGADDY++KPF+ EL+AR+RA++ Sbjct: 75 GIEVCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELIARVRAVL 134 Query: 117 RRSRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+R + + GDL ++L A V+ IHL E++++ ++E L Sbjct: 135 RRARPSTEDEMLHYGDLHMDLAAHRVKRSERDIHLGPTEFRLLRHFLEHPGRVFSREQLL 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ E + +DV I +LRK L NA + I TV GY L Sbjct: 195 DTVWGPDVYVEPRTVDVHIRRLRKAL-NAEQDDDVIRTVRSAGYAL 239 >gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 236 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E IIDV++ LRKK+ ++ I TV G GYVLR + Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVGGTGYVLRVES 236 >gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + + ML + G +G+ + ++D +ILDL L G Sbjct: 5 KILVVEDDREINSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDYDLLILDLMLPYKSGDA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ LR + S PV ++S ++++K+ GADDY++KPF+ +E++ R+ A++RR Sbjct: 65 VLQELR-SFSSLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRRCGS 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ G L+V+ ++KT V G + LT KEY ++ELL + +K Sbjct: 124 SEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANLFES 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ E ++V + LR KL A YI+TVWG GY + Sbjct: 184 IWNEEYACEDNTLNVHMSNLRNKLKAADPETEYIKTVWGMGYRM 227 >gi|332654910|ref|ZP_08420652.1| DNA-binding response regulator MtrA [Ruminococcaceae bacterium D16] gi|332516253|gb|EGJ45861.1| DNA-binding response regulator MtrA [Ruminococcaceae bacterium D16] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 106/224 (47%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD A+ +E +++S + + GE ++ + FD I+LD+ L D+ GFEV Sbjct: 5 VLIVDDDPAICKLLEKVMRSNDMDSQAVGSGEQALQALETRTFDIILLDVNLGDMEGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 LR LR I TPV I+SG + D + GL GADDY++KPF L A+++A R Sbjct: 65 LRRLRERGIKTPVIIISGRNEDYDSLYGLSLGADDYVTKPFRPVVLGAKVKALLRRSREF 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G + + L+ +E ++ L N TK+M ++ Sbjct: 125 SSAASQQLRCGPFRYDGATMRFFKGEEVLDLSSREGALLLLFLQHPNQVFTKDMLYERVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V+I +LR K+ +I TV G GY Sbjct: 185 GTAVAVDDNAIMVYINRLRGKIEPDRQHPVHIRTVRGLGYRFVP 228 >gi|282897775|ref|ZP_06305774.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281197454|gb|EFA72351.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 259 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 114/234 (48%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD ++ + + L + + G+ + L + + +ILD L DI G++ Sbjct: 31 KIMVVDDDFSVRNLVHRFLSRK-YKTETAADGKSAMTLFEQFNPSLVILDWNLPDINGYK 89 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118 + + ++ V +L+ + DK++ L GADD+++KPF+ E+ R+ A +R Sbjct: 90 LCQDMQNRTNVL-VLMLTSRNDETDKIKVLTGGADDFMTKPFSLVEVEVRVNALLRRIRY 148 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ L++N + + V + + LT E+ ++ L+ ++ + + Sbjct: 149 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 208 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 + + +++DV I +LRKK+ + +I+TV G GY E+ E+ Sbjct: 209 WGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKF------ESPEH 256 >gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 236 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++EDD ++A +++ E ++V + G + +E+ K +D + LDL L G Sbjct: 3 KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKKAPDSYDIVTLDLNLPKKDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ RRS Sbjct: 63 MEVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122 Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170 G L ++ D + V + LT KE+ ++ ++ + + Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +D I KLR+KL A G ++TVWG GY ++ Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDSE 235 >gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 241 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + L +E + G++ + + + + +ILD+ + ++ G Sbjct: 13 MKILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMDG 72 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK+RGL +GADDY++KPFN E++AR+++++RR+ Sbjct: 73 MQVVKELRKESQI-PIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 131 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A S L +N D+ V V G+ I LT E+ ++ LL+ N + + Sbjct: 132 KMQAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEI 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 192 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKI 238 >gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3 str. Ether] gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether] gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether] Length = 239 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRRLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G + G L ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 129 DGTAKPAGQQAKPLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238 >gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittHH] gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittHH] Length = 231 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ I L L + ++V + I K I+LD L G + Sbjct: 4 KILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + P+ +L+ S+ ED + L +GADDYI+KPF+ + L+ARI A+ RR Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I +LS++ +A+ V Q I+L+ E++++ ++E LN ++ Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E + +D +I +LR+ L+ ++YI+TV G GY Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAP-FQCEDYIQTVRGSGYRF 223 >gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ ++ +++ L+ ++V G + + + + D ++LD+ L + G+ + Sbjct: 4 ILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEKNGWTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R + + PV +L+ + + ++ G GADDYI KPF +E+VAR+RA++RR+ G Sbjct: 64 LKEIR-ERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAVGS 122 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++ A V + G I LT ++ ++ L+ N T T++ ++ ++ Sbjct: 123 PDSATSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +D+ I +LRK L + I+T+ G GY L Sbjct: 183 WEYEGSDRAVDLAIKRLRKALKEWDEAEGEIKTLRGLGYQL 223 >gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++A+A + L+ F V + + G+ G+E E+D IILDL L ++ GF+ Sbjct: 3 KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVRQEKNI-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I + ++ A+ + V G T KE+ ++ L+ N TK Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 224 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + E + V + G +EL K +FD II+D+ + + GF Sbjct: 3 RLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIMMPRLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ + PV +LS DK+ G + G DDY+ KPF+ +EL+AR++A+++RS Sbjct: 63 ACKEIK-KYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKRSEH 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L +++ + V V G R+ +T KEY ++ L N LT++ L + Sbjct: 122 AAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNIALTRDKLLEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +D I LR L + +I T+ G GY Sbjct: 182 WGYDFFGDDRTVDTHIKMLRNSLGEY---RKFIVTLRGMGYKFE 222 >gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator [uncultured prokaryote AT5] Length = 234 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 6/228 (2%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL++ED++AL + L++E + V G++ L K D +ILD L + Sbjct: 2 MKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGLS 61 Query: 59 GFEVLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI- 115 G E+ R R P+ +L+ ++VRGL +GADDYI KPF+ EL AR+RA+ Sbjct: 62 GIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALL 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R ++ GDL V+ + K V G + L EY+++E L R ++E L Sbjct: 122 RRALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ + + + +DV + +LRK L+ + I TV G GY L + Sbjct: 182 NGVWGSQIYIDERTVDVHVGRLRKALNR-GHETDPIRTVRGAGYALDD 228 >gi|326204574|ref|ZP_08194431.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985367|gb|EGD46206.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDDK + I + LK V + + L F+ I+LD+ L D G E Sbjct: 3 RILIVEDDKLINDGISIALKKGGHMVLSGFSYNEALCLFLNNSFELILLDINLPDRSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ ++ + +D V G G DDYI+KPF+ E + RI A++RR+ Sbjct: 63 LCNEIRKKSDI-PIIFITANDTEQDIVNGFVIGCDDYIAKPFSLEVMNRRIHAVLRRTTP 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +G++S+N D V + I LT EY+++ LL+ LT+++ L L+D Sbjct: 122 EDKNTFRSGEISINYDKMVVSKREVLIKLTATEYKLLALLTQNSGQVLTRDIILQRLWDT 181 Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + V + +LR+K+ + YI+TV+G GY E + Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGYTWGEES 226 >gi|269124222|ref|YP_003306799.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] gi|268315548|gb|ACZ01922.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] Length = 225 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ L + I+ LK+ + V GE+ + +D +ILD+ L + GF Sbjct: 1 MKILLVEDEIDLNNIIKKYLKTSGYIVDSVFDGEEALFNLNEASYDLVILDVMLPKLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R V +L+ +EDK++GL GADDY+SKPF+ EEL ARIRAI+RR Sbjct: 61 EVLEKMRKKNNKAAVLMLTSKDQVEDKIKGLDLGADDYLSKPFDFEELAARIRAIIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S I DL ++ KTV I LTGKEY+++E L K ++++ +H+YD Sbjct: 121 DNLSSEIKIHDLILDTMKKTVIRNNVNIDLTGKEYEILEYLMQNKERIVSRDQIKDHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +IDV I +RKK+ + G K I T G GYV++EN Sbjct: 181 FYYEGSSNVIDVLIKNIRKKI-DLEGSKQIIFTKKGLGYVVKENE 224 >gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ L+ + L + F G + + D I+LDL L G ++ Sbjct: 10 VLVVEDEPKLSRLLADYLAAAGFETACLADGLAVVPEVRRRLPDLILLDLMLPGRDGLDI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A P+ +++ D++ GL+ GADDYI KP++ E+VAR++AI+RRS+ H Sbjct: 70 CRELR-AFSDVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARVKAILRRSQRH 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 G +++ + QG R+ LT E++++ L+ +++ L+HLY Sbjct: 129 GALPADAGL-TIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQLLDHLYADH 187 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL AA + I +V+G GY L Sbjct: 188 RVVTDRTVDSHIKNLRRKLEQAAPQQEMIRSVYGVGYKLE 227 >gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP 105476] gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP 105476] Length = 222 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + ++ + GE+ L +DA+ILD+GL I G Sbjct: 1 MRILIVEDDRNLHHQLAEAVRQAGYVYDSAFDGEEAYFLGSTESYDAVILDIGLPYIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + PV +L+ DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ Sbjct: 61 RVVEKWRQEGHTMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEEVMARLRALIRRTT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G++ ++ V V G I LT E++++ L + +++ HLYD Sbjct: 121 GHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++VF+ +LRKKL IET+ G GY +R Sbjct: 181 QDFDKDSNTVEVFVGRLRKKLGVD-----LIETIRGMGYRVR 217 >gi|110801456|ref|YP_699593.1| two-component response regulator [Clostridium perfringens SM101] gi|110681957|gb|ABG85327.1| two-component response regulator [Clostridium perfringens SM101] Length = 233 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + +E LK E F+V+ GE+ +++ + D I+LDL L D+ G EV Sbjct: 6 ILLVDDEEKIIEVLEAYLKKEGFSVFSCSNGEEALKIFDNNKIDLILLDLMLPDLSGEEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ + ED + G GADDY++KPF+ ++L+ARI+AI+RRS Sbjct: 66 CKVIRAKSCV-PIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTPC 124 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+L +N+D + V V+ I LT E+ ++ LS T++ + Sbjct: 125 PNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIEL 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ++ID I LR K+ +I TV+G GY Sbjct: 185 VLGDKSDSFDRVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFE 229 >gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus] Length = 237 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRRLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVARR 128 Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G L ++ + T +G + LT E+ ++ L+ R +++ + Sbjct: 129 HAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDALM 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 DAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 236 >gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 14/238 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ ++ L+ ++V GE+ + D I+LD+ + + G+ V Sbjct: 11 ILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVMMPKLDGYGV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR P+ +L+ ++ + D++ GL+ GADDY+ KPF+ +EL ARI +++RR Sbjct: 71 CLELRKQ-SDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRRFHK 129 Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G+L ++++ + V RI LTG E+ ++ELL ++ Sbjct: 130 SDINTIIPNSLIIHVGNLKIDVNKRQVHKNEQRIRLTGIEFSLLELLVNHSGRVFSRLEI 189 Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAKD 227 L L+ + +++DV I +L K+ + +I T G GY + E+ ++ Sbjct: 190 LQQLWGFVPGSHTDTRVVDVHISRLLTKVESDPNDPEFIITAKGSGYFFPRIVESEQE 247 >gi|325066517|ref|ZP_08125190.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Actinomyces oris K20] Length = 242 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D+ + S+ L+ + V + G + +++ Y+ D I+ D+ + + G E+ Sbjct: 13 VLLVDDEAPIRRSLGPYLERGGYRVLLASDGVEALDILASYQVDIIVSDVLMPRMDGREL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R TP+ +L+ + + ++V L GADDY+SKPF+ EL +RIRA++RR+RG Sbjct: 73 VRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRRTRGV 132 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 AQ + G L + ++ V + G + LT K +++ L T++ L Sbjct: 133 AQPLTSAARLTAGQLILERTSRRVTLSGREVTLTPKATMLLDYLMSHPGELHTRDALLAS 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + +D I ++R+ L + A YIETV GY R + Sbjct: 193 LWGIDFATSTRAVDHRIREIRQALGDDATHPTYIETVPSVGYRFRAEVR 241 >gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + +L+ F + + I D ++LD L G + Sbjct: 4 KVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + + + P+ +L+ EDK+RGL+ GADDY++KPF+ +EL+ARI+A++RR Sbjct: 64 IAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V G + + E++++ ++E L+H+ Sbjct: 124 APTSLEEAIEVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK ++ G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIATL-GHDRLVQTVRGAGYRF 225 >gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208] Length = 222 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 116/221 (52%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L++E F V G + ++ + + ++D+ + ++ GFE+ Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + PV +L+ ++ DK RG + G DDY++KPF EELV RIRA++RRS Sbjct: 61 CQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSNQA 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ I G+++++ + +++ + KE++++ L+ T+E + ++ Sbjct: 121 SEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQRD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DV I +LR I TV G GY L E Sbjct: 181 YDGSDRTVDVHIKRLRDHFDEE-KDGIRIVTVRGVGYKLEE 220 >gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 225 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD +A IE LK+E + + G+ +E YE D +ILD L G Sbjct: 1 MRILLIEDDPRIASFIERGLKAEGHQIQHLNDGQYAVETVISYEPDLLILDRMLPHCDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R A I + +LS + ++++V+GL++GADDY++KPF+ EEL+AR+ A+ RR Sbjct: 61 TICQQIRSAGIDVRILMLSALGDVDERVKGLRTGADDYLAKPFHFEELLARLDALQRRHS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL + L V I LT KE ++ELL + ++E L +++ Sbjct: 121 ESSPLPTLQVADLVLCLPTMQVTRDNQLIELTAKELSILELLMNKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV++ +LRKK+ + ++T G GY L+ + Sbjct: 181 GMHQDPLTNVVDVYMRRLRKKI-DDPFTAPLLKTKRGMGYYLQAD 224 >gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL L+++ ++VY G++ ++ + D ILD+ L DI GF Sbjct: 1 MNILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 61 QILKQIR-EKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119 Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + +I G L +N + + LT E+ ++ LL + ++ E Sbjct: 120 QYNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEEL 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I LR+K++ G ++I+TVWG GY + E Sbjct: 180 FEKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVEE 229 >gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 236 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++EDD ++A +++ E ++V + G + +E+ K +D + LDL L G Sbjct: 3 KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R IS P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ RRS Sbjct: 63 IEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122 Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170 G L ++ D + V + LT KE+ ++ ++ + + Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +D I KLR+KL A G ++TVWG GY ++ Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDSE 235 >gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469] gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia fergusonii ATCC 35469] gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia fergusonii B253] gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGETPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-SGHDRMVQTVRGTGYRF 225 >gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA ++ L E F V G DG+ L +D IILD L I G Sbjct: 1 MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR TPV +L+ + +ED+VRGLQ+GADDY+ KPF ELVARI A++RR Sbjct: 61 AVLAALR-QSRQTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGL 119 Query: 121 GHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL ++L G R+ LT KE+ ++ LL R+ L++ + Sbjct: 120 QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELAS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + E +++V + +LR KL +A + + TV G GYVL Sbjct: 180 QVWDMNFDSETNVVEVAVRRLRLKL-DAPFEQPLLHTVRGMGYVLE 224 >gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] Length = 230 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 5/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ I + L+ +++ + L + D I+LD L + G E Sbjct: 6 VLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSGIEF 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + + P+ +L+ + ++KV+GL+ GADDYI+KPF+ ELVAR++A+ R + Sbjct: 66 ARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTA 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I L ++ V +G +++ EY++++ + T+ L+ ++ Sbjct: 126 VQGMETPIEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G E + +DV I +LRK L + ++TV G GY A Sbjct: 186 GGNVYVEERTVDVHIRRLRKALE--PSHHHLVQTVRGTGYRFSTRAP 230 >gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 124/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G+ + IILDL + +I G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTNPDIGLIILDLMMPEIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVIKRVRKDSDI-PILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G+ I+TVWG GY + ++ Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH 229 >gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 +++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVAR++A+ R Sbjct: 64 IIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLRRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I L ++ + V + + + E++++ ++E LN++ Sbjct: 124 SPMVMEDIIEMDGLVLDSTSHRVTSRDKALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGANVYVEDRTVDVHIRRLRKVLEI-GGHDKMVQTVRGTGYRF 225 >gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 228 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ ++ +++ LK E F V GED +E + + D +ILD+ + + G+E Sbjct: 4 KILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLGGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L K + + + + I DKV GL+ GADD++SKPF+ EL+ARI+A+VRR Sbjct: 64 VCRRLESRKGIGILLL-TAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L V ++T E+ + LT KE+ ++ LL T++ L Sbjct: 123 EGAPAPEGTEVVLGPLRVRPSSRTAELGAIALDLTPKEFDVLALLVSHAGRVYTRDELLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + +D+ I +LRKKL + ++TV+G GY Sbjct: 183 QVWSFDYVGGTRTVDIHIQRLRKKLEP---HQAILQTVYGIGYK 223 >gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CFBP2957] gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CFBP2957] Length = 232 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L I G Sbjct: 7 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGISGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 67 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKIDEGHPVP-LLKTVRGLGYRL 228 >gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60 R+LL+EDD A+A + L E + V G D + + D +ILDLGL D+ G Sbjct: 3 RLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPDLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ IL+ + D V GL +GADDY++KPF EL ARIRA++RRS+ Sbjct: 63 EVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRRSQ 122 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S ++++ A+ G + L+ KEY ++ +L + +T++ + + Sbjct: 123 ATEESGDSYDVNGVTLDVSARRAYADGEELSLSAKEYDLLTVLVRESGSVVTRDDLMREV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + K +D+ I LR+KL + A I TV G G+ ++ Sbjct: 183 WGAEWWGSTKTLDMHISWLRRKLGDDATDPRRITTVRGVGFRFETGSE 230 >gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 229 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +++ F + + I L K D I+LD G + Sbjct: 4 RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ + P+ +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V V + + E++++ ++E L+++ Sbjct: 124 APTRLEETIDVQGLLLDPVSHRVSVGETVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + +G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 225 >gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7] gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD AL + L N++ + D + Y D I+LD + D G E Sbjct: 7 KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASDLPARIQRYSPDLIVLDRMMPDGDGAE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR PV +L+ D+V GL++GADDY+ KPF+ EL+ARI A++RR +G Sbjct: 67 ACRRLRQQGEDIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRRKKG 126 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G + + + + I LTG E ++E L L++E L Sbjct: 127 ASALNKDQPVSFGPFTFDPATRQLSKDDETIKLTGGEVNLLEALINNSGKPLSRERLLAL 186 Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + E + ID+ I +LR+ + + +I+TVWG GY Sbjct: 187 ARDDDEGERNDRAIDIAILRLRRAIEDDPKQPRWIQTVWGVGYRFSP 233 >gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 219 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + V + G G + E+D ++LD+ L G+ Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+RR + Sbjct: 61 TLLQNLR-RSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 PRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVL 219 >gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 226 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 110/222 (49%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD + I++ L+ V G + + + + D +++D+ + ++ G+ Sbjct: 3 KILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R PV +L+ V+G + G DDY+ KPF ELV R++A+++R + Sbjct: 63 ELCREIR-RNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G+L +N + L KE++++ L+ +TLT++ + ++ Sbjct: 122 VAASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR++ + I TV G GY L Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEE-KYRFRIRTVRGLGYRLE 222 >gi|89096819|ref|ZP_01169710.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088199|gb|EAR67309.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++D+K++ +E +L+ E F+ ++ E+ +E + D ++LD+ L GF+ Sbjct: 6 ILLVDDEKSIVKLMETVLRKEGFSSIHTAYTAEEALECVSRHPIDIVVLDVMLPGQSGFD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + + + + S D + G G DDYI+KPFN E+ ARI+A +RR++ Sbjct: 66 ICPKIREISDAYILFL-TARVSDLDVLTGFAIGGDDYITKPFNPLEIAARIKARLRRNQA 124 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G ++ +A + V+G + + + +++ L NT ++K L Sbjct: 125 PSPALKEAGRKHDFGRFILDEEAGDLIVEGKAVQTPAQVFLLLQYLCQHPNTVISKTQML 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + V I ++R+++ + TV G GY L + K Sbjct: 185 EAVWGFDSFVDDNTVTVHIRRIRERIEKDPSHPELLVTVRGLGYKLVKGKK 235 >gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ] gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ] Length = 246 Score = 172 bits (435), Expect = 4e-41, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L H +E L + + V + E L F+ ++LDL L G Sbjct: 13 KILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQMDRLLGRELFNLVVLDLMLPGEDGMS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + + +L+ +++GL+ GADDY++KPFN EL+ARI+A++RR Sbjct: 73 ACRRLRASDNQVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRRQVP 132 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ GD ++L + + LT E+ +++ L LT++ Sbjct: 133 VVPGAPASEDEIVSFGDYRLSLATRELMKGDQVQMLTTGEFAVLKALVQHAREPLTRDKL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + + IDV I +LR+ + YI+TVWG GYV + Sbjct: 193 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 243 >gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 226 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V G + ++ D ++LDLGL DI G + Sbjct: 3 RVLVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGLPDISGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL LR ++ PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 63 VLAGLRG-WLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +I T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 122 ASELEQPVIETDTFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLKEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + V++ +LR+KL + ++ T G GY E Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFEE 226 >gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + F + G +G+ L ++ I++DL L + GFE Sbjct: 4 RILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQLPGMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ I+S + DK+R GADDYI+KPF+ ELVAR +A + R + Sbjct: 64 LCRQIR-KNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYKR 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I L ++ A+ V V+ + T +E+ ++E L+ N +K Sbjct: 123 LMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEVVFTTREFNLLEFLASHPNRVFSKNEL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V + KLR+KL + YIETVWG GY Sbjct: 183 FERIWGMDSSGDIATVTVHVRKLREKLELDSSNPQYIETVWGAGYRF 229 >gi|312961275|ref|ZP_07775780.1| two-component system, OmpR family, response regulator [Pseudomonas fluorescens WH6] gi|311284933|gb|EFQ63509.1| two-component system, OmpR family, response regulator [Pseudomonas fluorescens WH6] Length = 235 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD+ LA I L F V V G++ + ++ ++LDL L G Sbjct: 8 KVLLVEDDEKLAGLIAHFLSQHGFEVRVVHRGDEALAAFLDFKPKIVVLDLMLPGQSGLH 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + TP+ IL+ D + GL+SGADDY+ KP L+AR+RA+ RR Sbjct: 68 VCREIR-SVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQAP 126 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L+++ + V + I LT E++++ LL+ T L+++ LN + Sbjct: 127 EPTVRGALAFGRLAIDRSCRVVSLGEDTIDLTTMEFELLWLLASNAGTLLSRDDILNRMR 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +DV+I KLR KL++ I+TVWG+GY+ A + Sbjct: 187 GIAFDGLNRSVDVYISKLRGKLNDNPREPVCIKTVWGKGYLFNPFAWE 234 >gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 13/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + L L E F D GE+ I L ++ D ++D+ + + GF+ Sbjct: 4 ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFDF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR + PV L+ S +D++ GL G DDY+SKPF+K EL+ARI+A++RR+ Sbjct: 64 VKKLR-ETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQR 122 Query: 123 AQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++I D N A++V+V I LT KE+ ++ L + T+E Sbjct: 123 NRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E + +D I LR KL N I+TVWG GY L + Sbjct: 183 LLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKLVD 229 >gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] Length = 236 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 IL+++DDK +A +E+ L ++ + V GE ++ K + +ILD+ + I G E Sbjct: 7 ILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLKEHPEVRMLILDIMMPGIDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ ILS + DK+ G +GADDY++KPF+ EL+AR+++ ++R Sbjct: 67 VCREIR-KTSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYTT 125 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I DL++N A V+ G + LT E+ ++ LL+ ++ + + Sbjct: 126 IQLGEEQQPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFSTD 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + V I +LR+K+ + + ++TVWG GY + Sbjct: 186 EIFEKVWNEKVYEVNNTVMVHIRRLREKIEDNSRSPKILKTVWGVGYKIE 235 >gi|168182818|ref|ZP_02617482.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794261|ref|YP_002861813.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673963|gb|EDT85924.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263864|gb|ACQ54897.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 240 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG++ E D +ILD+ L D G+ Sbjct: 10 KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRAKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++ G +N+ + +G I L KE +I + N ++KE Sbjct: 129 YVENAIEEKNILSFGPFELNMSKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLV 235 >gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas fluorescens Pf-5] Length = 224 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A + L + V + G DG+ L + + +D +ILD+ L I G+ Sbjct: 1 MRILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPHIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 VL +R + V +L+ + DK+RGL GADDY+ KPF EL+AR+R + R Sbjct: 61 GVLGQIRQDSSTR-VMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL ++ RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QAPVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +++V I +LR K+ + + I T+ G GYVL E Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFERKLIHTLRGVGYVLEE 222 >gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 234 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDDKA+ SI + LK+ N++V G+D +E + E +I+DL + ++ G E Sbjct: 5 KILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNVTGEE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K P+ ILS S DKV GL GADDYI+KPFN EL+AR+ + +RR Sbjct: 65 AILKIR-EKSYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLYK 123 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I G + +N KTV V G ++ LT EY+++ELL N + + Sbjct: 124 YQSKEENERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ E K + V I ++R+K+ Y++ WG GY + + Sbjct: 184 KVWN-EPAIEAKTVTVHIRRIREKIEIDPKKPLYLKVAWGLGYKFVKPNR 232 >gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVVKEVRKDSQI-PIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L++ D+ V G +I LT E+ ++ LL+ N + + Sbjct: 120 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ IETVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRA R+ Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122 Query: 121 GHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 227 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + I + E F V G IE+C+ +FD II+D+ + ++ GF Sbjct: 3 RILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVMMPELDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R +R TP+ +LS DK+ G + G+DDY+ KPF+ +EL+ R+ A+++RS+ Sbjct: 63 ACREIR-KFKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQG 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + LSV+ A+ V + G RI +T KEY++ + K LT+E + Sbjct: 122 AQNEENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + +D I LRK L + I T+ G GY Sbjct: 182 SEVWGYDFFGDERTLDTHIKLLRKSLGEYS---RCIVTLRGVGYRFE 225 >gi|239908419|ref|YP_002955161.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239798286|dbj|BAH77275.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 225 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD A + LK + V G + + +DA ++D L + G Sbjct: 1 MRVLIVEDDLDAAAYLVKGLKESGYVVDHVADGREALYRVAAETYDACVVDRMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R A + PV ILS + ++D+V+GL++G DDY+ KP+ EL+AR+ A++RR R Sbjct: 61 TIVKTMRSAGNAAPVLILSALGDVDDRVKGLKAGGDDYLVKPYAFAELLARLEALLRRGR 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DL ++L +TV G I L KE+ ++E L +T+ M L +++ Sbjct: 121 SDAPDTMLKVADLEMDLVGRTVRRAGRPIELKPKEFALLEYLMRHAGHVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV + +LR+K+ + T+ G GY LR++ Sbjct: 181 DYSFDPQTNVIDVHVSRLRQKIDKGHDKP-LLSTIRGAGYSLRDS 224 >gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D++ + + L L+ +NV G+ +++ D +LD+ + ++ G++V Sbjct: 5 ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 L+ LR PV ++S +K+ GL GADDY+ KPFN E VAR+ +RR Sbjct: 65 LKRLR-ETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGM 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +L ++ +A + G + LT EY+++ + TK+ Sbjct: 124 AAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + V + +LR KL + I+T+ G GY L + Sbjct: 184 ECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLEK 229 >gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 +IL+ +DD L I+ +L+ +N+ V G++ +E+ +ILD+ + G Sbjct: 3 KILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQNPEISLVILDVMMPQYDGM 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R+ PV IL+ + ++++ L+SGA+DY++KPF+ E L+AR ++R R Sbjct: 63 EVLRRIRLQSNV-PVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLMRMVR 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S + G++ V+ V V+G I LT KEYQ++ L ++ LT++ L ++ Sbjct: 122 NKSDSHLQVGEVVVDEKKCRVYVRGKEISLTHKEYQLLVYLMQNRDIVLTRDQILEKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++ ID I LR L + YI T+ G GY L Sbjct: 182 FDYEGDIRTIDTHIKMLRMDLKSCGS---YIRTIRGMGYTL 219 >gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 227 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+VFI +LRKKL N IET+ G+GY LR + DE Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLRVISPDE 227 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A +EL L E + V G G+E+ + FD IILD+ L + G E Sbjct: 5 KILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYMNGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 VLR +R P+ +L+ + DKV GL GA+DYI+KPF EEL+ARIR+ + Sbjct: 65 VLRKIRHN-SEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKNH 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +G L +++D V + LT KE+ ++ + LT++ L ++ Sbjct: 124 GISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+DV+I LR K+ + K I T+ G GY+L+ Sbjct: 184 GYDYMGDTNIVDVYIRYLRSKI-DDKYNKKIIYTIRGVGYLLK 225 >gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 249 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 7/241 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD ++ L+ E + V + G+ ++ D I+LD+ L + G + Sbjct: 5 HILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGLQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115 +LR +R V +++G D++ L+ GADDY++KPFN EL+AR + Sbjct: 65 LLREIRHQSEVG-VIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + G G + LT E++++ + R +T++ L Sbjct: 124 AREASEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDNLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +++ P + +DV + +LR+K+ +I TV G GYV ++ E ++ Sbjct: 184 DYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFADSRHIEPGSPEKS 243 Query: 236 A 236 A Sbjct: 244 A 244 >gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + +D +E + I++D L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGGHDKMVQTVRGAGYRF 225 >gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ +A + L E F G G + D ++LD L D G + Sbjct: 5 KILIIEDEEPIADLLAYGLAMEGFETRTASSGAAGFRELAAFHPDLLLLDWMLPDQSGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + + P+ +++ S I DKV GL+ GADDYI+KPF+ E+VARIR I+RR Sbjct: 65 ICKKV-TTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + + + + V G + LT KE+ ++ + + T+ Sbjct: 124 ANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRSE 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ ++ + + +D I +LRKKL + I TV+G GY + A+ Sbjct: 184 LLDLVWGYDFMGDTRTVDTHIQRLRKKLDAG----DLITTVFGIGYKFEKQAE 232 >gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 12/231 (5%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57 MR +L+++DDK ++ I + L++E + V GE+ + E D +ILD+ + + Sbjct: 1 MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + R +R S P+ +LS S DK+ GL +GADDY+ KPFN EL R++ ++R Sbjct: 61 NGIDTCRRIR-ETSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLR 119 Query: 118 RSRGHAQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS + L + N V G + LT +E++++ LL+ + + Sbjct: 120 RSTQYNTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFS 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + V I LR KL G I+TVWG GY + Sbjct: 180 AEDIFQQVWKEKYYVSNNTVMVHISNLRDKLEKELGY-KLIQTVWGVGYKI 229 >gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + + + + L E F+V G +G++ + D ++LD+ + D+ G++ Sbjct: 5 RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ ++DKV GL GADDY+ KP + EEL+ARI A++RRS Sbjct: 65 VCKKMR-EIAPVPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRSSH 123 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + DL++ + + V V I LT KEY +++LL+ T ++ + Sbjct: 124 QAHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAIVE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ E ++ID I +R+KL N I+TVWG GY +++ Sbjct: 184 RLWGNDFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGYKWDDSS 232 >gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037] Length = 232 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWVLASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 ++ + ++V I LR++L+ I+TVWG GY + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKME 226 >gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. 83/13] gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M28] gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M5-90] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADPIRTVRGAGYSF 227 >gi|254525273|ref|ZP_05137328.1| Two component Transcriptional regulator, Winged helix family [Stenotrophomonas sp. SKA14] gi|219722864|gb|EED41389.1| Two component Transcriptional regulator, Winged helix family [Stenotrophomonas sp. SKA14] Length = 245 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 5/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+ LA + L+ F V G+ C+ + + ++LDL L + G +V Sbjct: 17 VLLVEDDRRLAELVSDYLREHGFAVQHLARGDLAGAACRQHAPELVVLDLMLPGLGGIDV 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +L+ ++V GL+SGADD++ KP L+AR+RA++RR G Sbjct: 77 CRQIR-SFSDVPILMLTACEDDIEQVLGLESGADDFVHKPVEPRLLLARLRALLRRRHGS 135 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G+L ++ + V + G + L E++++ LL+ + L+++ L + Sbjct: 136 STSGTPCRLMHGELLIDRMQREVHLHGLPVELGTTEFEILWLLASQPGQILSRDQILQAV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +DV I KLR+KL + A I+TVWGRGY +A Sbjct: 196 RGIGFDGLDRSVDVSIGKLRRKLGDDAREPRRIKTVWGRGYQFNPSAW 243 >gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 239 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 112/231 (48%), Gaps = 14/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA +I L +E + V G ++ D II+DL L + G E Sbjct: 14 ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + A+ PV +L+ D V GL GADDY+SKPF+ ELVAR+RA++RR Sbjct: 74 TK-RIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDRA 132 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L ++ + V + G +HLT E+ ++ L+ + ++ LT+E Sbjct: 133 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D + LR KL + I TV G GY Sbjct: 193 LEEVWDWVDASSTRTVDSHVKALRHKLGAST-----IRTVHGVGYAFEPPE 238 >gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQKIR-DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++++++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + + I K+R K N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +ED++ + + L + F G++ + K + I+LD+ L G+ + Sbjct: 2 IYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIMLPGEDGYTL 61 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L L+ + PV +++ + DKVRGL+ GADDYI+KPF E +AR++A+ R Sbjct: 62 LEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRRSK 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ L+VN++ V + LT KE++++ L K L+++ L ++ Sbjct: 122 KHSSKKEYHYKTLTVNVERHQVFDNDRAVELTLKEFELLRYLVENKGIVLSRDEILEKIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I LR+KL ++ IETV G GY + ++ Sbjct: 182 GYECAGETRTVDVHIRTLRQKLGDSGF---LIETVRGVGYRIGDS 223 >gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L+++ F V + GE+ + + + D I+LD + ++ G EV Sbjct: 8 VLVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + P+ +LS S DKVRGL++GADDY+ KP++ EL+AR+R R Sbjct: 68 CRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V ++ L E++++ + ++E L+ ++ Sbjct: 128 PSTVGVRLEFDDIVLDAETHKVSRADTQLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ G + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQHGGS-DPVRTVRGAGYAL 228 >gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630] gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDDK + + L SEN++V G IE+ K Y FD I+LDL L GF Sbjct: 1 MDILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + PV I + S DK+ GL GADDYI+KPF+ EL+ARI+A +RR+ Sbjct: 61 EVLKYIR-SVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119 Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I DL +N+ V G ++LT E+++++LL+ + +KE Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ +++ I +LR KLS+ NYI+T+WG GY + E Sbjct: 180 YNAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas elongata DSM 2581] gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB [Halomonas elongata DSM 2581] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + I + L+ +++V D + + ++ D ++LD + G E+ Sbjct: 6 VLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMPGTSGIEL 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + + P+ +L+ S ++K++GL +GADDYI+KPF+ ELVAR++A+ R + Sbjct: 66 ARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRRST 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L ++ + V V G+ + + EY++++ + T+ L+ ++ Sbjct: 126 PHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L + + I+TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGD--PYQQLIQTVRGTGYRF 225 >gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 258 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + S+ L+ E + V G + ++D ++LDLGL + G Sbjct: 1 MRLLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR + +TPV I + ++ ++ GL +GADDY+ KP++ +EL ARIRA++RR+ Sbjct: 61 AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ + G +S+N + G + L+ +E+ ++E L R L++ LY Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDETCE 231 +DE ++V++ LRKKL + I + G GY++ +E A Sbjct: 181 WKDEISSNAVEVYVHSLRKKLG-----PDLIRNIRGMGYMIAKEPAPASPSR 227 >gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + + + L S+ + V GE+G+ + D ++LDLGL D+ G +V Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGEEGLAQAALGKPDLVVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV +LS +S KV L GA+DY++KPF +E +AR+RA++R+ Sbjct: 67 LRELR-EWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G L+V+ + V + G + LT KEY ++ LL+ +T++ L ++ Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + + LR+KL + +I T G GY L Sbjct: 186 PTHVEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229 >gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 240 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD+A+ + L+L++E F G +E+ + D I+LD+ L + G V Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + P+ +L+ S D V GL++GADDY+ KPF EL+ARIRA R ++ Sbjct: 64 ARRIR-ATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPA 122 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + G + ++ T G ++LT E++++ +L+ Sbjct: 123 AEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ L +++ + + ++++V + +LR K+ + ++TV G GY + Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240 >gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1 str. 16M] gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330] gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str. 9-941] gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC 25840] gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365] gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445] gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19] gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo] gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457] gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308 A] gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6 str. 870] gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3 str. Tulya] gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2 str. 86/8/59] gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str. 513] gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str. 686] gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis M163/99/10] gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis B2/94] gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13] gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4 str. 292] gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis M292/94/1] gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1 str. Rev.1] gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1] gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94] gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9 str. C68] gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99] gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68] gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94] gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10] gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94] gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513] gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686] gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13] gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1] gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1] gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1] gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2] gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1] gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1 str. 16M] gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330] gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC 25840] gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365] gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445] gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19] gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo] gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC 23457] gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308 A] gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68] gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94] gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94] gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10] gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513] gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686] gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1] gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1] gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1] gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13] gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2] gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28] gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90] Length = 239 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRRLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128 Query: 123 AQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 129 DGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238 >gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 243 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +L + + ++ E ++V + G + + D I+LD+ L D G Sbjct: 18 IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+R +R+ + + P L+ +I ++ GL +G DDYI+KPF+ EE++AR+R ++RR Sbjct: 78 EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAG 137 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ G I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHTPMIHTMRGAGYVLKP 241 >gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 237 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 17/237 (7%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL EDD+A+ H++E L E + V G + + D ++LD+ + I G +V Sbjct: 2 LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---- 119 R LR TP+ +L+ + D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ Sbjct: 62 RVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPAL 121 Query: 120 ------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + I L ++L A+ V + LT E++++ELL Sbjct: 122 AAGPAEDVPARGPQLPERQIEAAGLRMDLQARRVWRGARELELTRTEFELLELLVRNAGI 181 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L + ++ P K + V++ LR+KL + I TV G GYVLRE+ Sbjct: 182 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPDAPQLIHTVRGVGYVLRED 237 >gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 246 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 7/242 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD A+ I L+ +++ G G L + D I+LDL L + GF Sbjct: 3 RILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + LR + PV +LS + +DKV G +GADDY++KPF E++AR+RA++RR+ Sbjct: 63 VCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLRRT 122 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + + LT E++++ L R T++ Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAIWFEQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 L ++ + +++ I V I LR KL YI+TV+G GY L + + + Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPSSKQLPASDD 242 Query: 235 TA 236 A Sbjct: 243 LA 244 >gi|300776691|ref|ZP_07086549.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300502201|gb|EFK33341.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+D+ + + L+ E +++Y G +GIE K D I+LD+ + + G E Sbjct: 4 KILLIDDELDILEILSYNLEKEGYDIYTATNGNEGIEKAKEIVPDLILLDVMMPEKDGIE 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR T + LS S ++ G Q+GA+DYI K + L++++ A+++ + Sbjct: 64 TCQELRKVKELQKTLIVFLSARSEEFSQLAGFQAGANDYIVKLIKPKILISKVNALLQLT 123 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL ++ D V G + L KE+ ++ LL+ +E L Sbjct: 124 SQVSDNAKLIEIGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTEKVFKREEILEK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + IDV I +LR+KL I+T+ G GY L Sbjct: 184 VWGNDVIVGERTIDVHIRRLREKLGINT-----IQTLKGIGYKL 222 >gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L ++ + L + F V G + + + ++LDLGL D+ G Sbjct: 6 RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV +LS S DKV L +GADDY++KPF EE +AR+RA VRR Sbjct: 66 VLEGLRG-WTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRRGAV 124 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G V+L AK V G RIHLT E++++E+L + ++++ LN Sbjct: 125 SSGLPEVPMVDAGSFQVDLAAKQVTRHGERIHLTPTEWEILEILVRNEGKLVSQKEILNS 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V++ LR+KL + ++ T G GY Sbjct: 185 VWGPTYLGQSNYLRVYLASLRRKLEDDPVHPRHLITEAGMGYRFV 229 >gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMAHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi 103S] gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi 103S] Length = 224 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ +L + + L+ + F V G +G++ + + DA+ILD+ + + GF +L Sbjct: 2 LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGML 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR + PV L+ ++EDKV GL GADDY++KPF+ EE+V R+R I+RR+ Sbjct: 62 RRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHSD 121 Query: 124 QSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++ D + V G + L+ E+ ++ + T L+K L+H+++ Sbjct: 122 DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 EV +++ ++ LR+K+ I T+ G GYV+RE Sbjct: 182 YDFGGEVGVVESYVSYLRRKI--DTTEPRLIHTLRGVGYVMREP 223 >gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 6 KIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRS 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + + L E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLVLDRQQHRVYRKEKEVRLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRALDPIRTVRGAGYSF 227 >gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria] Length = 227 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L + + G DG+ L E+D +ILD+ L + G+ Sbjct: 1 MKILVVEDEPKTGEYLRQGLTEAGYVSDLVPNGADGLHLALQGEYDLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I R Sbjct: 61 QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILRRGH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ +++ DL ++L + V G R+ LT KE+ ++ELL R L + + + ++ Sbjct: 121 AGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +I+V + +LR K+ + I+TV G GYVL ++ Sbjct: 181 DMNFDSDTNVIEVAMRRLRVKI-DEGHAVKLIQTVRGMGYVLDVPEEE 227 >gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium atrosepticum SCRI1043] gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L++ ++ G D +E + + I+LDL L G + Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLMLPGCDGLTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ D++ GL+ GADDYI KPF+ E+V R+R ++RR Sbjct: 73 CRTIR-QFSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131 Query: 123 AQSLIVTGDLS----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ G + LT E+++++ LS ++E L+ L Sbjct: 132 NDGVKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 YD + ID I LR+KL ++I TV+G GY +E Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241 >gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 247 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family protein [Actinomyces oris K20] gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] Length = 249 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++D+ + + L+ F V + G ++ + D ++LD+ L D+ GF Sbjct: 16 HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++TP+ L+ + DKV+GL G DDY++KPF EE++ARIRAI+RR+ Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++ DA V + L+ E++++ L L ++K L+H+ Sbjct: 136 IENQDDGVVRVADLVLDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227 ++ + I++ +I LR+K + A G I+T G GY+LRE + Sbjct: 196 WEYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLREPKAE 249 >gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC] gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ LA + L E + + V G DG+ + +D I+LD L I GF Sbjct: 1 MKLLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR TPV +L+ IED+VRGL++GADDY+ KPF ELVARI ++RR+ Sbjct: 61 GLLAALR-QNKQTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAA 119 Query: 121 GHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + GDL V+L + G RI L+ KE+Q++ LL RK L++ Sbjct: 120 GTAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + +IDV + +LR KL + + + TV G GYVL + Sbjct: 180 QVWDVNFDHGTNVIDVAVRRLRSKL-DLPFERPLLHTVRGMGYVLED 225 >gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD A+ + L+ + Y G + + + + + IILDL L + G +V Sbjct: 5 ILIVDDDMAINDMLVKYLRKNGYTTYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGEQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L ++ + PV LS + K+ L++GADDY++KPF+ EEL+ARI I+RR + Sbjct: 65 LAEIK-KTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYEN 123 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL+++ ++ ++ LT E+ ++++L TK+M L+ Sbjct: 124 QYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQLW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E I+V I LRKK++ K+YI+TVWG G+ + Sbjct: 184 NEALEGSENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKM 225 >gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 299 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL L++E+F VY E+ + E D +LD+ + I G E Sbjct: 72 KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 131 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + + P+ +L+ + DK++GL GADDYI+KPF E+VAR++A +RR + Sbjct: 132 LCKKIR-ERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 190 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + L +N + + LT E+ ++ +L +K ++ E Sbjct: 191 YNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELF 250 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+ ++ YI+TVWG GY + + Sbjct: 251 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 299 >gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] Length = 223 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + I+ + E F G +E+C+ FD II+D+ + ++ GF Sbjct: 3 RLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +R +R STPV +LS DK+ G + G DDY+ KPF+ +EL+ R+ AI++RS Sbjct: 63 AVREIR-KTSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ G L+V+ + V + G R+ +T KEY + L K LT+E +N ++ Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I LRK L +G I T+ G GY Sbjct: 182 GYDFYGDDRTLDTHIKLLRKSLGEYSGT---ITTLRGVGYRFE 221 >gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241] gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241] Length = 221 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 63 ICKIMRGQSDV-PIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +V++ID I LRKKL YI+TV G GY + Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 220 >gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 235 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+LIED+ ++ I+ L+ + + V G G++L + +FD +ILD+ L ++ G + Sbjct: 3 KIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ L+ + + E+ V GL+SG DDY+ KPF ELVAR+++++RRS Sbjct: 63 VCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRSNN 122 Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + + DL VN K V G I LT EY+++ ++ Sbjct: 123 NGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNPEKVIS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + L+ ++ E ++DV++ LRKKL + I TV G GYVL++ Sbjct: 183 RAEILDAVWGVNYELGTNVVDVYVNYLRKKL-DNQEDNKLIHTVIGMGYVLKK 234 >gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 245 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L+ E + V V G +G+ L K I+LDL L DI GF V Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + TPV IL+ M DKVRG + GADDY++KPF E +AR++A++RRSR Sbjct: 74 LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRTA 133 Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + G+++++L ++V ++G + L +EY ++ L R ++E Sbjct: 134 KPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASRE 193 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ D + +D + +LR+KL ++ TV GY + Sbjct: 194 ELLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRM 242 >gi|187926366|ref|YP_001892711.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|241665853|ref|YP_002984212.1| transcriptional regulator [Ralstonia pickettii 12D] gi|187728120|gb|ACD29284.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240867880|gb|ACS65540.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 243 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 6/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + F V V G+ + ++LDL + + G Sbjct: 5 KILVVDDDVELRDLLREYLTQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 LR LR PV +L+ S D++ GL+ GADDY+ KPF+ EL+ARI A++RR Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRLT 124 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N +T+ + ++ E+ +++LL LT+E + Sbjct: 125 VPASAPEDRDSFSFGPFKLNFRMRTLFRGDSALSISDTEFALLKLLIGHAMQVLTREHIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +Y + IDV I +LR+ L A YI+TV GRGY + ++E E Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLEEDAQRPRYIQTVRGRGYTFVPDEREEVNE 240 >gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I+DD L + L ++ FNV GE G++L + ++ I+LD+ L + GF Sbjct: 1 MKLLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR TPV +L+ D++ GL+ GADDYI KPFN EL+AR++AI RR Sbjct: 61 EVLKQLR-QTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119 Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++NL A+ ++ + LTG EY+++ LL+ R ++KE Sbjct: 120 HITTMNTTSSNKLVVNGVTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + ID+ + +RKK++ I+T+ G GYV Sbjct: 180 SEDVLGRRLASFDRSIDMHVSNIRKKIAEHLPN-ELIKTIRGTGYVF 225 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD L + L+ +++ + + GE ++ +D I+LD+ L + G Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A ++TPV +L+ +ED+V+GL GADDY++KPF+ EL+ARIRA++RR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS+N ++TV + I LT KE+ ++E L + + +++ H++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRE 223 +P +DV I LRKK+S I T+ G G+++ + Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDD 230 >gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ +L+++D+K +A IEL LK+EN+ V+ G +E K + D ILD+ L DI Sbjct: 1 MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPDI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFE+L+ +R + PV +L+ ++ DK+ GL GADDYI KPF EL+AR++A +R Sbjct: 61 DGFEILKEIRKD-HNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLR 119 Query: 118 RSRGHAQSLIVTGDLS-------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + + + + +N + + LT E+ ++ +L+ K ++ Sbjct: 120 RFIRYNDGSGQSSEDTLEIAGLVLNRNTHQCLYGEEEVTLTPLEFSILWILTKNKGKVIS 179 Query: 171 KEMFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ + + V I LR+KL G K I+TVWG GY + E Sbjct: 180 SENLFEQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233 >gi|18309439|ref|NP_561373.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144115|dbj|BAB80163.1| two-component response regulator [Clostridium perfringens str. 13] Length = 234 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEVHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L VN D K V + G + +T E+++++LL + E Sbjct: 125 LNMVKKDEKKTNSYSIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ + +EL L +E F V GE + +E I+LD+ + + G Sbjct: 7 IRVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMPGMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R L+ V +L+ I+D+V GL +GADDY++KPF+ EEL+ARI+A +R Sbjct: 67 AVCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G +++ K + G + L+ EY++++LL + + L+K LN ++D Sbjct: 127 PSLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL + I T+ G GY Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGD--KEHRVIRTLRGAGYR 224 >gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GEHDRMVQTVRGTGYRF 225 >gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23] gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23] gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W] gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVVKEVRKDSQI-PIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L++ D+ V G +I LT E+ ++ LL+ N + + Sbjct: 120 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ IETVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] Length = 225 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L +I L+ + + V GE ++ +D IILDL L + G Sbjct: 1 MRILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R+ T + ILS ++DK+ GL GA+DY+ KPF+ EEL AR+R++ RR Sbjct: 61 KVLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRRCV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++S++ A+T +G + LT KE ++E L L + +++E + H++D Sbjct: 121 VQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + I V I LRKKL A G + I G+GY++ Sbjct: 181 GSVDSFSNSIRVHISALRKKLRAALGY-DPITNRIGQGYLI 220 >gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114] gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component regulatory system with EnvZ [Vibrio fischeri ES114] Length = 239 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 109/233 (46%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +I G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSAEDKMIEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + + Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVFVPDGAE 238 >gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. 16M] gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella melitensis bv. 1 str. 16M] gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] Length = 255 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 33 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 92 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 93 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 152 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 153 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 212 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 213 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADSIRTVRGAGYSF 254 >gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300] gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 232 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWILASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 ++ + ++V I LR++L+ I+TVWG GY + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKME 226 >gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 234 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + ++I +L E + +Y G + I++ +E I++D+ + + G Sbjct: 8 ILVVDDDHDIVNAIAKLLGKEGYIIYKAYNGLEAIDMLMQHEIQLILIDVMMPKLDGLSA 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R K + P+ +LS S DK+ GL GADDYI+KP+N ELVAR+ + +RR Sbjct: 68 MMKIR-EKNNIPIIVLSAKSEDSDKILGLSMGADDYITKPYNPMELVARVNSNLRRYLSL 126 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + G L ++ DA+ + + G + T EY++ ELL T + E Sbjct: 127 GAAGSTMSDNKLRIGGLELDKDARQITLDGEPVKFTPTEYKITELLMENAGRTFSAEDIY 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + V I +R+K+ Y++ VWG GY + + Sbjct: 187 SRIWNEDSYSVENTVMVHIRHIREKIEINPSEPRYLKVVWGIGYKMEK 234 >gi|159900447|ref|YP_001546694.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893486|gb|ABX06566.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 134/225 (59%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ LA IE L+ E+ V V G+ G+++ +D ++D L + G Sbjct: 1 MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA+R AK++T + +L+ S IED+V GL SGADDY+SKPF EEL+AR+RA+ RR Sbjct: 61 SICRAIRAAKLTTSLLLLTARSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + +G++ ++L A T ++ LT E+ ++E L N L+++ L++++ Sbjct: 121 SNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLECLIRNSNQALSRQQLLDYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV+I LR+KL ++ I+TV G GY + Sbjct: 181 SYERDVQPSMVDVYISYLRRKLEQ-PTKRDPIQTVRGVGYRWVSD 224 >gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+A+ ++E+ L+ EN+ V G+ ++ + I+LD+ + ++ G Sbjct: 6 VLVCDDDRAIVDALEVYLRQENYEVIKAYTGKQALKALAEQKIHLILLDVMMPEMDGLSA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R P+ ILS S DK+ GL GADDY++KPFN EL+AR+++ +RR Sbjct: 66 TVKIREELNI-PIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRRYTLL 124 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I G L ++ +AK V + G + LT EY ++ L + E + Sbjct: 125 GGAAEKSGVIKNGGLELDTEAKEVRLDGELVKLTATEYGIVLFLMNNIGRVFSIEQIYEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 185 VWNEPLYSSESTVAVHIRRIREKMEINPKDPKYLKVVWGIGYKIEK 230 >gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 3/226 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD L+ I L+ FNV G+ +E + ++ ILDL L G +V Sbjct: 5 LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQVC 64 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR A S P+ +L+ D++ GL+SGADDY+ KP L+ARIRA++RR Sbjct: 65 RDLR-AFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNKGQ 123 Query: 124 QSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G LS++ ++V G + LT E++M+ L+ + LT++ LN + Sbjct: 124 EQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRGI 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV + KLR+KL + I+T+WG+GY+ A + Sbjct: 184 EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTIWGKGYLFSPKAHE 229 >gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++++A IEL L++EN++++ G+D +E + +D ILD+ + D+ GF + Sbjct: 5 ILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVMMPDLDGFSL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R PV +L+ S+ DK+ GL GADDY++KPFN EL AR++ +RR + Sbjct: 65 LKKIR-KHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYLRY 123 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L +N + ++LT E+ ++ L ++ +T E Sbjct: 124 NQNPSTNQHIYDFNGLVINNHTHKCTLYDQPLNLTPIEFSILWYLCSKRGNVVTSEELFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + + +LR+K+ A +I+TVWG GY + Sbjct: 184 AVWQEKYLDNNNTVMAHVARLREKMHENARKPKFIKTVWGVGYTIE 229 >gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct] Length = 231 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 3/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+D+ + + + L ++ + V GE+G+ D ++LDLGL D G ++ Sbjct: 8 ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 LR LR PV +LS +S +KV L GA+DY++KPF +E +AR+R ++R+ Sbjct: 68 LRDLR-EWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G L V+ + V ++G + LT KEY ++ L+ +T++ L ++ Sbjct: 127 ESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + V + LR+KL + ++ T G GY LR++ Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDSG 231 >gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] Length = 223 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR + Sbjct: 61 SVLQVLR-QFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + +++ Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV + +LR K+ + I T+ G GY + Sbjct: 180 INFDTDTNNIDVAVRRLRSKI-DEGYEPKLIHTIRGLGYKI 219 >gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium JCVIHMP022] gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium JCVIHMP022] Length = 234 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GEDG+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEDGLELFTQGGVDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+AR+RA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQM 121 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VAESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++ + K +DV + ++R K+ Y+ TV G GY + + Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDAPIE 234 >gi|298246096|ref|ZP_06969902.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553577|gb|EFH87442.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 125/221 (56%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + + + + E F V+V+ G + ++ + ++ D +ILDL L + G V Sbjct: 14 ILLVDDERQIIEFLRMGFEYEGFTVHVSMTGHEALQAVERHKPDIVILDLMLPGLDGMAV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + + A + + + + +ED+V GL+ GADDY++KPF +EL+AR+RA++RR Sbjct: 74 AQQIHGAYNTAIIML-TAREEVEDRVTGLELGADDYVTKPFAFKELLARVRAVLRRRGLQ 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++V D+++N + V I LT +E++++EL LT+ L ++ Sbjct: 133 LGNVLVFQDITLNRTTRVVRRGAREIELTPREFELLELFLSHPRQVLTRNAILARIWGYN 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+V++ LR+KL + ++TV G GYVLRE Sbjct: 193 YVGDDNVIEVYVKHLREKLQDLP--PQLLQTVRGVGYVLRE 231 >gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + I L E F GE+ + + D IILD+ + + G + Sbjct: 4 KILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPGMDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R++R +TP+ +LS DK+ GL+ GADDY++KPF+ +EL +RIRA R+ Sbjct: 64 VCRSIR-KSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122 Query: 122 HAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + N + +++L+ KE+Q++ +L NT LT+E Sbjct: 123 LFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVLTREQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + E+ + V I +RKKL ++I+T+WG GY +E Sbjct: 183 IYEYVWG-DEYGELNTVTVHIKNIRKKLGP---EYDFIKTIWGIGYKYKE 228 >gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB, [Edwardsiella ictaluri 93-146] gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative [Edwardsiella ictaluri 93-146] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + +L+ + + + + D I+LD L G Sbjct: 3 IRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGI 62 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++++ L+ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 63 QLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ LS++ + V V + + E++++ ++E LNH Sbjct: 123 ISPMALEESISLQGLSLDPISHRVTVHDSAVDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + +DV I +LRK L +G ++TV G GY Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALE-GSGHDRMVQTVRGTGYRF 225 >gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 232 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD L + L+ + V GE IE K +ILD+ + G EV Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV +L+ D++ GL+ GADDYISKPFN EL+ARI+A++RR++G Sbjct: 67 LRDLRP-HSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGP 125 Query: 123 AQSLIVTGDL-----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +G + +++ + +E++G + L+ E+++++ L +T++ + Sbjct: 126 ENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTS 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + IDV I KLR ++ I+TVWG GY+ Sbjct: 186 VWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 246 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 7/237 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+DD A+ + L+ + V G G D I+LDL L + G Sbjct: 3 RVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDGLT 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + + P+ +L+ + I+DKV G +GADDY++KPF EEL+ R+RA++RR+ Sbjct: 63 ICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLRRT 122 Query: 120 RGHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + I LT E++++ L R T++ Sbjct: 123 DRMPQAARHAEILSLGPLTLIPERFECIWFNKPIKLTHLEFELLHCLLQRHGQTVSPSEI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++ + +++ I V I LR KL +I+TV+G GY L + + Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPQFIKTVYGAGYCLEVPQAIQDGQ 239 >gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 226 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD + I++ L+ V G + + + + D +++D+ + ++ G+ Sbjct: 3 KILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R PV +L+ V+G + G DDY+ KPF ELV R++A+++R + Sbjct: 63 ELCREIR-RNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L +N V+ L KE++++ L+ +TL ++ + ++ Sbjct: 122 VAASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV + +LR++ + I TV G GY L Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEE-KYRFRIRTVRGLGYRLE 222 >gi|288940893|ref|YP_003443133.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896265|gb|ADC62101.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 236 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ + + + L+S+ + V + G+EL D I+LDLGL D G Sbjct: 9 RLLIIDDEEQIRRFLRISLRSQGYQVIEAETAGKGLELAATQTPDLIVLDLGLPDADGKS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI---VRR 118 VL LR + PV ILS SS +KV L +GA+DY++KPF +E +AR+RA+ R Sbjct: 69 VLNELRH-WSTVPVMILSVRSSESEKVAVLDAGANDYVTKPFGIQEFLARVRALLRLPRA 127 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G L ++L + V V G +HLT KE+ + ++L +T+ L + Sbjct: 128 TERPDAGIYDDGYLHIDLIKRIVSVMGEEVHLTRKEFAIFKMLVSNPGQVITQTQLLREI 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + FI ++R+KL Y+ T G GY Sbjct: 188 WGPTHAGDTHYLRNFIGRIRQKLREDTDEPRYLRTEPGVGYRF 230 >gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L L+ + + V + GE +E+ D ++LDL L I G E Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V RA+R P+ +LS D + GL+ GADDYI+KPF+ + L+ARIR+++RR Sbjct: 65 VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124 Query: 120 R-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I ++++ TVEV G +I LT E+ ++ L+ R T+ Sbjct: 125 QAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I LRKKL + YIETV G GY RE Sbjct: 185 VDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFRE 230 >gi|186683239|ref|YP_001866435.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465691|gb|ACC81492.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 710 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 2/233 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++E+D+ A ++ L ++ F V +EL + E+D I+LD+ L D G Sbjct: 1 MKLLIVENDQDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +L+G D++ G ++GADDYI+KP+ EL+ARIRA++RR Sbjct: 61 RLCRQLRTQNQQEPILLLTGKVDPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V QG +HLT KEY+++EL + L+ + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRQIFDRRTLLDRICS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231 + P + + I LR+KL A + IET++G GY L+ +++ E Sbjct: 181 IDECPGEEAVTTQIRGLRRKLQMAGLNSDPIETLYGLGYRLKSVPEEREQGSE 233 Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL +E L+ F V + + D ++LD+ + G E Sbjct: 592 RLLIVDDDPALLSMLEAQLQLWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 651 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + ++ + PV +LS + + R L +GADDYI KP Sbjct: 652 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPI 695 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PGF 60 +LLI+DD L ++ + + ++ + ++ DAIILDL + G Sbjct: 468 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLIFPNTTESGL 527 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 +L L+ + PV +L+G+ + +V + GA+ ++ KP Sbjct: 528 TLLAQLKHQFPTIPVLVLTGLGDLTKRVEVTRLGANAFLQKP 569 >gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A +E+ L S+ F V+ + EDG++L + + ILD+ + + G E+ Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGFKVFKANSAEDGLKLIENEDIHLAILDIMMPGMDGLEM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS S+ DK+ GL +GADDY++KPFN EL AR+++ +RR Sbjct: 66 CKKIR-ETHNFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQL 124 Query: 123 AQSLIVTGD----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + V +S+N D V ++G+ + LT E+ ++ LL+ + + Sbjct: 125 NPNSSVIDKDDPNEIRLKGMSINKDNHKVIIEGNEVKLTPIEFDILYLLASNAGRVFSTD 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + V I +LR K++ I TVWG GY + Sbjct: 185 EIFEKVWNEKVYEANNTVMVHIRRLRGKMNEDERENKIITTVWGVGYKIE 234 >gi|322806176|emb|CBZ03744.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 12/234 (5%) Query: 1 MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 MR +L+++D+K + +IE+ L+S E+ N+ G D +++ + E IILD+ + Sbjct: 1 MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G +R + + P+ +LS + DK+ GL GADDYI+KPFN ELVAR+ + + Sbjct: 61 LDGIRTCMKIR-ERNNIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQL 119 Query: 117 RRSRGHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR I L +N + V V G ++ LT EY ++ LL+ Sbjct: 120 RRYTNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNLGRVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +LRKK+ YI+ +WG GY + + Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKIDK 233 >gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDDK +A+SI L L++E F+V G + IE+ K D II+DL + + G E Sbjct: 5 KILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR P+ ILS S DKV GL GADDYI+KPFN EL+AR+ + +RR Sbjct: 65 AIKKLR-DISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I G++ +N KT V I+LT EY+++E L N + E H Sbjct: 124 YDNLASSEIIQIGNVKLNTLEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ E K + V I ++R+K+ YI+ WG GY +N + Sbjct: 184 VWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231 >gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43] gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43] Length = 219 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILRKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 113/220 (51%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++DD + + + L++E F + G++ ++ + +ILD+ + ++ G+E+ Sbjct: 4 IMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMDGWEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ K++G + G DDY+ KPF+ +ELV R++A+++R R Sbjct: 64 CRKLR-EHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRIA 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A + G L ++ V + KE++M+ L+ T+++E + ++ Sbjct: 123 ASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWGYD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR++ A G I TV G GY L Sbjct: 183 FEGNERTVDVHINRLRERFPEAMYGF-LIRTVRGLGYRLE 221 >gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] Length = 239 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 14/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA +I L +E + V G ++ D II+DL L + G E Sbjct: 14 ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + A+ PV +L+ D V GL GADDY+SKPF+ ELVAR RA++RR Sbjct: 74 TK-RIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRRVDRA 132 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L ++ + V + G +HLT E+ ++ L+ + ++ LT+E Sbjct: 133 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D + LR KL + I TV G GY Sbjct: 193 LEEVWDWVDASSTRTVDSHVKALRHKLGAST-----IRTVHGVGYAFEPPE 238 >gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3] gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3] Length = 233 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 90/223 (40%), Positives = 135/223 (60%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L + N+ V D GE G+ K Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQSNLKQHLLAANYTVDTADDGEIGLFQGKEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 ALITELRALTIEFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + + G I L+G EY+++E L +K + H+YD Sbjct: 121 GKASPVINNGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+VFI +LRKKL +A IET+ G+GY L + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DADNQLGLIETLRGQGYRLTK 222 >gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 112/221 (50%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ALA + E + V G+ G+EL D ++LD+ L + G+ Sbjct: 3 KILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + A R S P+ +L+ D VRGL+ GADDY+ KPF+ EL+AR+RA +RR R Sbjct: 63 ICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRRHRS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD ++ D+ + +G + LT KEYQ++E L + LT++ + ++ Sbjct: 123 EDERCFSFGDFHLDRDSVRLTREGKEVKLTRKEYQLLEYLLIHSGKALTRQGIMASVWGS 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR K+ ++ T+ GY Sbjct: 183 SVMVTQRSVDRCVTTLRGKIEKEPSRPRHLLTIRDVGYRFE 223 >gi|153008164|ref|YP_001369379.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833135|ref|ZP_04681464.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium LMG 3301] gi|151560052|gb|ABS13550.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825402|gb|EEQ96970.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium LMG 3301] Length = 239 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRRLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128 Query: 123 AQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + TG ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 129 DGTAKPTGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFRE 238 >gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 225 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + N+ G G+ L ++D IILD L + G Sbjct: 1 MKILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G L++ L + V + G I L KE+Q+++ L N +++ + ++ Sbjct: 121 SQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 226 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ + L + V G G + ++D +ILD+ L G+ Sbjct: 1 MRILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR K TPV L+ + D+V+GL+ GADDY++KPF+ EL+AR+R+I+RR + Sbjct: 61 TLLQNLR-RKRCTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRRGK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L + Q I LT KE+ ++ LL ++ L + + ++D Sbjct: 120 PREFTLLKVADLELDLTRRKATRQHDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220 >gi|126699276|ref|YP_001088173.1| two-component response regulator [Clostridium difficile 630] gi|255100802|ref|ZP_05329779.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|115250713|emb|CAJ68537.1| Two-component response regulator [Clostridium difficile] Length = 241 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 15/234 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+I+D+ + +E +LK E N +Y ++G+EL K D I+LD+ L D G+ Sbjct: 4 RVLIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIMLPDGEGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R ++P+ LS + DK+ GL G DDY++KPF+ +E+ R++A +RR Sbjct: 64 DICKEIR-KTSNSPIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLS 122 Query: 121 GHAQSLIV-------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + + G +N + G I L+ KE +++ L + +N Sbjct: 123 YFSDAQNESKNLNNNEEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++KE + ++ I V I K+R+KL + YI T+ G GY L Sbjct: 183 IISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236 >gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] Length = 260 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 35 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWMLPGGSGIQ 94 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 95 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 154 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V H + + E++++ ++E LN++ Sbjct: 155 SPMAVEEVIEMQGLSLDPSSHRVMSNEHALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 214 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 215 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 256 >gi|228908986|ref|ZP_04072816.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228850708|gb|EEM95532.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 223 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 181 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 221 >gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 229 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G E+ Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITG-EI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 66 FIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S V N ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSEGVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + I+V I LR K++ +YI+T+WG G+ + Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228 >gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] Length = 228 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 109/221 (49%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI L+EDDK +A ++ L+L++E FNV + I + FD ++D+ L D GF Sbjct: 3 RIFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISLPDGNGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++ + PV L+ V GL GADDYI KPF EL ARIR +R+ Sbjct: 63 VCTEIK-QAQNIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTALRKYGH 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + + V+ G + L+ EY+++ + N +T++ L+ L+D Sbjct: 122 SPAAFEMCDLHV-DTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDA 180 Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V+I +LR+K+ N G I TV G GY L Sbjct: 181 AGEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221 >gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia pseudomallei K96243] gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia pseudomallei K96243] gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 247 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|309778833|ref|ZP_07673604.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA] gi|308922357|gb|EFP67983.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 6/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + F V V G+ + ++LDL + + G Sbjct: 5 KILVVDDDVELRDLLREYLTQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 LR LR PV +L+ S D++ GL+ GADDY+ KPF+ EL+ARI A++RR Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRLA 124 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N +T+ + ++ E+ +++LL LT+E + Sbjct: 125 VPASAPEDRDSFSFGPFKLNFRMRTLFRGDSALSISDTEFALLKLLIGHAMQVLTREHIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +Y + IDV I +LR+ L A YI+TV GRGY + ++E E Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLEEDAQRPRYIQTVRGRGYTFVPDEREEVDE 240 >gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSAEDTIVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|93005532|ref|YP_579969.1| two component heavy metal response transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393210|gb|ABE74485.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 238 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED++ L I+ L F V G DG EF +++D+ L D+ GF Sbjct: 1 MKVLLVEDEQKLGEYIKKGLTEAGFIVDHYMTGLDGYHALMTEEFSVVLMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A+ TPV L+ + D+++G++ G DDY++KPF EL+ RI++++RR+ Sbjct: 61 ELIQRYRAAEKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I T DL +++ +TV I LT KE+ +++ R+ L + + + + Sbjct: 121 QSDYKSTVIHTADLKMDIAKRTVYRGDTLIKLTAKEFALLQFFLERQGEVLPRTVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + + +IDV I +LR K+ + I TV G GY L Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKI-DDGFDTKLIHTVRGMGYRLEP 224 >gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + ++ F + + IEL K D I+LD G + Sbjct: 4 RILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ + P+ +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V V + + E++++ ++E L+++ Sbjct: 124 APTRLEETIDVQGLQLDPVSHRVTVGDAVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-GGHDKLIQTVRGAGYRF 225 >gi|94314717|ref|YP_587926.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358569|gb|ABF12657.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 242 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 14/245 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 MR+LL+EDD + S+++ L+ E F V G+ G++ +D ++LDLG Sbjct: 1 MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLG 60 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L PG +VL+ LR + TPV IL+ ++ D+V GL +GADDY+ KPF+ +EL AR+ Sbjct: 61 LPRRPGLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMH 120 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+VRR+ G A+ ++ GD+ +N + G + L+ +E+ ++ L R + Sbjct: 121 ALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVPQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDETCE 231 LY DE ++V+I LR+K A I + G GYV+ A+ +T Sbjct: 181 LQERLYGWDDEVGSNTVEVYIHALRRKFGAA-----LIRNIRGVGYVIPAESGAEQDTKG 235 Query: 232 YLETA 236 E A Sbjct: 236 GPEGA 240 >gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] Length = 229 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + +E + I++D L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ P+ +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTSLDDVIDVQGLKLDPVSHRVTSNDKPLEMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEEH-GHDKLVQTVRGAGYRF 225 >gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + L+SE + V + G +E + DA++LD L D G Sbjct: 22 RVLVVDDEPDLTDVLGAALRSEGWEVRIACDGAGALEAADGFHPDAVVLDWMLPDTDGLG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL ALR V L+ ++ED++ G+ +G DDY++KPF EE++AR+R +VRR+ Sbjct: 82 VLHALRRRIPQVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAGM 141 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL ++ +A+ V G + L+ E++++ L L+KE L+ + Sbjct: 142 SREADAPRLVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++++I LRKK+ AG I TV G GYVL+++ Sbjct: 202 WSYDFGGRAHVVELYISYLRKKI--DAGQAPLIHTVRGVGYVLKQD 245 >gi|167773041|ref|ZP_02445094.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM 17241] gi|167664974|gb|EDS09104.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM 17241] Length = 235 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+ + SI + L EN +Y G + + + I++D+ + + G + Sbjct: 7 VLVVDDDREIVESIAIYLSRENLTIYKAYDGLQALNIVAAHTIHLILMDIMMPKMDGIKA 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + LR + + P+ ++S DKV GL+ GADDYI+KPFN EL+AR+++ +RR Sbjct: 67 MLKLR-ERNNIPIILVSAKGEDADKVFGLEFGADDYITKPFNPLELIARVKSQLRRYVML 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 IV G L++++ K +EV G + LT EY++ ELL + Sbjct: 126 GTARDRGGPAETIVCGGLTLDVRQKRLEVDGEEVKLTPIEYKITELLMRHPGRVFPIDEI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 186 YERVWNEPSFAPENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKIEK 234 >gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 231 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD ++A + L+ +F V + G G+ K ++D IILD+ L + GF+ Sbjct: 3 KILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR PV ++S DK++GL GADDYI+KPF+ ELVAR+++ ++ Sbjct: 63 ILRI-IHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +N D++ V + ++L KE+ ++ ++ N K+ Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ YIETVWG GY +R Sbjct: 182 LFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIR 230 >gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or CreC) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi] gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|313819282|gb|EFS56996.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|314960588|gb|EFT04690.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|315085982|gb|EFT57958.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] Length = 236 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + + ++LDL L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ + + V+GL +GADDY+ KPF EL+ARIRA +R Sbjct: 70 CQDIRRESGV-PIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL+++ A V++ G I LT EY ++ ++ N ++E L ++ Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 189 YTNIIDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235 >gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032] gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB [Cronobacter turicensis z3032] Length = 229 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I LS++ + V + + + E++++ ++E LNH+ Sbjct: 124 SPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 233 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 118/224 (52%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+K++ + LK E + V GE+ + + +ILDL L + G++ Sbjct: 4 KILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLMLPVMNGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ + + +L+ I DK+ GL+ GADDY++KPF+ EL+ARI+++VRR Sbjct: 64 I--CKKLENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLVRRLNK 121 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G +++N +TV ++ + LT E+ ++ LL ++E LN Sbjct: 122 TIDEKKDIGVITINDLNINKKKRTVSIKNVLVELTPMEFDLLYLLLSNPGIVYSREQLLN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +++ + +D I ++RKKL + ++ I+TV+G GY Sbjct: 182 IIWNMDYVGGTRTVDTHIQRVRKKLGD--SYQDLIQTVYGIGYK 223 >gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894] gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I LS++ + V + + + E++++ ++E LN++ Sbjct: 124 SPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEQ-SGHDRMVQTVRGTGYRF 225 >gi|110799947|ref|YP_694916.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168216455|ref|ZP_02642080.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624595|ref|ZP_02952377.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674594|gb|ABG83581.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|177910199|gb|EDT72587.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182381505|gb|EDT78984.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 234 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L VN D K V + G + +T E+++++LL + E Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB] gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 243 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD L + L + F V G+ +L + I+LDL + G Sbjct: 9 HILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMPGEDGLT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 69 ICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQGS 128 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I ++ V+L A+T++ LT E+ ++++L L+++ Sbjct: 129 KPPGAPEDEPETITFSNIEVDLAARTLKRGEELQALTTGEFAVLKVLLQHPRQPLSRDKL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ P + IDV + +LRK + Y++TVWG GYV + Sbjct: 189 MSLARGREQGPFDRAIDVQVSRLRKLIETDPAQPRYLQTVWGFGYVFVPDG 239 >gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 222 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + ++ L + V V GED I L +D +ILD+ + I G Sbjct: 1 MKILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR K + +LS ++DKV GL +GADDY++KPF EL+ARIRA++RR+ Sbjct: 61 EVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I L+VNL + V+ G I LT KE+ ++E KN LT+ M +++ Sbjct: 121 EDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV+I LRK + I TV G GY+L+ Sbjct: 181 IDFLTDTNVVDVYINHLRK-KIDKDFDDKLIYTVRGVGYILK 221 >gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 230 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD +A +E +LKSE++ V + + G+ +E I+LD+ L + G++ Sbjct: 4 RILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLSGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI+TP+ +L+ DKV GL GADDY++KPF EL+ARI+A++RR Sbjct: 64 VCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRRIEK 123 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + GD +++ + + LT +E ++++L L+++ LN Sbjct: 124 PAAESIGKESFTIGDATIDPRTFELRRGKVQEELTARELKLLQLFHGHPGEVLSRDRLLN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +D I +LRKKL + ++ TV G GY + Sbjct: 184 DVWGYGYYGTTRTLDQVIVQLRKKLGDNGAEPKHLVTVHGVGYKMV 229 >gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +IE+ LK++N+NV+ G + +E+ + E +++D+ + + G + Sbjct: 4 ILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIMMPRLDGTKT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R S P+ LS S DK+ GL GADDYI+KPFN EL+AR+ + +RR + Sbjct: 64 TIKIR-ETSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTNY 122 Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A ++I G + + D+K + V G I +T EY+++ LL N + E Sbjct: 123 ANNNTPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + V I ++R+K+ G Y++ VWG GY + + Sbjct: 183 EKVWKEPAY-NPDTVTVHIRRIREKIEINPGEPRYLKVVWGVGYKFEQPKR 232 >gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L+++ F V + GE+G+ + D I+LD + ++ G EV Sbjct: 8 VLIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R S P+ +LS S DKVRGL++GADDY+ KP++ ELVAR+R R Sbjct: 68 CRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRSR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GD+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PSAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ GG + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQ-FGGDDPVRTVRGAGYAL 228 >gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 252 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 26 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 86 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 144 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 145 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 204 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 205 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 248 >gi|323357268|ref|YP_004223664.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273639|dbj|BAJ73784.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 238 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++DD+ + + L+ + V V G++ ++ + + D+ + + G E Sbjct: 8 ILLVDDDETIRAGLGAFLERSGYRVVVAADGQEALDALPVGDIALAVCDVIMPRVDGREF 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R P+ +L+ + ++ L GADDY++KPF+ +EL++R+RA++RRS Sbjct: 68 VRRVRAEGRWLPIILLTQVGESYERSAALDEGADDYLNKPFDPQELLSRVRAVLRRSVPG 127 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G L ++ A+ V G + LT K +++ L T++ L Sbjct: 128 ERPLSAAPRLRAGALELDRSARRVWRDGTEVTLTPKAVMLLDYLMAHPGEVHTRDRLLTA 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ + ID I +LR+ L + G YIETV GY Sbjct: 188 LWGFDFVTSTRAIDHRIAELRRVLGDDPGAPRYIETVQSAGYRFV 232 >gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L++ ++ + G D ++ + + I+LDL L G + Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLMLPGCDGLTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ S D++ GL+ GADDYI KPF+ E+V R+R ++RR Sbjct: 73 CRTIR-QFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131 Query: 123 AQSLIVTGDLS----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ G + LT E+++++ LS ++E L+ L Sbjct: 132 NDGVKAIEKTETALVIDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 YD + ID I LR+KL ++I TV+G GY +E Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD A+A + L E + V G ++ D +ILDLGL D+ G + Sbjct: 45 KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDGLD 102 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R I+ P+ IL+ + D V GL SGADDY++KPF EL+AR+RA++RR+ Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I D+ V + A + LT KE+ ++ +L + +++E + ++ Sbjct: 163 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 222 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 K +D+ + LR+KL + A YI TV G G+ Sbjct: 223 GSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 265 >gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str. Houston-1] gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str. Houston-1] Length = 222 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + +K+ + GE+ L +DA+ILD+GL + G Sbjct: 1 MRILIVEDDRNLNRQLAEAVKNAGYVSDSAFNGEEAYFLGSTESYDAVILDIGLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV +L+ DKV G+ +GADDY+ KPF+ EEL+AR+RA++RRS Sbjct: 61 CVVEKWRKEGHLMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEELMARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ V G I LT E++++ L + +++ HLYD Sbjct: 121 GHATSTLCCGKVLLDTKTSRVFFDGQLIKLTSYEFRLLSYLMHHGDRIVSRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++VF+ +LRKKL IET+ G GY +R Sbjct: 181 QDFDKDSNTVEVFVGRLRKKLGMD-----LIETIRGMGYRVR 217 >gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G E+ Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITG-EI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 66 FIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S V N ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSKGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + I+V I LR K++ +YI+T+WG G+ + Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228 >gi|307325941|ref|ZP_07605140.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888433|gb|EFN19420.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 244 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + L+ E + V G +++ + + DA++LD L D G Sbjct: 19 RVLVVDDEPDLTEVLSGALRYEGWEVRTAADGASALDVARAFRPDAVVLDWMLPDTDGLA 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRA+R V L+ ++ED++ GL +G DDY++KPF+ EE++AR+R ++RR+ Sbjct: 79 VLRAVRAELPDVCVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVLARLRGLLRRAGM 138 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ A+ V G + L+ E++++ L L+K L+ + Sbjct: 139 AREPGDDRLVVADLVMDEQAREVTRGGVAVELSRTEFELLRFLMRNPRRVLSKAQILDRV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++++I LRKK+ AG I TV G GYVL+ A Sbjct: 199 WSYDFGGQAHVVELYISYLRKKI--DAGRAPLIHTVRGVGYVLKAEA 243 >gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A L+ F V + G+ G++ +FD IILDL L ++ GF+ Sbjct: 3 KILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVR-EIKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L+S + V G + +EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGLPKLHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR S PV IL+ SIE +V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 EVLKKLRGRGSSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G LS + + + I L+ +E ++E+L R ++K+ + L + Sbjct: 121 GSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V+I +LRKK+ G I TV G GY L + Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPIRIATVRGLGYCLEK 220 >gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLKLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 14/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ E + V G + + D ++LD+ + + G Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR A + PV +L+ D+V GL +GADDY++KPF +EL+AR+RA++RR Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALT 135 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 ++ DL ++ + V G I LT EY ++E+ L Sbjct: 136 GEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQAL 195 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 T+E L ++ EP +DV++ +RKK ++TV G GY LR Sbjct: 196 TREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFD-DLPRLVQTVRGVGYALR 247 >gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 110-3] gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H263] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDCMVQTVRGTGYRF 225 >gi|89076062|ref|ZP_01162422.1| osmolarity response regulator [Photobacterium sp. SKA34] gi|89048214|gb|EAR53796.1| osmolarity response regulator [Photobacterium sp. SKA34] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KILVVDDDMRLRALLERYLFEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A +I G+ +NL + + + LT E+ +++ L ++++ Sbjct: 126 EAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N + IDV I +LR+ + YI+TVWG GYV + ++ Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGRE 238 >gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas haloplanktis ANT/505] gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas haloplanktis ANT/505] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V E L + F ++LDL L G Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDYI KPFN EL+ARI+AI+RR Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +LI G ++NL + + I LT E+ +++ L L+++ Sbjct: 127 EVPGAPAAEENLIAFGKFTLNLATREMSEGDKTISLTSGEFAVLKALVSHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV + +LR+ + A YI+TVWG GYV + + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVFVPDGE 238 >gi|319764977|ref|YP_004128914.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330827171|ref|YP_004390474.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317119538|gb|ADV02027.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329312543|gb|AEB86958.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 225 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + + V G L FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLCAQLVQAIAGAGHTVESAGDGVQAHYLGDVESFDAVVLDLGLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ S ++KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRRWRAAGRNMPVLILTARGSWQEKVAGMDAGADDYLAKPFHMEELLARLRALLRRVG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL RK L++ H+Y Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGRPLTLTSHEFKLLSLLMQRKGEVLSRTELAEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + I+VF+ +LRKKL IETV G GY L + Sbjct: 181 QDSERDSNTIEVFVGRLRKKLPE-----GCIETVRGLGYRLVD 218 >gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 226 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ + L + V + G G + ++D +ILD+ L G+ Sbjct: 1 MRILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR STPV L+ + D+VRGL+ GADDY++KPF+ ELVAR+R+I+RR + Sbjct: 61 TLLQNLR-RTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + QG I LT KE+ ++ LL ++ L + + ++D Sbjct: 120 PRESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKV-DDAYEPKLIHTVRGMGYVLE 220 >gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 6/219 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ EDD A+A + + L+ + F V V G + + A+ LD+GL G E+ Sbjct: 11 VLIAEDDAAIADLVSMYLRRDGFGVRVETDGVGALTAIRSVRPVAVALDIGLPGKDGIEL 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR A TPV ++ D++ GL+ GADDYI+KPF+ EL AR+R ++RR+ G Sbjct: 71 CTELRAAGDWTPVLFMTARDDEVDRLLGLEIGADDYITKPFSPRELTARVRTVLRRASGG 130 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + ++ + V + LT E+ ++ L +E L+ ++ Sbjct: 131 SAATEALTVGAVRLDPARRRVWAADAEVELTVTEFDLLASLMRNPGQVFAREQLLSAVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV I +LR KL + + I TV G GY Sbjct: 191 YTASAGTRTVDVHIAQLRGKLGDHS----PIRTVRGVGY 225 >gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895] gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDY++KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6] gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus MO6-24/O] gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6] gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus MO6-24/O] Length = 231 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K + L + V + G DG+ +D I+LD+ L + G+ Sbjct: 1 MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR ++ TPV +L+ +ED+V+GL+ GADDYI KPF EL+ARIR +++R + Sbjct: 61 QVLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS +L ++L + V I LT KE+ ++EL + +++ + + Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + +IDV + +LR K+ + I T G GYVL E Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKV-DKPFEPKLIHTERGMGYVLEEREP 227 >gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 232 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +L I L+ + V G + + D +ILDLGL + G Sbjct: 1 MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R + TP+ +LS D+ G GADDY+ KPF+ EL+AR RA++RRS Sbjct: 61 EVIRTARARAVDTPILVLSARERAADRALGPDVGADDYLGKPFDTNELLARTRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G L ++ +V G + LT +E+ ++ LL ++ + +E HLY Sbjct: 121 GRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +DV + +LR+KLS A I T+ G GY L E Sbjct: 181 WDEDVASNAVDVHVHQLRRKLSAA-----VIRTIRGIGYALDE 218 >gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622] gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus] gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622] Length = 226 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA ++ L++ F G G+ + + D ++LDL L D+ G E Sbjct: 3 RILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAGSE 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR L+ V I+S D+V+GL+ GADDY+ KPF+ EL+ R++A++RR+ Sbjct: 63 VLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRRA 122 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 V +GD+S++ V V+G + LT E++++ L R + T+E+ L+ Sbjct: 123 DAEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLSD 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + E + +D I +LR+KL A + IETV G GY L Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKLSPP 226 >gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 225 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++ I++ LK ++V G + ++ K E D +ILD+ L + G+ Sbjct: 3 KILIIEDEYPISQVIKVYLKKAGYDVEQVFDGSNAMDTFKHVEPDLVILDVMLPGVDGWT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 +L+ +R V +L+ + + ++ GL GADDYI+KPF+ EELVAR++A++RR + Sbjct: 63 LLQDIRSKCA---VIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVLRRIGN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++I G L +++ A V + G I LT ++ ++ + N T T+E L+ ++ Sbjct: 120 KNNNSNVIKFGTLEIDVVAHRVRLLGTIIELTPRDLSLLLFFADNPNRTFTREQLLDSIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D+ I +LRK L + + I+T G GY Sbjct: 180 GWDYDGSDRAVDLSIKRLRKSLKDWPKSEGEIKTFRGLGYQF 221 >gi|163940906|ref|YP_001645790.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863103|gb|ABY44162.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I ++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 181 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 221 >gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 14 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 74 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDKMVQTVRGTGYRF 235 >gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] Length = 225 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+ LA ++ +L+ F+V + G D ++ ++D I+LD+ + G Sbjct: 1 MRILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R + PV +L+ S IED+V GL++GADDY+ KPF E +AR++A+ RR+ Sbjct: 61 EVLSQIRSEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +++ G++ ++ + + + + L KEYQ++EL + + + ++ ++ Sbjct: 121 GYADTVLSLGNVRLDCNRYELSCKEETVRLNNKEYQLMELFFQHPHFVFSTDHLMDKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E ++ ++ +I +RKKL + I+TV G GY L N Sbjct: 181 KDSEADIDVVWTYIGFIRKKLKHIGADIE-IKTVRGAGYSLEGN 223 >gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 235 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 2/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A + L + V G DG L +++D I+LD+ L GF Sbjct: 1 MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A TPV +L+ +ED+++GL GADDY+ KPF+ EL+AR++A+ RR R Sbjct: 61 AVLRALR-AVKQTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +L ++L A+ RI LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 KQEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + +++V I +LR K+ +A + T+ G GYV+ + + A Sbjct: 180 MNFDSNTNVVEVAIKRLRDKI-DAPFSPKLLHTIRGMGYVMELRDTESEAQGEGGA 234 >gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] Length = 246 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+ ++ED++AL + L++E + V V G++ K D ++LD L + G E Sbjct: 4 RVTVVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWMLPGLSGVE 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R LR PV +L+ ++V+GL GADDY+ KPF+ E AR++A++RR+ Sbjct: 64 ICRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRA 123 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GDL ++ A V G + L E++++E L T+E L+ + Sbjct: 124 SPEKVASVLSAGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK ++ A ++ I TV G GY L E Sbjct: 184 WGRDIYVDERTVDVHVGRLRKAINR-ARDRDPIRTVRGAGYALDEQ 228 >gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] Length = 262 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L NF V G + IE+ + + D I+LD+ L DI GF V Sbjct: 28 IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 88 TRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 147 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L L+K L+H++ Sbjct: 148 TEEDPIIRVGDLEINEDSHDVTRSGQTIDLSPTEYKLLRYLMDNAGRVLSKAQILDHVWQ 207 Query: 181 GRDEPEVKIIDVFICKLRKKL---------SNAAGGKNYIETVWGRGYVLREN 224 + I++ +I LRKK+ + IET G GY++RE Sbjct: 208 YDWGGDAAIVESYISYLRKKVDGIEVTDENGDKHKVTPLIETKRGIGYMIREP 260 >gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 262 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 8/242 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60 RIL+++DD + + L+ + F+V V G + I L D ++LD+ L G Sbjct: 16 RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R L PV +LS D++ GL+ GADDY+ KPFN EL+ARIRA++RR R Sbjct: 76 SIARRLDPKTRP-PVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I GD +++ + + + LT E+Q+++ R N + ++ Sbjct: 135 MEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQI 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 +++L + IDV I +LR+K+ Y+ T+WG GY+ + + Sbjct: 195 MDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGRSPRSPDAS 254 Query: 235 TA 236 TA Sbjct: 255 TA 256 >gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 298 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L I+DD + ++ L+ + + + + D +ILDL L D G E Sbjct: 75 LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLEF 134 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ PV +L+ + DKV GL+ GADDY+ KPF EL+ARI+A +R + G Sbjct: 135 CCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPGA 194 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L ++L +TV+V G ++LT KE+Q++ L +N +T+E L+ Sbjct: 195 GTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLWR 254 Query: 181 GRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++IDV I LR+K+ ++I TV GRGY E Sbjct: 255 DSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFME 298 >gi|332637342|ref|ZP_08416205.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 250 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 18/252 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L++ED+ +++ + + K EN++ G D + + +D +ILDL L + Sbjct: 1 MKLLMVEDNTSVSEMMGMFFKKENWDASYAYDGNDAVAMFNEEPDAWDMVILDLNLPGLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAVKIREVSKHVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 120 Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166 + H + T +N + + + G+ I LT KE+ ++ +L+ ++ Sbjct: 121 SETAGQPASSEPQVHEDFDVQTRTFKLNSNTREAYLNGNLIQDLTPKEFDLLRVLAKKQR 180 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN-- 224 ++E L ++D + + +D + KLR+K+ G I+TVWG GY ++ Sbjct: 181 QVFSREQLLQLVWDYEYFGDERTVDAHVKKLRQKIEKV--GPQVIQTVWGVGYKFDDSNV 238 Query: 225 AKDETCEYLETA 236 DE E A Sbjct: 239 TSDEESEASAKA 250 >gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 240 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 117/238 (49%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD+A+ + L+L++E F G +E+ + D I+LD+ L + G V Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPIVKPDLILLDVMLPGLDGTGV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + P+ +L+ S D V GL++GADDY+ KPF EL+ARI A R ++ Sbjct: 64 ARRIR-ATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKPA 122 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + G + ++ T G ++LT E++++ +L+ Sbjct: 123 AEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ L +++ + + ++++V + +LR K+ + ++TV G GY + Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240 >gi|257455860|ref|ZP_05621080.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus SK60] gi|257446745|gb|EEV21768.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus SK60] Length = 244 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K L I+ L F V G DG +F +++D+ L D+ GF Sbjct: 1 MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A TPV L+ + D+++G++ G DDY++KPF EL+ RI++++RR+ Sbjct: 61 ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I DL +++ +TV I LT KE+ +++ R+ L + + + + Sbjct: 121 QSDYKSSVIHIADLKMDIAKRTVYRGNTNIKLTAKEFALLQFFLERQGEVLPRTVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + + +IDV I +LR K+ + I TV G GY L Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKI-DDGFDTKLIHTVRGMGYRLEP 224 >gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] Length = 226 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLIEDD+ +A SI+ L+ E F + V + +EL K +F +ILD+ L D GF Sbjct: 2 IRILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTLPDGNGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ ++ PV L+ + E+ V+G + GAD+YI+KPF EL++RIR ++R + Sbjct: 62 ELFEEIKAR-KELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTG 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I + +NL+ V RI LT EY+++ L K LT+ L+ + Sbjct: 121 ILEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGI 180 Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +D + + V+I +LR+K+ I+TV G GY Sbjct: 181 WDESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGYK 223 >gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 243 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 2/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ LA+ ++L L + NF+V + + + FD I++D L D G Sbjct: 14 KILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTLPDGDGLM 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR A TP +L+ S D V GL+SGADDY++KPF+ EL AR++A++RR Sbjct: 74 LCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGHQ 133 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++N D + V ++ LT +E+ ++ ++ ++ L ++ Sbjct: 134 TEHEEQQLDFNGITINCDTREVIAFDTQLELTAREFDLLLFMAKHPKQVFSRLQLLEAVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ I +LR KLS+ ++TVWG GY Sbjct: 194 GYSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGYKFSPPE 239 >gi|86750553|ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573581|gb|ABD08138.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 241 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L ++D +++D L G Sbjct: 16 MRLLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR TP ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 76 SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V + L +E++++E L +T+ M L +++ Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 196 DYHFDPQTNVIDVHISRLRGKIDKGFDRP-LLHTIRGAGYMIRD 238 >gi|288919562|ref|ZP_06413892.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288349068|gb|EFC83315.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 243 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%) Query: 13 AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72 S+E L+ E + V G D ++L + D ++LD+ + + G E R LR Sbjct: 13 RESLERSLRFEGYEVRTAADGVDALDLVGREQLDIVVLDVMMPRMDGLETCRRLRGRGND 72 Query: 73 TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD- 131 PV +L+ ++ D+V GL GADDY+ KPF EEL AR+RA++RR+ + G Sbjct: 73 VPVLMLTARDALADRVSGLDVGADDYLVKPFALEELFARLRALIRRATLTTRGAAGQGQA 132 Query: 132 -------------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ ++ V + LT E++++EL L++ + + Sbjct: 133 ADRDGASALLYSDVRLDPVSRQVLRGPRELTLTKTEFELLELFLSHPRQVLSRSTIMEKV 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDET 229 + P ++VF+ LR+KL G + TV G GYVLRE A D Sbjct: 193 WGYDFGPSSNSLEVFVSYLRRKLEAD-GEPRLLHTVRGVGYVLRELPAADRA 243 >gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K + I+L L+++ + ++ + +E+ + + I+DL + G+ Sbjct: 2 INILIVDDEKEIVDLIDLYLRNKGYCIFKAYDSDKALEILNLEKINLAIMDLMMPGTDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R + + P+ I+S DKV GL GADDYI+KPF+ EL+AR+ A +RR Sbjct: 62 DLIKKIR-STSNIPIIIISAKCENHDKVIGLDIGADDYITKPFDPLELIARVNAQLRRCY 120 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++I + DL ++ D V G + LT KE++++EL KN LTK+ Sbjct: 121 LLNLEDNNENIIKSRDLILDKDKIIVTKGGKEVFLTLKEFKLLELFMENKNKVLTKQRIF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I V I LR K+ + YI+T+ G GY E Sbjct: 181 ENIWKEEYLYDDNVIMVHISNLRDKIEDNNKENKYIKTIRGIGYRFEE 228 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A +EL LK E F V G G+EL + +FD I+LD+ L + G E Sbjct: 4 KILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + P+ +++ + D+V GL +GADDY+ KPF EEL+ARIR+I R Sbjct: 64 VCRRIR-KTSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +++DA V + ++I LT KE+ +++LL +N T+E L ++ Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL YIETV G GYV+R Sbjct: 183 FDTEVETNVVDVYIRHLRTKLQ--TEHTPYIETVRGVGYVMR 222 >gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 240 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ + ++L+ F ED + D I+LD L + G E Sbjct: 6 ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + P+ +L+ EDKVRGL+ GADDY++KPF+ +ELVARIRA+ R Sbjct: 66 ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRRSG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + I GDL ++ + + + ++ ++ E+++++ + + L+ ++ Sbjct: 126 KINDLAQITLGDLVLDTEQHRLSIGDKQLEVSPTEFRLMQFFMTHPDKVFNRTQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L G ++ ++TV G GY Sbjct: 186 GRSVYIEERTVDVHIRRLRKILGEH-GREDLVQTVRGFGYRF 226 >gi|304309688|ref|YP_003809286.1| Putative heavy metal response regulator precursor [gamma proteobacterium HdN1] gi|301795421|emb|CBL43619.1| Putative heavy metal response regulator precursor [gamma proteobacterium HdN1] Length = 224 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ ++ L F G G +D IILD+ L G+ Sbjct: 1 MKILLVEDEPKTGDYLKQGLCEAGFPTDWVQDGISGSHQALHETYDLIILDVMLPGRSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R A PV L+ + D+VRGL++GADDY+ KPF EL+ARIR ++RR R Sbjct: 61 EVLQDIRSAGKDMPVLFLTARDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLRRER 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + RI LT +E+ ++ LL R+ L + + + ++D Sbjct: 121 SREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLALLMRRRGEILPRALIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +++V + +LR K+ + I TV G GY L E Sbjct: 181 MNFESDTNVVEVAVRRLRAKI-DDPFEPRLIHTVRGMGYTLEE 222 >gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758] gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A +EL L++E ++V G++ +E + D ILD+ L DI GF Sbjct: 1 MNILVVDDEKEIADVVELYLQNE-YHVLKFYTGQEALECIEKTNVDLAILDVMLPDIDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 60 TILRKIR-EKYTFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRRYT 118 Query: 121 GHAQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++ ++ + LT E++++ +L + ++ + Sbjct: 119 QYNDGKKSDSENIIDFAGLLLNKESHECIYNEQSLPLTPTEFEILWILCENRGKVISSQR 178 Query: 174 FLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I LR+KLS G + I+TVWG GY + E Sbjct: 179 LFEEVWHEEYLKNSNNTVMVHIRHLREKLSKPTGKSDLIKTVWGVGYKIEE 229 >gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 14 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 74 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALEMGPTEFKLLHFFMTHPERVYSREQLLNYV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDRMVQTVRGTGYRF 235 >gi|319403893|emb|CBI77479.1| two-component response regulator [Bartonella rochalimae ATCC BAA-1498] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G + +D +++D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHTADIAYDGDTGYTFAETVNYDVMVIDRMLPYRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR I TPV ILS + ++D+V GL++G DDY++KPF EL+AR+ R++ Sbjct: 61 SIVTELRAKGIETPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGDKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPEK 226 >gi|315105932|gb|EFT77908.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 236 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + + ++LDL L G + Sbjct: 10 ILVVDDDTALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ + + V+GL +GADDY+ KPF EL+ARIRA +R Sbjct: 70 CQDIRRESGV-PIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL+++ A V++ G I LT EY ++ ++ N ++E L ++ Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235 >gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae] gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A S PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GDL V+L + G RI LT KE+ ++ELL R+ L+K + + + Sbjct: 121 SSLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +I+V I +LR K+ + + T G GY+L +A+DE Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDF-EAKLLHTCRGMGYML--DAQDE 227 >gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CMR15] Length = 226 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 1 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARGGEPALLLLDLMLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 61 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQPVP-LLKTVRGLGYRL 222 >gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G E+ Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITG-EI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 66 FIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S V N ++ V+V G I LT KE++++ELL TK + Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+V I LR K++ +YI+T+WG G+ + Sbjct: 186 WKEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228 >gi|169835992|ref|ZP_02869180.1| DNA-binding response regulator [candidate division TM7 single-cell isolate TM7a] Length = 218 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 10/226 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL+ED+ A+ E L+ F V GE+ +E KF D IILD+ L + Sbjct: 1 MKSQILLVEDEPAVRQGTEQFLRQRGFTVVTATSGEEALE--KFTGADVIILDIMLPGMS 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EVL +R PV +L+ + ++ ADDY+SKPF+ L RI A++RR Sbjct: 59 GIEVLHRIR-QTSDVPVLMLTALHDEPTQIASFDELADDYMSKPFSLVILEKRIGALLRR 117 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++L G SV+ A G HL KE Q+++LL N +++ ++ L Sbjct: 118 QQSVKKTLWRRGLASVDFAAYQGFYDGTDAHLKPKEVQLLKLLVDNPNMVWSRQAIIDKL 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + P ++IDV+I LRKKL I TV G GY E+ Sbjct: 178 WRDDEVPFDRVIDVYIKNLRKKLHLD-----CIITVKGVGYRYEES 218 >gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17] gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17] Length = 235 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E F + GE ++ D I D+ + + G E+ Sbjct: 5 IALVDDDRNILTSVSIALQAEGFLTRIYADGEAALKALIDNPPDLAIFDIKMPRMDGLEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D+ GL GADDYI+KPF++ L+ARIRAI+RRS G Sbjct: 65 LRRLR-EKSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSEGS 123 Query: 123 AQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +Q+ G L+++ V +G + LT E+ ++E L+ R T+ Sbjct: 124 SQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRTRN 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ Y + + ID I +LR+K + IET++G GY E Sbjct: 184 QLMDAAYQDDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGYRFSEE 235 >gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+KA+ + +L + V + + G +G+ + F I+LD+ + I G+ V Sbjct: 5 ILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIMMPKIDGYAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +L+ M E +V+ + ADDYI+KPF+ + ++ RI A++RR++ Sbjct: 65 CEIIR-KNSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKEK 123 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++ + ++ + TVEV G I+LT E+ ++E+ +N LT++ +N ++ Sbjct: 124 VENHNIFISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + K +++ + LR+KL I+TV G GY Sbjct: 184 YDFTGDEKAVNIHVMNLRRKLDID-----CIQTVRGVGYKFESE 222 >gi|170758675|ref|YP_001786359.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405664|gb|ACA54075.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 240 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG + E D IILD+ L D G+ Sbjct: 10 KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRAKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N+ + +G I L KE +I + N ++KE Sbjct: 129 YVENANEEKNILSFGPFELNISKGEFKKEGSLIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235 >gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 231 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 10/232 (4%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 M+ +L++ED+ A+A I + L+ F + G D I+LD L Sbjct: 1 MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWMLPG 60 Query: 57 IPGFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 G + R R + P+ +L+ DKV GL +GADDYI+KPF+ +EL+ARIRA Sbjct: 61 ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120 Query: 115 I-VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + RR+ Q + G+L ++ A V QG + + E++++ L ++ Sbjct: 121 VLRRRAPEQVQDKVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQ 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++ E + +DV + +LR+ L A IETV G GY A Sbjct: 181 LLDKVWGDHVFIEERTVDVHVKRLRESLGVAG---VLIETVRGAGYRFSAQA 229 >gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G E+ Sbjct: 7 ILVVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITG-EI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 66 FIDEIRKIKNTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S V N ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + I+V I LR K++ +YI+T+WG G+ + Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228 >gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] Length = 231 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 109/226 (48%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + I + L+ + + L + D ++LD + G E Sbjct: 7 VLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASGIEF 66 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R LR + P+ +L+ ++K++GL++G DDYI+KPF+ ELVAR++A+ R + Sbjct: 67 ARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLRRTT 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L+++ + V + I L E+++++ ++ ++ L+ ++ Sbjct: 127 PKGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYSRSQLLDMVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G E + +DV I +LRK L + ++TV G GY N Sbjct: 187 GGNVYVEERTVDVHIRRLRKALGD--RHDYLVQTVRGTGYRFSSNV 230 >gi|296876253|ref|ZP_06900306.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432758|gb|EFH18552.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 217 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + + L + ++ G++ ++L D ++LD+ L + G Sbjct: 1 MKILIVEDEVLIREGMSDYLMECGYEIFEAGDGQEALDLFHREAPDLVLLDIQLPILNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R S PV +L+ + K+ AD Y+ KPF+ L RI AI ++ Sbjct: 61 EVLKTIR-KTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKK-- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+ V+ ++ T + G I + KE +++E L + T+ L+ ++ Sbjct: 118 LQPSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E P ++IDV+I +LRKKL I TV GY L Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLELD-----CIVTVRNVGYKLE 215 >gi|256370488|ref|YP_003107999.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM 4915] gi|256000651|gb|ACU49050.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM 4915] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRRLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128 Query: 123 AQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 129 DGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 LMDAAYDEQIYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238 >gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT] gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT] Length = 234 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A+ I+ L EN++V + G++G+E K +D IILD+ L +I GF Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ + P+ ILS DKV+GL+ GADDYI+KPF+ EL AR+ ++R +G Sbjct: 64 VCKNIRL-LSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + D V + I LT KE+ ++ +L+ ++ TK+ Sbjct: 123 YNKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++++ + I V + LR+KL + YI+TVWG GY Sbjct: 183 ENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKF 228 >gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + I+ L ++ + V V G +G++ FD I+LD+ + ++ GFE Sbjct: 12 HILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V + +R + P+ +L+ + +D+++G G DDYI+KPF+ L+ R+ A+ R + Sbjct: 72 VAKMIRSQ-SNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNN 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + V +L V+ DA V V + LT KE+++++LL + LT++ + ++ Sbjct: 131 QSTDNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ID + +RKKL YI+TV G GY + E Sbjct: 191 YEYAGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 228 >gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334] Length = 232 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +E+ K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +N + V+V + LT K ++++ LL+ +K ++ Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVGLDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + ++V I LR++L+ A + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227 >gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 249 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD LA + L+ + + V + G + + DA++LD+ L D G Sbjct: 23 RVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGLT 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR L + V +L+ ++ED++ G+ +G DDY++KPF+ EE++AR+R ++RR+ Sbjct: 83 VLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAGM 142 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q GDL ++ DA+ V G I L+ EY+++ L L+K L+ Sbjct: 143 ARQPADGPRLTVGDLVMDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +++++I LRKK+ AG + I TV G GYVL+ Sbjct: 203 VWSYDFGGRAHVVELYISYLRKKV--DAGREPMIHTVRGAGYVLKP 246 >gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + G++ + L +D +++D + + G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR ++TPV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTEN-GLPDPIKTIRGFGYVIQE 229 >gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 23/239 (9%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDI 57 M+ IL+++D+ + +E +L++E F+V + GED + L + I+LD+ + ++ Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+E+ +R P+ LS DKV G + GADDYI+KPF+ EEL+ARIRA +R Sbjct: 61 SGYELCSQIRRE-WDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLR 119 Query: 118 RSRGHAQSLI---------------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 R + DL ++ + +V V +I L+ KE+Q++ L+ Sbjct: 120 RYERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLA 179 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 T+E + ++ + + V I LR+KL + +I+T WG GYV Sbjct: 180 ENAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLET---ERQFIKTQWGTGYVF 234 >gi|51473272|ref|YP_067029.1| transcriptional activator protein CzcR [Rickettsia typhi str. Wilmington] gi|51459584|gb|AAU03547.1| transcriptional activator protein CzcR [Rickettsia typhi str. Wilmington] Length = 237 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 130/223 (58%), Positives = 169/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ +A+ IE+ L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MKVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKIGIYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VEV G +IHLT KEY ++ELL +R+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKIHLTNKEYSILELLIIRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 219 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 218 >gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217] gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E +V + G D + +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR A TPV L+ + S++++V GL +GADDY+ KPF EL AR+ A R Sbjct: 61 TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ G L ++L A+ V + H I L +E+ ++E L RK T+ M L ++ Sbjct: 121 ALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ I +LR K+ + + I+TV G GY + Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DRPFATDLIKTVRGAGYRI 221 >gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] Length = 234 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 9 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 68 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 69 FIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 128 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LN++ Sbjct: 129 SPMAVEEVIEMQGLSLDPSSHRVMAKEKALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 189 WGTNVYVEDRTVDVHIRRLRKALEPE-GHDKMVQTVRGTGYRF 230 >gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 268 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCYILML-TARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26] gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932] gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55] gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34] gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79] gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196] gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291] gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58] gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196] gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 232 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A IE+ L +EN+ VY G D + EFD ILD+ L + GF Sbjct: 4 KILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVNGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF ELVAR++A +RR + Sbjct: 64 LCQKIR-EKYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122 Query: 122 HAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ SL +LS N + G + LT E+ ++ +L K + + E Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182 Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ I V I LR+KL + YI+T+WG GY + Sbjct: 183 NLFHAIWKDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGYKI 232 >gi|90962136|ref|YP_536052.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90821330|gb|ABD99969.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 239 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 16/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M++L+IED+K++ + + + E ++V G +E K E+D I LDL L + Sbjct: 1 MKLLMIEDNKSVCEMMSMFFEKEKWDVEYAYDGISAVEKFKEKSDEWDMITLDLNLPGMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117 G +V +R + P+ IL+ S D++ GL+ GAD+Y+SKPF+ L+ARI+A+ R Sbjct: 61 GMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKALHRR 120 Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 +++ + T +N + + +RI LT KE+ ++ +L+ + Sbjct: 121 AQISALGSSKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAKKPR 180 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++E L ++D + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 QVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDTEA 238 Query: 227 D 227 + Sbjct: 239 E 239 >gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator protein [Vibrio vulnificus YJ016] gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator protein [Vibrio vulnificus YJ016] Length = 231 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K + L + V + G DG+ +D I+LD+ L + G+ Sbjct: 1 MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR +++ TPV +L+ +ED+V+GL+ GADDYI KPF EL+ARIR +++R + Sbjct: 61 QVLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS +L ++L + V I LT KE+ ++EL + +++ + + Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + +IDV + +LR K+ + I T G GYVL E Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKV-DKPFEPKLIHTERGMGYVLEEREP 227 >gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ LA IEL K EN+ V V G G+ ++FD I+LDL L ++ G E Sbjct: 3 KVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K + P+ +++ I DKV GL GADDYI KPF EEL+AR RA++RR Sbjct: 63 VCKRLRTQKDT-PIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSD 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + ++ A V Q ++ LT E+ ++ LL+ KN L +E L+H+ Sbjct: 122 ENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E E ++DV+I LR KL IETV G GYV+R+ Sbjct: 182 WGYESEVETNVVDVYIRYLRNKLKRIDKQ-KLIETVRGVGYVIRQ 225 >gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 223 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V GE G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPWDAVILDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILREWRQQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G++ + + +V +G I L +E ++EL + LT+ LY Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++V I LRKKL + +I T+ G GY L D+ Sbjct: 181 WDADVSSNAVEVHIHHLRKKLGS-----TFIRTLHGVGYTLGAAECDQ 223 >gi|229059543|ref|ZP_04196925.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603] gi|228719826|gb|EEL71420.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603] Length = 229 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L+ + V + GE G++ ++D +ILD+ L I G+E Sbjct: 3 RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVILEDYDLLILDIMLPGIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ K P+ ++S DK++GL GADDYI KPF+ E+VAR+ A + R Sbjct: 63 ICKQVRLKKDI-PILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 D + A+ V + G + LTGKE+ ++ ++ N +K+ Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +R+K+ K+YIET+WG GY Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227 >gi|225869229|ref|YP_002745177.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702505|emb|CAX00433.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 112/225 (49%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + E L+ + V G +EL ++D II D+ + ++ G++ Sbjct: 4 KILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIITDVMMPNMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + K P ++ +S DK+ L GADD+ISKPF+ ELV R++ I+ R G Sbjct: 64 FIGEVLLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNRIYG 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A V GDL ++ + V V + LT K + ++ +L+ N +K ++ Sbjct: 124 KANQADSLVIGDLVMDHSTRRVTVANQELTLTNKAFDLLWILANHLNHVFSKTELYERVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + + ++V I LR L+ + + I+TVWG GY L E Sbjct: 184 EEEYLDDTNTLNVHIHSLRNDLAKYSTEQTPTIKTVWGLGYKLEE 228 >gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 246 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + + L L+ E + V G + + D ++D+ + ++ G+++ Sbjct: 13 ILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIMMPELDGYQL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R PV ILS + DKV GL GADD+ISKPF+ E+VARI+A +RR Sbjct: 73 IARIR-ENHRLPVIILSAKNGDVDKVTGLGLGADDFISKPFSPIEVVARIKAQLRRYYEL 131 Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 V G L+++ +A + + I L EY+++ LL TK Sbjct: 132 MGAEPAQRSEMLKTVCGSLTLDHEACVLYKRSEAITLGPLEYKLLRLLMEAPGRIFTKRQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + + V I +LR KL + + T+ G GY L Sbjct: 192 IYENVWNEPYLEDSNTVMVQISRLRDKLEDDPREPRLLITIKGLGYKLVP 241 >gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 247 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 233 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ A+A I + L+ + V + + D +ILD L G Sbjct: 3 RVLVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWMLPGQSGLA 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + R + PV +L+ + DKV GL +GADDY++KPF+ EL+ARIRA+ R+ Sbjct: 63 LAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLRRK 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S + G L ++ + V + + E++++ L ++ L+ + Sbjct: 123 APEALDSAVELGVLRLDPSTRRVARGEQEVKIGPTEFRLLHFLMTHPERVHSRAQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV + +LR+ L+ A IETV G GY L Sbjct: 183 WGDHVFIEERTVDVHVKRLREALAPVACS-TMIETVRGAGYRL 224 >gi|315651418|ref|ZP_07904443.1| response regulator [Eubacterium saburreum DSM 3986] gi|315486377|gb|EFU76734.1| response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A +E+ L S+ + V+ + EDG+ + + + ILD+ + + G Sbjct: 4 INILVVDDEKEIADLVEIYLVSDGYTVFKANNAEDGLAIIEKEDIHLAILDIMMPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +LS S+ DK+ GL +GADDY++KPFN EL AR+++ +RR Sbjct: 64 EMCKKIR-ESYNFPIILLSAKSADIDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYT 122 Query: 121 GHAQSLIVTGD----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + IV + +N D V + I LT E+ ++ LL+ + Sbjct: 123 QLNPNNIVVEKEDPNEIRLKGMIINKDNHKVIIDDKEIKLTPIEFDILYLLASNAGKVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ + + V I +LR K++ A I TVWG GY + Sbjct: 183 TDEIFERVWNEKVYEANNTVMVHIRRLRGKMNEDARVNKIITTVWGVGYKIE 234 >gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 230 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+ + IE+ LK+E ++V G D ++ + E IILD+ + ++ G Sbjct: 6 VLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEVHLIILDIMMPNMDGITA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS + DK+ GL GADDY++KPF+ EL+AR+++ +RR Sbjct: 66 TFKIREERNI-PIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L ++ +AK V ++G + LT EY++ ELL + Sbjct: 125 GTYSEGATKVEIDGLVLDEEAKEVVLEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+ V I K+R+K+ Y++ VWG GY + + Sbjct: 185 VWNEEAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230 >gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI R+ Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122 Query: 121 GHAQSLIVTGDLSV---NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6] gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6] Length = 232 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +EL K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 IGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI G+L +N + V++ + LT K ++++ +L+ +K ++ Sbjct: 125 GETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKVWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224 + ++V I LR++L+ + + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228 >gi|254975306|ref|ZP_05271778.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092696|ref|ZP_05322174.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314435|ref|ZP_05356018.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517111|ref|ZP_05384787.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650217|ref|ZP_05397119.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683335|ref|YP_003214620.1| two-component response regulator [Clostridium difficile CD196] gi|260686931|ref|YP_003218064.1| two-component response regulator [Clostridium difficile R20291] gi|260209498|emb|CBA63052.1| two-component response regulator [Clostridium difficile CD196] gi|260212947|emb|CBE04223.1| two-component response regulator [Clostridium difficile R20291] Length = 241 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 15/234 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+I+D+ + +E +LK E N +Y ++G+EL K D I+LD+ L D G+ Sbjct: 4 RVLIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIMLPDGEGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R ++P+ LS + DK+ GL G DDY++KPF+ +E+ R++A +RR Sbjct: 64 DICKEIR-KTSNSPIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLS 122 Query: 121 GHAQSLIV-------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + G +N + G I L+ KE +++ L + +N Sbjct: 123 YFSDVQNESKNLNKNEEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++KE + ++ I V I K+R+KL + YI T+ G GY L Sbjct: 183 IISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236 >gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ + +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVLR +R A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LR K+ + I T G GY++ Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFA-PKLIHTARGMGYMM 221 >gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 EDL933] gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli O157:H7 str. EDL933] Length = 219 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|26986774|ref|NP_742199.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148545300|ref|YP_001265402.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031064|ref|YP_001666295.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719233|ref|YP_001746921.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|325272092|ref|ZP_08138528.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|24981367|gb|AAN65663.1|AE016193_4 DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148509358|gb|ABQ76218.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857552|gb|ABY95959.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757236|gb|ACA70552.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|324102788|gb|EGC00199.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L + V + G D + L + ++LD+ L I G+ Sbjct: 1 MRVLVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L +R + + + I DK++GL GADDY+ KPF EL+ARIR+ R Sbjct: 61 DLLETIRKTSRVRIIML-TARGRINDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGD 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DL ++ V G RI LT KE+ ++ LL R LT+ ++ ++ Sbjct: 120 ELVEKSSLKIADLELDSVRHRVFRGGTRIDLTTKEFALLHLLMSRTGEALTRSQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + I T+ G GYV E A Sbjct: 180 DMNFDCDTNVIDVAIRRLRSKI-DDPFETKLIHTLRGVGYVFEERA 224 >gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 237 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A ++L L+ E ++V ++ G +G+ + +D +ILD+ L + G E Sbjct: 12 RILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPSLNGME 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R S PV +L+ + DKV GL GA DYI+KPF EEL+ARIR + + Sbjct: 72 VLRRIR-QVSSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L+++ + V + LT KE+++++ L L KN +T+E L + Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++DV+I LR K+ I TV G GY +++ Sbjct: 191 WGYDYLGDTNVVDVYIRYLRNKIDQRFED-KLIYTVRGMGYQIKD 234 >gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 227 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+++L + +++ L EN+ V + G+D +EL + D ++LDL L DI GF Sbjct: 1 MKILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V+ ++ P+ +LS + I D++ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++I G + + D + V + + T E++++ L+ T+E Sbjct: 121 KAKLLSNKKQVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + +D+ I ++RKKL + ++ I+T++G GY Sbjct: 181 LLDTIWGYDFSGNTRAVDIHIKRIRKKLLD---HEDAIKTIYGVGYRFE 226 >gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] Length = 227 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++EDD+ + I L L S + V D D + I DL L + G + Sbjct: 4 RIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ILS DKV GL SG+DDY++KPF EL AR+R+++RR Sbjct: 64 AIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHVT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+V+ + V++ ++ LT KEYQ++ L K+ + +E LN ++ Sbjct: 124 SDIIRTKH--LTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I LR KL++ G YI+T+ GY E Sbjct: 182 DFIGESRALDVHIRALRSKLNDD--GHKYIKTIRSVGYRFYEEG 223 >gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217] gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 243 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L++ N+++ + GE G+ + +DA I+D+GL + G Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR ++S P+ +L+ S +DKV GL +GADDY++KPF+ EEL+AR++A++RR+ Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A SL+ G SVNL + V+ ++L+ EY++ E L L +K + H+YD Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+VFI +LRKKL IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYQLIETLRGQGYRLNP 222 >gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 226 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ + L + V + G G + ++D +ILD+ L G+ Sbjct: 1 MRILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR STPV L+ + D+VRGL+ GADDY++KPF+ ELVAR+R+I+RR + Sbjct: 61 TLLHNLR-RTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + QG I LT KE+ ++ LL ++ L + + ++D Sbjct: 120 PRETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDSAIRRLRSKV-DDAYEPKLIHTVRGMGYVLE 220 >gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 249 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++D+ + + L+ F V + G ++ + D ++LD+ L D+ GF Sbjct: 16 HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++TP+ L+ + DKV+GL G DDY++KPF EE++ARIRAI+RR+ Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 DL ++ DA V + L+ E++++ L L ++K L+H+ Sbjct: 136 IENQDDGVVRVADLILDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227 ++ + I++ +I LR+K + A G I+T G GY+LRE + Sbjct: 196 WEYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLREPKAE 249 >gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + E V G + + +C+ +FDAII+D+ + + GF Sbjct: 3 KILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVMMPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR-----IRAIV 116 + +R PV +LS DK+ G + G DDY+ KPF+ +E++AR R Sbjct: 63 ACKEIR-KTKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIISRNRQ 121 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G L V+L ++V V G + LT KE ++ L +N L++ L Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +D I LR L K+ I T+ G GY Sbjct: 182 DVWGYDFYGDDRTVDTHIKMLRSSLGKY---KDAIVTLRGVGYKFE 224 >gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] Length = 231 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 9/231 (3%) Query: 1 MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 MR IL+++D+ + + L++E + V LG + + L +E D I+LDLGL Sbjct: 1 MRTNKKTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 D+ G E+LRAL + V +LS + DKV L GA DY++KPF+ EL ARIR Sbjct: 61 DMDGEELLRAL-PMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVC 119 Query: 116 VRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +RR + V G+L ++++A T + +HLT E++++ L+ +T Sbjct: 120 LRRGGGDGESPPTRYVFGELWIDMEAHTAGLAAQDLHLTPTEFKLLAYLARHAGKVVTHG 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + + + I KLR+K+ Y+ T G GY + Sbjct: 180 QLLKAVWGKQSQGQEHYVRIHIHKLRQKIEQDPARPRYLRTETGIGYRFAD 230 >gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 228 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 +++L++ED++ +A ++ L + V+ D G DG+ L ++AII+D L I G Sbjct: 4 IKLLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPGGIDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ALR + P+ ILS M+ ++D+++GLQSG DDY+ KPF+ EL+AR+ AI+RRS Sbjct: 64 LSIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRS 123 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + V G+L +++ V G I L +E+ ++E L N +T+ M L ++ Sbjct: 124 RELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +P+ ++DV I KLR+KL ++T+ GY+L + Sbjct: 184 WDYDFDPQTNVVDVHISKLRQKLDID-SLPPMLKTIRNAGYMLTDE 228 >gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 222 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L++ + V G + ++ +FD +ILDLGL G Sbjct: 3 RILIAEDETRIAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLPGKAGLV 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R PV IL+ I DKV GL+SGADDY++KPF EEL+AR+RA +R + Sbjct: 63 VLEEMRGRGERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLRDTGN 122 Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G++S++L + V G + L+ +E+ + E +++E L+ + Sbjct: 123 GRTQEQLVLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LR+KL + IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYVGYLRRKL-----NTDRIETVRGMGYRLR 221 >gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437] Length = 237 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 12/232 (5%) Query: 1 MR-ILLIEDDKALAHSIELMLKSEN-FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR IL ++DD+ + H I + E+ F V GE+ +++ D +ILD+ L + Sbjct: 12 MRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLPGLD 71 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E R +R P+ +LS DKV GL+ GADDY++KPF+ EL+AR++A RR Sbjct: 72 GMETCRRIRQQHTV-PILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRR 130 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +G LS+N V + G ++ L+ KE+Q++ L+ N L++E Sbjct: 131 VERMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLY 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ ++ + V I +RKKL I+T+WG GY +++ Sbjct: 191 QKIWGQEF-GDLNTVTVHIKNIRKKLGRD-----CIKTIWGVGYKFAWESEE 236 >gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E + E ++V T G++ + L D ++LD + G E Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K P+ +L+ S +D+VRGL++GADDY++KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRRV 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GDLS++ A V + I + E++++ ++ L+ + Sbjct: 125 RPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + E++ +DV I +LR+ ++ G + + TV GY L Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAIAI-PGAPDPVRTVRSAGYALE 227 >gi|313207136|ref|YP_004046313.1| two component transcriptional regulator, winged helix family [Riemerella anatipestifer DSM 15868] gi|312446452|gb|ADQ82807.1| two component transcriptional regulator, winged helix family [Riemerella anatipestifer DSM 15868] Length = 225 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+D+ + I LK E + V+ + G +GIE K I+LD+ + D G E Sbjct: 5 RILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDKDGIE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +R + LS ++ G Q+GA+DYI K + L++++ A++ + Sbjct: 65 TCQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKVNALMNLT 124 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G L ++ D V L KE+ ++ LL+ +E L Sbjct: 125 QQVEEKNKILKIGHLIIDRDNFKVTKGDESFILPKKEFDLLNLLASNTEKVFKREEILEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + IDV I +LR+KL + I+T+ G GY L Sbjct: 185 VWGNDVVVGERTIDVHIRRLREKLGS-----KSIQTLKGIGYKL 223 >gi|254292563|ref|YP_003058586.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041094|gb|ACT57889.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 230 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S++ ++E + V GE ++ + + ILD+ + + G E+ Sbjct: 4 IALVDDDENIVESLKAFFEAEGYTVRAYHDGEAALQGLAEHPPELAILDVKMPKMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR LR + P L+ D+V G GADD+I KP + L R++A++RRSR Sbjct: 64 LRRLR-QTSNLPAIFLTSKDDEIDEVVGFNIGADDFIRKPCSMRLLSERVKAVLRRSRGA 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + IV G L+++ + +G + LT E+ +++ LS R +++ ++ Sbjct: 123 GVSEEGDKKPIVRGSLTLDPNRHACTWKGEVVRLTVTEFLILQALSTRPGYVKSRDQLMD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 YD + + + ID I +LRKK + + IET++G GY +E Sbjct: 183 AAYDDQVYVDDRTIDSHIKRLRKKFRDQDDEFDSIETLYGVGYRYKE 229 >gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD A++ + L+ E + V V G + L D ++LDLGL + G E Sbjct: 3 RVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGLPGMDGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 62 VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGTP 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + +++++ + ++LT KE+ ++ +L +T++ + ++D Sbjct: 122 DLGNGVHG--VRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQLMREVWDT 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 K +D+ I LRKKL + A +I TV G G+ Sbjct: 180 TWWSSTKTLDMHISWLRKKLGDEASRPRFITTVRGVGFRFE 220 >gi|300768408|ref|ZP_07078309.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494023|gb|EFK29190.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 242 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 17/242 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M++L+IED+K+++ + + K E ++ + G + +E+ +D + LDL L Sbjct: 1 MKLLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEMFNEDVDGWDMVTLDLNLPGKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R A + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 120 Query: 119 SR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRK 165 + + + T +N + + +I LT KE+ +++ L+ + Sbjct: 121 ADLAKTTLADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIRDLTPKEFDLLKTLAQKP 180 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E L ++D + + +D I KLR+K+ A G I+TVWG GY ++ Sbjct: 181 RQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKA--GPQIIQTVWGVGYKFDDSG 238 Query: 226 KD 227 D Sbjct: 239 VD 240 >gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 225 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ++ I L+ FNV + E+ E+ + FD II+D+ L I G Sbjct: 1 MQILLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVMLPGIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R K TP+ +LS ++ EDK+ L SGADD++ KPF+ +EL++RI A+ RR++ Sbjct: 61 QLTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKT----VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q ++ + NL V G +I L+ KE++++ L+ + +++ M LN Sbjct: 121 YQKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++DV+I LR K+ +I TV G GY+ + Sbjct: 181 AVWGINFDNNTNVVDVYISYLRNKI--DESKHQFILTVKGTGYMFQ 224 >gi|168208958|ref|ZP_02634583.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170712748|gb|EDT24930.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 234 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L VN D K V + G + +T E+++++LL + E Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] Length = 241 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N E + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMEERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 238 >gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] Length = 228 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL++D+ + + L E + ++ + G++ ++ K + II+D+ + ++ G Sbjct: 6 IRILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMPEMDGM 65 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R + + L+ + +V G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKVKALLRR 125 Query: 119 SRGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + GD+ +N + V G I L KE+++ LL+ + +E L Sbjct: 126 IKEEESPKSETLIIGDIEINREEYNVIKDGVEIILPRKEFELFYLLASKPGKVFKREEIL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + IDV I KLR+K+ + Y +T G GY Sbjct: 186 DKVWGSEVVVGGRTIDVHIRKLREKIGD-----EYFKTTKGIGYKFE 227 >gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] Length = 221 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 4/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+ED+ A + L+++ F V + GE+ + L D I+LD L ++ G EV Sbjct: 1 MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWMLPNVSGIEVC 60 Query: 64 RA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 R R P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA R Sbjct: 61 RQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRTRP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 121 AAMGARLEFDDIVLDAETHRVTRADQSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L G + + TV G GY L Sbjct: 181 RDIYVDTRTVDVHIGRLRKALCQYGGD-DPLRTVRGAGYAL 220 >gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 231 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 3/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR S PV +LS +S KV L GA+DY++KPF +E +AR+RA++R+ Sbjct: 67 LRELR-EWSSVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L+V+ + V ++G + LT KEY ++ LL+ +T++ L ++ Sbjct: 126 GGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + + LR+KL + +I T G GY L Sbjct: 186 PSHVEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAPV 230 >gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 238 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ + + + L+ E + V G+DG+E K+ ++ ++LD+ L + G Sbjct: 4 RVLVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDYSCVLLDVHLPILNGKS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR +TPV I+S + + +V G + GADDY+ KPF+ EL+ RI AI++R++ Sbjct: 64 ILSELR-KTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++++ V V+ + LT KE+ ++ L+ + + Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDTEVLLTPKEFDLLLFLAKSPDKAFRRNE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L ++D +++ +D I ++RKK + I TVWG GY Sbjct: 183 ILRAVWDYDFYSDLRTVDTHIKRVRKKFDKISPKVSKMIVTVWGIGYKF 231 >gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 223 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ + E NV G + IE CK EFD I++D+ + + GF Sbjct: 3 KILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKCKEQEFDVIVMDIMMPRLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 + ++ PV +LS DK+ G + G DDY+ KPF+ +EL+AR+ I RR R Sbjct: 63 SYKEIK-KINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQR 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ L ++LD + V V G ++ +T KEY ++ L+ +N L+++ L+ ++ Sbjct: 122 IIENAVLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D I LR + + + +I TV G GY Sbjct: 182 YDFYGDDRTVDTHIKMLRNSIKDY---RKFIVTVRGTGYKF 219 >gi|270291051|ref|ZP_06197274.1| two-component system, OmpR family, response regulator [Pediococcus acidilactici 7_4] gi|304385329|ref|ZP_07367674.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270280447|gb|EFA26282.1| two-component system, OmpR family, response regulator [Pediococcus acidilactici 7_4] gi|304328536|gb|EFL95757.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 240 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 15/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M+IL+IED+K+++ + + K E + V G +E+ K ++D ++LDL L Sbjct: 1 MQILMIEDNKSVSDMMGMFFKKEKWKVTFAYDGVKALEIFKADPQQWDIVLLDLNLPGKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV LR + P+ +L+ S D+V GL+ GAD+YI+KPF+ L+ARI+A+ RR Sbjct: 61 GMEVAAELRRTSRTVPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALHRR 120 Query: 119 SRGHAQSLI----------VTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 + + T L ++ + V + G I LT KE+ +++ L+ + Sbjct: 121 VLMNKHNSNAEQQAGKFDVRTAHLKISTATREVYLDGKLISDLTPKEFDLLKTLAQKPMQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++E L ++D + + +D I KLR+KL G ++TVWG GY ++ D Sbjct: 181 VFSREQLLQMVWDYEYYGDERTVDAHIKKLRQKLEAV--GPQVVQTVWGVGYKFDDSKID 238 Query: 228 E 228 E Sbjct: 239 E 239 >gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter xylosoxidans A8] gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter xylosoxidans A8] Length = 229 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L ++ V + G DG+ L +D I+LD+ L + GF Sbjct: 1 MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A+R + TP+ +L+ ++ED+VRGL+ GADDY+ KPF EL+AR++A++RR R Sbjct: 61 GVLAAVR-EQKDTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L + + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 120 SQEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV + +LR KL + + TV G GYVL Sbjct: 180 MNFDSDTNVIDVAVRRLRSKL-DDPYDTKLLHTVRGMGYVLE 220 >gi|289428091|ref|ZP_06429794.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|289158691|gb|EFD06892.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|313820661|gb|EFS58375.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823192|gb|EFS60906.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313825530|gb|EFS63244.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|314924865|gb|EFS88696.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314978112|gb|EFT22206.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314986186|gb|EFT30278.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989598|gb|EFT33689.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315084809|gb|EFT56785.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315088297|gb|EFT60273.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|327327165|gb|EGE68942.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL096PA3] gi|328754980|gb|EGF68596.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|332675749|gb|AEE72565.1| DNA-binding response regulator MtrA [Propionibacterium acnes 266] Length = 236 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + + ++LDL L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +L+ + + V+GL +GADDY+ KPF EL+ARIRA +R Sbjct: 70 CQDIRRESGV-PIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL+++ A V++ G I LT EY ++ ++ N ++E L ++ Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++++V + +LR K+ A I TV G GY + ++ Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235 >gi|163738248|ref|ZP_02145664.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163740186|ref|ZP_02147580.1| DNA-binding response regulator ChvI [Phaeobacter gallaeciensis 2.10] gi|161386044|gb|EDQ10419.1| DNA-binding response regulator ChvI [Phaeobacter gallaeciensis 2.10] gi|161388864|gb|EDQ13217.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 233 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I L++DD+ + S+ + L++E F V + G+ ++ D +LD+ + + G + Sbjct: 3 KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDIKMPRMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L+ LR K PV L+ D+V GL+ GADDY+ KPF++ LV RIRA++RR Sbjct: 63 LLQRLR-QKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ G+L ++ +V +G + LT E+ +++ L+ R +++ Sbjct: 122 ISGDAVATTTENKVMERGNLRMDPLRHSVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ YD + + + ID I +LRKK+ +A + IET++G GY E Sbjct: 182 QLMDVAYDDQVYVDDRTIDSHIKRLRKKMRSADSEFSAIETLYGIGYRYNEE 233 >gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K L IE L E+F Y GE +E+ + D I+LD+ L + G+E Sbjct: 4 KILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINLPKMNGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +++ S D+++GL GADDYI+KPF+ + L +I+ +++ Sbjct: 64 VCQNIRKESNI-PIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKMLKIDEN 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + S + + + V I LT +E Q +E L K ++++ LN ++ Sbjct: 123 SSYKFNNL---SFDFRSGELIVNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +++D + +LRKKL + + + I+TV G GY+ EN Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS---DMIKTVRGMGYIFDEN 219 >gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 219 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 218 >gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 242 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 17/235 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +A SI +E + V + G G+E K Y D I+LD+ L I G E Sbjct: 11 RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V R ++ P+ +L+ D + GL GADDY++KPF+ EL+AR++A++RR Sbjct: 71 VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130 Query: 120 ----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A+ + GDL ++ + V G HLT E+ ++ L+ T L Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 T+E L ++D D + +D + LR+KL I TV G GY L Sbjct: 191 TREQLLEEVWDWVDASGTRTVDSHVKALRRKLGAD-----LIRTVHGVGYSLEPP 240 >gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] Length = 229 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L +E F V G++ + L + D I+LD + ++ G EV Sbjct: 8 VLVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R S P+ +LS S DKVRGL++GADDY+ KP++ EL+AR+R +RR R Sbjct: 68 CRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVR 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PATVGIRLEFDDIILDSETHKVSRDDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ GG++ + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGEDPVRTVRGAGYAL 228 >gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046] gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89] gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536] gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC O1] gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC 8739] gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli SMS-3-5] gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638] gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11] gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012] gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1] gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88] gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a] gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39] gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli UMN026] gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA] gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str. REL606] gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp. 4_1_40B] gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412] gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354] gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302] gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101] gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736] gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70] gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736] gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605] gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206] gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143] gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046] gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89] gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli 536] gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1] gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5] gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638] gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11] gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012] gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1] gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli S88] gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli IAI39] gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli ED1a] gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli UMN026] gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82] gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA] gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)] gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli B str. REL606] gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BL21(DE3)] gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042] gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412] gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354] gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034] gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302] gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101] gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146] gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70] gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1 str. NRG 857C] gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431] gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae CDC 74-1112] gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC 9905] gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli WV_060327] gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1] gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v] gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli AA86] gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736] gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605] gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206] gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143] gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88] Length = 219 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|227891159|ref|ZP_04008964.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|227867033|gb|EEJ74454.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300214820|gb|ADJ79236.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 239 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 16/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M++L+IED+K++ + + + E ++V G +E K E+D I LDL L + Sbjct: 1 MKLLMIEDNKSVCEMMSMFFEKEKWDVEYAYDGISAVEKFKEKSDEWDMITLDLNLPGMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117 G +V +R + P+ IL+ S D++ GL+ GAD+Y+SKPF+ L+ARI+A+ R Sbjct: 61 GMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKALHRR 120 Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 +++ + T +N + + +RI LT KE+ ++ +L+ + Sbjct: 121 AQISALGSNKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAKKPR 180 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++E L ++D + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 QVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDTEA 238 Query: 227 D 227 + Sbjct: 239 E 239 >gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 118/223 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD LA L+ + V V GE G E+ I+LD L + G Sbjct: 1 MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + P+ +++ + DKV GL +GADDY+ KP + EL+ARIRA++RR Sbjct: 61 GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL ++ V H + LT E+ ++EL L++++ ++HL+D Sbjct: 121 ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + I LR+KL+ A K +IET+ G GY ++ Sbjct: 181 LEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQP 223 >gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae Sd197] gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617] gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella dysenteriae Sd197] gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617] Length = 219 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1] gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2] gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa LESB58] gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa C3719] gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192] gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1] gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa C3719] gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192] gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa LESB58] Length = 230 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+D+ + + + L ++ + V GE+G+ D ++LDLGL D G ++ Sbjct: 8 ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 LR LR PV +LS +S +KV L GA+DY++KPF +E +AR+R ++R+ Sbjct: 68 LRDLR-EWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G L V+ + V ++G + LT KEY ++ L+ +T++ L ++ Sbjct: 127 ESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V + LR+KL + ++ T G GY LR++ Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230 >gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 232 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGRETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWILASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 ++ + ++V I LR++L+ I+TVWG GY + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKME 226 >gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae] Length = 229 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + D ++LD L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ ++ ++ + PV +L+ EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 LIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I LR L AG I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRPLRNALE-DAGHDKLIQTVRGAGYRF 225 >gi|295133222|ref|YP_003583898.1| two component transcriptional regulator winged helix family [Zunongwangia profunda SM-A87] gi|294981237|gb|ADF51702.1| two component transcriptional regulator, winged helix family [Zunongwangia profunda SM-A87] Length = 225 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + +++ L+S ++ V+ ++GI L Y D I+LD+GL D G + Sbjct: 5 KILIIDDEPQIRKLLQINLESNDYKVFEAGTAKEGILLAARYTPDLILLDIGLPDKNGHQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR + P+ ILS + D V L +GA DY++KPF EL+ARIR+ +R S+ Sbjct: 65 VLQELR-QWFNNPILILSVQDNEADIVSALDNGATDYLTKPFRTGELLARIRSAIRNSQN 123 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I TGD+S++ A+ ++V+ H I LT EY+++ LL+ + LT L ++ Sbjct: 124 TDNNAILTTGDISIDFVARIIKVREHIIKLTSTEYELLFLLARNEGKVLTHHYLLRKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + + VFI LRKK+ +I T G GY + Sbjct: 184 PSFQLETQYLRVFIGNLRKKIEANPNHPKHIITESGIGYRFQ 225 >gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] Length = 224 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 RIL+I+DD ++ + + +++V + G +GI+L + +D I+LD+ + ++ G+ Sbjct: 5 RILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIMMPNLDGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 + +R P+ +S +++ D+++G + G DDYI+KPF+ LV ++ A+ R S Sbjct: 65 TTCKMIR-NTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKRTS 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + IV + ++LD ++ + G+ + LT KE+ +++ L + +T+E L+ ++ Sbjct: 124 ETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+D I +RKKL YI TV G GY L + Sbjct: 184 GYDYYGDTRIVDAHIKNIRKKLKI-----PYIRTVKGIGYTLEK 222 >gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family protein) [Desulfobacterium autotrophicum HRM2] gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family protein) [Desulfobacterium autotrophicum HRM2] Length = 228 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + L + F V G+DG+ + F E D I++D+ L + G Sbjct: 1 MRLLLVEDDVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR +TPV +LS ++D+VRGL++GADDY++KPF EL+ARI+A I R Sbjct: 61 SLIKTLRARGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+L ++L + V G + L E+ ++E L + ++K M + H++ Sbjct: 121 GVVDPTTLSYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +++ +C+LR K+ + I TV G GYVL Sbjct: 181 NYNFDPMTNVVEARVCRLRDKI-DKGFHPKLIHTVRGAGYVL 221 >gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] Length = 243 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224 + I++ +I LRKK + +A G + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAP 241 >gi|166032567|ref|ZP_02235396.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC 27755] gi|166026924|gb|EDR45681.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC 27755] Length = 231 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ ++ ++ + LK E+ V D G +++ K FD I+LD+ + D GF + Sbjct: 6 VLIIDDEPSILKAVSMTLKQEHIAVTCADNGALALDILKANTFDLILLDIIMPDQDGFSI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R ++ TPV +LSG +V+GL+ GADDYI+KPF+K LV++IRA+VRR+ + Sbjct: 66 LKVIRSSQNYTPVILLSGRGEDSAQVKGLELGADDYITKPFSKTVLVSKIRAMVRRTNQY 125 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G ++ ++++TV G I LT KE+ ++ L +K+ + Sbjct: 126 VLSSDEAITEVKKGSFTLRMESQTVLKNGKEISLTSKEFSLLYLFIENPEYIFSKQELFS 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ D + I V+I KLR KL + +I TVWG+GY Sbjct: 186 KVW-RSDNCDDSTILVYIKKLRDKLEDDPSHPTHICTVWGKGYKF 229 >gi|157693741|ref|YP_001488203.1| response regulator [Bacillus pumilus SAFR-032] gi|157682499|gb|ABV63643.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+ +D++A+ +E +LK E F ++Y ++ +++ K + ++LD+ + GF Sbjct: 5 KILIADDEEAIVKMVERVLKKEGFKHIYKAYHADEALDVVKNEDIHLLLLDVMMPGKSGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---- 116 +VL +R P+ L+ +S DK+ G GADDYI+KPFN ELVARI+A + Sbjct: 65 DVLPEMR-KFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTY 123 Query: 117 ---RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + AQS S + + ++V+G + + +++ N L+K+ Sbjct: 124 ISLKEDQDEAQSPYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + V I KLR+K+ YI T+ G GY + Sbjct: 184 IYEKVWGVPSYGDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKFIPH 234 >gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] Length = 229 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + +D +E + I++D L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGGHDKMVQTVRGAGYRF 225 >gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp. subtilis str. 168] gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp. subtilis str. 168] gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp. subtilis str. SMY] gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yrkP gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis] gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp. subtilis str. 168] Length = 231 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + +E L + V G+ ++L D +ILD+ + I G E Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ L+ SS DK GL +G DDY++KPF++EEL AR+ A +RR Sbjct: 63 TCQHIR-KSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G L V+ + V + +I L+ EY++++LL ++N + + Sbjct: 122 YQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181 Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I KLR K+ + YI+T WGRGY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228 >gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Yersinia enterocolitica subsp. palearctica Y11] Length = 279 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 54 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 113 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 114 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 173 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 174 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 233 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 234 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 275 >gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 254 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +A + + + V V G +EL D ILD+ L D+ G + Sbjct: 32 RVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAAGRPDLAILDVMLPDMDGLD 91 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE--LVARIRAIVRRS 119 VL LR P L+ + ED+V GL +G DDY++KPF+ EE + A Sbjct: 92 VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++V GDL +N V G I LT +Y +++ L T L+KE L ++ Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 I++++I LRKK+ A I TV G GYV+R Sbjct: 212 GYDFGGRANIVELYISYLRKKI--DADRDPMIHTVRGAGYVIRP 253 >gi|169343028|ref|ZP_02864056.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298937|gb|EDS81011.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 234 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ESYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + V G L VN D K V + G + +T E+++++LL + E Sbjct: 125 LSMVKKDEKKTNSYVIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 229 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 225 >gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 229 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G E+ Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITG-EI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 66 FIEEIRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S V N ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + I+V I LR K++ +YI+T+WG G+ + Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228 >gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 236 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED+K ++ ++ L+ E++++ G++G+E E D I+LD+ L + GFE Sbjct: 6 HILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIMLPSMDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R +TP+ +L+ DKV GL+ GADDYI+KPF+ E+VAR++A VRR Sbjct: 66 ICKQIR-KTKNTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKANVRRVEM 124 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L+ D+ +++ V V+G I +T +E+++++ L+ ++ ++E L Sbjct: 125 IENSAVASQLLKFKDIEIDVSKYIVRVRGEEIKITFREFELLKFLAQHRDQVYSREQLLT 184 Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +DV + +LR+K+ ++ T G GY Sbjct: 185 IVWEYEYIGVDSERTVDVTVRRLREKIEIDPSNPEFVITKRGVGYYF 231 >gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] Length = 228 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ + ++L L S N+ + + G+D + + + D ILDL L + G++ Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ +R PV ILS DK+ GL GADDY++KPF+ EL ARIR+++RRS Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + + G +LD + V ++ + LT KE+++++ L+ + +++E +N ++ Sbjct: 123 KKDERLIQIHGLCI-DLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +DV I LRKKL N +I++V GY L D Sbjct: 182 GYDFIGESRTLDVHINSLRKKLGNEYAH--WIQSVRQVGYRLVSGDND 227 >gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 258 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DDK L H ++ L EN + G++GI K E+ +ILD+ + + GF+ Sbjct: 31 KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R PV +L+ S KV GL+SGADDY++KPF+ +E +AR+ +++RR Sbjct: 91 VLEKIR-ETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 149 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L+++L++++V + + L KE+ ++ + + LTK+ Sbjct: 150 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 209 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I KLRKK+ + YI+TV G GY ++ Sbjct: 210 KVWQEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRFSKDV 258 >gi|256060055|ref|ZP_05450237.1| Transcriptional regulatory protein chvI [Brucella neotomae 5K33] gi|261324031|ref|ZP_05963228.1| regulatory protein BvrR [Brucella neotomae 5K33] gi|261300011|gb|EEY03508.1| regulatory protein BvrR [Brucella neotomae 5K33] Length = 239 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G ++ + I D+ + + G E+ Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++A++RR Sbjct: 70 LRRLR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G + G L ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 129 DGTAKLAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238 >gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] Length = 260 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F D + I D ++LD + G + Sbjct: 35 RILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 94 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V++ ++ PV +L+ ED+V+GL+ GADDY+ KPF+ +ELVAR++AI R Sbjct: 95 VIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILRRI 154 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I L+++ + V I + EY+++ ++E LN++ Sbjct: 155 SPMATEDIIEMNGLTLDPTSHRVSSNDTPIDMGPTEYKLLHFFMTHPERVYSREQLLNYV 214 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A G ++TV G GY Sbjct: 215 WGANVYVEDRTVDVHIRRLRKALE-AEGHDKMVQTVRGTGYRF 256 >gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218] Length = 219 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV L+ ++ ++V GL+ GADDY+ KPF E+ A++ A++RR+ Sbjct: 61 DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] Length = 229 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD AL+ I L+ + + V V GE +E + D ++LD L I G EV Sbjct: 6 LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLPGISGLEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +LS D +RGL +GADDY+ KPF+ E L AR++A++RR Sbjct: 66 CRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRRLP 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++L L ++ + VE G + L EY+++E L ++E L H ++ Sbjct: 126 PADKTLRF-DTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAWE 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E++ +DV I +LR+ L+ ++ I TV RGY L Sbjct: 185 RSSFVELRTVDVHIRRLRQTLNE-GDEQDIIRTVRARGYAL 224 >gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 6/226 (2%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+++D+ + + L E++ G + + + D +ILDL L D+ G Sbjct: 1 MKTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLMLPDMEG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R S P+ +L+ + ++ G +GADDYI KPF+ E++ARI+A++RR Sbjct: 61 ERVCQEIRT-FSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLRRG 119 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L +N V G I+LT EY+++ LL+ ++E + Sbjct: 120 DDSKLLADVIVYHQGRLVINSLKHEVTCDGQVINLTPSEYKLLLLLAKYPQRNFSREELV 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++IID I LR+K+ + YI TV+G GY Sbjct: 180 DRVLGCDFIGDIRIIDQHIKNLRQKIEPDSRQPQYIITVYGFGYRF 225 >gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 230 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L +++ L N+ V V GE G+ Y +DA I+D+GL + G Sbjct: 1 MRILLVEDDIELQTNLKQHLLDANYTVDVASDGEIGLFQGCEYRYDAGIIDVGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR +I P+ IL+ S +DKV GL +GADDY++KPF EELVAR++A++RRS Sbjct: 61 ALITTLREKEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A LI G S+N + V+ I L+G EY++ E L +K + H+YD Sbjct: 121 GKASPLIHNGPFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYGLIETLRGQGYRL 220 >gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] Length = 227 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRVREKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+VFI +LRKKL N IET+ G+GY LR + DE Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLRVISPDE 227 >gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] Length = 239 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 14 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 74 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDRMVQTVRGTGYRF 235 >gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR [Pseudoalteromonas haloplanktis ANT/505] gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR [Pseudoalteromonas haloplanktis ANT/505] Length = 229 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I+DD L + L ++ F + GE G++L + ++ I+LD+ L + GF Sbjct: 1 MKLLMIDDDTGLCELLSEYLTAQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR TPV +L+ D++ GL+ GADDYI KPFN EL+AR++AI RR Sbjct: 61 EVLKQLR-QTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + T ++VNL A+ + G + LTG EY+++ LL ++KE Sbjct: 120 HINSLNVATTSKLLVNGITVNLAAREASIDGSTLTLTGTEYEILTLLCKNAGEVVSKEQI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + ID+ + +RKK++ G+ I+T+ G GYV Sbjct: 180 SEEVLGRRLASFDRSIDMHVSNIRKKIAEHIPGER-IKTMRGTGYVF 225 >gi|298294321|ref|YP_003696260.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930832|gb|ADH91641.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 232 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + + G ++ K D I D+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALESEGYRIQTYTDGATALDGFKTNPPDLAIFDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++A++RR Sbjct: 64 LRRLR-QKSDMPVIFLTSKDDEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVAPK 122 Query: 123 AQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +L G L ++ + T +G + LT E+ +++ L+ R ++ Sbjct: 123 DGTLPRETDSAKVLERGQLRMDPERHTCTWKGENVTLTVTEFLILQALATRPGVVKSRNA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY +E Sbjct: 183 LMDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDNFEMIETLYGVGYRFKE 232 >gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] Length = 225 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD A+A + L E + V G ++ D +ILDLGL D+ G + Sbjct: 3 KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R I+ P+ IL+ + D V GL SGADDY++KPF EL+AR+RA++RR+ Sbjct: 61 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I D+ V + A + LT KE+ ++ +L + +++E + ++ Sbjct: 121 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 K +D+ + LR+KL + A YI TV G G+ Sbjct: 181 GSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 223 >gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 229 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225 >gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DD A +L+ + V + + D ++LD+G+ + GF Sbjct: 1 MEILVADDDLASVKLTSFLLEDAGYRVIKAYDAAGVLHAIEQRTPDLVLLDVGMPKVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R P+ ++G ++D+V GLQ G DDY+ KPF EL+AR+ A++RR Sbjct: 61 DICRQIR-RMSDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRN 119 Query: 121 GHAQSL---IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I G L+++ TV G + LT E++++ L L+ + LN Sbjct: 120 SDMVNPVTRISQGPLTLDPIEHTVLFEDGRHVVLTPIEFRLLYYLMQNSGRVLSPDQILN 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++ V++ +LR K+ + +I TV GY Sbjct: 180 KVWGYDYEGESNLVAVYVRRLRAKIESDGESPRHIITVRNLGYKFV 225 >gi|284029587|ref|YP_003379518.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808880|gb|ADB30719.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 70/219 (31%), Positives = 124/219 (56%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD AL+ + ++L++E ++ Y+ G+ + + ++ D ++LDL L + G + Sbjct: 4 RILIVDDDTALSEMLSIVLRNEGYDTYLCATGDKAVPAFREFKPDLLLLDLMLPGMDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA +RR Sbjct: 64 VCRAIRAESGV-PIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARLRRMDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PGPESLTIGDLTIDVAGHSVKRSGETIQLTPLEFDLLVCLASKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEIVVTVRGVGYK 221 >gi|229173900|ref|ZP_04301438.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228609538|gb|EEK66822.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 225 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016] gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 243 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + I+ L++ + VYV G D + L D IILDL L DI G + Sbjct: 17 KIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGED 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+G + ED + GL GADDY++KPF+ +LVAR++A++RR+ Sbjct: 77 ICEMLRKRSKV-PIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 135 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 DL +N V+ G+ ++LT EY ++ + T+E + Sbjct: 136 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID I LR K+ + YI T+ G GY Sbjct: 196 VTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 240 >gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 250 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R ++++D+ +L + + L+ E ++V + G + + + D ++LD+ + + G Sbjct: 24 IRAVVVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIMMPGLDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR I TP+ L+ S++D++ GL G DDY++KPF+ EELVAR+RA++RRS Sbjct: 84 AVLTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSS 143 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL+++ V G R+ LT E++++ L L++ L+ Sbjct: 144 ITIAGDSNPVIEVGDLTLDESTYEVARGGTRVELTATEFELLRYLMRNPRRVLSRAQILD 203 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++++I LRKK+ G I TV G GY+L+ Sbjct: 204 RVWSYDFGGRASVVEIYISYLRKKI--DVLGPPMIHTVRGVGYMLK 247 >gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] Length = 223 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ L SI L+ + V GE EL +D I+LD+ L I GF Sbjct: 1 MKLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSYDLIVLDINLPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R V +L+ + I+D+V+GL GA+DY+ KPF+ EEL ARIR+++RR + Sbjct: 61 TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ +S ++ +KTV +G I LT KE ++E L L + +++E L H++D Sbjct: 121 LQEDTVLSAQGISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G + V + LR+KL + G KN I G+GY++ E Sbjct: 181 GDMNEFSNTVRVHVSALRRKLKESLG-KNIIRNEIGKGYIIDE 222 >gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] Length = 239 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 14 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 74 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDRMVQTVRGTGYRF 235 >gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 222 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A ++ L+ F + + G + + + +++ +ILDLGL I G E Sbjct: 3 RILIAEDEPHIAAFLDKKLRDNGFITTIAEDGYEALNQVRHEQYNLLILDLGLPGIEGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR P+ IL+ + DKV GL+ GA+DY++KPF+ EEL+ARIR +R+ Sbjct: 63 VLEELRGQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQPST 122 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G++++++ ++TV V R+ L+ E+ +++ L + L+++ LN++ Sbjct: 123 PEPKAERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQILNYV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+DV+I LRKKL +N IETV GY LR+ Sbjct: 183 WGYDYDSSSNIVDVYIGYLRKKL-----NRNLIETVRSVGYRLRK 222 >gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes] Length = 228 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ + + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|531494|emb|CAA56927.1| phoB [Shigella flexneri] Length = 229 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|325979111|ref|YP_004288827.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179039|emb|CBZ49083.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 225 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + + LK+ F E + + + D I+LD+ L G + Sbjct: 2 IYCVEDDDDIRELMLYTLKTTGFVAQGFSNAELFWQAIESQKPDLILLDIMLPGSDGLSI 61 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L +++ PV + + + DKV+GL G+DDY+ KPF E+++RI+A+ R Sbjct: 62 LEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRSQ 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++ G+LS+++ TV+ G I LT KE++++ LL N T++ LN ++ Sbjct: 122 KSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I LR KL +A+ + I+T+ G GY L E Sbjct: 182 GEYFVGETRTVDVHIGTLRTKLGDAS---HLIKTIRGVGYRLEEE 223 >gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum ATCC 33693] gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum ATCC 33693] Length = 233 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDDK + + L LK + + V GE+G+EL +D ++LDL L G E Sbjct: 12 KILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ I + ++ DKV L GA+DYI KPF EEL+ARIR + R Sbjct: 72 LCQEFR-KLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRET 130 Query: 122 HAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I + +L K V + I LT E+ ++E + + ++E L ++ Sbjct: 131 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E KI+DV+I LRKK+ YI T+ G GY+ + Sbjct: 191 YDFDGEEKIVDVYINSLRKKMDT---ESKYIHTIRGFGYIFQ 229 >gi|229012458|ref|ZP_04169633.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229167897|ref|ZP_04295628.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615537|gb|EEK72631.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228748817|gb|EEL98667.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G SG DDYI KPF E++ R++A++RR + Sbjct: 64 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I ++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 123 MLSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223 >gi|254449738|ref|ZP_05063175.1| two component transcriptional regulator, winged helix family [Octadecabacter antarcticus 238] gi|198264144|gb|EDY88414.1| two component transcriptional regulator, winged helix family [Octadecabacter antarcticus 238] Length = 247 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ E +L +E+F+V+ G + + K +D +ILD+GL D G Sbjct: 25 KILLVDDDEDLREALGEQLLMTEDFDVFEAGNGAEAMTKAKEGLYDLVILDVGLPDTDGR 84 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +L+G D + GL +GA+DY++KPF L+ARIRA +R Sbjct: 85 ELCRLMRKQGVKCPIVMLTGHDGDSDTILGLDAGANDYVTKPFKFPVLLARIRAQLRTHE 144 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 145 QSEDAVFTLGPYTFQPAQKMLLTEDNKKIRLTEKETNILKFLYRSTDGVVARDVLLHEVW 204 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 205 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 246 >gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] Length = 232 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 136/233 (58%), Gaps = 7/233 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ ILL+ED+ +A ++L L E +N+ V G DG+ ++D IILDL L ++ G Sbjct: 1 MKEILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R LR KI+TP+ +L+ S + DKV GL GADDY++KPF EEL+ARIR I+ R Sbjct: 61 IEICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQ 120 Query: 120 RGHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G ++++ + T + I LT KE++++E L + KN LT+E Sbjct: 121 VVISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++++ E E + DV+I LR K+ +YI TV G GY +++ ++ Sbjct: 181 VSNVWGYDYESETNVTDVYIRYLRSKIDQKYDT-HYIRTVRGIGYQFKDDEEE 232 >gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli CFT073] gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972] gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073] gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972] gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU 83972] gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 219 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|322805284|emb|CBZ02848.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 240 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG + E D +ILD+ L D G+ Sbjct: 10 KILVIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRAKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N+ + G I L KE +I + N ++KE Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKKDGELIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235 >gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + V G +G+ L + + IILD+ + D+ GF Sbjct: 4 VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R PV +L+ S EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 64 QVLQEIRKKNNV-PVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ D+ ++ +TV +Q + LTGKE+ ++ L+ K TK+ Sbjct: 123 TLNPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I FI KLRKK+ YI+TV G GY + Sbjct: 183 YTQVWAEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEV 233 >gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 280 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + I L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V++ +LRKK+ + I TV G GY L + Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220 >gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074] Length = 221 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 114/221 (51%), Gaps = 1/221 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +LIEDD A+ ++EL L + V GE+G+ L + D I+LD+ L I GFEV Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR + Sbjct: 61 RRIR-RTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERES 119 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 V G L ++ A TV G + LT E +++ LS R L+++ L +++ Sbjct: 120 NDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHDY 179 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++D + +LR K+ + I TV G GY L Sbjct: 180 LGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAP 220 >gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 240 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 117/238 (49%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +++DD+A+ + L+L++E F G +E+ + D I+LD+ L + G V Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + P+ +L+ S D V GL++GADDY+ KPF EL+ARI A R ++ Sbjct: 64 ARRIR-ATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKPA 122 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + + G + ++ T G ++LT E++++ +L+ Sbjct: 123 AEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ L +++ + + ++++V + +LR K+ + ++TV G GY + Sbjct: 183 ISRPSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240 >gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226] gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226] Length = 224 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ +LRKK+ + + I+T G GY L + Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYLGD 223 >gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 231 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A +E+ LK+EN+ V V G ++ + +D ILD+ L D+ GF Sbjct: 3 MNILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVMLPDMDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ DK+ GL GADDY++KPF EL+AR++A +RR + Sbjct: 63 SICRTIR-QNYTWPIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRRYK 121 Query: 121 GHAQSLIVTGDL----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +N + + ++LT E++++ L R+ ++ Sbjct: 122 RYNVQQKAKELSYLGLVMNQEQHICRLNEKDLNLTPIEFRLLWYLCERQGKVVSARELYT 181 Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + V I +R+K+ + YI+ VWG GY L E Sbjct: 182 AIWQEEYLSSSNNTLMVHIRHIREKMKDRGEHPRYIQNVWGVGYKLGE 229 >gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 113/220 (51%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +L + LK + + G + +++ + D II D+ + ++ G+E+ Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTNIDLIISDIMMPNMDGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A P+ +++ S EDK G +G DDY+ KP + E++ R+ A+++RS+ Sbjct: 64 TRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKRSKLA 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + G+ ++ DA+TV G + + E++++ L N T+ L+ L+ Sbjct: 124 SEHTMTVGNCVLDYDAQTVAFDGQQGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELWGM 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYV 220 + + + +DV I +LR + + I TV G GY Sbjct: 184 DKDVDERTVDVHIKRLR---ERYGSAEAFSIVTVRGLGYK 220 >gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD + S++ L+ + + + + D G+ + L +D +ILD+ L D+ GF Sbjct: 1 MRILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR + P+ L+ + ++ +V GL G DDY++KPF EL AR+RA++RR Sbjct: 61 DICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRREG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + D++++ V +I+LT KEY ++E L +++ M H+++ Sbjct: 121 PSKTSQLKFLDITLDTINHQVWRGERKINLTRKEYLLLEFLMHNPRQVISRTMIAEHIWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IDV++ +R+KL G + I T+ G GY L+E Sbjct: 181 SDAENLSNVIDVYVRYVRRKLCE-QGESDVIHTIRGFGYQLKEP 223 >gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 235 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L+ + F V G G+++ + + DAI+LD+ + + GF Sbjct: 9 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF----NKEELVARIRAIVR 117 +LR LR + PV L+ S++DK+ GL GADDY++KPF L +R R Sbjct: 69 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 128 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + D+ ++ D + V +G + L+ E+ ++ + T L+K L+H Sbjct: 129 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREP 233 >gi|254518844|ref|ZP_05130900.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226912593|gb|EEH97794.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 234 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +I+L++D++ L ++ + E F +Y D G D I K D IILD+ L DI G+ Sbjct: 10 KIMLVDDERELLSLLKEVFIKEGFKEIYAVDNGIDAILQVKEKNPDMIILDVNLPDIDGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V +R + P+ L+ M E+K++GL++G DDY++KPFN +E+V R+++ +RR Sbjct: 70 KVCDRIR-KFSTCPIIFLTAMGEDEEKIKGLEAGGDDYVTKPFNIKEVVLRVKSQLRRGS 128 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L G++S+N + V+ I LT KEY +I L N +K Sbjct: 129 IVSEVKTNLYTFGNISINEETGEVKKGKENILLTAKEYSLILFLVKNINKVFSKSSLCEA 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I V I LR+KL + +I+T+ G GY L Sbjct: 189 IWGYEYDGYDNTIMVHIRHLREKLEDNPSDPKHIKTLKGIGYKLV 233 >gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD L ++ + L + + V G + + D +ILDLGL D+ G + Sbjct: 19 RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGLPDMDGVD 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 VLR LR + PV +LS DKV L +GADDYI+KPF +EL+AR+RA R Sbjct: 79 VLRDLR-RWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRRVPA 137 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ + SV+L A+ V+ G + LT E++++E+L L N +T++ L ++ Sbjct: 138 PEAAPVVASAAFSVDLAARRVDRGGSAVRLTPTEWKILEILVLNPNRLITQQQLLARVWG 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + V++ +LR+KL AG ++ T G GY Sbjct: 198 PGYVKEANYLRVYMAQLRRKLEADAGKPRHLLTEPGIGYRFVP 240 >gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 239 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L I+LDL L G Sbjct: 6 KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESVSLIVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 66 VCQRLRNQSNPVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G S+NL + + I LT E+ ++++L L++ Sbjct: 126 KLLGLPAEDDAIINFGKFSLNLSTREMFQGDEHIQLTSGEFAVLKVLVSYPGVPLSRNKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ + YI+T+WG GYV + Sbjct: 186 MNLARGREYSTMKRSIDVLVSRLRRVIEEDPTHPRYIQTIWGLGYVFVPDG 236 >gi|331266799|ref|YP_004326429.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683471|emb|CBZ01089.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 218 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + I L + G++ +E YE ++LD+ + G Sbjct: 1 MKILIVEDEEMIREGISDYLTDCGYETIEAADGQEALEKFSSYEVALVLLDIQMPKFNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KSSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRVFSYKDTKV-DFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|308176281|ref|YP_003915687.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743744|emb|CBT74716.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 246 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ +LA + + + + + G + + + D ++LD L G Sbjct: 22 IKVLVVDDEPSLAELVAMGTRMLGWEATMAHDGPEAVATARSLAPDVLVLDWMLPGFDGP 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF--NKEELVARIRAIVRR 118 EVLR +R PV L+ ++ED++ GL +GADDY++KPF + + Sbjct: 82 EVLRKVRTHFPEIPVLFLTAKDAVEDRIEGLGAGADDYVAKPFSLEEVLIRLHRLVERSG 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +V GDL +N D+ V G I LT E+ ++ L ++K L+++ Sbjct: 142 AATADSAELVVGDLVLNTDSHDVSRAGREISLTATEFDLLSYLMNNARRVVSKSQILDNV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + I++++I LRKK+ A + I TV G GYVL+ A Sbjct: 202 WHYDFDGQANIVELYISYLRKKIDVDA--EPMIHTVRGVGYVLKPAA 246 >gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 258 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 6/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + S+ L+ E + V G + ++D ++LDLGL + G Sbjct: 1 MRLLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR + +TPV I + ++ ++ GL +GADDY+ KP++ +EL ARIRA++RR+ Sbjct: 61 AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ + G +S+N + G + L+ +E+ ++E L R L++ LY Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDETCE 231 +DE ++V++ LRKKL + I + G GY++ +E A Sbjct: 181 WKDEISSNAVEVYVHSLRKKLG-----PDLIRNIRGMGYMIAKEPAPASPSR 227 >gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 232 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 R+L+I+DD L ++ +K E +T G DG+ + +ILD+ L I G Sbjct: 4 RVLIIDDDAELCALMKKCIKQEGLEADITYTGRDGLTKIAEQNGAYCLVILDVMLPGING 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F+VL +R P+ +L+ DKV GL+ GADDY++KPF+ EL+ARI +++RR Sbjct: 64 FQVLSEIR-KGSMVPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIRRY 122 Query: 120 RGHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 QS ++ ++ + +TV V G ++LTGKE+ ++ L+ K TK+ Sbjct: 123 TTFNQSTQLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++G + I FI KLRKK+ YI TV G GY + Sbjct: 183 TQVWEGEYAFDDNNIMSFISKLRKKIEPDVEHPFYILTVHGVGYRFNKEV 232 >gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+ + IE+ LK+E + V G + IEL + E +ILD+ + + G Sbjct: 6 VLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEVHCMILDIMMPKMDGITA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS + DK+ GL GADDYI+KPF+ EL+AR+++ +RR Sbjct: 66 TFKIRAERNI-PIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRRYVNF 124 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L ++ A+ + V G + LT EY++ ELL + ++ Sbjct: 125 GTAGEAAPLVEGLELDAAAREIRVDGEPVKLTPTEYKITELLLKNAGRVYSISDIYELVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I+ V I K+R+K+ Y++ VWG GY + + Sbjct: 185 NEPAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGLGYKIEK 228 >gi|311744153|ref|ZP_07717958.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312508|gb|EFQ82420.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 219 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A + L++ F V G GI+ EFD ++LD+GL GFE Sbjct: 3 RILIVEDEERIASFVAKGLRAHGFTPTVVADGITGIDYAVSGEFDLVVLDIGLPGADGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV +L+ S+ D V L+ GA DY+SKPF +EL+AR+R +R + Sbjct: 63 VLERLRRERPGLPVIVLTARDSVTDTVAALEGGAADYMSKPFRFDELLARVRLRLRVASE 122 Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + GD+ ++L + V G + L+ +E+ + E+L + L++E L+ ++ Sbjct: 123 PAADDAVEVGDVRLDLRTRRTTVAGREVDLSAREFTLAEVLMRHRGQVLSREQLLSQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +P ++DV++ LRKKL + TV G GY Sbjct: 183 YDFDPGSNVVDVYVGYLRKKLGAD-----LVSTVRGVGYR 217 >gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 225 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD+ + + L S+ F G + + + D ++LD+ L G ++ Sbjct: 4 IYCVEDDENIRELVRYALCSQKFQAEAFPDGPSFWKALEAKQPDLVLLDIMLPGESGLDI 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR ++ ++ PV +L+ +S D V GL +GADDYISKPF EL++R++A++RR Sbjct: 64 LKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAGADDYISKPFGIMELLSRVKAVLRRGG 123 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GD++++L V QG LT KE+ ++ L L+++ + Sbjct: 124 RQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELTVKEFDLLHYLMANAGIVLSRDQIMEA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + ID+ I LR+KL A I+TV G GY ++ Sbjct: 184 VWSFSYAGESRTIDMHIRSLRQKLGEAG---RIIQTVRGVGYRIQ 225 >gi|255523653|ref|ZP_05390620.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512708|gb|EET88981.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 225 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + ++ +L+ + V G + + L + FD I+LDL L + G E Sbjct: 3 KILVVEDDPKINKMVQTLLRKNEYEVVAAFSGTEALLLLEKESFDLILLDLMLPGLSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L A + P+ +S + K+ ++ GADDYI+KPFN EEL+ RI A++RR Sbjct: 63 IL-AKINEEFQIPIICVSAKDDLGTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121 Query: 122 HAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L V + I LT KEY ++ELL TK+ Sbjct: 122 GRTIDKSNIFGFKDLILDSENHIVTINDEPIELTVKEYSILELLISSPRKVFTKQNIFES 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++ V + LR KL + G+ YI+TVWG GY +++N Sbjct: 182 VWSEEYIMDERVVTVHVSNLRNKLKH---GEEYIKTVWGIGYKMQDN 225 >gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 255 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D++AL + +++ L+ E + + V + ++ + D ++LD+ L D+ G Sbjct: 30 IRVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPDMDGL 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + TP L+ S+ D+V GL +G DDY++KPF+ EELVAR+R ++RRS Sbjct: 90 GVLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRRSA 149 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + GDL+++ ++ V G + LT E++++ LL + L++ L Sbjct: 150 YLAPADDESLSVGDLTLDAASREVTRAGEPVSLTSTEFELLRLLMRNQRKALSRTDILRK 209 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D I+D+++ LRKK+ AG I TV G GY+LR Sbjct: 210 VWDYDFGGRTSIVDLYVSYLRKKI--DAGRDPMIHTVRGVGYMLRP 253 >gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. Sakai] gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4113] gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4401] gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4501] gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4486] gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4196] gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4076] gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC869] gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC508] gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A] gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22] gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019] gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171] gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. EC4024] gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4206] gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4045] gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4042] gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4115] gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11] gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. TW14588] gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1] gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989] gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. TW14359] gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9] gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O103:H2 str. 12009] gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O26:H11 str. 11368] gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O111:H- str. 11128] gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O157:H7 str. FRIK2000] gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O157:H7 str. FRIK966] gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O55:H7 str. CB9615] gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718] gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271] gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591] gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9] gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4196] gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4113] gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4076] gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4401] gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4486] gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4501] gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC869] gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC508] gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A] gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22] gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019] gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171] gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4206] gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4045] gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4042] gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4115] gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11] gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. TW14588] gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli 55989] gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli IAI1] gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O157:H7 str. TW14359] gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O26:H11 str. 11368] gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O103:H2 str. 12009] gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O111:H- str. 11128] gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O55:H7 str. CB9615] gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli W] gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. EC1212] gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli EC4100B] gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. G5101] gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H- str. 493-89] gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H- str. H 2687] gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7 str. USDA 5905] gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. LSU-61] gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14] gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010] gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68] gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180] gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. 1125] gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. 1044] gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718] gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271] gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591] gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9] Length = 219 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia enterocolitica W22703] Length = 279 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 54 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 113 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 114 FIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 173 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 174 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 233 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 234 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 275 >gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 246 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G + +++ K + D ++LD+ + G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKMAKDFRPDVLVLDVMIPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL--VARIRAIVRR 118 EVL +R P L+ +++D++ GL +G DDY++KPF+ EE+ Sbjct: 82 EVLGRIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V GDL +NLD + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLRYLMENPKRVISKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WNYDFGGQANIVELYISYLRKKV--DAVHPPMIHTVRGAGYVIKP 244 >gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEVQGLSLDPTSHRVMANEAPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDKMVQTVRGTGYRF 225 >gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLR-ESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +S+I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 RIL+ +DD+ + ++ L+ E F G+ +E + D ILD+ + ++ G Sbjct: 26 RILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEMDGL 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E LR +R + PV ILS DKV GL+ GADDY+SKPF+ +EL+AR+ A +RR Sbjct: 86 ETLRHIR-ERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRREN 144 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H QS VTG ++ + TVEV G + L+GKE+Q++ L + T+++E + Sbjct: 145 KHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + V I LR KL I TVWG GY L + Sbjct: 205 WKDAFGGDLSTVTVHIKNLRDKLGAEG---RRIRTVWGIGYRLERD 247 >gi|271969946|ref|YP_003344142.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513121|gb|ACZ91399.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ EDD A + L+ E +V V G I+ + E D ++LD+ + G +V Sbjct: 5 VLVAEDDVKQAELVRRYLEREGHSVLVVHDGRSAIDEARRREPDLVVLDVMMPKADGLDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV +L+ ++ +D + GL GADDY++KP++ EL+AR+R ++RR R Sbjct: 65 CRVIRAESDV-PVLMLTARATEDDLLVGLDLGADDYVTKPYSPRELMARVRTLLRRVRRS 123 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GDL V+ V V G + T E++++E L+ + T++ L ++ Sbjct: 124 RDPEETLKVGDLLVDSARHRVSVAGSPVDCTPAEFRILETLAAQPERVFTRKQLLEEVHG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +DV + LRKK+ I TV+G GY L + Sbjct: 184 FDRFITRRTVDVHMLNLRKKIEPDPRRPTRILTVYGVGYKLTD 226 >gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L+ E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADPIRTVRGAGYSF 227 >gi|253999818|ref|YP_003051881.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|313201791|ref|YP_004040449.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|253986497|gb|ACT51354.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] gi|312441107|gb|ADQ85213.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 245 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ L + F+V + + D ++LDL L G Sbjct: 10 KILMVDDDLRMRELLQRYLSEQGFSVKTVSDSTEMNTVLSSEHIDLLVLDLMLPSEDGLA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR+ Sbjct: 70 ICRRLRAAGSTMPIIMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVMRRNER 129 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I G+ + +++ G +I +T EY ++++ L+++ Sbjct: 130 PVPGAPANSTETISFGEFVFDPSTRSLLKNGEQITITSGEYALLKVFVDHPRQPLSRDRL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + IDV + +LR+ + Y++T+WG GYV + + Sbjct: 190 MQLARGRELDVFDRSIDVQVSRLRRLIEADPTHPRYLQTMWGFGYVFIPDGE 241 >gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA] gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA] Length = 232 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +EL K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI G+L +N + V++ + LT K ++++ +L+ +K ++ Sbjct: 125 CETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWKE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224 + ++V I LR++L+ + + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228 >gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 14] Length = 239 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + + + L+ E++ V G + ++ + + D ++LD+ + ++ GF Sbjct: 11 MTILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGF 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+A+R + PV +L+ S +DK+RGL GADDYI+KPF+ EL++RIRA++RRS Sbjct: 71 ETLKAIR-EVSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRSL 129 Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL ++ + V V+G ++ L EY+++ L +T E L+ Sbjct: 130 MSPPARKTEIVVDEDLQIDFARREVMVRGKKVVLRPTEYRLLYHLVSNAGRLMTHETLLS 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + ++I LR+KL YI T G GY +E Sbjct: 190 KVWGREYRDEAHYLRLYITYLRQKLEEDPAHPKYILTERGIGYRFKE 236 >gi|240142372|ref|YP_002966882.1| two component transcriptional regulator, winged helix family [Methylobacterium extorquens AM1] gi|240012316|gb|ACS43541.1| two component transcriptional regulator, winged helix family [Methylobacterium extorquens AM1] Length = 231 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 160/225 (71%), Positives = 193/225 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR LLIEDD +A SIELML+SE Y TD GE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRALLIEDDSNVAQSIELMLRSETIVPYTTDTGEEGIDLAKIYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR+LRVAK+ TPV ILSGM IEDKV+GL +GADDY+ KPF+K+EL+ARI AIVRRS+ Sbjct: 61 DVLRSLRVAKVGTPVLILSGMGGIEDKVKGLGNGADDYVVKPFHKDELIARINAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS++ GDL+VNLDAKTVEV GH+++LTGKEYQM+ELL LR+ TTLTKEMFLNHLY Sbjct: 121 GHAQSVVTVGDLTVNLDAKTVEVSGHKVYLTGKEYQMLELLVLRQGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL+NA+GG+N+IETVWGRGYV+R A Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASGGQNWIETVWGRGYVVRNPA 225 >gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 217 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD A+A+ I+L L + N+ V GE+ + + + FD I+LD+ L + GF Sbjct: 2 IKILVVEDDIAVANLIKLNLNTANYESTVVFDGEEALNVIERDRFDLILLDVMLPKVDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ++ + PV L+ SS+ DKV GL++G DDY++KPF EL+ARI ++R Sbjct: 62 TL--FEKIKPLGIPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYN 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + L+ V+ G I LT KE++++ L KN LT+E + ++ Sbjct: 120 KKSNIINFKDTEVY-LEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I KLRKKL G K+ I+TV+ GY L E Sbjct: 179 YDYVGETRTIDNHIQKLRKKL----GWKDEIKTVFKLGYRLEE 217 >gi|194397670|ref|YP_002037262.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54] gi|194357337|gb|ACF55785.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54] Length = 218 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYKDTKV-DFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I KLRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIQKLRKKLDLD-----CILTVRNVGYKLE 216 >gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445] gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family [Brucella suis ATCC 23445] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 128/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIIEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV GRGY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGRGYRMRSGGEGEA 224 >gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR S PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL V+L + G RI LT KE+ ++ELL R+ L+K + + + Sbjct: 121 SNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +I+V I +LR K+ + + T G GY+L +A+DE Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDF-EAKLLHTCRGMGYML--DAQDE 227 >gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH] Length = 247 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + + +D +ILD+ L ++ G+ Sbjct: 1 MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + + + + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 TVLQRLRAESATRIMML-TAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFDTKLIHTLRGVGYVLE 221 >gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ LA ++ L N+ V V G G+ L + ++D I+LD+ L + GF Sbjct: 1 MKILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR PV +L+ +ED+VRGLQ GADDY+ KPF EL+AR+ A+ RR Sbjct: 61 DVLHELR-KSDRVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRRRG 119 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+++ GDL ++L + G R+ LT KE+ ++ LL ++ L++ Sbjct: 120 HIVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDLA 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +++V + +LR K+ + + TV G GYVL Sbjct: 180 EQVWDINFNSNTNVVEVAVRRLRGKV-DDPFETKVLHTVRGMGYVLE 225 >gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + + + L ENF+V + G+D I+L + D I+LDL L D+ GF Sbjct: 1 MKILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ ++ P+ +LS + I DK+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +I G + + L + V + ++ T E++++ L+ T+E Sbjct: 121 KVKLTTNNKETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + +D+ I ++RKKL + I+T++G GY Sbjct: 181 ELLDKIWGYDFSGNTRAVDIHIKRIRKKL---LNHEEAIKTIYGVGYRFE 227 >gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7] gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++EDD+ + I L L S + V D D + I DL L + G + Sbjct: 6 RIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMSGID 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ILS DKV GL SG+DDY++KPF EL AR+R+++RR Sbjct: 66 AIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHVT 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+V+ + V++ ++ LT KEYQ++ L K+ + +E LN ++ Sbjct: 126 SDIIRTKH--LTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I LR KL++ G YI+T+ GY E Sbjct: 184 DFIGESRALDVHIRALRSKLNDD--GHKYIKTIRSVGYRFYEEG 225 >gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] Length = 243 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L+ + F V G G+++ + + DAI+LD+ + + GF Sbjct: 17 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF----NKEELVARIRAIVR 117 +LR LR + PV L+ S++DK+ GL GADDY++KPF L +R R Sbjct: 77 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 136 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + D+ ++ D + V +G + L+ E+ ++ + T L+K L+H Sbjct: 137 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE Sbjct: 197 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREP 241 >gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] Length = 226 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K + + L + V GE+ +E ++D I+LDL L + G Sbjct: 1 MRLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 61 EILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +G +S + + +G ++ LT KE ++E L L +++E + H++D Sbjct: 121 VQKDVCLESGGISFDTIKREAYAKGKKVSLTRKENGILEYLLLNLGRPVSQEELMEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LR+KL G + I G GY +RE A Sbjct: 181 ASVDSFSGAIRVHMSSLRRKLKAVLGY-DPILNKVGEGYKIREEA 224 >gi|75812821|ref|YP_320438.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705577|gb|ABA25249.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 725 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 2/233 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++E+D+ A ++ L ++ F V +EL + E+D I+LD+ L D G Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +L+ + D++ G ++GADDYI+KP+ EL+ARIRA++RR Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V QG +HLT KEY+++EL + L+ + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231 + P + I I LR+KL A + IET++G GY L+ +++ E Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLKSVPEEREQGSE 233 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL +E L+ F V + + D ++LD+ + G E Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + ++ + PV +LS + + R L +GADDYI KP Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPI 710 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PGF 60 +LLI+DD L ++ + + ++ + ++ DAIILDL + G Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 +L L+ + PV +L+G+ + +V + GA+ ++ KP Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKP 584 >gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa UCBPP-PA14] gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1] gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa 39016] gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa UCBPP-PA14] gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa 39016] Length = 230 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+D+ + + + L ++ + V GE+G+ D ++LDLGL D G ++ Sbjct: 8 ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR PV +LS +S +KV L GA+DY++KPF +E +AR+R ++R++ Sbjct: 68 LRDLR-EWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L V+ + V ++G + LT KEY ++ L+ +T++ L ++ Sbjct: 127 ESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V + LR+KL + ++ T G GY LR++ Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230 >gi|256545102|ref|ZP_05472468.1| regulatory protein VanR [Anaerococcus vaginalis ATCC 51170] gi|256399143|gb|EEU12754.1| regulatory protein VanR [Anaerococcus vaginalis ATCC 51170] Length = 231 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + +++ L+ FN+ GE+ ++L E ILD+ L I G+E Sbjct: 4 KILICDDEEHIRQFMKINLEYAGFNIIEAGSGEEALKLADEEEPLVCILDIMLPGISGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++R + ++S S DK+ GL+ G DDYI KPFN +EL+ R+++++RR + Sbjct: 64 VCDSIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVKSLMRRVKF 123 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++++ G ++L ++ I +T E+ +++ L K +++ Sbjct: 124 IDVEKEEKNENVLEDGVFKLDLYSRNFYKNNIEIDVTPTEFTILKNFILNKGKAMSRMEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + KI+DV I ++R K+ YIETVWG GY R Sbjct: 184 MKDTWGDNYSTDTKIVDVNIRRIRAKIEENPARPEYIETVWGTGYRWR 231 >gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603] gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603] gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121] Length = 219 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K LA IEL L EN+ V + + G G++ +D IILDL L +I G E+ Sbjct: 4 ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRQIRQQQTT-PIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPKK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I + ++ +A V V G ++ LT EY + +L+ KN L +E LNH++ Sbjct: 123 DTINING--IIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL G IETV G GYV+R Sbjct: 181 TEVETNVVDVYIRYLRNKLKP-FGKDKVIETVRGVGYVIR 219 >gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM 1131] gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM 1131] Length = 249 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V E + I+LDL L G Sbjct: 16 KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLS 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R LR P+ +++ D++ GL+ GADDYI KPFN EL+ARIRA++RR Sbjct: 76 ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 135 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++I G +NL + + + LT E+ ++++L L+++ Sbjct: 136 ELPGAPSQDDAIITFGKFKLNLGTREMFQGDENMPLTSGEFAVLKVLVSYPREPLSRDKL 195 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + IDV I +LR+ + YI+TVWG GYV + Sbjct: 196 MSLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 246 >gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 237 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +++D+ + I+ L++ + VYV G D + L D IILDL L DI G + Sbjct: 11 KIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGED 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ +L+G + ED + GL GADDY++KPF+ +LVAR++A++RR+ Sbjct: 71 ICEMLRKRSKV-PIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 DL +N V+ G+ ++LT EY ++ + T+E + Sbjct: 130 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID I LR K+ + YI T+ G GY Sbjct: 190 VTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD A + L G G+++ ++D +I+D L + G Sbjct: 3 RILVIEDDPEAASYLVKGLSELGHTADQAADGPAGLDMALDRDYDILIVDRMLPKMDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ LR TPV ILS + ++D+V+GL++G DDY+ KP+ EL+ARI A+ RR + Sbjct: 63 VIQELRRQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPKS 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL+++ A + I L +E++++E L +T+ M L +++ Sbjct: 123 ASQIETTYTVGDLTLDRMAHSCRRGETEIPLQPREFRLLEYLMQNAGQVVTRTMLLENVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +P+ +IDV I +LR K+ + T+ G GY +R+ A Sbjct: 183 EYHFDPQTNVIDVHISRLRGKIDKGFDTP-LLHTIRGAGYTIRDAA 227 >gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A] gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A] gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 243 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224 + I++ +I LRKK + G IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241 >gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321] gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321] Length = 232 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +E+ K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +N + V+V + LT K ++++ LL+ +K ++ Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKIWQE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + ++V I LR++L+ A + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227 >gi|229162132|ref|ZP_04290103.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228621339|gb|EEK78194.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 223 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DDK + + L+ E F V+ + G+ + + I+D+ + + G+ Sbjct: 2 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIMMPFVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R PV +L+ + DK +G +G DDYI KPF E++ R++A++RR + Sbjct: 62 TLCEEIR-KYHDIPVILLTAKDQLVDKEKGFIAGTDDYIVKPFEPAEVIFRMKALLRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +++ V+ G I L KE++++ L+ T ++E + ++ Sbjct: 121 MLSADIITLHGTTIDRKGIEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + +DV + +LR + S I TV G GY L Sbjct: 181 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 221 >gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii ATCC BAA-894] gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + +G L + E+ IILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + ++TPV IL+ ++ED+V GL +GADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ D+++NL + V +QG + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D+P ++V I LR+KL K I T+ G GY L + Sbjct: 181 WQDDPSSNTLEVHIHNLRRKLG-----KTRIRTIRGVGYRLERPS 220 >gi|81428827|ref|YP_395827.1| two component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104608|gb|AAD10267.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610469|emb|CAI55519.1| Two component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 246 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 21/244 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M+IL++ED+K+++ + + + E ++ + G + +E +D I LDL L + Sbjct: 1 MKILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V + +R P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120 Query: 119 ----------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELL 161 ++ + T ++ + + I LT KE+ +++ L Sbjct: 121 AELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTL 180 Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++E L ++D + + + +D I KLR+K+ G I+TVWG GY Sbjct: 181 AKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEV--GPQVIQTVWGVGYKF 238 Query: 222 RENA 225 ++A Sbjct: 239 DDSA 242 >gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396] gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 232 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 4/228 (1%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL++D+ + L ++V V G++G+EL + D II D+ + ++ Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VR 117 G++ + ++ P + +S +DK+ GL GADD+I+KPF+ ELV R+ I R Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SRG I GDL +N V + + LT K ++++ +L+ +K Sbjct: 121 LSRGGETERIELGDLVINHVTHEVRIGDQPLELTVKSFELLWVLASNPERVFSKTELYEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224 ++ + ++V I LR++L+ I+TVWG GY + + Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNIPAIKTVWGLGYKMEKP 228 >gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224 + I++ +I LRKK + +A G + IET G GY++R Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAP 246 >gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] Length = 242 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 14/234 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA +I + +E ++ V G ++ D +I+D+ L + G E Sbjct: 15 VLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPVMDGLEA 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + VA PV IL+ DKV GL +GADDY++KPF+ EL+AR +A++RR Sbjct: 75 TK-RIVADRPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L ++ +TV + G +HLT E+ ++ L+ + + LT+E Sbjct: 134 KVIAKNAENEKVLDFGSLIIDPAQRTVSLNGKDVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++D D + +D + LR KL + I TV G GY + E Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKLG-----PDMIRTVHGVGYAFEPPSDGE 242 >gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 227 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L ++ G E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSGSE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +++ S DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLR-QRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRKSV 121 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + ++++ V V G + L KE++++ELL LT+ ++ Sbjct: 122 ETVESGAATLAAGPVRMDIERHVVTVDGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ +I TV G GY Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKVEPEPSTPRHIVTVRGLGYKFEP 227 >gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL ED+ L I L+ F V G + + L + IILDL + + GFE Sbjct: 7 RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ + + DKV GADDY+ KPF +EL+ARIRA++RRS+ Sbjct: 67 VCQRIR-EQSIVPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQW 125 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q G+L ++L+A +V G + LT E+ ++ L N LT M L H Sbjct: 126 SVQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQH 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E + + V+I +LR+KL ++ T G GY Sbjct: 186 VWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230 >gi|160879612|ref|YP_001558580.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428278|gb|ABX41841.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+A L ++F V + G G+E FD I+LDL L I GF Sbjct: 3 KILIIEDDAAIAAIERDYLAIDHFEVEIALDGRSGMEKALQGGFDLILLDLMLPGIDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI------RAI 115 V LR + P+ +++ DK+RGL GADDYI KPF+ LVAR+ A Sbjct: 63 VCCKLR-ETLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++++ A + G + +N D V V I L KEY+++ L+L + +E Sbjct: 122 LKKTDRTAPIQLNIGSIRINTDTHRVYVNDIEIDLKNKEYELLLFLALNADVVFNRETLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I +LR ++ G YI+TV G GY L+ Sbjct: 182 ERIWGMDAMGDNATVAVHINRLRDRIEEDPGNPRYIQTVRGAGYRLK 228 >gi|315022466|gb|EFT35493.1| Phosphate regulon transcriptional regulatory protein phoB [Riemerella anatipestifer RA-YM] gi|325335426|gb|ADZ11700.1| Signal transduction response regulator, receiver region [Riemerella anatipestifer RA-GD] Length = 225 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+D+ + I LK E + V+ + G +GIE K I+LD+ + D G E Sbjct: 5 RILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDKDGIE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +R + LS ++ G Q+GA+DYI K + L++++ A++ + Sbjct: 65 TCQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKVNALMNLT 124 Query: 120 RGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G L ++ D V L KE+ ++ LL+ +E L Sbjct: 125 QQVEEKNKILKIGHLIIDRDNFKVTKGDESFILPKKEFDLLNLLASNTEKVFKREEILEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + IDV I +LR+KL I+T+ G GY L Sbjct: 185 VWGNDVVVGERTIDVHIRRLREKLG-----FKSIQTLKGIGYKL 223 >gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 225 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L I L+ + V GE +E +D ++LDL L + G Sbjct: 1 MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALETLAAERYDLVLLDLNLPKVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR+LR + T V ILS S I DKV GL +GA+DY+SKPF+ EL AR+R++ RR Sbjct: 61 QVLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G LS N ++ V + LT KE ++E L L + +++E + H++D Sbjct: 121 IQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G + I V I LRKKL A G + I G GY Sbjct: 181 GSVDSFSNSIRVHISALRKKLRAALGY-DPIRNRIGEGY 218 >gi|218677215|ref|YP_002396034.1| putative DNA-binding response regulator [Vibrio splendidus LGP32] gi|218325483|emb|CAV27655.1| putative DNA-binding response regulator [Vibrio splendidus LGP32] Length = 224 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + L+ + V + G+ G+ + E+ +ILD L + G Sbjct: 1 MKILIIEDDTTTREFVAKGLEEHGYAVDQAEDGKKGLMMALSSEYQLVILDRMLPYLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A++ + + PV ILS M S+ED+V GLQ+G+DDY+ KPF ELVAR+ I+ R++ Sbjct: 61 KVLSAIKATEENLPVLILSAMDSVEDRVSGLQAGSDDYLIKPFALAELVARVDIIINRTK 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L ++L A V + + L KE+Q+I+ +++ + Sbjct: 121 RQPVTETNLIYDCLDIDLRAHRVVCKNQDLQLQPKEFQLIQYFVEHSEQVVSRMRLFEAI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV + LR+KL AG + + TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCPDLLHTVRGAGYVLR 223 >gi|152983691|ref|YP_001348856.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150958849|gb|ABR80874.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 235 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD+ LA I L F V G+ ++ + ++LDL L G + Sbjct: 8 KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFGAFLDFKPELVVLDLMLPGQNGLQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ IL+ D + GL+SGADDY+ KP L+AR+RA++RR Sbjct: 68 VCREIR-RVDNLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALIRRHAP 126 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S G L+V+ + E+ G I LT E++++ LL+ + L+++ LN + Sbjct: 127 LPASPETLAFGQLNVDRRRREAELDGRSIELTTMEFELLWLLASQAGEILSRDEILNQIR 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +DV I KLR KL + I+TVWG+GY+ + Sbjct: 187 GIGFDGLNRSVDVCISKLRSKLKDNPREPVRIKTVWGKGYLFNPLGWE 234 >gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS 85-1] Length = 219 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ D + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-TGHDKMVQTVRGTGYRF 225 >gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + +E L+ V G + + E++ ++LDLGL + G Sbjct: 1 MRVLLVEDDELIGSGVEEGLRDAGLTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TPV +++ ++ D+V GL +GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 61 ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I DL V TV G R LT +E ++ L + T L++ +LY Sbjct: 121 GRSTETIQYRDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLTHQGTPLSRARIEENLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E E ++V I LRKKL I+T+ G GYV+ + Sbjct: 181 WQEEVESNTVEVHISNLRKKLG-----PGIIKTIRGVGYVVEK 218 >gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 230 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLI+DD+ LA + L +E + V +G + + FDA+ILD+ L D GFE Sbjct: 4 RLLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVMLPDGDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR R Sbjct: 64 LCRQIRT-HSRVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + G L ++ ++ V + G LT ++ ++ + L++E ++ + Sbjct: 123 PQEARLDFGRLQIDPGSRVVRLDGVERRLTSHQFDLLLAFATHAGRVLSRERLMDLVKGE 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + IDV + +LR + + + T+ G GYV A+++ E Sbjct: 183 DLDAFDRSIDVHVSRLRALIEDDPRHPRRLLTIRGAGYVF---AREQDAE 229 >gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] Length = 239 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD L G + Sbjct: 14 RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 73 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 74 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LN++ Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 235 >gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 224 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR + + + + +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLRKTVSTRIMMV-TARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL ++ ++ ++ Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis z3032] gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis z3032] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 109/226 (48%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + + G+ + + D I+LDL L G Sbjct: 12 RILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KPF+ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L ++ + + LT E+++++ LS ++E LNHLY Sbjct: 131 QRDLQTLDAQSPLVIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDDDQPFIRAVYGVGYRWEADA 236 >gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 230 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 114/224 (50%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++D+ + + L L +N G++ I + F I+LD+ + ++ G+ Sbjct: 2 MNILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIMMPEMDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R +R + + P+ +++ D V+GL+ GADDYI+KPF+++EL+ARI A++RRS Sbjct: 62 ETCRKIR-SFSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + + V G + LT E+ ++ L N L+++ + ++ Sbjct: 121 QHELIQYK--GILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRE 223 E + +D I LR KL A +++TV+G GY + Sbjct: 179 LDATTEDRTVDSHIRNLRDKLRKAKFPIDEHLKTVYGVGYRWID 222 >gi|255532348|ref|YP_003092720.1| transcriptional regulator domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345332|gb|ACU04658.1| transcriptional regulator domain protein [Pedobacter heparinus DSM 2366] Length = 224 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K LA+ +E LK + + DG+E +D I+LDLGL D G Sbjct: 1 MKVLIVEDEKTLAYEMEDFLKKAFYICDLAHNISDGLEKISANSYDFILLDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L + IL+ ++ED++ GL GADDY+ KPF+ EL +R++AI RR Sbjct: 61 TLLPKAKKHNPDAAYIILTARGNLEDRIAGLDLGADDYLPKPFSLLELQSRMQAIARRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ GD ++L + + G +I L+ KE+ ++ L L N LT+ H++ Sbjct: 121 NLKEELLPLGDFKLDLQKRLIFFNGQQIELSRKEFDILSYLFLHSNRVLTRMQLSEHIWG 180 Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ + ID I +RKKL+ A N++ETV G GY +++ Sbjct: 181 TFADDDYDSNYIDAHIKNIRKKLNAWAAT-NFLETVRGVGYRIKK 224 >gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + N+ G G+ L ++D IILD L + G Sbjct: 1 MKILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L++ L + V + G I L KE+Q+++ L N +++ + ++ Sbjct: 121 SLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046] gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|89069932|ref|ZP_01157265.1| DNA-binding response regulator PetR [Oceanicola granulosus HTCC2516] gi|89044486|gb|EAR50614.1| DNA-binding response regulator PetR [Oceanicola granulosus HTCC2516] Length = 231 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD+ + ++ L F V V G L EFD I+LD+ + G Sbjct: 5 HILIVDDDERIRGLLQKFLLRNGFLVSVARDGAHARRLLDGLEFDLIVLDVMMPGEDGVS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL++GADDY++KPF +EL+ RI AI+RR Sbjct: 65 LCRDLRGRLKT-PILLLTAKGETTDRIAGLEAGADDYLAKPFEPKELLLRINAILRRVPA 123 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G +++ + + LT E ++ + S R L++ M + Sbjct: 124 AEPAPVTPKVLLLGPCRYDIERGEMWCGEELVRLTATENHLMRIFSARPGEALSRNMLVE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L + + + +DV I +LR+KL Y++TV G GY+L + Sbjct: 184 ELGRAGGQAQERAVDVQITRLRRKLEADPKQPRYLQTVRGAGYMLAPD 231 >gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae Rd KW20] gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 86-028NP] gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.1-21] gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 3655] gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittAA] gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittII] gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittGG] gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 6P18H1] gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 7P49H1] gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Haemophilus influenzae F3031] gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB) [Haemophilus influenzae Rd KW20] gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 86-028NP] gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 22.1-21] gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 3655] gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittAA] gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittII] gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittGG] gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 7P49H1] gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae 6P18H1] gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus influenzae R2866] gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3031] Length = 231 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ I L L + ++V + I K I+LD L G + Sbjct: 4 KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + P+ +L+ S+ ED + L +GADDYI+KPF+ + L+ARI A+ RR Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I +LS++ +A+ V Q I+L+ E++++ ++E LN ++ Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E + +D +I +LR+ L+ ++YI+TV G GY Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAP-FQCEHYIQTVRGSGYRF 223 >gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Psychrobacter sp. 1501(2011)] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60 IL+IEDD LA I L + V+ G++G+++ K D IILDL L D+ G Sbjct: 5 ILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64 Query: 61 EVLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 +V + +R P+ +L+ D+V GL+ GADDYI+KPF EL+ARIRA++ Sbjct: 65 QVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124 Query: 117 RRSRGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RR Q+ G LSV D+ V + + LT ++Q++ + L + Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184 Query: 172 EMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + + IDV I +LR + + I TV G GY + Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] Length = 233 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ I + L V + L D I+LD L G + Sbjct: 5 ILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTSGLSL 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R+LR P+ +L+ +S DKV GL++GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 65 ARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRRRA 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I L ++ + V + L E++M+ ++ L+H++ Sbjct: 125 PQLTDDEISIAGLHLDPGSHRVTGNNTLLSLGPTEFRMLHFFMTHAERVFSRGQLLDHVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L +G IETV G GY Sbjct: 185 GDHVFLEERTVDVHIRRLRKALEP-SGHDQLIETVRGSGYRF 225 >gi|307329229|ref|ZP_07608394.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885128|gb|EFN16149.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 20/241 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAAALSAILSRHGFEVTHARSGEEALQALLPDSGAPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV +R + PV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGFEVCGKIRKRTAT-PVIMVTARADVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119 Query: 118 RSRGH------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 R+ + G +++ L + V V G + LT KE+ ++ LL+ R Sbjct: 120 RTAPQDTGHGADEGPDGPHPPLRLGPVTIELPTRQVSVNGTTVSLTRKEFDLLALLAQRP 179 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++ ++ E + ++V + LR KL IETV G GY L + Sbjct: 180 GVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKL----RMPALIETVRGVGYRLVAPS 235 Query: 226 K 226 + Sbjct: 236 R 236 >gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ A+ + I +L S + V G++G+ L + D I+LDLGL DI G E+ Sbjct: 7 VLIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSHVPDLILLDLGLPDIDGIEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR TPV ++S +KV L GADDYI KPF EL+ARIR +R S Sbjct: 67 LKNLR-QWSKTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMRHSPQA 125 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G L+++ +TV G +IHLT EY+++ LLS LT + + Sbjct: 126 AGTEVWGEEKVTIGKLAIDYGKRTVYKAGEKIHLTPIEYKLLVLLSKNAGKVLTHDFIIR 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E + V + +R+K+ G YI T G GY + E + Sbjct: 186 EIWGV-YTEESHTLRVNMANIRRKIEANPGAPQYILTEMGVGYRMAEEVTE 235 >gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 126/235 (53%), Gaps = 9/235 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ IL+IED+ +A ++++ L+ E + V V G+ G+E D I+LD+ L + Sbjct: 1 MKKSILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVMLPGLN 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EVLR +R I P+ +L+ + DKV GL GA+DYI+KPF EE++AR+R +R Sbjct: 61 GIEVLRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRH 120 Query: 119 SRGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 SVNL+ + V + +I LT KEY ++ L KN L+++ Sbjct: 121 RAIVQDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ E E ++DVFI LRKKL I+T+ G GYV+R++ + Sbjct: 181 NILLTVWGYDYEGETNVVDVFIGHLRKKLEEDTTSS-LIQTIRGVGYVIRKDQHE 234 >gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] Length = 229 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F D + I D ++LD + G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V++ ++ PV +L+ ED+V+GL+ GADDY+ KPF+ +EL+AR++AI R Sbjct: 64 VIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I L ++ + V I + EY+++ ++E LN++ Sbjct: 124 SPMSTEDIIEMNGLVLDPTSHRVTSNEIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGANVYVEDRTVDVHIRRLRKALELD-GHDKMVQTVRGTGYRF 225 >gi|254466018|ref|ZP_05079429.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] gi|206686926|gb|EDZ47408.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ L E+F+V+ + G+ +E K +D IILD+GL D G Sbjct: 6 KILLVDDDEDLREALSEQLVMTEDFDVFEAENGQSAMERAKEALYDLIILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + +P+ +L+G S D + GL +GA+DY+SKPF L+ARIRA +R+ Sbjct: 66 ELCRLMRKQGVKSPILMLTGHDSDADTILGLDAGANDYVSKPFKFPVLLARIRAQLRQHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 126 QSEDAVFALGPYTFKPAMKLLITEDERKIRLTEKETNILKFLYRSSDGVVPRDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 227 >gi|187778087|ref|ZP_02994560.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC 15579] gi|187775015|gb|EDU38817.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC 15579] Length = 240 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+I+D++ + I +LK E F +Y EDG++ E D +ILD+ L D G+ Sbjct: 10 KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVMLPDGEGY 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R P+ LS DK+ G G DDYI+KPF+ +EL R++A +RR Sbjct: 70 ELCKTIRAKSKV-PILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 GHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N+ + G I L KE +I + N ++KE Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKRDGEIIELKPKELALITFFAKHPNQIISKEKIC 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ I V I +LR+K+ Y+ V G GY L Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235 >gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 261 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +I + LK+E V G + + + + E II+D+ + + G + Sbjct: 9 VLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEALMVLEEEEVHLIIMDIMMPRMDGIKA 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ +LS S DK+ GL GADDY++KPFN EL+AR+++ +RR Sbjct: 69 TFKIR-ESKKIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYIRF 127 Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V N DAKT V G + LT EY++++LL K + E Sbjct: 128 GNYKENKNAIVVRGLTLNKDAKTAMVDGKEVSLTLTEYKILKLLMENKGRVFSIEHIYES 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I ++R+K+ Y++ VWG GY + + Sbjct: 188 VWQEPFYNGENTVAVHIRRIREKIEINPREPEYLKVVWGIGYKIEKQ 234 >gi|332365635|gb|EGJ43394.1| two component response regulator [Streptococcus sanguinis SK355] Length = 225 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L S+ +LK E+F+V GE+ +E + ++D IILD+ + + GF Sbjct: 1 MKLLLVEDEADLNRSLTKLLKKEHFSVDSAFDGEEALEFLEMLDYDLIILDIMMPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R A V +L+ S+EDK+RGL GADDY+ KPF EEL+AR+RA++RR + Sbjct: 61 AFLEKIRQAGKQVIVLVLTARDSLEDKIRGLDLGADDYLVKPFEFEELLARLRALLRRQQ 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G++ ++L K V + LT KEY+++E L+ ++ L++E +H++ Sbjct: 121 RELVSQKIDLGEIVLDLTKKAVLKDDQVLELTAKEYEVLEYLARNQDHILSREQIRDHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E E IIDV I +R+K+ ++ I T G GYV+ Sbjct: 181 DFDYEGESNIIDVLIKNIRRKIDQD-KKQSIIHTKRGVGYVI 221 >gi|313124626|ref|YP_004034885.1| response regulator consisting of a chey-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281189|gb|ADQ61908.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 228 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV--- 116 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++ Sbjct: 61 IDVVKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 117 -RRSRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + ++ G L +N D+ V V+G I LT E+ ++ LL+ N + + Sbjct: 120 RKQVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227 >gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 200 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 82/200 (41%), Positives = 125/200 (62%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+ L + + LK ++V GE+ ++ ++ E+D +ILD+ + + GF Sbjct: 1 MKILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR T V +L+ S +DKV+GL GADDYI KPF+ EL+ARIRA+VRR Sbjct: 61 EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + +V GDL ++ K+V G +I LTGKEY+++E L KN L+++ H++D Sbjct: 121 GNSSNKLVIGDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKK 200 E + IIDV I +RKK Sbjct: 181 FDYEGDSNIIDVLIKNIRKK 200 >gi|209963769|ref|YP_002296684.1| KDP operon transcriptional regulatory protein KdpE [Rhodospirillum centenum SW] gi|209957235|gb|ACI97871.1| KDP operon transcriptional regulatory protein KdpE [Rhodospirillum centenum SW] Length = 227 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L + V + G + + L + D +ILDLGL D+ G E Sbjct: 3 RILVVDDEAQIRRFLRISLAANGHAVLEAETGAEAVALVRAEAPDLVILDLGLPDMDGQE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRSR 120 V+ A+R P+ +LS + DKV L GA+DY++KPF EL+AR+R A+ R + Sbjct: 63 VVSAIR-EIGRVPILVLSVRTGETDKVEALDRGAEDYVAKPFGIAELMARVRVALRRAPQ 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++V G + ++LD + VE G + L+ +E ++ +L+ + LT + L ++ Sbjct: 122 DPRPAVVVAGGVMIDLDRRVVERDGGEVRLSRREQDLLFVLARSADHVLTHQQILREVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + V++ +LR+KL G I T G GY LR + Sbjct: 182 PAHVEDTAYLRVYVNQLRQKLEPDPGQPALIVTEPGVGYRLRTDG 226 >gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system [Geobacillus thermodenitrificans NG80-2] gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system [Geobacillus thermodenitrificans NG80-2] gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD++LA IE L+ E + V E+G L FD IILD+ L D G++ Sbjct: 3 KLLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINLPDGSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R A P+ L+ + + + GL+ G DDYI+KPF ++RI+A++RRS Sbjct: 63 LCKHIR-ATSDVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 ++ +G ++V+ A TVE G +I L+ +EY+++ L R T ++++ L L Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + V+I +LR+K+ + YI T G GY + E Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGYKWNKEVTRE 231 >gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905] gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905] Length = 230 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD+ + IE+ LK+E +NV G D I+ + E IILD+ + ++ G Sbjct: 6 VLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEVHLIILDIMMPNMDGITA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS + DK+ GL GADDY++KPF+ EL+AR+++ +RR Sbjct: 66 TFKIRAERNI-PIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L+++ DAK + ++G + LT EY++ ELL + Sbjct: 125 GTYSEGATKVEIDGLTLDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+ V I K+R+K+ Y++ VWG GY + + Sbjct: 185 VWNEEAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230 >gi|325272774|ref|ZP_08139118.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324102081|gb|EGB99583.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 232 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD LA L++ F V V G + + D +ILDL L G Sbjct: 7 RILIVEDDPRLAELTAEYLQANGFEVAVEGDGARAVRRIVDSQPDLVILDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ +L+ S D++ GL GADDY+ KP L+ARI+A++RRS Sbjct: 67 ICRRARNQYPG-PILMLTARSDELDQIHGLDLGADDYVCKPVRPRLLLARIQALLRRSEA 125 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L ++ + + I LTG E+ ++ LL+ L++E L Sbjct: 126 LDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLSREQIFTALR 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + ID+ I ++R K+ + I+T+ +GY+ A Sbjct: 186 GVGYDGQDRSIDIRISRIRPKIGDDPLQPRLIKTLRSKGYLFVGEAP 232 >gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591] gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 243 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 3/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA + L++ + + GE+ + + I+LDL L G + Sbjct: 16 VLIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLMLPGRDGLTL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R + P+ +++ S D++ GL+ GADDYI KP++ E+VAR++ ++RR R Sbjct: 76 CRAIRG-FSNVPIIMVTARSDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134 Query: 123 AQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L + ++ + G + LT E+++++ LS ++E L+HLYD Sbjct: 135 HEPLPNDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ID I LR+KL ++I TV+G GY A E Sbjct: 195 DYRVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWEAAASQE 242 >gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17] gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17] Length = 230 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + + L D I+LD L G E+ Sbjct: 6 ILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ + P+ +L+ ++K+ GL+SGADDYI+KPF+ EL+AR++A+ R + Sbjct: 66 ARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRRST 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + G L+++ + V Q ++ L EY+M++ ++ ++ L+ ++ Sbjct: 126 PAGVDSALEVGGLTLDPLSHRVSSQFGQLELGPTEYRMLQFFMSHQDRVYSRSQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I +LRK L I+TV G GY + Sbjct: 186 GANVYLDERTVDVHIRRLRKALGTHHDH--LIQTVRGAGYRFSAD 228 >gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] Length = 229 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L+++ F V + GE+ + L + D I+LD + ++ G E+ Sbjct: 8 VLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEI 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R P+ +LS S DKVRGL++GADDY+ KP++ EL+AR+R R Sbjct: 68 CRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + L E++++ + ++E L+ ++ Sbjct: 128 PATVGMRLEFDDIILDAETHKVSRSEQPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ G + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQHGGD-DPVRTVRGAGYAL 228 >gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 224 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 117/218 (53%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD I +L+ +N +V G + + L + FD ++LDL + ++ G+++ Sbjct: 4 ILVVEDDVNTQRLICAVLQRGGYNSHVAGNGIEALNLMEERHFDLVVLDLMMPEMDGYQL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR A + P+ +++ I+ K G G DDY++KPF+++EL+ RI+A++RR++ Sbjct: 64 CEDLRSAGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRRAQIA 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +V G+ ++ +A TV +I L KE+ ++ L N T+ L ++ Sbjct: 124 NERRLVVGETVLDYNALTVIRGNQQISLPQKEFYLLFKLLSYPNKIFTRLQLLEEIWGPD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + ++V I +LR K ++ + I TV G GY Sbjct: 184 TETDDHTLNVHINRLRDKFRDSPDFE--IVTVRGLGYK 219 >gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] Length = 225 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ I L+ E F V + G++G+ + E+ I+LD L +I G Sbjct: 1 MKILVIEDDQTTREFIAKALEQEGFIVDNSGDGKEGLMMAISCEYQLIVLDRMLPNIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV ILS + S++ +V GL +G+DDY++KPF EL+ARI I+RR+R Sbjct: 61 KILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRNR 120 Query: 121 GHAQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +NL ++ V + + I L KE+ ++ L+ N +++ Sbjct: 121 PIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEAA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +IDV I KLRKKL G N IETV G GYV+R+ Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLEQ-GGAINLIETVRGAGYVIRQ 224 >gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 229 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +++ +K+E + G++ + + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVVREVRKDSSL-PILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQSLIV----TGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L +N D+ V + G + LT E+ ++ LL+ N + + Sbjct: 120 EKDMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225 >gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DD+ + + L+ E + V+ + GE+ L ++D+ + G+ Sbjct: 2 IHILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHKDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +R + P+ +L+ +EDK +G +G DDY++KPF +EL+ RI+A++RR Sbjct: 62 EVCEEIR-SYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +IV + ++ + V G + L KE++++ L+ T+E ++ ++ Sbjct: 121 VVNEKMIVLNNTFIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + IDV + +LR++ + I TV G GY L AK Sbjct: 181 ADFNGDNRTIDVHVKRLRERFEHTDD--FVITTVRGVGYKLEVKAK 224 >gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 223 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDD L +L + V G++ ++ + +D II D+ + ++ G+E Sbjct: 3 KILIAEDDLELRQLFRHVLLKNGYTVKGVSDGQEALDALEKDYYDLIISDIMMPNMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R+LR A S PV +++ + +D G SG+DDY+ KP N ELV R+ A++RR++ Sbjct: 63 LVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALLRRAQM 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD + D+ TV + L KE+ ++ + T++ ++ ++ Sbjct: 123 INERKQRIGDTILECDSLTVSTSSESMVLPQKEFMLLYKMVSFPGKIFTRQQLMDDIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + +DV I +LR++ + K I T+ G GY Sbjct: 183 DSASDAHTVDVHIGRLRERFRDNPDFK--IVTIRGVGYK 219 >gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 225 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + ++ L++E + V+ G + + D ++LD+ L G EV Sbjct: 4 VLVVEDEPMINQAVTDRLRAEGYTVHQAHDGPAAVAAFTEHAPDLVVLDVMLPGFDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 A PV +L+ D + GL GADDY++KPF E+VAR A++RR Sbjct: 64 -CRRIQAIRPVPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVERA 122 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + ++ A+ V V G +HLT E+ ++ L+ ++E + Sbjct: 123 AELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQLMG 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D + +D + LR K+ A + TV G GY L + Sbjct: 183 EVWGWADASGTRTLDSHVKSLRAKIGAA-----RVRTVHGVGYALED 224 >gi|326329444|ref|ZP_08195768.1| DNA-binding response regulator [Nocardioidaceae bacterium Broad-1] gi|325952770|gb|EGD44786.1| DNA-binding response regulator [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++DDKA+ S+ L+ + V + G + + + D +++D+ + + G E Sbjct: 2 LVVDDDKAVRESLRRSLEFNGYVVALAGDGAEALAGIANHGPDVVVMDVMMPRLDGIEAT 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 +ALR A P+ +L+ ++ D+V GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 62 KALRAAGNDVPILVLTARDAVGDRVDGLDAGADDYLTKPFALEELLARLRALLRRAAPIG 121 Query: 124 QSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL++N + V I LT E+ ++E+ R L + L ++ Sbjct: 122 EEDEETLSFADLTMNTTTREVTRGDRAIELTRTEFTLLEMFLRRPRRVLDRSFILEEVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++V++ LR+K + A G I TV G GYVL+E Sbjct: 182 YDFPTTANSLEVYVGYLRRK-TEAEGEARLIHTVRGIGYVLKEP 224 >gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC BAA-1498] Length = 222 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + +K + GE L +DA+ILD+GL+ + G Sbjct: 1 MRILIVEDDRDLNHQLAKAIKDAGYVFDSAFNGEYAYFLGSTESYDAVILDIGLSGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ R S PV +L+ DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS Sbjct: 61 QVVKKWRKEGYSMPVLMLTVCDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++ V + G I LT E++++ L + ++K + HLYD Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIDGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKKL + IETV G GY ++ Sbjct: 181 QDFDKDSNTIEVFVRRLRKKLGVDS-----IETVRGLGYRIK 217 >gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL +DD+ + + L+ E + V+ GE+ L ++D+ + G+ Sbjct: 2 IHILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHKDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +R + P+ +L+ +EDK +G +G DDY++KPF +EL+ RI+A++RR Sbjct: 62 EVCEEIR-SYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +IV + S++ + V G + L KE++++ L+ T+E ++ ++ Sbjct: 121 VVNEKMIVLNNTSIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + IDV + +LR++ + I TV G GY L AK Sbjct: 181 ADFNGDNRTIDVHVKRLRERFEHTDD--FVITTVRGVGYKLEVTAK 224 >gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a str. 301] gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a str. 2457T] gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str. 2457T] gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6] gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272] gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304] gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227] Length = 219 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV L+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 232 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+ E + V G ++ + D I D+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANPPDLAIFDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++AI+RR+ Sbjct: 64 LRRLR-QKSDIPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRANPK 122 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G L ++ + T +G + LT E+ +++ L+ R ++ Sbjct: 123 EAAAQKETEAKVLERGLLVMDPERHTCTWRGDPVVLTVTEFLILQSLAQRPGVVKSRNAL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY +E Sbjct: 183 MDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDPDFEMIETLYGVGYRFKE 231 >gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L + L++ ++ + G D +E + + I+LDL L G + Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLMLPGCDGLTL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +++ S D++ GL+ GADDYI KPF+ E+V R+R ++RR Sbjct: 73 CRTIR-QFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131 Query: 123 AQSLIVTGDLS----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L ++ G + LT E+++++ LS ++E L+ L Sbjct: 132 NDGLKAVEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGKVFSREALLDKL 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 YD + ID I LR+KL ++I TV+G GY +E Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241 >gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGQYLRQGLTEAGFVVDLVGNGLDGQHLALNESYDLIILDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +L +LR A+ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 RILLSLRAAESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I GDL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 VQMGLDRIQVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV I +LR K+ + I+TV G GYVL E Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDF-DAKLIQTVRGMGYVLEAPEGQE 228 >gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264] gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264] Length = 224 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ +E+ LK E F+V+ G++G+ + K+ +D I+LD+ L + G E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ I DK+ G GADDY++KPF+ EEL+ARI+A++RR++ Sbjct: 64 VCKRIR-EGSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 HAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +N V I L+ +E+++++ L L K L+++ L ++ Sbjct: 123 TVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+D++I LR K+ + + +I+TV G G++ + Sbjct: 183 GFDYIGNDNILDLYIKYLRDKV-DKPYERKFIQTVRGIGFIFK 224 >gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 239 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|221067068|ref|ZP_03543173.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712091|gb|EED67459.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 227 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + L + + G DG+ + E+ +ILD+ L + G+ Sbjct: 1 MRVLIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHMALQGEYSLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 +VL+ALR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I R Sbjct: 61 QVLQALRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL ++L + V G R+ LT KE+ ++ELL R L + + + ++ Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +I+V + +LR K+ + I+TV G GYVL ++ Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKI-DEGHSIKLIQTVRGMGYVLDVPEEE 227 >gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri 202-4] gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22] gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri 202-4] gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22] Length = 236 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 122/235 (51%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++EDD ++A +++ E + V + G + +E+ K + +D + LDL L G Sbjct: 3 KILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGIEAVEMFKAHPDSYDIVTLDLNLPRKDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ RRS Sbjct: 63 MEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122 Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170 R G L ++ D + V + + LT KE+ ++ ++ + + Sbjct: 123 RIEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +D I KLR+KL A G ++TVWG GY ++ Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDSE 235 >gi|257065604|ref|YP_003151860.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256797484|gb|ACV28139.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 223 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ L ++ L + + G++ ++L ++D IILD+ L GF Sbjct: 1 MKVLIVEDERKLLRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + +L+ S I+D+V+GL GA+DY++KPF+ +EL AR+R+++RR Sbjct: 61 EVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSLLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I ++ + + V +G + LT KE +IE L L + ++ E +NH++D Sbjct: 121 IMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELMNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V + LRKK+ A G KNYIE V G+GY + E Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKATG-KNYIENVIGKGYKIYE 222 >gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a str. 301] gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a str. 2457T] gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5 str. 8401] gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella flexneri 2a str. 301] gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella flexneri 2a str. 2457T] gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5 str. 8401] gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri 2002017] gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str. 2457T] gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671] gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71] gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71] gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6] gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218] gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304] Length = 240 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + G+ + + D I+LDL L G Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L ++ +G + LT E+++++ LS ++E LNHLY Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +++I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 >gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19] gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 6 str. 870] gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 2 str. 86/8/59] gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 5 str. 513] gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 3 str. 686] gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M163/99/10] gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis B2/94] gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M644/93/1] gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M13/05/1] gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 4 str. 292] gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M292/94/1] gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. Rev.1] gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella neotomae 5K33] gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 3 str. Ether] gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 9 str. C68] gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19] gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] Length = 228 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADSIRTVRGAGYSF 227 >gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 251 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 11/228 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+ LA + L+ E F V D G D I + + + D +ILD+GL I G EV Sbjct: 21 LVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGLPGIDGLEVC 80 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120 R LR + V +L+ + D V GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 81 RQLRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVLQ 139 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G LS+++ A+ V + +I LT E+ ++E LS R L++ Sbjct: 140 SATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLSRRQ 199 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + DG ++DV I LR+KL + A YI TV G GY + Sbjct: 200 LLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 247 >gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] Length = 230 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A ++ L++E F V + G++ + + + D ++LD L ++ G E+ Sbjct: 9 VLVVEDESAQREVLQYNLEAEGFRVVMAVNGDEALLFLREEKPDLVVLDWMLPNVSGIEI 68 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R ++ S P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+R +RR+R Sbjct: 69 CRRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMARLRTQLRRTR 128 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 V D+ ++ V G + L E++++ L + T++ L+ ++ Sbjct: 129 PATMGERLVFDDIILDAAEHRVFRDGQPLKLGPTEFRLLSTLMEKPGRVWTRDQLLDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV + +LRK L GG + + TV G GY L Sbjct: 189 GRDIYVDTRTIDVHVGRLRKALMVN-GGADPVRTVRGTGYSL 229 >gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] Length = 278 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + + L++E F+V + G D L EFD +LD+ L D+ GFE Sbjct: 46 RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R + PV +L+ S DK+ GL GADDY+ KPF ELVAR +A +RR Sbjct: 106 LLRTIRTE-RTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164 Query: 122 HAQSLI-----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + L +N DA+TV V + T EY ++ L+ + + Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++D + V I LR+KL + A +I+ +WG GY + + Sbjct: 225 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 278 >gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 115/235 (48%), Gaps = 7/235 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL ++D+ + +E+ L+ ENF + G+ ++ K +D I+LD+ L D+ GFE Sbjct: 6 ILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLSGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ +S S+ DK+ GL G DDYI+KPFN E++ARI+AI+RR + Sbjct: 66 LCTEIR-KHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQKI 124 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G LS + ++ T+ V+G + T KE +++ N T Sbjct: 125 MENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ E K + + I KLRKK+ + I + G GY + CE Sbjct: 185 LVWGNDVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKFIPPNEALACE 239 >gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 12/226 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+ + + +MLK++N + G + +E+ K + D I+LD+ + + G Sbjct: 6 VLIVDDDENIRELLTIMLKNQNIDSLCAKDGIEALEILKSNKIDLILLDVMMPRMDGMMA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R ++ P+ ILS DK+ GL GADDYI+KPFN L+A+IR+ +RR + Sbjct: 66 CMKIR-ESLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYKEF 124 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + D+ +N+D TV++ I+LT E++++ L+ K+ L+ + Sbjct: 125 NSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + + V I +LR+KL YI+TVWG GY + Sbjct: 185 NVWEEPYMEFDRTVTVHIRRLRQKLKKD-----YIKTVWGVGYKIE 225 >gi|299139571|ref|ZP_07032745.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598499|gb|EFI54663.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 225 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ + ++ L + V+ + G EL + + +I+DLGL D G Sbjct: 1 MRLLLVEDEPEIQSFVKQSLMEAGYEVHTAEDGSAATELASKHVYHGLIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + +++PV ILS S++D+V+GL+ G DDY++KPF EL+AR+R ++RR+ Sbjct: 61 DLILQLRRSGVTSPVLILSARRSVDDRVKGLELGGDDYLTKPFAIAELLARMRNLLRRNS 120 Query: 121 GHAQSLIVTGDL--SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+ + +++ + ++L+ +E+ ++E L +T+ M L + Sbjct: 121 SQAEDAMRLRVCDLELDMLKRRATRGDEVLNLSPQEFVLLEYLCRHAGRVVTRSMLLKEV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + R +P+ ++DV I +LR K+ A I+T+ G GYVL+ Sbjct: 181 WGMRIQPDTNVVDVHIYRLRGKIDTAGREP-LIKTLRGIGYVLK 223 >gi|294055543|ref|YP_003549201.1| two component transcriptional regulator, winged helix family [Coraliomargarita akajimensis DSM 45221] gi|293614876|gb|ADE55031.1| two component transcriptional regulator, winged helix family [Coraliomargarita akajimensis DSM 45221] Length = 222 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 132/220 (60%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ L ++ L+ E F GE+G+ +++DAI+LD+ L I G+ Sbjct: 1 MRVLVIEDEAELRETVVETLREEGFATDYCGDGEEGLYKALHWDYDAILLDIMLPKINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R A+ TPV +L+ I+D+++GL GADDY+ KPF+ E++AR RAI RRS Sbjct: 61 EVLKRIRDAQKETPVMMLTARDGIDDRIKGLNQGADDYLPKPFDLAEMIARTRAIARRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G++ VN ++ V + G I LT +EY + EL + + +T++ HL+D Sbjct: 121 GQRNPELRIGNVIVNTTSRQVTLNGQPIELTAREYALTELFVRKVDEVVTRDYIYEHLFD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ I+DV+I KLR+KL K +I T+ G GY+ Sbjct: 181 ENEDSLSNILDVYIYKLRQKLG-----KQFIRTMRGHGYI 215 >gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G++ +++ IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] gi|133738671|emb|CAL61716.1| Transcriptional regulatory protein CusR [Herminiimonas arsenicoxydans] Length = 230 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L +D IILD+ L DI G+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L+ALR A + P L+ + D+V+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL ++L + G R+ LT KE+ ++E L K L + + + ++ Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + +IDV I +LR K+ + I T+ G GYVL + Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDD-YEPKLISTIRGVGYVLEDP 224 >gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 237 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 137/237 (57%), Gaps = 2/237 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L +++ L NF + V GEDG+ + +DA I+D+GL + G Sbjct: 1 MRILLVEDDLELQKNLKQHLLDANFTLDVASDGEDGLFQGCEHNYDAGIIDVGLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR ++ P+ IL+ S +DKV GL +GADDY++KPF+ +EL+AR+ A++RRS Sbjct: 61 ELITRLREQEVDFPILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G S+N V+ GH + L+ EY++ E L +K + + H+YD Sbjct: 121 GKASPLVHNGPFSINTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK-DETCEYLETA 236 + + +I+VFI +LRKKL IET+ G+GY L A+ ++ E A Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQLGLIETLRGQGYRLIPLARCEQGTEDKPDA 236 >gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 107/217 (49%), Gaps = 1/217 (0%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 ++DD + + + L++E V G D + + D +I+D+ + ++ G+ + Sbjct: 2 VDDDAHIRELVRVFLQNEGLEVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWALCEE 61 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 +R P+ +L+ KV+G G DDY+ KPF EL+ R+++I++R R Sbjct: 62 IRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIALSQ 121 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 ++ G++ +N V++ G I L KE++++ L+ T ++E + ++ E Sbjct: 122 VVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWGYDYEG 181 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + IDV I ++R++ G I T+ G GY L Sbjct: 182 DERTIDVHIKRIRERFPQEISGF-VIRTLRGLGYRLE 217 >gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1] gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1] Length = 227 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D+ + + L SE +N+ G + I K + II+D+ + ++ G Sbjct: 6 IKILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKKIKPHLIIMDVMMPEMDGI 65 Query: 61 EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E +R +T + L+ +V G +GADDYI+KP + LV++++A++RR Sbjct: 66 EACENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 119 SRGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ + G++ +N + +E +G I L KE++++ LL+ R +E L+ Sbjct: 126 LKSEDENAQILTVGNIVINREEYKIEKEGVEIILPRKEFELLSLLASRPEKVFKREEILD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + IDV I KLR+K+ + +TV G GY Sbjct: 186 KVWGNEVIVGGRTIDVHIRKLREKIGEN-----HFKTVKGVGYK 224 >gi|15888321|ref|NP_354002.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15155989|gb|AAK86787.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 252 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + GE G+ + +D +++D L G Sbjct: 28 MKILVIEDDLEAAAYMTKAFREAGIVADHASDGESGLFMGCENAYDVLVIDRMLPRRDGL 87 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 V+ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+ARI R+ Sbjct: 88 SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 148 KPEQDMIYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +P+ +IDV + +LR K+ ++T+ G GY++++ Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFEKP-LLKTIRGAGYMMKDEG 252 >gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272] gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227] Length = 240 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + G+ + + D I+LDL L G Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L ++ +G ++LT E+++++ LS ++E LNHLY Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +++I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 >gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 230 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 7/230 (3%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD + +E+ L + GE G+ L ++D I+LDL L + G Sbjct: 1 MKQILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + LR+ K + PV +L+ S D+V GL+ GADDY++KPF+ EL+ARI+A++RRS Sbjct: 61 IEVCKKLRIKKNT-PVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLRRS 119 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 L +++D + V +I L+ KE++++ L++ ++ Sbjct: 120 DAPKVEENNSTTLNFEGLFIDIDKRKVLHNKQKIDLSPKEFELLVLMASNPGRNYSRTEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN ++ E ++ I +LR K+ + YI T WG GY E Sbjct: 180 LNIIWGYNFEGYEHTVNSHINRLRAKIESNMAQPMYILTTWGVGYKFNEE 229 >gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5] Length = 232 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + H + +L + ++ G + L + D I+LDL L + G E Sbjct: 5 KILIVEDDTDINHLLHRILMQDGYDTIQAFSGTEAKLLLRLEAPDLILLDLMLPGMSGEE 64 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R P+ +LS + +E KV L++GADDY++KPF +E++AR+ A +RR + Sbjct: 65 LIVTVREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRRYK 124 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L+++ D++ E+ G + LT EY ++ LL ++E Sbjct: 125 IEAGKTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRENL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G E ++V + LR+KLS A + YI TVWG G+ + Sbjct: 185 YEQVWKGGYYGEDNTVNVHVSNLRRKLSAADPEEEYIRTVWGIGFKM 231 >gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 246 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A +I L++E F V G + + + + ++LD+ L G E Sbjct: 20 RVLVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A+ PV +L+ D + GL GADDY++KPF+ EL AR+ ++RR Sbjct: 80 VCRRV-QAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + GDL ++ + V V +HLT E+ ++ L+ L++E Sbjct: 139 ATIAATAPRGATLRLGDLEIDHAQRRVRVHNEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A+ Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPAQ 245 >gi|110803699|ref|YP_697777.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684200|gb|ABG87570.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 234 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+K +A +IE+ LK++ +NV+ G +G+E+ + E ++D+ + + G + Sbjct: 6 VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS S DK+ GL GADDY++KPFN EL+AR+ + +RR + Sbjct: 66 VMKIR-ERYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G L VN D K V + G + +T E+++++LL + E Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 IYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234 >gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H] gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea 34H] Length = 240 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 67 ICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRRRTQ 126 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++I G +NL + ++ + LT E+ +++ L L+++ Sbjct: 127 EAPGAPALEENVISFGGYHLNLATREMQKDDISMPLTSGEFAVLKALVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + IDV + +LR+ L Y++TVWG GYV + Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPAKPRYLQTVWGLGYVFVPDG 237 >gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104] gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium subsp. avium ATCC 25291] gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium 104] Length = 226 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V G + ++ D +ILDLGL DI G + Sbjct: 3 RVLVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGLPDISGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL LR ++ PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 63 VLAGLRG-WLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 122 ASEMEQPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + V++ +LR+KL N ++ T G GY Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLENDPSHPKHLLTESGMGYRFE 225 >gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 219 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 116/217 (53%), Gaps = 2/217 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L +D+ + +EL L +E + V + G D ++L + + +LD+ + ++ GFEV Sbjct: 1 MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVMMPEMNGFEVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 ++L+ + + V +L+ ++D+V+GL+ GADDYI KPF+ EL+ARI A +R Sbjct: 61 QSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLRNQFPDL 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 +V G V+ K + Q + L+ EY++++ L L L+K L+ ++ Sbjct: 121 LGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWGYDF 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E I++V+I LR+KL + I T+ G GY Sbjct: 181 GGEDNIVEVYIRSLREKLKD--KEHRVIRTLRGVGYR 215 >gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 231 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++D++ + + L E + V GE+ I++ K + D ++LDL L I GFE Sbjct: 5 HVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGIDGFE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + P+ +L+ + D + GL+ GADDY++KPF+ L ARI+AI+RR Sbjct: 65 VARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILRRD 124 Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +L V+ + V V + LT E+ ++ L R T+ ++ Sbjct: 125 MLAFPEESSAVKIHNLVVHPGRREVLVDDKPVRLTFTEFGILNALVRRPGWVFTRTQLVD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +DV I LR+KL A Y+ETV G GY +++ Sbjct: 185 EVRGSEHLVTDRSVDVQIVGLRRKLGPAGA---YVETVRGVGYRIQDE 229 >gi|229160850|ref|ZP_04288840.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803] gi|228622587|gb|EEK79423.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803] Length = 229 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L+ + V + GE G++ ++D +ILD+ L I G+E Sbjct: 3 RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ K P+ ++S DK++GL GADDYI KPF+ E+VAR+ A + R Sbjct: 63 ICKQVRLEKDI-PILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + A+ V V G + LTGKE+ ++ ++ N +K+ Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +R K+ K+YIET+WG GY Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227 >gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM 15176] gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM 15176] Length = 233 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 R+L++ED+ ++ + L LK + V E +EL E DA +LD+ L + G Sbjct: 3 RVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + I+S DK+RGL GADDYI+KPF+ ELVAR+ A+ RR + Sbjct: 63 SLCETIRRDDNDIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALTRRIK 122 Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +V+G ++ ++ + G I LT E+Q++EL T L +E Sbjct: 123 RGSSSPKAAEEPEQLVSGPFVLDEKSRVLYKAGKPIDLTQVEFQIMELFFRNPATALVRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +VKI+DV I +LR K+ + +I TVWG GY Sbjct: 183 KILEGVWGENYFGDVKIVDVNIRRLRMKIEDEPSNPQHILTVWGYGYRW 231 >gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 245 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD+ + +++++ L + V G++ + +ILD+ L + G Sbjct: 28 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMNGH 87 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV +++ +S E+++R + ADDY++KPF + L+ R+ A++RRS Sbjct: 88 ELLREFR-KLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSG 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ L G L++ + V + LT KE++++ LL TL+ E+ L+ ++ Sbjct: 147 AVAKELHY-GKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 205 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + I LR KL + I+TV G GY L E + Sbjct: 206 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 245 >gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726] gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 268 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + +I+DV I LR+KL G+ +I+TV G GY + + Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGYRVEQP 268 >gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D++ + ++L L + G + +EL + FD I+LD+ + ++ G+ Sbjct: 2 IKILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKNFDIILLDVMMPNMDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + P+ +L+ + D V+GL GADDYI+KPF+++ L+ARI A++RR++ Sbjct: 62 DTCYQIR-QLCNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVLRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + TV V +I LT E+ ++ L N +++ + ++ Sbjct: 121 KDGFITFN--GIEWDKTKHTVTVYNEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLREN 224 + + E + +D I +R KL + Y+ET++ GY + Sbjct: 179 YQTDIEYRTVDSHIRNIRDKLRKKDFPVEKYLETIYKVGYKWKSE 223 >gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 223 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++ + ++L L + G + +EL + +FD I+LD+ + ++ G++ Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R + P+ +L+ + D V+GL GADDYI+KPF++ LVARI AI+RR++ Sbjct: 63 TCYQIR-QISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + TV V G RI LT E+ ++ L KN +++ + ++ Sbjct: 122 DGFVSFNG--IEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNKNRAYSRDDLIEKIWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLREN 224 + + E + ID I +R KL ++Y+ETV+ GY + Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYKWKSE 223 >gi|227893254|ref|ZP_04011059.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227864937|gb|EEJ72358.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 240 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 15/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 RIL++EDD ++A + + K E + + G + +++ K ++D I LDL L G Sbjct: 4 RILMVEDDTSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 64 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPLALIARIKALHRRI 123 Query: 120 RGH----------AQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTT 168 I T L ++ + + V + LT KE+ ++ ++ + Sbjct: 124 MMKEEIAPKTEAKQDYDIETNHLKISKNRREVMFDDQPVTDLTPKEFDLLYTMAQKPKQV 183 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--QVIQTVWGVGYKFDDS 237 >gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704] gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704] Length = 221 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ ED+K + I +K + D G D + + K D ILD+ + + GF V Sbjct: 4 VLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIMMPHLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + R + P+ L+ +DK++G GADDY++KPF+ + L+A++ A+ R S Sbjct: 64 CKIAR-EMYNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRRSSSE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G+L++ + +V V G + LT KE++++ KN ++E LN ++ Sbjct: 123 NTPETLTVGNLTLIPTSHSVMVAGDDVDLTYKEFELLRFFMQNKNQVFSREQLLNRIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D I LR+KL YI T+ GY Sbjct: 183 DFEGNTRTVDTHIKTLRQKLG---AEGRYIVTLIRSGYKFE 220 >gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 231 Score = 170 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 138/231 (59%), Gaps = 1/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +++ L N+N+ V D GE G+ Y +DA I+D+GL + G Sbjct: 1 MRVLLVEDDIELQTNLKQHLVDANYNIDVADDGEIGLFQGTEYRYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR +I P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 ALIKTLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G S+N + ++ I L+G EY++ E L ++K + H+YD Sbjct: 121 GKASPVVNNGPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + +I+VFI +LRKKL + IET+ G+GY L + K E + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NSFSLIETLRGQGYRLTQMQKTEQSD 230 >gi|323529546|ref|YP_004231698.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386548|gb|ADX58638.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ +A + ++ E + + G +D ++LDLGL G Sbjct: 11 MRLLLVEDDEMIAEPVLDSMRREGYAIDWAQDGRAAELSLGNGVYDLVLLDLGLPRKDGI 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL A R PV IL+ +++D++RGL +GADDY+ KPF+ EL AR+RA+ RR Sbjct: 71 EVLNAYRSQGGEAPVIILTARDAVDDRIRGLDAGADDYLVKPFDLNELAARVRALSRRRT 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G+L+++ A V G + L +E+ ++++L TK + LY Sbjct: 131 GQKQPVYTHGELTLDPAAHEVTKSGVPVPLVPREFTLLQVLIEAPARVFTKAELEDKLYG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E I+V + LR+K+ I TV G GY L+ Sbjct: 191 WGEEVGSNTIEVHVHSLRRKIGA-----EQIVTVRGVGYRLK 227 >gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 12/235 (5%) Query: 1 MR------ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL 54 M+ ILL+ED++ L +++L L+ E + V D G ++ K FD IILD+ L Sbjct: 1 MKEATKASILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIML 60 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL-----V 109 ++ G V +R+ P+ LS +S D+V GL+ G DDY++KPFN EEL Sbjct: 61 PEMDGIAVCENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEK 120 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTT 168 ++ + + ++ G ++ A+ G L+ KE +++LL K Sbjct: 121 LIVKNKRIQDKDSVSTVYHFGSNEIDFAAQECIGKDGKHYELSKKETMLLKLLIENKGEV 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +T+E L ++ P + ID FI RK + Y +V G GY E Sbjct: 181 VTREKILQVVWGYNVYPTTRTIDNFILNFRKYFEEDSRNSRYFHSVRGVGYKFTE 235 >gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 243 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224 + I++ +I LRKK + G IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241 >gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii ATCC BAA-894] gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894] Length = 240 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + + G+ + + D I+LDL L G Sbjct: 12 RILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KPF+ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ L ++ + + LT E+++++ LS ++E LNHLY Sbjct: 131 QRDLQAQDAQSPLIIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDDEQPFIRAVYGVGYRWEADA 236 >gi|260432324|ref|ZP_05786295.1| two component transcriptional regulator, winged helix family [Silicibacter lacuscaerulensis ITI-1157] gi|260416152|gb|EEX09411.1| two component transcriptional regulator, winged helix family [Silicibacter lacuscaerulensis ITI-1157] Length = 238 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ L E+F+V+ G+ +E + +D +ILD+GL D G Sbjct: 16 KILLVDDDEDLREALSEQLVMTEDFDVFEASDGQSALERAREAIYDLVILDVGLPDTDGR 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + +P+ +L+G S D + GL +GA+DY+SKPF L+ARIRA +R+ Sbjct: 76 ELCRLMRKQGVKSPILMLTGHDSDADTILGLDAGANDYVSKPFKFPVLLARIRAQLRQHE 135 Query: 121 GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 136 QSEDAVFILGPYTFKPAMKMLITEDDRKIRLTEKETNILKFLYRSTDGVVPRDVLLHEVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 196 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 237 >gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii ATCC 35469] gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia fergusonii ATCC 35469] Length = 219 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V G +G E +DAIILDL L I G Sbjct: 1 MRILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V I LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHIHHLRRKLGS-----GFIRTVHGIGYTLGE 218 >gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925] gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925] Length = 227 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + +++ L EN++V + G+D I+L + D I+LDL L D+ GF Sbjct: 1 MKILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V+ ++ P+ +LS + I D++ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +I G + + + + V + ++ T E++++ L+ T+E Sbjct: 121 KVKLTTNKETKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + +D+ I ++RKKL + I+T++G GY Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKL---LNHEEAIKTIYGVGYRFE 226 >gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + +E +L + ++V G +G + Y++D ++LDL L + G + Sbjct: 6 ILIVEDDADINSLLEKLLTNAGYHVRPAFSGSEGKMCLEQYQYDLVLLDLMLPGVTGEAL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ I+S +S+ D++ L+ GADD+I KPF+ E++AR+ A +RR+ Sbjct: 66 VAQIR-RSSTVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRRAVAF 124 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ ++ +GDL ++ D+ V ++ + LT +E++++ LL T+E Sbjct: 125 SEAGGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFTQ 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ E ++V I +R KL+ +YI+TVWG G+ + Sbjct: 185 VWEDAFLGEDNTVNVHISNIRSKLAKIDPDTSYIKTVWGIGFKME 229 >gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 232 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +I++ L+ E NV + G + +E+ + ++LD+ + + G Sbjct: 8 VLVVDDEKEIRDAIDIYLRGEGINVIKSGDGFEALEILDKEDIHLVVLDIMMPKLDGMRT 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 68 CLKIR-ESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126 Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 DL+++ K V ++G I LT EY+++ LL+ + + Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I ++R+K+ + YI+ VWG GY + + Sbjct: 187 VWEEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKIDK 232 >gi|116625937|ref|YP_828093.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229099|gb|ABJ87808.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 242 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ LA ++ + + G +G+E + EFD I+LD+ L + G Sbjct: 17 MRILIVEDDRKLARQLKKGVDESGHASILAFDGREGLEAAQGNEFDVIVLDVMLPKLDGI 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +I TP+ +L+ + + +D GL +GADDY++KPF+ + L+AR+RA+ RR + Sbjct: 77 SVLRQLRQTRIGTPILLLTALDTPDDISTGLDAGADDYLTKPFSFKVLLARLRALSRRRQ 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+L+ DL+++ V+ G + L+ E+ ++E+L +T+ ++ ++ Sbjct: 137 ADRQTLLRIADLALDPATHDVKRAGAMVSLSKTEFVILEILMRSSGRVITRTRLIDAVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +DVFI +LR K+ AG + TV G GY LRE Sbjct: 197 HERDVQSNTLDVFIRQLRTKIEP-AGTTKLLHTVRGIGYTLREEEP 241 >gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 132/229 (57%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L ++ I+LD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K + PV +L+ +ED+++GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALRARKQT-PVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + +++V I +LR KL + + + T+ G GYVL + D Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVLESRSDDRP 227 >gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 232 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +L + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 8 RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGFG 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR + PV L+ ++EDKV GL GADDY++KPF+ EE+V R+R I+RR+ Sbjct: 68 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 127 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL ++ D + V G + L+ E+ ++ + T L+K L H+ Sbjct: 128 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILAHV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ EV +++ ++ LR+K+ I T+ G GYV+RE Sbjct: 188 WNYDFGGEVGVVESYVSYLRRKI--DTTEPRLIHTLRGVGYVMREP 231 >gi|325273594|ref|ZP_08139816.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101272|gb|EGB98896.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L + V G D + L + + +ILD+ L + G+ Sbjct: 1 MRVLVVEDEAKTAEYLQQGLTESGYIVDRASNGVDALHLFQHNTYGLVILDVNLPKVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +VL +R + + +G + DK++GL GADDY+ KPF EL+ARIR+ R Sbjct: 61 DVLDTIRKTSRVRIIML-TGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGD 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++ R+ LT KE+ ++ LL LT+ ++ ++ Sbjct: 120 KVVDHPTLRVADLELDPGRHRAFRGDLRVELTTKEFALLRLLMSHPGEALTRSQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + I T+ G GYV+ E + Sbjct: 180 DMNFDCDTNVIDVAIRRLRAKI-DDPFENKLIHTLRGVGYVIEERS 224 >gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 267 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L+ + + L+ E + V G +++ + + DA++LD+ L D+ G E Sbjct: 43 RILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPDMDGLE 102 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR Sbjct: 103 VLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 162 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S T GDL +N +++ V G + LT E++++ L+K L+ + Sbjct: 163 STLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDRV 222 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++++++ LR+K+ G + I T+ G GYVLR Sbjct: 223 WNYDFGGQANVVELYVSYLRRKI--DVGRQPMIHTMRGAGYVLRP 265 >gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L L + ++ + G ++ + ++ D ++LD+ + ++ G+E Sbjct: 4 ILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPEMDGWET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ D V+GL GADDYI+KPF++ EL+ARI A++RRS G Sbjct: 64 CKRIR-EFSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVGK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G + D Q I LT KE+ ++ L N ++E + L+ Sbjct: 123 RSKIEFQGL-VWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWGYN 181 Query: 183 DEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222 E + ID + +R+KL +++TVWG GY Sbjct: 182 ANTEERTIDSHVKNIREKLRQVGFPIDQFLQTVWGVGYKWE 222 >gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AB058] gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] Length = 223 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR + Sbjct: 61 SVLQVLR-QFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + +++ Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV + +LR K+ + I T+ G GY + Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DEGYEPKLIHTIRGLGYKI 219 >gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT] gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT] Length = 227 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 10/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+++L + +++ L EN+ V + G+ IEL + D ++LDL L DI GF Sbjct: 1 MKILLVDDEESLLNLVKINLMFENYEVITAECGKTAIELFQTQSPDLVVLDLMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V+ A++ P+ +LS + I D++ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHAIQEINNEVPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+I G + + D + V + + T E++M+ L+ T+E Sbjct: 121 KAKLLSNKKQSSIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + +D+ I ++RKKL ++ I+T++G GY Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKLLE---HEDAIKTIYGVGYRFE 226 >gi|15603950|ref|NP_220465.1| transcriptional activator protein CZCR (czcR) [Rickettsia prowazekii str. Madrid E] gi|3860641|emb|CAA14542.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR) [Rickettsia prowazekii] gi|292571668|gb|ADE29583.1| Transcriptional activator protein CzcR [Rickettsia prowazekii Rp22] Length = 237 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 131/223 (58%), Positives = 169/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IE+ L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKVGIYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 TVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAVDPIRTVRGAGYSF 227 >gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 220 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L ++ + V + L + ++ I+LDLGL D G Sbjct: 1 MKLLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDRDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R I+ PV IL+ ++ED+V GL +GADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ GDL++NL ++ V ++ + +T KE+ ++ L +R + +E LY Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D+P ++V I LR+KL I+TV G GY L Sbjct: 181 WNDDPGSNTLEVHIHNLRRKLGKD-----RIKTVRGVGYRLE 217 >gi|238927184|ref|ZP_04658944.1| response regulator [Selenomonas flueggei ATCC 43531] gi|304437129|ref|ZP_07397091.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|238884966|gb|EEQ48604.1| response regulator [Selenomonas flueggei ATCC 43531] gi|304369888|gb|EFM23551.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD A+A L+++ F V ++ G+ G L ++D ++LD+ L GF Sbjct: 3 KILLVEDDAAIAELERDYLEADGFAVDISADGDAGKRLAMTGDYDLLLLDVMLPGADGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ ++S DK+R L GADDYI KPF+ EL AR++A + R Sbjct: 63 ICRDVR-KAYDIPILMVSARLEDVDKIRALGLGADDYIIKPFSPSELAARVKAHLARYER 121 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G L + + V + G+ + L +E+ ++ L+ +KE + Sbjct: 122 LKGSAGDAAVLRFGALEIQPQTRRVFLGGNEVILAAREFDLLLFLAQHPQVVFSKETLYD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + V I +LR+K+ +++TVWG GY + Sbjct: 182 RVWELDAMGSTATVSVHINRLREKMERDPAHPQWLQTVWGAGYRFND 228 >gi|187933115|ref|YP_001885875.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721268|gb|ACD22489.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 9/231 (3%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++DDK + +I + L +E + ++ G +++ + +ILD+ + ++ Sbjct: 1 MKNYNILVVDDDKTITEAIGVYLVNEGYKIFKAYDGIQALKVIDEEDIHLVILDIMMPNM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +R + P+ +LS S DK+ GL GADDYI+KPFN EL+AR+ + +R Sbjct: 61 NGTRTTIKIREERQI-PIIMLSAKSEDTDKILGLNLGADDYITKPFNPLELIARVNSQIR 119 Query: 118 RSRGHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R + ++V N ++K V V G I LT E++++ LL N + E Sbjct: 120 RYTKFSPLKENNNVITVAGIELNKESKEVFVDGENIRLTPLEFKILTLLMDNPNRVFSIE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ V + V I ++R+K+ Y++ VWG GY + + Sbjct: 180 EIYERVWNEPVFNNVDTVTVHIRRIREKIEINPKEPRYLKVVWGIGYKIEK 230 >gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] Length = 684 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + + L S+++ V GE+G + Y +D I+LDL L + G Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + TPV +L+ + KV GL +GADDY++KPF+ +EL+ARIRA++RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ +L ++ V G +HLT KEY ++EL + + ++ L+ Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228 + P + I LR+KL A ++ I+TV+G GY L+ + ++E Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQSGREE 230 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + +++ +L + VY + +E E + +IL + + G E Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + + R P+ L+ + + +GADDYISKP Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPI 499 >gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 239 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60 +IL++ED++++ I + LK F GE+ +E + +LD+ L I GF Sbjct: 3 KILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ + +L+ DKV GL GADDY+ KPF+ +EL+ARI A++RR + Sbjct: 63 EVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRLQ 122 Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +G + LD K I LT KE+++I+L + ++++ Sbjct: 123 PFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRDD 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LN ++ ++KI+DV I ++R+K+ N +E VWG GY R ++E Sbjct: 183 ILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRWRGGVENE 237 >gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280] gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280] Length = 219 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +D +ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|307244490|ref|ZP_07526599.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492183|gb|EFM64227.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 237 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 118/238 (49%), Gaps = 17/238 (7%) Query: 1 MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ IL+++D+K +A +E+ L ++ + V+ + G +G+++ + I+D+ + + Sbjct: 1 MKSYNILVVDDEKEIADVVEIYLLNQGYKVFKANNGLEGLKIVDKEDIHLAIIDMMMPVM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ LR K + PV ILS S D++ GL GADDY++KPF EL+AR+ + +R Sbjct: 61 DGASMIMKLR-EKHNFPVIILSAKSEEVDQIMGLNIGADDYVNKPFKPLELLARVNSQLR 119 Query: 118 RSRGHAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 R + + G L +N + +TV V + +T E++++ LL Sbjct: 120 RYTKYMNISDDEDGEKEDEGLYIIGGLELNENKRTVSVDDKPVKITPIEFKILNLLMKNP 179 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +++ + V I +R+K+ + Y++ VWG GY + + Sbjct: 180 GRVFSSEEIYEKVWNENA-INTDTVMVHIRNIREKIELDSKKPKYLKVVWGVGYKIDK 236 >gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] Length = 244 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F D + I D ++LD + G + Sbjct: 19 RILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 78 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V++ ++ PV +L+ ED+V+GL+ GADDY+ KPF+ +EL+AR++AI R Sbjct: 79 VIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRI 138 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I L+++ + V I + EY+++ ++E LN++ Sbjct: 139 SPMATEDIIEMNGLTLDPTSHRVTSNDIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 199 WGANVYVEDRTVDVHIRRLRKALETE-GHDKMVQTVRGTGYRF 240 >gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD A I L+ + G DG+ D ++D+ L + GF Sbjct: 1 MKILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR A I PV +LS SS++DK+R LQ+G DDY+ KPF+ EL+ARI+A + R S Sbjct: 61 TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + GDLS++L ++ V RI + E+ ++E L+ ++K M + H++ Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +P+ I++ +C+LR+KL + + + TV G GYVL A Sbjct: 181 EYNFDPQTNIVETRMCRLREKL-DKPFKEKLLHTVRGFGYVLEPEA 225 >gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 223 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ IE+ LK E F V G++G+ K+ +D IILDL L + G E Sbjct: 4 KILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V + +R P+ +L+ I DKV GL GADDY++KPF+ EEL+ARI+A I R + Sbjct: 64 VCKRIR-EFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + Q V DL +N V I L+ +E+++++ L L K L+++ L +++ Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+D++I LR K+ + + +I+TV G G++ + Sbjct: 183 FEYIGNDNILDLYIKYLRDKI-DKPYERKFIQTVRGLGFIFK 223 >gi|268316385|ref|YP_003290104.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333919|gb|ACY47716.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 246 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 6/237 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62 L++EDD +A +++ + + + V +EL + FD ++LD+ L D GFEV Sbjct: 11 LIVEDDADVAQALQDFFELQGYRVTHAPEAHKALELLTNAHRFDVVLLDVMLPDRSGFEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 L+ +R + TPV +L+G E ++G GADDYI KPF+ +E+ AR+RA + Sbjct: 71 LQEMRRRGLETPVLVLTGRGEREQVLQGFGLGADDYIVKPFDPDEVAARVRAILQRTQPP 130 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GD+ +N RI+ T E ++ L + +T+E L ++ Sbjct: 131 DRAPMQIYHIGDVEINFSTHEAYRGSERINFTAMELNVLRYLIHHRGEVVTREQLLRDVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + E + ID I +RKK+ YIETV+G+GY LR A+D++ T+ Sbjct: 191 HIVGDVETRTIDRHIASIRKKIEPDLRQPRYIETVYGKGYRLR--AEDQSTNSPPTS 245 >gi|158421714|ref|YP_001523006.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158328603|dbj|BAF86088.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLK-SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL++EDD L ++ L E F +D +E K D +++D+GL D+ G Sbjct: 6 KILVVEDDPELREALIEQLALQEEFETVSAGTAQDALEAAKNGAIDLVLMDVGLPDMDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R +R PV +L+G + D + GL +GA+DY++KPF L+AR+RA +R Sbjct: 66 DAVRQMRKNGFKAPVIMLTGHDTDSDTILGLDAGANDYVTKPFRFAVLLARLRAQMRSHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G S AK + +G +I LT KE ++ L T + +E L ++ Sbjct: 126 ASEDAVFAIGPYSFRPGAKMLLTDRGSKIRLTEKETAILRYLYRAGKTPVARETLLQEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNSGVTTHTLETHIYRLRQKIEPDPSNPTLLATQAG-GYKLVP 228 >gi|120405382|ref|YP_955211.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958200|gb|ABM15205.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 250 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L+++D+ LA + + L+ E + + G I + + D ++LD+ L D+ G Sbjct: 25 IHVLVVDDEPVLAELVSMALRYEGWEISTAGDGATAIAIARDNPPDVVVLDVMLPDMSGL 84 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR P+ +L+ S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR+ Sbjct: 85 EVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 144 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + IV GDL ++ D+ V G I LT E++++ + L+K L+ Sbjct: 145 VSTDTSGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNAKRVLSKTQILDR 204 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ I+++++ LRKK+ +G + I T+ G GYVL+ Sbjct: 205 VWSYDFGGRSNIVELYVSYLRKKI--DSGREPMIHTLRGAGYVLKP 248 >gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--P 58 MRIL++EDD LA + L + V G +E + +D ++LDL L I Sbjct: 1 MRILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGG 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV R +R P+ +L+ + S+ KV GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 GMEVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ + ++ +T G I LT KEY ++E L ++ ++H Sbjct: 121 APRADAPVLEAAGVLLDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDHA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D + ++ +I LR KL+ G IET G GY++ + Sbjct: 181 WDTNYQGVSNVVQTYIRYLRVKLAE-PGLPEVIETRRGYGYLIAVDG 226 >gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 222 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + + E V G + ++L K +FD IILD+ + ++ GF Sbjct: 3 RILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIMMPELDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI--VRRS 119 + +R TPV +LS D++ G + G DDY+ KPF+ +EL+ R+ AI R Sbjct: 63 ACKEIR-KYKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGG 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL V+ + V + G + +T KEY + + + LT+E + +++ Sbjct: 122 AQENKDVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I LRK L + + I T+ G GY Sbjct: 182 GYDFYGDDRTLDTHIKLLRKSLGDYS---KCIVTLRGVGYRFE 221 >gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 246 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD LA + L+ E + + G + + DA++LD+ L D GF Sbjct: 20 RVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGFA 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLRAL K V L+ ++ED+++G+ +G DDY++KPF+ EE+VAR+R ++RR Sbjct: 80 VLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAGL 139 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + GDL ++ DA+ V G I L+ E++++ L L+K L+ Sbjct: 140 ARQLDEGPRLTVGDLVMDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +++++I LRKK+ AG + I TV G GYV++ Sbjct: 200 VWSYDFGGRAHVVELYISYLRKKV--DAGREPLIHTVRGAGYVIKP 243 >gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + + V D G+ G++L + +D +ILD L + G Sbjct: 1 MRILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR +TPV L+ +++D+V GL GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQQLRSQGKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRSP 120 Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL ++ + + G I L+ KE ++ L LT E Sbjct: 121 TFEANISQERLKAADLELDPENQMAYRHGRGISLSEKEVMLLSYFMLHPGQLLTHEQIYQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 HL+ +++P ++ + LR+K+ I TV+G+GY E Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKIEADGELP-LIHTVYGKGYRFGE 226 >gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ +A + L L E + V + G IE + D IILD+ L + G+E Sbjct: 6 ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPAMDGYET 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +L+ + V GL SGADDY++KP++ +L+AR+RA++RR Sbjct: 66 CRRIR-EFSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRRIPPQ 124 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G + ++ + ++V+ I LT EYQ++ LL+ + E L ++ Sbjct: 125 RPIITAGEGLMVLDRQRRELKVKDKVIDLTPTEYQLLILLADSVGQVVPHEKLLGSIWGS 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + + V+I LR+KL + + T WG GY L E Sbjct: 185 GKESDHDSLKVYIWHLRRKLEDNPRQPKILLTEWGVGYRLAE 226 >gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 238 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED LA + L L E + E + + + D ++LDL L + GFE Sbjct: 4 RILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L R STPV I+S + ED + GL GAD+YI+KPF+ LVAR+RA++RR + Sbjct: 64 FLHKFR-KTHSTPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GD +++L + + G RI L+ KEY ++ L LT + Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++ + V+I +LRKK+ +IETV+G GY Sbjct: 183 YDEVWK-NAYGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGYRF 228 >gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 239 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 +IL+++DDK + + + LK+E + G++ I +ILD+ + ++ G Sbjct: 13 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSGI 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS+ Sbjct: 73 EVIKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 131 Query: 121 GHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 132 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEIF 191 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A GG++ I+TVWG GY + Sbjct: 192 ERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 238 >gi|121593642|ref|YP_985538.1| two component heavy metal response transcriptional regulator [Acidovorax sp. JS42] gi|120605722|gb|ABM41462.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 219 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 120/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++RALR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L + G RI+LT KE+ ++ELL+ R L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + +IDV I +LR K+ + A I TV G GY Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGY 219 >gi|59713362|ref|YP_206137.1| DNA-binding response regulator in two-component regulatory system with CusS [Vibrio fischeri ES114] gi|197337719|ref|YP_002157770.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11] gi|59481610|gb|AAW87249.1| DNA-binding response regulator in two-component regulatory system with CusS [Vibrio fischeri ES114] gi|197314971|gb|ACH64420.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11] Length = 226 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ L + V ++ G DG+ ++D IILD+ L + G+ Sbjct: 1 MKLLIIEDETKTGEYLKKGLTESGYTVDLSQDGADGLYNATTNQYDLIILDVMLPKLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 ++L+ LR + TP+ +L+ I+D+V+G + GA+DY+ KPF EL AR+ +R Sbjct: 61 QILQTLRNCENDTPIIMLTAKDQIDDRVKGFELGANDYLIKPFAFAELKARVENALRAKS 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +V DL ++L +T I LT KE+ ++EL ++ L++ + Sbjct: 121 VISQPSSNELVLHDLKLDLLKRTATRNQDNITLTAKEFSLLELFMRKQGEVLSRTTIASL 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + + +IDV + +LR K+ + I TV G GY + E Sbjct: 181 IWDMNFDSDTNVIDVAVKRLRSKI-DKPYDTPLIHTVRGMGYKMDE 225 >gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V VT G + ++ + + D ++LDLGL ++ G EV Sbjct: 4 VLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGDIDLMVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 64 ARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGGAE 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ D++ + + LT KE+ ++ +L +T+E + ++D Sbjct: 124 VPVVHGV---RIDNDSRRAWLGERELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LR+KL + A +YI TV G G+ + Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFERD 222 >gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8] gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8] gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] Length = 231 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DDK L H ++ L EN + G++GI K E+ +ILD+ + + GF+ Sbjct: 4 KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R PV +L+ S KV GL+SGADDY++KPF+ +E +AR+ +++RR Sbjct: 64 VLEKIR-ETNRLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L+++L++++V + + L KE+ ++ + + LTK+ Sbjct: 123 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I I KLRKK+ + YI+TV G GY ++ Sbjct: 183 KVWQEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRFSKDV 231 >gi|238028534|ref|YP_002912765.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] gi|237877728|gb|ACR30061.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 252 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 4/237 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL +PG Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVCSGVDADTALSMQTFDLLILDLGLPKMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK-DETCEYLETA 236 +E I+V++ +LRKK+ + I TV G GY L + A + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSGA---RIATVRGLGYCLEKAAPAADPASTGAPA 234 >gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A + L+++ F V + GE+ + L + D I+LD + ++ G E+ Sbjct: 8 VLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEI 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R S P+ +LS S DKVRGL++GADDY+ KP++ EL+AR+R R Sbjct: 68 CRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V H + L E++++ + ++E L+ ++ Sbjct: 128 PATVGMRLEFDDIILDAETHKVSRSEHPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ G + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQHGGD-DPVRTVRGAGYAL 228 >gi|313899159|ref|ZP_07832682.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956052|gb|EFR37697.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 233 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ ++A +IE+ LKS+ + G E + D I+D+ + + G + Sbjct: 5 ILIAEDEASIADAIEIYLKSQGYQTLKAANGAIAWEQLQNNTVDLAIIDVMMPVMDGIAL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R P+ ILS S DK+ GL GADDY++KPF EL+AR+ A +RR + Sbjct: 65 TMKIR-ELYEFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHLRY 123 Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q L G + ++ +K V V G LT E+++++L + + Sbjct: 124 QQLLEQKQEVEDRLLLGGIELHRKSKEVFVDGESRRLTPIEFRILQLFMEHPGQVFSSDD 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H+++ + + V I LR+K+ YI+ VWG GY + + Sbjct: 184 IYEHVWN-ETAVNTETVMVHIRNLREKIEINPRAPRYIKVVWGVGYKIEKQ 233 >gi|260467116|ref|ZP_05813295.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259029128|gb|EEW30425.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 239 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 112/223 (50%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD + + ++ L F V V ++ +FD ++LD+ + G + Sbjct: 19 HLLVVDDDTRIRNLLKQYLTENGFRVTVAGNADEARRKLAGLDFDLLVLDVMMPGESGVD 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 + ++LR K P+ +L+ +S + ++ GL++GADDY+ KPF+ EL+ RI I+R Sbjct: 79 LTKSLRAEKNV-PILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRRGGP 137 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V G + + + ++ G + LT +E +++ + + R T+ + + Sbjct: 138 ATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHELV--- 194 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I +LR+K+ +++TV G GY L Sbjct: 195 -GDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRL 236 >gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A + L +E + V GE+ ++L D I+LD + + G EV Sbjct: 9 VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWMMPKVSGLEV 68 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R R + P+ +LS S D+VRGL++GADDY+ KP++ EL+AR+RA R Sbjct: 69 CRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRAR 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GD+ ++ + V + L E++++ R ++E L+ ++ Sbjct: 129 PASVGVVLEHGDIRLDGETHRVYRADKVLKLGPIEFRLLATFMERPGRVFSREQLLDRIW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +LR+ L GG + + TV G GY L Sbjct: 189 GRDINVETRTVDVHVGRLRRAL-CVFGGDDPLRTVRGAGYAL 229 >gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 6 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR + Sbjct: 66 SVLQVLR-QFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + +++ Sbjct: 125 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV + +LR K+ + I T+ G GY + Sbjct: 185 INFDTDTNFIDVAVRRLRSKI-DEGYEPKLIHTIRGLGYKI 224 >gi|319898567|ref|YP_004158660.1| two-component response regulator [Bartonella clarridgeiae 73] gi|319402531|emb|CBI76074.1| two-component response regulator [Bartonella clarridgeiae 73] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G L + ++D +++D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYTLAETIDYDVMVVDRMLPHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TPV ILS +S ++D++ GL++G DDY++KP+ EL+AR+ R++ Sbjct: 61 SIVAGLRAKGNETPVLILSALSQVDDRITGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGEKNIVLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPDK 226 >gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 225 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L+ E++ VY + GE ++L F+ IILDL + + G + Sbjct: 3 KILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNNFNLIILDLMIPKLSGEK 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ SS E+K+ G G DDYI+KPF+ EL ARI+A++RRS Sbjct: 62 VCQKIR-QSSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLRRSND 120 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G++ + + V+ LT E++++ L L++E N + Sbjct: 121 SNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQLANKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID I +RKKL YI TV+G GY Sbjct: 181 MGLEFSGFDRTIDTHIKNIRKKLKL--KKDEYIVTVYGAGYKF 221 >gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338] gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338] Length = 232 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ E + V + G +G+ L + F +ILD+ + DI GF Sbjct: 4 VLIIDDDKELCALMKKCIEQEEMSALVANGGTEGLRLIDENKNLFSLVILDVMMPDIDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + PV +L+ S +DKV GL+ GADDY++KPF+ +EL+AR+ +++RR Sbjct: 64 QVLEKIR-ETSNIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYT 122 Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ +TV V + LT KE+ ++ L+ K TK+ Sbjct: 123 TLNPTFAEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I FI KLRKK+ YI T+ G GY + A Sbjct: 183 TQVWKDDYAFDDNNIMSFISKLRKKIEADPEHPFYILTIRGVGYRFNKEA 232 >gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus thiooxidans] Length = 224 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ A ++ + V V D G DG L + E++ I+LDL L G+ Sbjct: 1 MKILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R PV +L+ + ++ +V GL+ GADDY+ KPF EL+ARI +I+RRS Sbjct: 61 WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++L + I+L +E++++ L LT+ ++D Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + ++DV I +LR+K+ + I T+ G GYVL Sbjct: 181 MHFESDSNVVDVAIRRLRRKV-DDPFPDKLIHTLRGVGYVLE 221 >gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638] gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LN++ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLR-ETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +S+I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15] Length = 219 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + ++ G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP 102972] gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP 102972] Length = 240 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + F V E L F ++LDL L G Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDPLLTRETFHLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A + P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 ICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ G+ +NL + + + LT E+ +++ L L+++ Sbjct: 126 EAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N + IDV I +LR+ L YI+TVWG GYV + K Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237 >gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9] gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9] Length = 219 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +E L+ FNV G +DA++LDLGL + G Sbjct: 1 MRVLLVEDDPLLGDGLEAGLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLGLPKVSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R + TPV IL+ S+ED++RGL +GADDY+ KPF E+VAR+RA++RRS Sbjct: 61 DVLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLRALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G L ++ +A+TV G + LT KE+Q++EL K+ L + + LY Sbjct: 121 GRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLPRALLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ++V + LRKKL + I TV G GY L E Sbjct: 181 WAQELDSNALEVHVHHLRKKLGS-----QLIRTVRGVGYQLGE 218 >gi|150019435|ref|YP_001311689.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905900|gb|ABR36733.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 242 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 25/242 (10%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ L ENF V GE +++ + +E ++LD+ L DI GFE Sbjct: 5 KILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ + + +L+ + DK+ G++ GADDYI+KPF E+ ARI AI RR Sbjct: 65 LC---KIMSQKSYIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSK 121 Query: 122 HAQSLIV---------------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 + + + ++N D +TV G I L KE+ ++ Sbjct: 122 NIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSY 181 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L K ++ LN ++ + + +DV I +LR L + +ETV+G GYV Sbjct: 182 LYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDDKENS-IVETVFGVGYV 240 Query: 221 LR 222 +R Sbjct: 241 IR 242 >gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74] gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74] Length = 245 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + +I L++E F V G +E + ++ D ++LD+ L G E Sbjct: 20 RVLVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A PV +L+ D + GL GADDY++KPF+ E+ AR+ ++RR Sbjct: 80 VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 138 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L V+ + V V+G +HLT E+ ++ L+ L++E Sbjct: 139 AALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPA 244 >gi|77460076|ref|YP_349583.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384079|gb|ABA75592.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L FN + G G +L ++ +ILD+ L G+ Sbjct: 1 MKLLIVEDQPKTGQYLRQGLTEAGFNTELVADGTTGQQLALSGDYALLILDVMLPGRNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 ++L+A+R A + TP+ L+ ++ED+V GL+ GADDY+ KPF EL+AR+R++ R S Sbjct: 61 QILQAVRSAGLETPILFLTAKDTVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DLS++L + VE G RI LT KE+ ++E+L R+ L K + + ++ Sbjct: 121 STPQETSLRLADLSLDLIRRRVERSGQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V I +LR K+ + I TV G GYVL E A Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPN-KLIHTVRGMGYVLEERA 225 >gi|120553936|ref|YP_958287.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120323785|gb|ABM18100.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 233 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ + + + + + D G+ G+ + D +ILDL L + G V Sbjct: 5 VLIIEDNPGIGELVRMQVSDLGMTAVLRDRGDSGLARFRDGGIDLVILDLMLPGLDGLAV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R + PV +L+ S+ D+V GL+ GADDY++KPF+ EL ARI+A+ RR Sbjct: 65 CREIRASAGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARIKALFRRVDAL 124 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I L ++ + V ++ + LT +E+ ++ + + ++ Sbjct: 125 SRKSSAEDDVAEIEADGLRIDPVRRRVFLECRELDLTAREFDLLWHFASHRGRVFSRAQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ + ++ I +LR K+ Y++TVWG GY Sbjct: 185 LDAVWGYNHDGYEHTVNTHINRLRNKIEPDPAEPRYVQTVWGVGYRF 231 >gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT 98-5491] gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT 98-5491] gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT 98-5491] Length = 222 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 IL++EDD + + LK TD + +E+ K FD +LD+ L ++ G E Sbjct: 4 ILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIMLPEMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ + S I K+ G + GADDY++K + ELVARI A+++R Sbjct: 64 LCKKIR-QISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYSA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL V+ + V ++G+ I LT E++++ LL K ++E + Sbjct: 123 NQVIHY--GDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ID I LR KL + A YI++VWG GY + Sbjct: 181 APDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKFCD 222 >gi|254439299|ref|ZP_05052793.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198254745|gb|EDY79059.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 247 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ E +L +E+F+V+ G + + K +D +ILD+GL D G Sbjct: 25 KILLVDDDEDLRDALGEQLLMTEDFDVFEAGNGAEAMTKAKESLYDLVILDVGLPDTDGR 84 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +L+G D + GL +GA+DY++KPF L+ARIRA +R Sbjct: 85 ELCRLMRKQGVKCPIVMLTGHDGDSDTILGLDAGANDYVTKPFKFPVLLARIRAQLRTHE 144 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 145 QSEDAVFTLGPYTFQPAQKMLLTEDDKKIRLTEKETNILKYLYRSTDGVVARDVLLHEVW 204 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 205 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 246 >gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 249 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD LA + L + F V GEDG+ + F A+ILD+ L I G EV Sbjct: 15 VLLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINLPGIDGLEV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R ++ + P+ +L+ D++ GL+ GADDY+ KPF EL+AR+RAI+RR + Sbjct: 75 CRRMKARSET-PIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q++ G L ++ + +V G LT ++Q++ +L+ L++E+ ++ L Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I ++R ++ + I TV G GYV Sbjct: 194 GETLEAFDRSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235 >gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] Length = 234 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + + L+ +F+V + + G E+ D ++LD L + G E Sbjct: 5 RILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R L+ + + P+ +L+ S ++K++GL GADDYI+KPF+ EL++RI+A+ R Sbjct: 65 LARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRA 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ I L ++ + + + + EY+++E + ++ L+ + Sbjct: 125 SSVAAEKAIEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + IDV I +LRK L+ G +I+TV G GY Sbjct: 185 WGANVYVEDRTIDVHIRRLRKALAP-FGYDRFIQTVRGTGYRF 226 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + D +ILDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ IL+ M +I+ KV L++GADDY++KPF+ EELVAR++ +R Sbjct: 64 VARRLR-KTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLR--HQ 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 121 QHGEVITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GVIRTVRGIGYALKTP 222 >gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 231 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 137/222 (61%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V +G + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VFI +LRKKL N IET+ G+GY LR Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLR 221 >gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044] gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae] gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I L L+ + F V G + +E + D ++LD+ L D+ GFEV Sbjct: 10 ILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDGFEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 L+ +R +TPV +L+ +D+VRGL+ GADDYI+KPF+ ELV+R++A++RR Sbjct: 70 LKLIR-ESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVEAT 128 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + V L ++ + V V+G+ + L EY+++ L +T E L Sbjct: 129 SLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLLTK 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETCEY 232 ++ E + +++ LR+K+ YI T G GY + E+ + Sbjct: 189 VWGYEYRDEEHYVRLYVNYLRQKIEEDPSNPKYILTERGVGYRFVDFRKAAESSQG 244 >gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 231 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDD ++A L+ F V + G + + K EFD +ILD+ L I GF Sbjct: 3 KILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLNCLKENEFDLLILDIMLPKIDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR P+ I+S DK++G GADDYI+KPF+ ELVAR+++ ++ Sbjct: 63 ILR-SIQDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKNYER 121 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + D++ V V + L KE+ ++ +S N ++E Sbjct: 122 IKNKFDSNKKSDTILIRGLEIRKDSREVFVNCKEVTLAQKEFDLLLYMSENPNRVFSREE 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K + YIETVWG GY ++ Sbjct: 182 LFEKVWGLDAIGDTSTVTVHIGRIREKTEASPSNPQYIETVWGAGYRIK 230 >gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 224 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ +LRKK+ + + I+T G GY L + Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYLGD 223 >gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855] Length = 226 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 4/225 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62 L++EDD + +E + E++ V + GE ++ K + D ++LD+ L + GFEV Sbjct: 2 LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L + S PV +++ E K++G GADDYI+KPFN EEL AR++AI++R+ Sbjct: 62 LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPP 121 Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GD+ VN G ++ T E+ ++ L K T+T++ L ++ Sbjct: 122 AEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ID + +RKK+ YIETV+G GY E Sbjct: 182 GIDENIITRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDEE 226 >gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ I + L +++V+ D GE G+ L D ++LD L + G + Sbjct: 3 KILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSGID 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 R ++ P+ +L+ EDK+RGL+ GADD+++KPF+ EL+ARI+A+ R Sbjct: 63 FARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLRRA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L+++ A V + + + E++++ ++ L+H+ Sbjct: 123 APLSGDERIEVKGLTLDPVAHRVWIGEDTLEIGPTEFRLLRFFMTHPERVFSRGQLLDHV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK ++ G I+TV G GY Sbjct: 183 WGTNVYVEERTVDVHIRRLRKTIAGR-GHDRLIQTVRGTGYRF 224 >gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 240 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 110/234 (47%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL++D++ L I L+L+ E + + G+ +L ++D I+LD+ L D GF Sbjct: 5 RILLVDDEEGLLEMIRLLLEREGYSRIDTATKGQQARDLIDQNDYDLIVLDVMLPDGSGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R P+ L+ ++ D + G G DDY++KPF+ ELVARI+A++RR R Sbjct: 65 DLCQEIR-KTSKVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRRHR 123 Query: 121 GHAQSLIVTGDLSVNLDAKTV-------EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L ++ V +V+G + + +E+Q++ + Sbjct: 124 YFQEQLAQQQPEVLDYGDFQVIRSAGELQVKGKPVDCSAREFQLLLFFCDHPHHIFNVSE 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E K + + I +LRKK+ ++ V G GY K+ Sbjct: 184 LYEKVWKQEAIGEEKTVVMHISRLRKKIEQNPKQPRFLINVRGLGYKFVPPRKE 237 >gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 221 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 8/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED + L I LK+E FNV + +D +E + D +ILD+ L D+ G+EV Sbjct: 4 ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALEKL--NDTDLVILDIMLPDMEGYEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +K P IL+ S DK++G + GA+DYI+KPF+ EL+AR++ ++RR+R Sbjct: 62 LKEA--SKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+ + G + + V V G ++LT KE++++ L+ K+ +++ L ++ Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV I +LR+KL + K I+TVWG GY L E + Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSEEKE 221 >gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LN++ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225 >gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A LK + + G+ + + A+I+DL L GF+ Sbjct: 3 KILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLMLPGKNGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R +R + P+ ++S + DK+RGL GADDY++KPF+ EL+AR+++ +RR Sbjct: 63 IIRDVR-STQEVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRRYER 121 Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + LS + A+ V V G + LT KEY ++ L+ N TKE + Sbjct: 122 LKGNKTQEEILSFRGLEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNIVFTKEHLFD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ D ++ + V I ++RKK+ +YIET+WG GY Sbjct: 182 TIWGVDDYGDLATVPVHIQRIRKKIEKDPSNPDYIETLWGTGYRF 226 >gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri MJ11] gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri MJ11] Length = 225 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ + L+ E F T+ G++G+ + ++ IILD L ++ G Sbjct: 1 MKILVIEDDQTTRDFVTKALEQEGFITDSTEDGKEGLMMAISCDYQLIILDRMLPNLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV ILS + S++ +V GL +G+DDY++KPF EL+ARI I+RR+R Sbjct: 61 KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNR 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L++NL ++ V + + + L KE+ ++ L+ + +++ Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I KLRKKL + +G + IETV G GYVLR Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKL-DNSGAVDLIETVRGAGYVLR 223 >gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39] gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39] Length = 224 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ +LRKK+ + + I+T G GY L + Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYLGD 223 >gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 257 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L I+DD + ++ L+ + + + + D +ILDL L D G E Sbjct: 34 LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLEF 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ PV +L+ + DKV GL+ GADDY+ KPF EL+ARI+A +R + G Sbjct: 94 CCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPGA 153 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L ++L +TV+V G ++LT KE+Q++ L+ +N +T+E L+ Sbjct: 154 GTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLAENRNHLVTREEIRKRLWR 213 Query: 181 GRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++IDV I LR+K+ +I TV GRGY E Sbjct: 214 DSKIYSWSRVIDVHIQHLRQKVEETPSQPRHIVTVPGRGYRFME 257 >gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++ED++ + + L E F V + GE+G+E D ++LDL L + G + Sbjct: 5 HILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLMLPGMDGLQ 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V RAL+ V +++ D V GL+ GADDY++KPF+ + L+ARIR+++RR Sbjct: 65 VCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLRRR 124 Query: 120 RG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ DL ++ V V+G + LT E++++ L+ R T+ Sbjct: 125 ESADETGADQVVVHIDDLVIHPGRNQVTVKGVPVDLTFTEFRVLHFLASRPGWVFTRYQI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +N + + +DV I LRKKL YIETV G GY + Sbjct: 185 VNAVRGDDYSVTDRAVDVQIVGLRKKLGAYG---KYIETVRGVGYRFK 229 >gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + +I L++E F V G ++ + ++ D ++LD+ L G E Sbjct: 20 RVLVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A+ PV +L+ D + GL GADDY++KPF+ EL AR+ ++RR Sbjct: 80 VCRRV-QAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L ++ + V V+ +HLT E+ ++ L+ L++E Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPAP 245 >gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 227 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-AIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +S++ A+ V + I T K ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTK--DLLTFFVTNPNQVLNKEQLF 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 180 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 225 >gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + I +LK++ F+V+ G D ++ + D +LD+ + + G+E Sbjct: 3 KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R P+ +L+ S + KV+G + GADDY++KPF +EL+ RI+A++RR + Sbjct: 63 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A I G+L+++ TV + KE++++ +L TL++ + ++ Sbjct: 123 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +DV I +LR++ + I T+ G GY L Sbjct: 183 DFEGNERTLDVHINRLRERFPSHVYKFK-ITTIRGLGYRLE 222 >gi|326202666|ref|ZP_08192534.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987250|gb|EGD48078.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 113/218 (51%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ L + + LK ENF + G + + D II D+ + I G+E+ Sbjct: 5 ILVVEDDETLNKLMCIKLKQENFKTFSAFDGAQALGILDQEYIDLIISDIMMPKIDGYEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A + P+ +++ +ED +G ++G DDY+ KP N +E++ R+ A++RRS+ Sbjct: 65 TKELRDASYAQPILMVTAKDQLEDMEQGFRAGTDDYMIKPINLKEMILRVNALLRRSKIA 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ G ++ T+ + G + KE+ ++ LL N T+ L+ ++ Sbjct: 125 NEKRLIVGKTVLDYSQMTIYIGGQEFEIPPKEFYLLFLLLSNPNKIFTRLEILDEIWGMD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + + +D I KLR+K N + I T+ G GY Sbjct: 185 SEVDERTVDSHIKKLRRKFENCMDFE--IITIRGLGYK 220 >gi|253580967|ref|ZP_04858229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847809|gb|EES75777.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 247 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + +I + L+ E + V G + I + + D +I+D+ + + G Sbjct: 20 ILVCDDDKDIVEAIGIYLEQEGYTVIKAYDGVEAINVLRSQPVDLLIIDIMMPKLDGIRT 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ ILS S DK+ GL GADDY++KPFN ELVAR+++ +RR Sbjct: 80 TLKIREENPL-PIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTRL 138 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + TG LS+N D K V V G + LT EY ++ LL + + Sbjct: 139 GAAIPVENAHIYETGGLSINDDLKEVRVDGDVVKLTPIEYNILFLLMKNQGRVFSINQIY 198 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + V I +R+K+ Y++ VWG GY + + Sbjct: 199 ENIWNEEAVAADNTVAVHIRHIREKIEINPREPRYLKVVWGLGYKIEK 246 >gi|229029585|ref|ZP_04185664.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271] gi|228731707|gb|EEL82610.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 113/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L+ + V + GE G++ ++D +ILD+ L I G+E Sbjct: 3 RILIIEDEAVIAELEKDYLEVAGYTVDIDYSGEKGLQSVLLKDYDLLILDIMLPGIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ K P+ ++S DK++GL GADDYI KPF+ E+VAR+ A + R Sbjct: 63 ICKQVRLKKDI-PILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 D + A+ V V G + LTGKE+ ++ ++ N +K+ Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +R K+ K+YIET+WG GY Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227 >gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 233 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ +D+ + + K E+ + GE+ I + + Y ++LD+ + G+E Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV +++ +K+ GL GADDYI KPF+ E++ARIRAI+RR Sbjct: 63 VCRKIRAKSDV-PVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L +NL+ T+ + G +I LT KE + + L+ N T++ L+ Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ + + +D I +LR KL I+T+WG GY + Sbjct: 182 SLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVDE 230 >gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A +++ L + + GE + L + F I+LD+ L DI GFE Sbjct: 3 KILVIEDDVNIAKFVKINLDKY-YETEIVHEGERALYLLERERFSVIVLDIMLPDISGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R K++TPV IL+ S DK+ GL+ GADDYI+KPFN ELVAR+RA++RR Sbjct: 62 LLKKIRAMKVNTPVVILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L+ ++ ++L V+G + LT +E+Q++++L + + +E + Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV I +LR+K+ YI T WG GY Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGYYF 226 >gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 232 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD + +++ ++L+++ + + GE+G++ FD +I+D+ + +I G + Sbjct: 3 KLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ L+ S DK+ L +G DDY+ KPF+ EL+ARI+A++RR R Sbjct: 62 VCRKIR-EKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + S I L+++ V G ++ LT KEYQ++ LL T + + Sbjct: 121 YDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180 Query: 173 MFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I V I LR KL G + I+TVWG+GY E Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232 >gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 3 str. Tulya] gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L+ E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK + N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADSIRTVRGAGYSF 227 >gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I L E F + G++ + K D IILD+ + + G + Sbjct: 4 KILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPGMDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R++R + P+ LS DK+ GL+ GADDY++KPF+ +EL +RIRA R+ Sbjct: 64 VCRSIR-KSYNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFRKIDR 122 Query: 122 HAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + N + +++L+ KE+Q++ +L N LT+E Sbjct: 123 LFKEWNELSPNRERNDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLVHNPNNVLTREQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++ E+ + V I +RKKL ++I+T+WG GY +E Sbjct: 183 IYEHVWGDEY-GELNTVTVHIKNIRKKLGP---EYDFIKTIWGIGYKYKE 228 >gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 239 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +LL++D++++ + L F V + + D +ILD+ + G Sbjct: 6 HLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV +L+ S D++ GL+ GADDY+ KPF+ ELVARI+ I RR Sbjct: 66 LCRHIR-ETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q G L + V+ +G + L+ EY ++ + R N L+++ Sbjct: 125 GGQRVTAPDGATYAFAGWLLKTQERTLVDGEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + ID I +LRKK+ I+TVWG GY L + + Sbjct: 185 LLDITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTLSADVR 237 >gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK L +L + + GE +E+ + D +I D+ + ++ GFE+ Sbjct: 4 VLVVEDDKDLRGLFCTILTKNGYKAISAEDGEKALEILEKEYVDLVISDIMMPNMDGFEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +ALR A + P+ +++ + DK +G G DDY+ KP + E+V R+ A++RR++ Sbjct: 64 TKALREANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRRAQII 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G+ + D+ TV G I L KE+ ++ L N T++ ++ ++ Sbjct: 124 NERKQTVGNSVLEYDSLTVYQNGEAIVLPQKEFYLLYKLVSFPNHIFTRQQLMDEIWGMD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + E + +DV I +LR + + I TV G GY Sbjct: 184 SDTEARTVDVHINRLRDRFKENQDFE--IMTVRGLGYK 219 >gi|240850128|ref|YP_002971521.1| two-component response regulator [Bartonella grahamii as4aup] gi|240267251|gb|ACS50839.1| two-component response regulator [Bartonella grahamii as4aup] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD H +E +V V G+ G L +D +++D L G Sbjct: 1 MKILVIEDDHETGHYLEKAFLEVGHSVDVAYDGDTGYALATTENYDVMVVDRMLLHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ LR TPV ILS + + D+V GL++G DDY++KP+ EL+AR+ R++ Sbjct: 61 SIIAELRAKGNETPVLILSALGQVNDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ G+L ++ A TV+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV I +LR K+ + TV G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAP 224 >gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 227 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +LA + LK E + V + G +E FD ++LDLGL + G Sbjct: 8 RILVVEDDLSLADGLVTALKREGYTVDLLHDGIHALEALANEVFDLVVLDLGLPRLDGLA 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR + + PV IL+ ++ED+V GL GADDY+ KPF+ EL AR RA++RRS G Sbjct: 68 VLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLRRSYG 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A S I L + + V Q ++LT +EY ++ L + T+++ +Y Sbjct: 128 RAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHVFTRDVLQQLMYGW 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D+ E ++V I LRKKL I T+ G GYV Sbjct: 188 GDDVESNALEVHIHHLRKKL-----FPELIRTIRGIGYV 221 >gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD A + L+ + G DG+ L +DA+I+D L + G Sbjct: 1 MRILLIEDDSEAAAYMAKGLREAGHVIDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ALR A +TPV +LS + ++D+VRGL++G DDY+ KP+ EL+ARI A R S Sbjct: 61 SIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L A+ V G I L +E++++E L +T+ M L +++ Sbjct: 121 STQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR+K+ I TV G GY LR Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDFELP-LIHTVRGAGYTLR 222 >gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [gamma proteobacterium IMCC3088] gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [gamma proteobacterium IMCC3088] Length = 230 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ++A + L + N G +G+ +DA+I+D L + G Sbjct: 5 MRVLLIEDDSSVADFVASELALKGHNCECASTGTEGLLAANSARWDALIVDRMLPKLDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+++LR TPV ILS + ++D+V+GLQ GADDY+ KPF+ EEL+AR+ AI RR Sbjct: 65 SVIKSLRDKGDLTPVLILSALGEVDDRVKGLQIGADDYLVKPFSSEELMARLEAIHRRLA 124 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + DL ++L + V G I L +EY+++E L +T+ M L + Sbjct: 125 PLGADFRTTLEAEDLRLDLITQEVRRAGRVIALQPREYRLLEYLMRNAGKIVTRSMLLEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +P+ +IDV I +LR+K+ + TV G GY + Sbjct: 185 VWGYHFDPQTNVIDVHISRLRQKIDRDFDYP-LVHTVRGAGYRFGDE 230 >gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family [Marinomonas mediterranea MMB-1] Length = 231 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D+ + I + L+ + + + G E+ + D I++D + G E Sbjct: 5 KVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMMPGGSGIE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R L+ + PV +L+ S ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 65 LTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L ++ ++ V + + + EY++++ L + ++ L+ + Sbjct: 125 TPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAYSRAQLLDQV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + +DV I +LRK + N + I+TV G GY Sbjct: 185 WGGNVYVEERTVDVHIRRLRKAIGN--THDSLIQTVRGTGYRF 225 >gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 8 RILIVEDDKDLNRQLAEAMAAAGYVVDRAYDGEEGHHLGDTEPYDAVVLDIGLPRMDGIS 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ G Sbjct: 68 VVERWRRSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAG 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 HA S +V G L ++ + G + LT EY+++ L + +++ + HLYD Sbjct: 128 HASSELVCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYDQ 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ IETV G GY +R ET Sbjct: 188 DFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRIRSEGGGET 230 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + + D ++LDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ IL+ M +++ KV L++GADDY++KPF+ EELVAR++ +R Sbjct: 64 VARRLR-KTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLR--HQ 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 121 QHGEVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GIIRTVRGIGYALKTP 222 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + + D IILD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGKPIDLSPTEYKLLCYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKN---------YIETVWGRGYVLREN 224 + I++ +I LRKK+ + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDITVEDEDGTTHKVQPLIETKRGIGYMIRAP 241 >gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096] gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096] Length = 228 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETHVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|126700190|ref|YP_001089087.1| two-component response regulator [Clostridium difficile 630] gi|115251627|emb|CAJ69460.1| Two-component response regulator [Clostridium difficile] Length = 238 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 15/234 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A +IE+ L ++ +NV+ G +G+++ + E I+D+ + + G + Sbjct: 6 ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGITL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR + Sbjct: 66 TMKLR-ENYNFPVIMLSAKSEEVDKMMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 123 AQS-------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + G L +N + K V + G I T E++++ LL Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRVF 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 SADEIYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237 >gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 209 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 104/212 (49%), Gaps = 5/212 (2%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 + + + L + + + G++ ++ + +D ++LD+ + ++ G V + +R Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGHSVCKEIR-KTS 59 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGHAQSLIVTG 130 P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Q I G Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFG 119 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 + +N ++ +E G I LT KE+ ++ L ++E L ++ + + Sbjct: 120 PILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYDYAGSTRTV 179 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + +R KL + NYI+TVWG GY Sbjct: 180 DTHVKTMRLKLGESG---NYIQTVWGVGYKFE 208 >gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] Length = 282 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 41 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V++ +LRKK+ + I TV G GY L + Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 260 >gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 240 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+ED+ LA I L+ E + V + GE+ +E + F IILD+ L + GF Sbjct: 7 HILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVMLPGMDGFA 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R PV IL+ S +V GLQSGADDY++KPF+ E + R+ ++RRS Sbjct: 67 VCERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRRSSW 126 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GD V L + I LT E +M+ L R+ +++ L + Sbjct: 127 YRPEPVEEAYRFGDNEVFLLSYHARTAQGEIDLTELEVKMLSLFFQREGEAISRREILEN 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E + +D FI +LRK Y TV G GY Sbjct: 187 VWGYTSDTETRTLDNFIVRLRKYFEPNPARPIYFHTVRGLGYRF 230 >gi|294814187|ref|ZP_06772830.1| Response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442585|ref|ZP_08217319.1| winged helix family two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326786|gb|EFG08429.1| Response regulator [Streptomyces clavuligerus ATCC 27064] Length = 239 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD A I + L+ E V + G I+ + D I+LD+ + + G + Sbjct: 4 RILVAEDDVKQARLIRIYLEREGNEVQIVSDGRSAIDRARATRPDLIVLDVMMPHVDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ ++ ED + GL GADDY++KP++ EL AR+RA++RR+R Sbjct: 64 VCRVLRTESQI-PILLLTARTTEEDMLLGLDLGADDYMTKPYSPRELAARVRALLRRARA 122 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A S G+L ++ V G + LTGKE+ +++LL+ T+ ++ Sbjct: 123 AAVSAGAGVLAVGELEIDPARYEVRAGGEPVVLTGKEFAILQLLAEEPGRVFTRGQIIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +D + LR+KL +ETV+GRGY L + Sbjct: 183 VFGFDQNVLERTVDAHVMNLRRKLEADGRRPRVVETVYGRGYRLSGD 229 >gi|115523953|ref|YP_780864.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517900|gb|ABJ05884.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 225 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L ++D +++D L G Sbjct: 1 MRLLIIEDDRESADYLVKAFREVGHVADLAADGEEGLSLADSGDYDVLVIDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR TP ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 61 SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL ++ + V + L +E++++E L +T+ M L +++ Sbjct: 121 GPVEETSYKVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERP-LLHTIRGAGYMVRD 223 >gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittEE] gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3047] gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC 11116] gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae PittEE] gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae 10810] gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus influenzae R2846] gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Haemophilus influenzae F3047] gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC 11116] Length = 231 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+ I L L + ++V + I K I+LD L G + Sbjct: 4 KILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ + P+ +L+ S+ ED + L +GADDYI+KPF+ + L+ARI A+ RR Sbjct: 63 FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I +LS++ +A+ V Q I+L+ E++++ ++E LN ++ Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E + +D +I +LR+ L+ ++YI+TV G GY Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAP-FQCEHYIQTVRGSGYRF 223 >gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + +E + I++D L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTALDDVIDVQGLKLDPVSHRVTSGDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L A G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGGHDKLVQTVRGAGYRF 225 >gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LN++ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225 >gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + E++++ ++E LN++ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225 >gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czccba [Cupriavidus taiwanensis LMG 19424] gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G DG+ + + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV L+ + D+++GL+ GADDY+ KPF ELV RIR I+RR Sbjct: 61 EVLRELRRE-RDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++ + V G +I LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV I +LR K+ + + I T G GYVL + Sbjct: 180 VNFDSNTNVVDVSIRRLRAKV-DDPFPRKLIHTRRGMGYVLDD 221 >gi|295398157|ref|ZP_06808206.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973676|gb|EFG49454.1| response regulator [Aerococcus viridans ATCC 11563] Length = 227 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + +E++ V G++ ++ ++LD+ + G Sbjct: 1 MKILITDDDKEIVELLTIYATNEDYEVIQAFDGDEALKKIAENPDIAMMVLDIMMPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V++ LR + P+ +LS SS DK+ GL +GADDY++KPFN E++ARI++++RR+ Sbjct: 61 ITVIKELRKRDVDMPILLLSAKSSDMDKISGLTTGADDYVTKPFNPLEVMARIKSLLRRA 120 Query: 120 RG--HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I G L +N ++ V G +I LT E+ ++ LL+ N + + Sbjct: 121 STAGDDSATIEVGPLVINKNSHEVKTTDGQQIQLTALEFGILYLLASNPNNVFSADEIFE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG I TVWG GY + Sbjct: 181 RVWQQESVVSAKTVMVHVSHLRDKIGEATGGDKVISTVWGVGYKI 225 >gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM Thermotoga Maritima Length = 225 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 89/227 (39%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ LA I LK E F V V GE+G FD +ILD+ L G+E Sbjct: 4 RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L++ R + ++TPV L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 64 ILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKSE 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V GDL ++ K I LT KEYQ++E L KN +TKE HL+ Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWSF 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE ++ I LRK + K I TV G GYV A+DE Sbjct: 184 DDEVFSDVLRSHIKNLRK-KVDKGFKKKIIHTVRGIGYV----ARDE 225 >gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] Length = 243 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224 + I++ +I LRKK + G IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241 >gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1] gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 119/243 (48%), Gaps = 23/243 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPADAPPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV +R + PV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGYEVCGKIRKRTST-PVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119 Query: 118 RSRGHAQSLIVT---------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 R+ G + T G +S+ L + V V G + LT KE+ ++ LL+ Sbjct: 120 RTGGSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALLA 179 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R +E ++ ++ E + ++V + LR KL IETV G GY L Sbjct: 180 QRPGVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKL----RMPALIETVRGVGYRLV 235 Query: 223 ENA 225 A Sbjct: 236 TPA 238 >gi|116049749|ref|YP_791444.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296389810|ref|ZP_06879285.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313110495|ref|ZP_07796380.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|115584970|gb|ABJ10985.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|310882882|gb|EFQ41476.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 235 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD+ LA I L F V G+ ++ ++LDL L G + Sbjct: 8 KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ IL+ D + GL+SGADDY+ KP L+AR+RA++RR Sbjct: 68 VCREIR-RVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAP 126 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S G L+++ + E++G I LT E++++ LL+ + L+++ LN + Sbjct: 127 LPASPESLTFGKLNIDRRRREAELEGRGIELTTMEFELLWLLANQAGEILSRDEILNQIR 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +DV I KLR KL + I+TVWG+GY+ + Sbjct: 187 GIGFDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFNPLGWE 234 >gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326] gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I L+ + ++ G D + ++AI+LDLGL + G Sbjct: 1 MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSENWEAIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I+TPV ILS ++ +V GL +GADDY +KPF EL+ARIRA +RR+ Sbjct: 61 TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +I G+LS++ V QG I LT E++++ +++ + H+Y Sbjct: 121 GNASPVIQIGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VFI ++RKK++ I+TV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQLNAE 219 >gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLI+DD + + L +V G G+ + +DA++LD+ + + G E Sbjct: 4 RVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMPGMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ D+V GL+ GADDY++KPF+ EL+AR+RA++RR++ Sbjct: 64 VCKRIRAKTQV-PILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRAQP 122 Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + +S+++ + V+V G + LTG E++++ L R + ++ L Sbjct: 123 TAVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDALLGEAGR 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +DV I LR+KL + G I+TV G GYV + Sbjct: 183 SDTVVGERTVDVHISHLRQKLGDEGG--RLIKTVRGVGYVFAKEG 225 >gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] Length = 231 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL L++E+F VY E+ + E D +LD+ + I G E Sbjct: 4 KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + + P+ +L+ + DK++GL GADDYI+KPF E+VAR++A +RR + Sbjct: 64 LCKKIR-ERYNYPIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 122 Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + L +N + + LT E+ ++ +L +K ++ E Sbjct: 123 YNTGTVKAEEILEHKGLVLNKKTHECFLNERLLSLTPTEFSILVILCEQKGNVVSAEELF 182 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ I V I LR+K+ ++ YI+TVWG GY + + Sbjct: 183 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 231 >gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 227 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+++L I ++ +E + G DG+ L Y++D I+DLGL + G Sbjct: 1 MRLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPLMDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR + P+ IL+ + +DKV+GL++GADDY++KPF+ EEL ARI A++RR+ Sbjct: 61 TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G ++++ AK V G + LTG EY + L++ ++K HLY Sbjct: 121 GHASSQLNYGPITIDTSAKRVYRDGAEVELTGFEYNTLTYLAMHPGKNISKLELTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +I+VF+ +LRKKL N I T G GY ++ Sbjct: 181 QDYDRDSNVIEVFVGRLRKKLDPDGSL-NLISTQRGLGYRFNDS 223 >gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 225 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD I L+ F V + G G+ + ++ IILD L + G Sbjct: 1 MKVLVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPMLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL ALR + TP+ ILS M S+ED+V GL +G+DDY++KPF ELVAR + +V+R++ Sbjct: 61 KVLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQ 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + DL +++ + V ++L KE+ +++ L + +++ + Sbjct: 121 ASATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I LRKKL G + I TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223 >gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 235 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL ED++ L +I+L L+ E + V + G+ ++ K F+ +ILD+ + +I GF Sbjct: 6 RILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGFV 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R+ P+ L+ ++ EDKV GL+ GADDY++KPFN EEL+ R+ +V+RS Sbjct: 66 VAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKRSLK 125 Query: 122 HAQSLIVTGDLSVNLDAK-----TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + V G LT KE +++LL R+N +++E L Sbjct: 126 GDALKEFNSYKIGDKTIHFNSFELVNADGSITPLTKKETMLLKLLIERRNDAVSREQILE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ P + ID FI RK Y ++ G GY +N Sbjct: 186 TVWNYDVYPSTRTIDNFILTFRKYFEPDPKSPVYFHSIRGVGYKFTDN 233 >gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR TP+ +++ S+ D++ GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLR-ESKKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I L+ V V + G + + D I+LD+G+ ++ G E Sbjct: 5 ILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMDGLET 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRRS 119 R +R P+ LS D+V GL+ G DDY++KPF+ ELVAR+ +R Sbjct: 65 CRRIR-KTSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKRLRPK 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+LS++L + G + LT E+ ++E + R N T+E L Y Sbjct: 124 EAEPSNGLTHGELSLDLASHRATFHGSALSLTALEFSILECFTARPNQVFTREQILASAY 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ID I +R KL+ A GG IETV G G+ L Sbjct: 184 NNAINVSDRTIDSHIRNIRAKLALAGGG-GCIETVHGIGFRLGP 226 >gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K LA+ I+ L + V V GE+ + E+D IILDL L I G Sbjct: 1 MKLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + ILS + IED+V GL GA+DY+ KPF+ EL ARIR+++RR Sbjct: 61 EVLKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G + ++ V + G + +T KEY ++ L KNT ++ E + H++D Sbjct: 121 IQENSMLSCGSIFIDTSKNLVYINGDLLSVTKKEYAILNYLLYNKNTVVSSEKLIEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + LRKK++ K I+TV G GY++ E D Sbjct: 181 SEVDLFSNTLKYHMHSLRKKIAEY-SEKEIIKTVRGCGYIVEEQDND 226 >gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris NZ9000] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +L++ED+ +++ ++ L E++ V G +E+ + + D ++LD + + G Sbjct: 4 HVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR ++ + +TP+ L+ I DKV GL +GADDYI+KPF EEL+AR+R I R+ Sbjct: 64 LTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L V+L A T EV G ++LT +E+ ++ + +++ L+ ++ Sbjct: 124 STSRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D ++ LR + + K+ IETV G GY L Sbjct: 184 GMDFDGQENTVDAYVRYLRATI-DLPNHKSLIETVRGVGYRL 224 >gi|300812325|ref|ZP_07092761.1| response regulator receiver domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496745|gb|EFK31831.1| response regulator receiver domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +ILD+ + ++ G Sbjct: 3 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV--- 116 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++ Sbjct: 63 IDVVKEVRKDSDI-PIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 121 Query: 117 -RRSRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + ++ G L +N D+ V V+G I LT E+ ++ LL+ N + + Sbjct: 122 RKQVKEEQPDVLEVGPLIINKDSHEVKTVEGKEIRLTALEFGILYLLASHPNRVFSADEI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ K + V + LR K+ A G+ I+TVWG GY + Sbjct: 182 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 229 >gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44] gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA ++ L E F V G DG+ L +D IILD L I G Sbjct: 1 MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR TPV +L+ + +ED+V+GLQ+GADDY+ KPF ELVARI A++RR Sbjct: 61 AVLAALR-QSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 119 Query: 121 GHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL ++L G R+ LT KE+ ++ LL R+ L++ + Sbjct: 120 QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELAS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + E +++V + +LR KL +A + TV G GYVL Sbjct: 180 QVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVLE 224 >gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16] gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I L+ + ++ G D + +++AI+LDLGL + G Sbjct: 1 MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSEDWEAIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R I+TP+ ILS ++ +V GL +GADDY +KPF EL+ARIRA +RR+ Sbjct: 61 TVLKSIRDENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +I G+LS++ V QG I LT E++++ +++ + H+Y Sbjct: 121 GNASPVIQNGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VFI ++RKK++ I+TV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQLNAE 219 >gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H] gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 241 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 117/233 (50%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD+ + + L+ +F V + + + ++LDL L G E Sbjct: 8 HLLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ MS D++ GL+SGADDY++KPFN EL+ARIRA++RR+ Sbjct: 68 VARWLRSQDNV-PIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVD 126 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G + + + G + LTG EY ++ L R N LT++M Sbjct: 127 VEDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDM 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L L + P + IDV I +LR+KL + I+TV G GYVL + Sbjct: 187 LLELLRGRQAGPFDRAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVLAAEVE 239 >gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718] gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 11/236 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+ I L++ + T+ E + D ++LD L G E+ Sbjct: 5 VLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKSGIEL 64 Query: 63 LRALRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R+LR + P+ +L+ DKV GL++GADDY++KPF+ EL+ARI+A+ R Sbjct: 65 ARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRSL 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVE-------VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ G + +N V + L+ EY+++ L T+ Sbjct: 125 PEASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSPTEYRLLYFLMAHAERVHTRA 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ ++ E + +DV I +LRK L + AG + ++TV G GY + E Sbjct: 185 QLLDRVWGDHVFVEDRTVDVHIRRLRKAL-DVAGKADLVQTVRGAGYRFSTRGESE 239 >gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I L+ + ++ G D + +DAI+LDLGL + G Sbjct: 1 MKILVVEDEVTLGEQIIAGLEQSGWVAELSSDGIDALYRATSEPWDAIVLDLGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R ++ PV ILS + + +V GL +GADDY++KPF ELVAR+RA +RRS Sbjct: 61 TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +I GDLS++ V QG + LT E++++ L + +++ + H+Y Sbjct: 121 GNASPVIQAGDLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI ++R+K+ N I+TV G GY + Sbjct: 181 QDFDRDSNTIEVFIGRIRRKIGND-----VIKTVRGLGYRI 216 >gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103] gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103] gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355] Length = 235 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L++ N+ + G + ++ D I+LDL L G + Sbjct: 10 ILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLMLPGKDGLTL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ +++ + D++ GL+ GADDY+ KPF+ E+VAR++ I+RR + Sbjct: 70 CREIR-RDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRVKRS 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V L V+ + + LT E+++++ LSL ++E LNHLYD Sbjct: 129 PEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDY 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ID I LR+KL N + +I V+G GY + Sbjct: 189 RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWEAD 230 >gi|256848039|ref|ZP_05553483.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256715099|gb|EEU30076.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 237 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 15/238 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M IL++ED+ ++ + + K E + G ++ +D ++LDL L Sbjct: 1 MNILMVEDNHSVCEMMAMFFKKEKWTAEFVYDGVKAVDKFNEDPQRWDLVLLDLNLPKKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R P+ +L+ S D+V GL+ GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 61 GMQVAADIRRISPVVPIIMLTARDSESDQVLGLEMGADEYVTKPFSPLTLIARIKALHRR 120 Query: 119 SRGHA----------QSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167 I T +N + + I LT KE+ +++ L+ + Sbjct: 121 IAMGNVGGKEPASESDFDIQTPHFKLNTKTREAFLNDQPIKDLTPKEFDLLKTLASKPKQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E L +++ + + +D I KLR+K+ G I+TVWG GY ++ Sbjct: 181 VFSREQLLQLVWNYEYYGDERTVDAHIKKLRQKIEQV--GPKVIQTVWGVGYKFDDSE 236 >gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J1-208] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ IE+ E + G+ G E E+D I+DL L ++ G Sbjct: 1 MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 TICRKIR-EVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ + + QG + LT KE+ ++ L ++E Sbjct: 120 STSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I +LR+K+ A K ++ TVWG GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDE 226 >gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] Length = 255 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++ + I+ + E VY G +++ K +FD II+D+ + + GF Sbjct: 35 KILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDGFS 94 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R +TP+ +LS + DK+ G + G DDY+ KPF+ +E++ARI AI++R++ Sbjct: 95 ACKEIR-KFKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKS 153 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L +N A+ V + G + +LT KEY ++ L KN LT+ L + Sbjct: 154 GNEPVGETVKFEGLEINFTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEV 213 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + ID I LR L + +I T+ G GY + Sbjct: 214 WGYDFFGDDRTIDTHIKMLRNNLGPY---RKFIVTLRGMGYKFQ 254 >gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina ymp] gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 224 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ + ++ IILD+ L +I G+ Sbjct: 1 MRILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDLPEIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 VL ++R TPV +L+ + DK++G SGADDY+ KPF EL+AR+R++ R Sbjct: 61 GVLASIR-RNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + A ++ DL ++ G RI LT KE+ ++ LL R L++ ++ ++ Sbjct: 120 QVSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFENKLIHTLRGVGYVLE 221 >gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS] gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + D +ILDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR S P+ IL+ M +++ KV L++GADDY++KPF+ EELVAR++ +R Sbjct: 64 IARRLR-KTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLR--HQ 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 121 QHGEVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GIIRTVRGIGYALKTP 222 >gi|160936956|ref|ZP_02084320.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC BAA-613] gi|158440146|gb|EDP17893.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC BAA-613] Length = 221 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 7/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+KA+++ I+ L ++ GE +E+ + FD +ILDL L + G + Sbjct: 3 RILIAEDNKAISNLIKTHLSFAGYDTSQVYDGEFALEILEAEPFDLLILDLMLPKVSGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L RV P+ +++ + + KV+ LQ GADDYI+KPF+ +L+AR+ A++RR R Sbjct: 63 IL--ARVKDCQMPIIVVTALDDLSSKVQCLQVGADDYITKPFDSMDLLARVGAVLRRCRR 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 SL V ++SV+ D V G I LT KE+ ++ L + LT++ L+ ++ Sbjct: 121 RPMSLNVR-NISVDPDQHRVLKDGKEIELTPKEFDLLYYLCSNCDKVLTRKEILSDVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +D+ I +LRKKL I+T+ GY+L+ Sbjct: 180 NYVGETRTVDIHIQRLRKKLDWEGA----IQTITKVGYLLK 216 >gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ L + L++E F V + L + D ++LD L G E Sbjct: 3 KILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGIE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L L+ + + PV +++ + ED ++GL GA DYI+KPF+ +EL+ARIR I R + Sbjct: 63 LLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRHT 122 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL + LD + V + + L E+++++ L ++ L H+ Sbjct: 123 EDDDVNHQLRVGDLVLELDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQHI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRE 223 + + + +DV I +LRK L +A I+TV G GY Sbjct: 183 WGNNACVDARTVDVSIRRLRKTLQSAHPVYSELIQTVRGTGYRFSP 228 >gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A S PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q GDL V+L + G RI LT KE+ ++ELL R+ L+K + + + Sbjct: 121 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +I+V I +LR K+ + + T G GY+L A+DE Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDF-EVKLLHTCRGMGYMLE--AQDE 227 >gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD + A SI+ L+ + ++V + G+ I K + +D I+LD GL + G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVKQHHYDCILLDRGLPNASGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + PV ++ I D+V GL GA+DY+ KPFN EEL ARIRA +R+ + Sbjct: 61 DILKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++ +AKTV G ++LT KE+Q++ L N +T+E LY Sbjct: 121 KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEESLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E I+VFI ++RKK+ + I+T+ G GY + Sbjct: 181 WGEEIESNAIEVFIYQIRKKIGS-----QLIKTIRGLGYRM 216 >gi|188590423|ref|YP_001919717.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251779363|ref|ZP_04822283.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500704|gb|ACD53840.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243083678|gb|EES49568.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + +IE+ L+ EN V+ G + +E+ + I+LD+ + + G Sbjct: 4 VLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEKIHVIVLDIMMPKLDGIRT 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +LS DK+ GL GADDYI KPFN ELVAR+++ +RR Sbjct: 64 CLKIR-ETENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122 Query: 123 AQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ ++ +K++ V+G I +T EY+++ LL+ + + Sbjct: 123 LNIEDEEQILTVKDLVIDTVSKSITVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + V I ++R+K+ YI+ VWG GY + + Sbjct: 183 VWDEPFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEKE 229 >gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174] gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD A+ + L+ + Y G + + + + + IILDL L + G +V Sbjct: 5 ILIVDDDMAINDMLVKYLRKNGYITYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGEQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L ++ + PV LS + K+ L++GADDY++KPF+ EEL+ARI I+RR + Sbjct: 65 LAEIK-KTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYEN 123 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL+++ ++ ++ LT E+ ++++L TK+M L+ Sbjct: 124 QYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQLW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E I+V I LRKK++ K+YI+TVWG G+ + Sbjct: 184 NETLEGTENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKM 225 >gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236 >gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 236 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ LA + L+ + ++ GED + FD ++LD+ L I GFEV Sbjct: 6 LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEV 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 R +R +I P+ +L+ DK+ G + G DDY+ KPF+ EL RIRA R Sbjct: 66 CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G + + G L V++ +V + G + LT E++++ L RK ++EM L+ Sbjct: 126 RQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++D + ID I +LR+KL + I+TV G GY E D Sbjct: 186 VWDVDRSINTRTIDTHITRLREKLGESGRQ---IKTVRGLGYKFDEEGDD 232 >gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae TIGR4] gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54] gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974] gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2] gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae] gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6] gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00] gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195] gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04] gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06] gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016] gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54] gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031] gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14] gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B] gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375] gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301] gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317] gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +EL K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI G+L +N + V++ + LT K ++++ +L+ +K ++ Sbjct: 125 GETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWKE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224 + ++V I LR++L+ + + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228 >gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)] gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)] Length = 224 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 237 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++I+DD+ + I+ L+ + F+ + G+D ++ + D IILDL L D G + Sbjct: 4 KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LRV KI P+ +L+ D++ GL+ GADDY+ KPFN EL+ARI +I RR Sbjct: 64 ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I + N +T++ I LT E+ ++++ N L+++ Sbjct: 124 ELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + IDV I ++RK + Y++T WG GYV Sbjct: 184 IMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >gi|89052908|ref|YP_508359.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88862457|gb|ABD53334.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++D+ L ++ L E+F+V+ G +E K +D +ILD+GL D G Sbjct: 6 KILLVDDEDDLREALSEQLVMTEDFDVFEAANGAQAMERAKEGIYDLVILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + PV +L+G S D + GL +GA+DY++KPF L+ARIRA +R+ Sbjct: 66 ELCRLMRKQGVKCPVLMLTGHDSDADTILGLDAGANDYVTKPFRFPVLLARIRAQLRQHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + K + +I LT KE +++ L ++ + +++ L+ ++ Sbjct: 126 QSEDAVFQLGPYTFKPAMKMLITEDERKIRLTEKETNILKFLYRAQDGVVARDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 227 >gi|87119833|ref|ZP_01075730.1| DNA-binding response regulator [Marinomonas sp. MED121] gi|86165309|gb|EAQ66577.1| DNA-binding response regulator [Marinomonas sp. MED121] Length = 220 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L I+ L E + V G+ G+ +FD ++LDL L + G Sbjct: 1 MRVLLVEDDELLGKGIKKSLTREGYQVDWLMDGKQGLAALNTEQFDLLLLDLNLPGMGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +++TPV IL+ S++DK++GL GADDY+ KPF EL AR+RA+ RR Sbjct: 61 DILSAIRKQQLNTPVLILTANDSLDDKIQGLDLGADDYLPKPFEIAELKARMRALSRRHH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH++ I G L +N + V + G + L +E+ ++ L++ + +Y Sbjct: 121 GHSEPTIQFGRLHINPASMQVTLDGKDLTLGRREFTLLMEFVNHPGQILSRAKLEDVVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E I+V I LRKK+ +I+TV G GY + A Sbjct: 181 WDGDVESNSIEVHIHHLRKKV-----YPEFIKTVRGMGYKAEKPA 220 >gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ A + L+++ F V + GE+G+ L + D I+LD + ++ G EV Sbjct: 8 VLIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIEV 67 Query: 63 LRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R R P+ +LS S DKVRGL++GADDY+ KP++ EL+AR+R +RR R Sbjct: 68 CRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ ++ + V + + L E++++ + ++E L+ ++ Sbjct: 128 PSTVGMRLEFDDIILDAETHKVSRSDNSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LRK L+ GG + + TV G GY L Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQ-FGGADPVRTVRGAGYAL 228 >gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 222 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ ++ ++ L+ + G G+ L + D +ILDLGL D+ G E Sbjct: 4 RILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ IL+ M +++ KV L++GADDY++KPF EELVAR++ +R Sbjct: 64 VTRRLR-KNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLR--HQ 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I GDL ++ + +GH + L+ +E+ ++ L+ + ++ ++ G Sbjct: 121 QHGDVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVWSG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGY-GLIRTVRGIGYALKTP 222 >gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A +E L+ E F G + L + D ++LD+ L ++ G EV Sbjct: 14 VLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDGLEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR +R + TPV +++ + DK+ GL+ GADDY++KPF+ E+VAR++A++RR Sbjct: 74 LRRIR-SSGHTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVVLA 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L ++ + + G R+ LT E++++E L+ ++ L Sbjct: 133 EAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAAL- 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++DV + LR+KL AAGG +ETV G GY L Sbjct: 192 PDSDALERVVDVHLKNLRRKLE-AAGGAGLLETVRGVGYRL 231 >gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] Length = 220 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD+ + +++++ L + V G++ + +ILD+ L + G Sbjct: 3 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMNGH 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV +++ +S E+++R + ADDY++KPF + L+ R+ A++RRS Sbjct: 63 ELLREFR-KLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ L G L++ + V + LT KE++++ LL TL+ E+ L+ ++ Sbjct: 122 AVAKELHY-GKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + I LR KL + I+TV G GY L E + Sbjct: 181 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 220 >gi|195977456|ref|YP_002122700.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974161|gb|ACG61687.1| DNA-binding response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + E L+ + V G +EL ++D II D+ + ++ G++ Sbjct: 4 KILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIISDVMMPNMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + K P ++ +S DK+ L GADD+ISKPF+ ELV R++ I+ R G Sbjct: 64 FIGEVLLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNRIYG 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A V GDL ++ + V V ++LT K + ++ +L+ N +K ++ Sbjct: 124 KANQADSLVIGDLVMDHSTRRVTVANQDLNLTNKAFDLLWILANHLNHVFSKTELYERVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223 + + ++V I LR L+ + + I+TVWG GY L E Sbjct: 184 EEEYLDDTNTLNVHIHSLRNDLAKYSTEQTPTIKTVWGLGYKLEE 228 >gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 I +++D + + L E + + V G + L D IILD+ + G Sbjct: 6 HIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + PV LS + D + GL+ G DDY+ KPFN EL+AR++A++RR+ Sbjct: 66 LCRHIRSRSNT-PVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ I G+ +N + + G + L+G E++++ L + +T++ Sbjct: 125 ASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN + EP + ID I +LR+K+ YI T WG GY Sbjct: 185 LLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii DJ] gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii DJ] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ + + + + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R + Sbjct: 66 ARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTA 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225 >gi|325571287|ref|ZP_08146787.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325155763|gb|EGC67959.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 14/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M IL+IED+++++ +++ +E + G++G+E +D I LDL L + Sbjct: 1 MNILMIEDNESVSEMMQMFFLNEGWEAVFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117 G V R +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ R Sbjct: 61 GMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 120 Query: 118 --------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168 A IVT +N + + G I LT KE+ ++ L+ + Sbjct: 121 SELVEKTTPEASDATFDIVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQV 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E L ++D + + + +D I KLR+K+ G I+TVWG GY + Sbjct: 181 FSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 233 >gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 227 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V + + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR I PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G + L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230 DE E ++V I LR+KL N+ +ETV G GY L A +E Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNS-----IVETVRGLGYRLGPAQAPEEAA 226 >gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 226 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ L SI L+ + V G G ++ +D ++LD+ L + GF Sbjct: 1 MKLLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNYDLVVLDINLPYLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR V IL+ + I+D VRGL +GA+DY+ KPF+ EL ARIR+++RR + Sbjct: 61 TLLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRRQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI S NL K V G + LT KE ++E L L + +++E L H+++ Sbjct: 121 VQEDLLITCQGFSFNLKTKAVSCAGGELRLTSKELSILEYLLLNRGRHVSQEELLEHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + V + LRKKL A G I GRGY++ + + Sbjct: 181 DGMNEFSNTVRVHVSALRKKLKAATGR-VVITNEIGRGYIIEADGTE 226 >gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00] gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +EL K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI G+L +N + V++ + LT K ++++ +L+ +K ++ Sbjct: 125 GETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWKE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224 + ++V I LR++L+ + + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228 >gi|108800890|ref|YP_641087.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870030|ref|YP_939982.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126436516|ref|YP_001072207.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771309|gb|ABG10031.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696119|gb|ABL93192.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126236316|gb|ABN99716.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 254 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + L+ E +++ G I L + D ++LD+ L D+ G + Sbjct: 30 RVLVVDDEPVLAELVSMALRYEGWDIATAGDGATAIALARENPPDVVVLDVMLPDMSGLD 89 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR P+ +L+ S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR+ Sbjct: 90 VLAKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTGV 149 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + IV GDL ++ D+ V G I LT E++++ + L+K L+ ++ Sbjct: 150 SESGGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNSKRVLSKAQILDRVW 209 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 I+++++ LRKK+ +G + I T+ G GYVL+ A+ Sbjct: 210 SYDFGGRSNIVELYVSYLRKKI--DSGREPMIHTLRGAGYVLKPAAR 254 >gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435] gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 128/220 (58%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L +N++V + G+ G++ +D IILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + + P+ I++ S DKV GL GADDYI KPF EEL ARIRA++RR Sbjct: 64 CRRVRQEQST-PIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQPQK 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I + +++DA V + G ++ T EY ++ LL+ +N L +E L+H++ Sbjct: 123 DIIDING--IKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPYGKDKT-IETVRGVGYVIR 219 >gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator protein [gamma proteobacterium IMCC1989] gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator protein [gamma proteobacterium IMCC1989] Length = 236 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 13/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--------DAIILDL 52 M+IL+IEDD + ++ LK+E + + + G G+ L + +ILD+ Sbjct: 1 MKILVIEDDPRVHGFLQRGLKAEGYQTELAEDGATGLGLARELHKAFRDNAEKSLVILDI 60 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + ++ G EV + LR P+ +L+ ++ +D+V GL++GADDY+ KPF+ EEL+ARI Sbjct: 61 MMPEMNGLEVCQQLRAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELLARI 120 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + RR +L + V I LT KE ++EL+ Sbjct: 121 EGLARRGLVAPDKQRAKQLSVADLHLDLDSMRVFRGDEEISLTAKELALLELMMRSVGRL 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++E L++++ ++P I+DV+I +LR K+ I T G GY L Sbjct: 181 FSRERILSNVWGLNEDPLTNIVDVYIRRLRNKIDTDNK-PQLIHTQRGLGYRLE 233 >gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A L+ ++V + G+ G+ +F+ IILDL L +I GFE Sbjct: 4 RILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ ++S DK+RGL GADDYI+KPF+ ELVAR+ A + R Sbjct: 64 ICRKIR-ESKNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +L ++ D++ V ++ I LTGKE+ ++ ++ N ++E Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 DNIWGMDACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGYRFK 229 >gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18] gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 247 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D++ L + + LK + V G + + + + D ++LD+ + G Sbjct: 23 IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE--ELVARIRAIVRR 118 E+L +R P L+ S+++++ GL +GADDY++KPF+ E + Sbjct: 83 ELLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 142 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V GDL +N D + V G +I+LT ++ ++ L ++K L+++ Sbjct: 143 VASIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNV 202 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++++I LRKK+ G + I TV G GYVLR Sbjct: 203 WNYDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVLRP 245 >gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 241 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 111/234 (47%), Gaps = 2/234 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + ++ L + F V +G+ + + D I+LD+ L G V Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + +R + +++ + EDKVRG ++GADDY++KPF +ELVARI A R G Sbjct: 68 CQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSDAG 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H ++ GDLS++ +V G + L KE++++ L+ ++E ++ Sbjct: 128 HRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVWGH 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + IDV I ++R L + +YI T G GY + E Sbjct: 188 AGVGSSRTIDVHIRRIRAALEKKSAY-DYIHTARGLGYRFEPVPRRERVATPPP 240 >gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 243 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 3/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA + L++ + + GE+ + + I+LDL L G + Sbjct: 16 VLIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLMLPGRDGLTL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R + P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ ++RR R Sbjct: 76 CRAIRG-FSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134 Query: 123 AQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L + ++ + G + LT E+++++ LS ++E L+HLYD Sbjct: 135 HEPLPNDVLPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ID I LR+KL ++I TV+G GY A E Sbjct: 195 DYRVVTDRTIDSHIKNLRRKLEVFDRETSFIRTVYGIGYRWEAAASQE 242 >gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED K + + +L E F V+ G DG + K ++D I+LD+ L G E Sbjct: 3 KILVIEDSKDVNSMLSEILTEEGFEVFSAYTGTDGFKEIKENQYDLILLDIMLPYKSGDE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV ++S +I K+ L+ GADDY++KPF+ E+VAR+ A +RRSR Sbjct: 63 ILKEVR-KFSDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSRI 121 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQS D++V++D+K + V G + LT KEY ++ELL ++ TK ++ Sbjct: 122 KAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + LR KL A + YIETVWG GY L Sbjct: 182 QEAYLGDDNAVKTHMSNLRSKLKTANAQQEYIETVWGLGYRL 223 >gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 260 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 17/245 (6%) Query: 1 MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+I LLIEDD+ + + L+ F+V + G G L Y D I+LDL L + Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60 Query: 59 GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G + + LR + + P+ +++ + ++DKV G SGADDYI+KPF+ EEL RI+A++ Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120 Query: 117 RRSRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RR+ + Q ++ G L++ + I LT E++++ L R T++ Sbjct: 121 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-------E 223 + L ++ + +++ I V I LR KL YI+TV+G GY L E Sbjct: 181 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLELPIGSQVE 240 Query: 224 NAKDE 228 A++E Sbjct: 241 TAREE 245 >gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes HCC23] gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes HCC23] gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ IE+ E + G+ G E E+D I+DL L ++ G Sbjct: 1 MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 TICRKIR-EVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ + + QG + LT KE+ ++ L ++E Sbjct: 120 SASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I +LR+K+ A K ++ TVWG GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDE 226 >gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. Sakai] gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4113] gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4401] gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4501] gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4486] gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4196] gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4076] gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC869] gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC508] gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. EC4024] gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4206] gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4045] gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4042] gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7 str. EC4115] gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. TW14588] gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. TW14359] gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. FRIK2000] gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. FRIK966] gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4196] gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4113] gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4076] gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4401] gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4486] gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4501] gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC869] gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC508] gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4206] gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4045] gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4042] gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7 str. EC4115] gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli] gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli] gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli] gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. TW14588] gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. TW14359] gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212] gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. G5101] gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H- str. 493-89] gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H- str. H 2687] gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. LSU-61] gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044] gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + G+ + + D I+LDL L G Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L ++ +G + LT E+++++ LS ++E LNHLY Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +++I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 >gi|320107016|ref|YP_004182606.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925537|gb|ADV82612.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 246 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+AL +E LK E V G+ ++ + D ++LDLGL G Sbjct: 1 MRVLVVEDDRALGLFLERGLKLEGHEVAWVGDGDAAVDYVMEHRLDLMVLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+AL+ + +L+G IED++ L GADD + KPF+ EL+AR RA+ RR Sbjct: 61 DVLQALQGLHGGMAILVLTGRVGIEDRISSLNLGADDCMMKPFSFHELIARCRALERRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DL+++ + V+ G + LT KE+ ++E L L + ++++ L ++ Sbjct: 121 FPVDSVLRHDDLTMDRMHRKVQRGGEPVDLTVKEFALLEYLLLHHDRCVSRKELLAKVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNA----AGGKNYIETVWGRGYVLR 222 E ++DV++ LRKKL G + IETV G GY LR Sbjct: 181 MAPEAGTNVVDVYVNYLRKKLEPKVASLFGVSSLIETVRGEGYRLR 226 >gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA] gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA] Length = 227 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDDK + + L LK + + V GE+G+EL +D ++LDL L G E Sbjct: 6 KILIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ I + ++ DKV L GA+DYI KPF EEL+ARIR + R Sbjct: 66 LCQEFR-KLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNREN 124 Query: 122 HAQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I + +L K V + I LT E+ ++E + + ++E L ++ Sbjct: 125 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E KI+DV+I LRKK+ YI T+ G GY+ + Sbjct: 185 YDFDGEEKIVDVYINSLRKKMDT---ESKYIHTIRGFGYIFQ 223 >gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD+ + + L SEN++V G IE+ K Y FD I+LDL L GF Sbjct: 1 MDILLVEDDRNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + PV I + S DK+ GL GADDYI+KPF+ EL+ARI+A +RR+ Sbjct: 61 EVLKYIR-SVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119 Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I DL +N+ V G ++LT E+++++LL+ + +KE Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ +++ I +LR KLS+ NYI+T+WG GY + E Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEEE 229 >gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + G++ + L +D +++D + + G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR ++ PV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTEN-GLPDPIKTIRGFGYVIQE 229 >gi|148998276|ref|ZP_01825745.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP11-BS70] gi|149010780|ref|ZP_01832151.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP19-BS75] gi|168485715|ref|ZP_02710223.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576498|ref|ZP_02722372.1| VncR, response regulator [Streptococcus pneumoniae MLV-016] gi|307067219|ref|YP_003876185.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126802|ref|YP_003878833.1| VncR, response regulator [Streptococcus pneumoniae 670-6B] gi|147755919|gb|EDK62963.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP11-BS70] gi|147765261|gb|EDK72190.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP19-BS75] gi|183571082|gb|EDT91610.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577727|gb|EDT98255.1| VncR, response regulator [Streptococcus pneumoniae MLV-016] gi|301793794|emb|CBW36185.1| two-component system, response regulator [Streptococcus pneumoniae INV104] gi|306408756|gb|ADM84183.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483864|gb|ADM90733.1| VncR, response regulator [Streptococcus pneumoniae 670-6B] Length = 218 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYKDTKV-DFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05] gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05] gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] Length = 268 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|15807318|ref|NP_296048.1| response regulator [Deinococcus radiodurans R1] gi|6460139|gb|AAF11874.1|AE002064_5 response regulator [Deinococcus radiodurans R1] Length = 220 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A L+ + V G +G+E EF ++LD+ L + GF Sbjct: 1 MRLLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ LR A++ +P+ L+ + D+V+GL G D Y+ KPF EL+A++RA+ RR R Sbjct: 61 EIAGQLREAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRER 120 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + G ++ A+TV G + +TG+EY+++ L+L LT+E L+ + Sbjct: 121 GQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + E +I+DV++ LR+KL+ I + GRGY Sbjct: 181 WGPEFGGEARIVDVYVRYLRRKLA-----PEAISSERGRGYR 217 >gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] Length = 238 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 9/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L ++++ G + E+C+ + D ++LD+ + G Sbjct: 5 KILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIMMPGEDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 +LR A PV +L+ M+ D++ GL+ GADDY++KPFN ELVARI+A++R Sbjct: 65 LLREW-QATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRAGG 123 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173 A +++ + + H I LTG E+ ++ +L L+++ Sbjct: 124 EGANPPPDACEGYSFAGFHLDIGRRHLTGPDHPSIPLTGGEFALLHVLLDSAGRVLSRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ + ID I ++RKK+ I+TV GYVL Sbjct: 184 LLDATQGREAHLFDRSIDNQISRIRKKIELDPKQPQIIKTVRNGGYVLSVPV 235 >gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198] gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198] Length = 235 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L+S + Y G + K +D I+LDL L G V Sbjct: 10 ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLMLPVKDGITV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ ++RR Sbjct: 70 CKELR-QFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRFYRP 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + ++ A ++ + LT E+++++ L+ + LT++ ++HLYD Sbjct: 129 QDIVQNDKLVVIDEQAYQIQYNNKILDLTTAEFRLLKALATQPGKILTRDQLMDHLYDDY 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ID I LR+KL +I +++G+GY A Sbjct: 189 RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWETQA 231 >gi|146339743|ref|YP_001204791.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|148254517|ref|YP_001239102.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146192549|emb|CAL76554.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [Bradyrhizobium sp. ORS278] gi|146406690|gb|ABQ35196.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ + + ++D +++D L G Sbjct: 9 MRLLIIEDDRESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKRDGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ ALR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 69 SLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 128 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V + L +E++++E L +T+ M L +++ Sbjct: 129 GPAEETTYKVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV I +LR K+ + T+ G GY++R+ Sbjct: 189 DYHFDPQTNVIDVHISRLRSKIDKGFDRP-LLHTIRGAGYMIRD 231 >gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato Max13] gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato K40] gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + + + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PTDGESPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L +A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225 >gi|323466878|gb|ADX70565.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Lactobacillus helveticus H10] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 15/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 RIL++EDD ++A + + K E + + G + +++ K ++D I LDL L G Sbjct: 4 RILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 64 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123 Query: 120 RG----------HAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTT 168 + + I T L ++ D + V + LT KE+ ++ ++ + Sbjct: 124 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQPVVDLTPKEFDLLYTMAQKPKQV 183 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237 >gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium 3_1_46FAA] Length = 239 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +++++D+K + +SI +LK E + V G + + L + D I+LD+ + + G Sbjct: 11 VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR K PV ILS + DKV GL GADDY+ KP+N EL+AR++A +RR R Sbjct: 71 LMKLR-EKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 129 Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I+ G L ++ + V V+G + LT EY+++ELL + E Sbjct: 130 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 189 Query: 176 NHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +R+K+ A Y++ VWG GY + + Sbjct: 190 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKMEK 238 >gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 231 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV +LS +S KV L GA+DY++KPF +E +AR+RA++R+ Sbjct: 67 LRELR-EWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G L+V+ + V ++G + LT KEY ++ LL+ +T++ L ++ Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + + LR+KL + +I T G GY L Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229 >gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] Length = 225 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE L+ V V G DG +L + FD ++LD+ + + G + Sbjct: 3 KILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNGLD 62 Query: 62 VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI A++RRS+ Sbjct: 63 LCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRRSK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL ++ + + H + LT KEY+++E + L++ L H++D Sbjct: 123 EKRTSELVCGDLILDCNTRRARRGDHEMELTVKEYRLLEHFMNNQGVVLSRVNLLKHVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV++ LR K+ I TV G GY++ Sbjct: 183 KNFDTNTNVVDVYVNYLRTKIDKDYEN-KLIHTVVGLGYIME 223 >gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 263 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 17/245 (6%) Query: 1 MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+I LLIEDD+ + + L+ F+V + G G L Y D I+LDL L + Sbjct: 4 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 63 Query: 59 GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G + + LR + + P+ +++ + ++DKV G SGADDYI+KPF+ EEL RI+A++ Sbjct: 64 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 123 Query: 117 RRSRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RR+ + Q ++ G L++ + I LT E++++ L R T++ Sbjct: 124 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVS 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-------E 223 + L ++ + +++ I V I LR KL YI+TV+G GY L E Sbjct: 184 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLELPIGSQVE 243 Query: 224 NAKDE 228 A++E Sbjct: 244 TAREE 248 >gi|88860480|ref|ZP_01135118.1| response regulator (activator) in two-component regulatory [Pseudoalteromonas tunicata D2] gi|88817678|gb|EAR27495.1| response regulator (activator) in two-component regulatory [Pseudoalteromonas tunicata D2] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 2/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL+EDD L + L F V V G + + + + D +ILD+ L GF Sbjct: 3 HILLVEDDLVLQQLTKEYLIHNGFTVSVLGNGSEVLSSVQSLQPDLMILDVMLPGKDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K S P+ +L+ D+V GL+ GADDY+ KP LVARI AI+RR + Sbjct: 63 VCREVR-DKHSLPILMLTAKGEDFDQVVGLEFGADDYVVKPVEPRVLVARINAILRRHKP 121 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H Q V G L ++ ++ V + I LT E++++ LL+ L ++ + Sbjct: 122 HRQHEELVFGQLKIDKTSRLVFLNQEEITLTSHEFELLWLLASNAGEVLNRDYVHQQMIG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +DV I +LRKKL + I+TVWG+GY+ +A Sbjct: 182 REYDGLDRTVDVRISRLRKKLLDNTDKPYRIKTVWGQGYLFVSDAW 227 >gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii ECD227] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V G +G E +DA+ILDL L I G Sbjct: 11 MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 71 DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V I LR+KL + +I TV G GY L E Sbjct: 191 WDEEVTSNAVEVHIHHLRRKLGS-----GFIRTVHGIGYTLGE 228 >gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + + L E F V G + +E+ + FD I+LDL L D+ G++V Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + + S +DKV GL GADDY++KPF EEL+AR+ +++RRS Sbjct: 76 CKKIREKDHVAILML-TARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 AQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L + + + V + H + T KE+ + L+ + ++E +N Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E EV+++D I +R+K A G N I+TVWG GY Sbjct: 195 IWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKF 238 >gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 226 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT--DIP 58 MR+LL+EDD LA I L+ + V G + + +D +ILD+ L Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 GF++ R LR + P+ L+ ++ K+ GL +G DDY++KPF+ EL ARIRA + R Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + ++L A V G + LT +EY ++E L L ++ + Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G E + K++DV++ LR+KL ++ETV G GY L Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKLGED-----FVETVRGLGYRL 219 >gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator [Delftia acidovorans SPH-1] gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 7/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA + L E F V V G DG+ L +D I+LD L I G Sbjct: 4 MKVLVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGMLPGIDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR TPV +L+ +ED+VRGLQ GADDY+ KPF ELVAR+ ++RRS Sbjct: 64 AVLAALR-QSRQTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSV 122 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A ++ DL ++L + G R+ LT KE+ ++ LL R+ L++ Sbjct: 123 GTAHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++D + E +++V + +LR KL + + + TV G GYVL A Sbjct: 183 SQVWDMNFDSETNVVEVAVRRLRLKL-DQPFEQPLLHTVRGMGYVLESRAP 232 >gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] Length = 225 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L L +N GE+ I + F ++LD+ + + G+E Sbjct: 4 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +++ D V+GL+ GADDY++KPF++EEL ARI A++RR+ Sbjct: 64 CKKIR-SFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q + + V V + LT E+ ++ L N L+++ + ++ Sbjct: 123 TQIQYH--GILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180 Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRE 223 E + +D I LR KL ++++TV+G GY + Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRWVD 222 >gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 128/229 (55%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ +A ++ L+ E F+V GE+G L FD ++LDL L G Sbjct: 1 MRLLLVEDEREIADFLKARLEGEGFDVVAAVTGEEGFFLANEQVFDVVLLDLTLPGRGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR I+ PV ++SG S+EDKV GL +GADDYI KPF E++ARIR ++RR Sbjct: 61 EVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPFAFPEVLARIRVVLRRGW 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL+++L + V G I LT +E++++E L +T++M ++ Sbjct: 121 ADQVLLLRCGDLAMDLITRIVTRGGRTIALTAREFELLEYLLRHPGRVVTRDMLARDIWQ 180 Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +IDV I ++RKKL + + + T G G+ L+ D Sbjct: 181 EDTRATNLDNVIDVHIARIRKKL-DHGHERKLLHTQRGVGFQLKNPELD 228 >gi|225352770|ref|ZP_03743793.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156377|gb|EEG69946.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 10/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++DD+AL + ++L+SE F G +E+ + D ++LD+ L + G +V Sbjct: 13 IMIVDDDQALGEMLSIVLESEGFKTVTCLDGWRAVEMFPTLQPDLMLLDVMLPGLDGVQV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R +TP+ +L+ S D V+GL++GADDY+SKPF EL+ARIRA +R + + Sbjct: 73 AQRIR-QNSNTPIIMLTAKSDTTDVVKGLEAGADDYVSKPFEVVELMARIRARLRMPKVN 131 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + G L ++ T G + LT E++++ +L+ L++ Sbjct: 132 APAGKDEGDLTERLQCGTLVMDRAEHTATKDGVDLQLTPTEFELLYVLAAHAGEALSRAN 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + ++++V + +LR K+ ++TV G GY Sbjct: 192 LLKRVWGYESGGDTRLVNVHVQRLRMKVETDPENPRIVQTVRGIGYKFVAP 242 >gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 239 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ + F V G ++ + + A+I+D+ + I GF Sbjct: 13 RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGFG 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR I PV L+ ++DKV GL GADDYI+KPF+ EE+VAR+R ++RR+ Sbjct: 73 LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRRAGH 132 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S I D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 133 GAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ EV +++ ++ LRKK+ G + I T+ G GYV+R + Sbjct: 193 VWRYDFGGEVGVVETYVSYLRKKV--DTGERRLIHTLRGVGYVMRAPGR 239 >gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 224 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + + ++L+ ++ G +G+ L E I+LDL L + G V Sbjct: 4 ILIIEDDAGINDMLRVLLRQNGYDTISAYSGTEGL-LAHGEEVSLILLDLMLPGLSGEAV 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ L+ K + PV + S + + KV GADDY++KPF+ EEL+ARI A +R Sbjct: 63 IKGLK-EKKNVPVIVTSAIHDVSKKVDLFALGADDYVTKPFHNEELLARISARLRNVLPE 121 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 D+ +N TV G + L+ E+ ++EL T TK + ++D Sbjct: 122 QTKGDVLTYKDIILNKSEHTVSCHGTAVELSKHEFALLELFMESPKRTCTKSRIYDTVWD 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++V I KLRKKL + ++YIETVWG GY LR+ Sbjct: 182 YENSADDNTLNVHISKLRKKLKECSPDEDYIETVWGIGYRLRK 224 >gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16] gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G DG+ + + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV L+ + D+++GL+ GADDY+ KPF ELV RIR I+RR Sbjct: 61 QVLRELRRE-RDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++ + V G +I LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++DV I +LR K+ + I T G GYVL ++++D Sbjct: 180 VNFDSNTNVVDVSIRRLRAKV-DDPFPHKLIHTRRGMGYVL-DDSED 224 >gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357] Length = 219 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL + +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218 >gi|322374704|ref|ZP_08049218.1| DNA-binding response regulator VncR [Streptococcus sp. C300] gi|321280204|gb|EFX57243.1| DNA-binding response regulator VncR [Streptococcus sp. C300] Length = 218 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + I L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGISDYLTDCGYETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRVFSYKDTKV-DFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|153831657|ref|ZP_01984324.1| response regulator receiver domain protein [Vibrio harveyi HY01] gi|148872167|gb|EDL70984.1| response regulator receiver domain protein [Vibrio harveyi HY01] Length = 243 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD LA +++ LK + V + + FD +ILD GL D G +V Sbjct: 12 ILLVEDDDDLAELVQMHLKFQGHQVLRATNIAEAKAQYQQQSFDLLILDRGLPDGDGLDV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + PV +L+ DKV GL++G DDYI+KPF+ E AR+R ++RR Sbjct: 72 CHYLRQKQDWNPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSHT 131 Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G L + + V + + LT E+ +++ L+ R +K+ Sbjct: 132 TEVQTDKNVVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSKDE 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+H+++ + I +LR KLS + ++I+TVWG GY + Sbjct: 192 LLDHVWNTNHSGYHHTVCSTINRLRSKLSLSGSDHHFIQTVWGVGYKFQP 241 >gi|116696499|ref|YP_842075.1| response regulator [Ralstonia eutropha H16] gi|113530998|emb|CAJ97345.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 237 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MR+LL+EDD + S++L L+ E F V G+ G+ + +D I+LDLGL Sbjct: 1 MRVLLVEDDAMIGDSVKLALRQEGFTVDWVRDGDAGLAAASTAQHGQACYDLILLDLGLP 60 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 PG +VLR LR + TPV IL+ ++ D+V GL +GADDY+ KPF+ +EL AR+ A+ Sbjct: 61 RRPGLDVLRTLRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHAL 120 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ G A+ L+ GD+ +N + +G + L+ +E+ ++ L R + Sbjct: 121 ARRAAGRAEPLVSYGDIVLNPTTREATHRGEPVRLSAREFALLAALMARPGKVWSVPQLQ 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 LY DE ++V+I LRKK A I + G GYV Sbjct: 181 ERLYGWDDEVGSNTVEVYIHALRKKFGAA-----LIRNIRGVGYV 220 >gi|22536576|ref|NP_687427.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010502|ref|NP_734897.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76787873|ref|YP_329113.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76799057|ref|ZP_00781250.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77406449|ref|ZP_00783506.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408785|ref|ZP_00785515.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77411642|ref|ZP_00787982.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413961|ref|ZP_00790135.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533411|gb|AAM99299.1|AE014209_12 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23094855|emb|CAD46073.1| gbs0429 [Streptococcus agalactiae NEM316] gi|76562930|gb|ABA45514.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76585594|gb|EAO62159.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77159997|gb|EAO71134.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77162286|gb|EAO73257.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77172630|gb|EAO75769.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174951|gb|EAO77763.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744355|gb|EFV96715.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D+ + L+ + V V G + ++ FD II D+ + + G++ Sbjct: 4 KLLLVDDEFEIIDINRRYLEQAGYEVSVAADGIEALKEVDENRFDLIISDIMMPKMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + V + + P ++ S DK+ L GADD+ISKPF+ ELV R++ I+RR G Sbjct: 64 FISEVLVREPNQPFLFITAKVSEPDKIYSLSMGADDFISKPFSPRELVLRVKNILRRIYG 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q GDL ++ + V V + I LT K + ++ +L+ N +K ++ Sbjct: 124 NHQQSEVLTIGDLVIDQKQRLVMVDCNTISLTNKSFDLLWILANHLNRVFSKTELYERVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRE 223 + ++V I LR L+ + I+TVWG GY L E Sbjct: 184 GEEFLDDTNTLNVHIHALRNDLAKFSTDNTPTIKTVWGLGYKLEE 228 >gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 247 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 17/238 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL++EDD+ + IE+ L+ + + V+ G +G+ + + E I+D+ + + G Sbjct: 11 HILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVLEKEEILLAIVDIMMPRMDGIT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR + PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR R Sbjct: 71 MVIKLR-EQYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 129 Query: 122 HA---------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 +++ G L +N D + V G + +T E++++ LL Sbjct: 130 FMKLLEEKEAGGQEKQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 189 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E +++ R + V + +R+K+ Y++ VWG GY + + Sbjct: 190 HVFSAEEIYERVWNERA-VNTDTVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIEKQ 246 >gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + H + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225 >gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ EDD + + L L + V G D +E+ + + ++D+ + + G+++ Sbjct: 5 VLIAEDDGDIIEILSLYLGGSGYEVRAARNGADALEILRREQVAVALVDIMMPKMNGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++A R P+ I+S + DK+ GL +GAD YI+KPF+ E+ A IRA++RR H Sbjct: 65 IKAARAESQV-PIIIISARAEAADKIIGLDAGADGYITKPFDPLEVTAYIRAVLRRGGSH 123 Query: 123 AQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + GDL + + + G I LT E +++ L R TK Sbjct: 124 GHATQSLSGRGDGRIQVGDLEFDTERLCLAKGGEPIALTAAELRIVAALMSRPGRIFTKA 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V I +R KL + +I+TV G GY L Sbjct: 184 QLYACVNGRPCDSGANSVMVHISNIRAKLEDDPLSPRFIKTVRGLGYRLE 233 >gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 633 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 1/229 (0%) Query: 7 EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66 EDD + L + ++NV V G+ G++L + Y +D +LD+ + + G V + L Sbjct: 2 EDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGISVCQQL 61 Query: 67 RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126 R + P+ +L+ S D++ GL +GADDYI KP N E L+ARIRA++RR S+ Sbjct: 62 RSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLSSV 121 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 I G+L +NL V + IHLT KEY ++EL + + + L L+D + P Sbjct: 122 IEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGESPG 181 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + + I LR+KL AG + IETV+G GY LR+ + +T L T Sbjct: 182 EETVSTHIKCLRQKL-KNAGVSDPIETVYGLGYRLRKADEIDTSPNLST 229 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST--PVCILSGM 81 N V E+ Y + ++LDL + G E+ + +R P+ LS Sbjct: 536 NIEVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIY 595 Query: 82 SSIEDKVRGLQSGADDYISKPFNK 105 + E + +GADDYISK + Sbjct: 596 TDEEMIQQMFAAGADDYISKQSDH 619 Score = 38.0 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT--DIPGF 60 IL+I+DD ALA + + ++ N N+ + ++ IILDL GF Sbjct: 389 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 448 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102 +L L ++ + P+ I +G S+ D+++ + GA ++ KP Sbjct: 449 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 490 >gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI-PGF 60 RIL+++D++ + + L + ++V+V G + +E+ K ++ D I+LDL + G Sbjct: 7 RILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLHQPDLILLDLCMPGELDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V +R P+ +LS MS KVR L GADDY++KPF EEL+AR+RA +RRS+ Sbjct: 67 DVCVEVRHRGQKPPIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACLRRSQ 126 Query: 121 GHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + I G L ++L + V+ + + LT E+++++ L L LT Sbjct: 127 SNEGEEIQQVPELLISEDGYLYMDLARRLVKAGNNEVRLTPTEFELLKQLMLCAGKVLTH 186 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ E + V++ +LR K+ YI T G GYV R + Sbjct: 187 RALLRAVWGPEYGEEADYLRVYVRQLRLKVEAKPSHPRYIITEPGIGYVFRGQVE 241 >gi|300023806|ref|YP_003756417.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299525627|gb|ADJ24096.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 1 MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56 M+ I L++D++ + S+ + L++E + V G +E D I D+ + Sbjct: 1 MKEKSTIALVDDERNILTSLRMALEAEGYKVRTYGDGVSALEALTEEPADLGIFDIKMPR 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G E+LR +R PV L+ D++ GL+ GADDYI+KPF++ +V R++A++ Sbjct: 61 MDGMELLRRVRQQSTM-PVIFLTSKDEEIDELFGLKMGADDYIAKPFSQRLIVERVKAVL 119 Query: 117 RRSRGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 RR + ++ G L ++ + T + LT E+ +++ L+ R Sbjct: 120 RRVSPKDGATVEDEAKRVLERGKLKLDPERHTCHWDSKPVTLTVTEFLILQALATRPGVV 179 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 T++ ++ YD + + + ID I +LRKK + IET++G GY +E Sbjct: 180 KTRDALMDAAYDDQVYVDDRTIDSHIKRLRKKFKQVDDDFDVIETLYGVGYRFKE 234 >gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + L + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ TP+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R + Sbjct: 66 ARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAT 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++S I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PVDSESPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225 >gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + H + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225 >gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system with BaeS [Dickeya dadantii 3937] gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system with BaeS [Dickeya dadantii 3937] Length = 273 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 3/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA + L++ ++ + GE+ + + I+LDL L G + Sbjct: 46 VLIVEDEPKLAQLLVDYLQASGYHTHWLTQGEEVEPWVREHPCQLILLDLMLPGRDGLTL 105 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R + P+ +++ + D++ GL+ GADDYI KP++ E+VAR++ ++RR R Sbjct: 106 CRAIRG-FSNVPIIMVTARTDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 164 Query: 123 AQSLIVTGDLS--VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L + ++ + G + LT E+++++ LS ++E L+HLYD Sbjct: 165 HEPLPGDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 224 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ID I LR+KL ++I TV+G GY E Sbjct: 225 DYRVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWEAAVSQE 272 >gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ AH + L + + V + G G+ L + +++D I+LD+ L + GF Sbjct: 1 MKLLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR TPV +L+ ++D+V GL GADDY+ KPF+ EL+AR++A+VRR R Sbjct: 61 NVLRELR-RSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL VNL A+ G R+ LTGKE+ ++ LL+ R+ L+K + ++D Sbjct: 120 QQEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + +++V I +LR KL + + TV G GYVL ++ Sbjct: 180 INFDSNTNVVEVAIKRLRSKL-DGPYPSKLLHTVRGMGYVLEVRDDED 226 >gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + +L+ F + + I D ++LD L G + Sbjct: 4 KVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + + + + P+ +L+ EDKVRGL+ GADDY++KPF+ +EL+ARI+A++RR Sbjct: 64 IAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V G + + E++++ ++E L+ + Sbjct: 124 SPTSLEEAIDVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHTERVYSREQLLDQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK +S G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAISPL-GHDRLVQTVRGAGYRF 225 >gi|119715846|ref|YP_922811.1| two component transcriptional regulator [Nocardioides sp. JS614] gi|119536507|gb|ABL81124.1| two component transcriptional regulator, winged helix family [Nocardioides sp. JS614] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK LA ++ L+SE V V G DG +DA+++D+ L + G Sbjct: 1 MRILVVEDDKQLAAALRRGLESEGHAVDVALTGTDGEWYASENTYDAMVVDVMLPGLTGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R + TP+ +L+ S E + R L +GADD++SKPF+ L AR+RA++RR Sbjct: 61 ALCARRRESGDWTPILMLTARSGPEQEARALDAGADDFLSKPFSFMVLTARLRALLRRDS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ V I LT K++ ++E + + L+K M L H++D Sbjct: 121 RERPTVLEVGDLRLDPALHRVWRGDTSIDLTPKQFSLLEFMMRHADHILSKSMILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I++V++ +LR+++ + ++ ++TV GY + ++ Sbjct: 181 FSYDGHPNIVEVYVRQLRQRI-DEPFQRSSLQTVRLVGYRVVDD 223 >gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A I L L+S+ + VY GE+ +E K + D ILD+ L I GF Sbjct: 1 MNILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R + + PV +L+ + DK+ GL GADDYI KPFN EL+AR++A +RR Sbjct: 61 EILKKIR-ERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYT 119 Query: 121 GHAQSLIVTGDLSVN-------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++ ++ ++ LT E+ ++ +L + ++ E Sbjct: 120 QYNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEE 179 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I LR+K+S G ++I+TVWG GY + E Sbjct: 180 LFENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 230 >gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++++A + L+ +F V V + GE G +FD IILDL L + GFE Sbjct: 4 KILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQVRDQKNT-PIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + ++ ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 QEIWDMESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRFK 229 >gi|317508033|ref|ZP_07965722.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253672|gb|EFV13053.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++L+ E F+ V G + + D ++LD+ L + G + Sbjct: 7 RILVVDDDVALAEMLTIVLRGEGFDPVVVSDGSKVLPAVRELRPDLVLLDVMLPGLNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRQVRAESGV-PIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D+ +++ A V I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRADQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224 >gi|298486538|ref|ZP_07004598.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159015|gb|EFI00076.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 230 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R + PV +LS +S KV+ L +GA+DY++KPF +E +ARIRA++R+ G Sbjct: 67 LSEFR-EWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+V+L + V + GH + LT KEY ++ L+ +T++ L ++ Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + LR+KL++ +I T G GY L Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 11/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + + ++L +E + V D G + I C+ D IILD+ + + GF+ Sbjct: 5 VLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ--DLIILDIMMPGMDGFKT 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ L+ + +DK G SG DDY+ KPF+ EL++R+ A++RR + Sbjct: 63 CRRIR-ELTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVY 121 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++I DL V+ ++ V V ++LT EY++++LL + + Sbjct: 122 RGKSNIEESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELY 181 Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D I V I LRKKL YI T+WG+GY Sbjct: 182 ESIWDESYLYTANNTIMVHIRNLRKKLLVDPSNPKYIRTIWGKGYRF 228 >gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 226 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L SI L+ + + V + D G +E+ + ++D I+LDL L I G Sbjct: 1 MKILVVEDEKELLASIGEGLELDGYYVDLVDNGTQALEMAQLEQYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR T V ILS SS+ D++ GL +GADDY+ KPF EL ARIR ++RR Sbjct: 61 DLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRREY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H ++ + G+L + A+ V V +++LT KE ++E L ++ E + H +D Sbjct: 121 IHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + V I +RKKL A G + I G GY ++++ D Sbjct: 181 SNVDLFSNSVRVHIFSIRKKLREALGY-DPISNKVGEGYCFKKDSDD 226 >gi|255527459|ref|ZP_05394330.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186052|ref|ZP_06854457.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508839|gb|EET85208.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049320|gb|EFG88749.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I +L+++ +NV G + + + ++ I+LDL + I G E Sbjct: 6 KILVVEDENDINKLICSILENKGYNVIPAFSGTEALMRVENEKWHMILLDLMIPGIDGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ +R P+ ++S +S + K+ L+ GADD+I KPF+ +E+VAR+++ +RR Sbjct: 66 VILKIR-EITKAPIIVVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVKSNLRRYLE 124 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++V D+S+N+++K V+V I LT +E+ ++ELL + +K Sbjct: 125 FSTGGEKKNNILVYKDISLNIESKEVKVGQTLITLTAREFDILELLLKNPSKVYSKSNIF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ E I+V + +LR KL NA GK+YIETVWG GY LR+ Sbjct: 185 ESIWEEEFLGEYNTINVHVSRLRTKLCNAGDGKDYIETVWGMGYRLRK 232 >gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 9] Length = 241 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 226 >gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10] gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10] Length = 225 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+K ++ I L++ENF+V G + + F ILD+ L DI GF+ Sbjct: 3 KILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K P+ +L+ S DK+ GL GADDYI+KPF E++AR++A +RRS Sbjct: 63 LCKIIR-KKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S +L ++++ + +Q + LT E+ +++LL RK ++ E + Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181 Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I V + LR+K+ + +YI+TVWG GY + Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225 >gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC 25296] gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC 25296] Length = 247 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D++ L + + LK + V G + + + + D ++LD+ + G Sbjct: 23 IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE--ELVARIRAIVRR 118 E+L +R P L+ S+++++ GL +GADDY++KPF+ E + Sbjct: 83 ELLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 142 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V GDL +N D + V G +I+LT ++ ++ L ++K L+++ Sbjct: 143 VAAIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNV 202 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++++I LRKK+ G + I TV G GYVLR Sbjct: 203 WNYDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVLRP 245 >gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21] gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21] Length = 224 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P I+DV++ +LRKK+ + + I+T G GY L + Sbjct: 181 GIHQDPLTNIVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYLGD 223 >gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 268 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 245 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + +I L++E F V G ++ + ++ D ++LD+ L G E Sbjct: 20 RVLVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R + A+ PV +L+ D + GL GADDY++KPF+ EL AR+ ++RR Sbjct: 80 VCRRV-QAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G+L ++ + V V+G +HLT E+ ++ L+ L++E Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRGDDVHLTPTEFDLLVCLANTPRAVLSREQL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+K+ I TV G GY L A Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGA-----ERIRTVHGVGYALETPAP 245 >gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA 2018] Length = 231 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + I+++EDD + + +++ML+ + +NV G + + K EF ++LDL L I G Sbjct: 5 INIIVVEDDNDINNMLKIMLERKGYNVVQAYSGTEALLHVKTQEFQLMLLDLMLPGISGD 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R + PV ++S S + KVR L+ GADDYI+KPF+ +++ ARI + +RR Sbjct: 65 ELLQKVRG-ISAMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYI 123 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S IV D+ ++ A V V G R+ LT +E++++E+L L K +K Sbjct: 124 KFGKDESFNSKIVFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++V I LR KL A + YIETVWG GY L+ Sbjct: 184 ESVWEDTYMGDDNTLNVHISNLRNKLLKANSKEEYIETVWGMGYRLK 230 >gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 EDL933] gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS) [Escherichia coli O157:H7 str. EDL933] Length = 240 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + G+ + + D I+LDL L G Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L ++ +G + LT E+++++ LS ++E LNHLY Sbjct: 131 QRELQQQDAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +++I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 >gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816] gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220] gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes str. Scott A] Length = 228 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ IE+ E + G+ G E E+D I+DL L ++ G Sbjct: 1 MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 TICRKIR-EVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ + + QG + LT KE+ ++ L ++E Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I +LR+K+ A K ++ TVWG GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDE 226 >gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 17/240 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA + L + V + GE+ + K E+D ++LD+ L + G Sbjct: 1 MRILVVEDDVQLAEMLMEALTDRQYVVDIAQDGEEAWDCIKVLEYDLVVLDITLPKLDGV 60 Query: 61 EVLRALRV----------------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 + LR I+ PV +L+ ++ DK+ GL +GADDY+ KPF Sbjct: 61 SFCQRLRSPMVGRSPSPTSRHTLSRNIAIPVLMLTARDTLGDKITGLDAGADDYMVKPFE 120 Query: 105 KEELVARIRAI-VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 EL+AR+RA+ R S + S G L +N V +HLT KE+ ++EL+ Sbjct: 121 MPELMARVRALLRRNSAATSSSDFGWGSLRLNSSTYEVTYADQPLHLTPKEFALLELMVS 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L++ + ++ D P + + I LR KL + ++IETV G GY L++ Sbjct: 181 SGRRVLSRAGIIERIWSLDDPPSEETVKSHIKSLRYKLKDVGAADDFIETVHGLGYRLKQ 240 >gi|325568587|ref|ZP_08144880.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325157625|gb|EGC69781.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 261 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59 +ILL+ED+++LA I+ L E + G++ + L + FD I+LD L G Sbjct: 30 KILLVEDEESLASFIQSELTFEGYGTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYDG 89 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R P+ +++ + D V GL G DDY++KPF EEL ARIR I RR Sbjct: 90 ITVARRIRKESDI-PILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 148 Query: 120 RGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A+ G+L +++ V+V G I LT KE+ ++ L T++ Sbjct: 149 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 208 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 LN ++ + + ++DV+I LR KL + G I TV G GYVLR + ++ Sbjct: 209 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLRTDHEE 261 >gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103] gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103] Length = 245 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ ++ + + I D I+LD L G + Sbjct: 20 RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGSGIQ 79 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 80 FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRI 139 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + EY+++ ++E LNH+ Sbjct: 140 SPMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 199 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 200 WGTNVYVEDRTVDVHIRRLRKALE-LTGHDRMVQTVRGTGYRF 241 >gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074] gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074] gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 16/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAGALSAILSRHGFQVTHARSGEEALKALLPAGGPPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV +R PV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGYEVCGKIRARTSV-PVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVAR 119 Query: 118 RSRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R++ A +V G + V L + V V G + LT KE+ ++ LL R Sbjct: 120 RNQPGDAEGAATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++ ++ E + ++V + LR KL IETV G GY L + Sbjct: 180 RREQIISEVWRTSWEGTGRTLEVHVASLRSKLRR----PALIETVRGVGYRLVDPG 231 >gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] Length = 255 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 33 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 92 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 93 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 152 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 153 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 212 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LR K+ N + I TV G GY Sbjct: 213 WGPDIYVDDRTVDVHVGRLR-KVINVGRAADSIRTVRGAGYSF 254 >gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 232 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++A+ +++ LK + V GE+ + + D ++D GL D+ G E Sbjct: 5 KILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPDMEGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV +L+ + EDK+ L +GADDY+ KPF EL+ARIR +R + Sbjct: 65 VLRRLR-EWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAAR 123 Query: 122 HAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +++L + VE+ G + LT EY +++ L+ +T+ L H++ Sbjct: 124 VQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVWG 183 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + V+I LRKKL + I T G GY L + Sbjct: 184 DVDPDNAAHYLRVYIGHLRKKLEDDPSRPWRIVTEPGVGYRLAVEPPE 231 >gi|288906147|ref|YP_003431369.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus UCN34] gi|306832192|ref|ZP_07465346.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732873|emb|CBI14452.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus UCN34] gi|304425631|gb|EFM28749.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 225 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + + LK+ F E + + + D I+LD+ L G + Sbjct: 2 IYCVEDDDDIRELMLYTLKTTGFVAQGFPNAELFWQAIESQKPDLILLDIMLPGSDGLSI 61 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L +++ PV + + + DKV+GL G+DDY+ KPF E+++RI+A+ R Sbjct: 62 LEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRSQ 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++ G+LS+++ TV+ G I LT KE++++ LL N T++ LN ++ Sbjct: 122 KSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I LR KL +A+ + I+T+ G GY L E Sbjct: 182 GEYFVGETRTVDVHIGTLRTKLGDAS---HLIKTIRGVGYRLEEE 223 >gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 224 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD AL ++ +L EN+ V G++G+ L + D ++LD+ L +I G Sbjct: 1 MRILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 E+++ +R + P+ +L+ S+ D+V GL++GADDY++KPF EL+ARI+A + R Sbjct: 61 EIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRSG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G + ++ + V+G + LT KEY+++E L L K LT+E + ++ Sbjct: 121 NLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIFDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ++D++I LRKKL + N I+T+ G G++L+E Sbjct: 181 GFASETTISVVDLYIHYLRKKL-ASFDRDNLIQTIRGAGFMLKE 223 >gi|15900511|ref|NP_345115.1| DNA-binding response regulator VncR [Streptococcus pneumoniae TIGR4] gi|15902572|ref|NP_358122.1| VncR, response regulator [Streptococcus pneumoniae R6] gi|111657296|ref|ZP_01408060.1| hypothetical protein SpneT_02001494 [Streptococcus pneumoniae TIGR4] gi|116516514|ref|YP_816026.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39] gi|148983983|ref|ZP_01817302.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP3-BS71] gi|148988968|ref|ZP_01820368.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP6-BS73] gi|148992289|ref|ZP_01822012.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP9-BS68] gi|149002281|ref|ZP_01827223.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS69] gi|149005712|ref|ZP_01829451.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP18-BS74] gi|168482836|ref|ZP_02707788.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00] gi|168488288|ref|ZP_02712487.1| VncR, response regulator [Streptococcus pneumoniae SP195] gi|168490511|ref|ZP_02714654.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04] gi|168492763|ref|ZP_02716906.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06] gi|169833674|ref|YP_001694082.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6] gi|182683534|ref|YP_001835281.1| DNA-binding response regulator VncR [Streptococcus pneumoniae CGSP14] gi|221231426|ref|YP_002510578.1| two-component system, response regulator [Streptococcus pneumoniae ATCC 700669] gi|225854136|ref|YP_002735648.1| VncR, response regulator [Streptococcus pneumoniae JJA] gi|225856303|ref|YP_002737814.1| VncR, response regulator [Streptococcus pneumoniae P1031] gi|225858438|ref|YP_002739948.1| VncR, response regulator [Streptococcus pneumoniae 70585] gi|237650128|ref|ZP_04524380.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821659|ref|ZP_04597504.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|303253928|ref|ZP_07340049.1| two-component system, response regulator [Streptococcus pneumoniae BS455] gi|303260094|ref|ZP_07346067.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP-BS293] gi|303261278|ref|ZP_07347226.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS292] gi|303263943|ref|ZP_07349864.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS397] gi|303265934|ref|ZP_07351830.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS457] gi|303268316|ref|ZP_07354113.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS458] gi|4583523|gb|AAD25108.1|AF140356_1 VncR [Streptococcus pneumoniae] gi|5830544|emb|CAB54582.1| response regulator [Streptococcus pneumoniae] gi|14972078|gb|AAK74755.1| DNA-binding response regulator VncR [Streptococcus pneumoniae TIGR4] gi|15458102|gb|AAK99332.1| VncR, response regulator [Streptococcus pneumoniae R6] gi|116077090|gb|ABJ54810.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39] gi|147759596|gb|EDK66587.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS69] gi|147762652|gb|EDK69612.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP18-BS74] gi|147924130|gb|EDK75242.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP3-BS71] gi|147925465|gb|EDK76542.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP6-BS73] gi|147928915|gb|EDK79927.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP9-BS68] gi|168996176|gb|ACA36788.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6] gi|172043603|gb|EDT51649.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00] gi|182628868|gb|ACB89816.1| DNA-binding response regulator VncR [Streptococcus pneumoniae CGSP14] gi|183572926|gb|EDT93454.1| VncR, response regulator [Streptococcus pneumoniae SP195] gi|183574934|gb|EDT95462.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04] gi|183577048|gb|EDT97576.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06] gi|220673886|emb|CAR68392.1| two-component system, response regulator [Streptococcus pneumoniae ATCC 700669] gi|225720424|gb|ACO16278.1| VncR, response regulator [Streptococcus pneumoniae 70585] gi|225723575|gb|ACO19428.1| VncR, response regulator [Streptococcus pneumoniae JJA] gi|225725840|gb|ACO21692.1| VncR, response regulator [Streptococcus pneumoniae P1031] gi|301799650|emb|CBW32209.1| two-component system, response regulator [Streptococcus pneumoniae OXC141] gi|301801472|emb|CBW34164.1| two-component system, response regulator [Streptococcus pneumoniae INV200] gi|302599104|gb|EFL66129.1| two-component system, response regulator [Streptococcus pneumoniae BS455] gi|302637412|gb|EFL67899.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS292] gi|302638789|gb|EFL69251.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP-BS293] gi|302642154|gb|EFL72504.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS458] gi|302644518|gb|EFL74769.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS457] gi|302646348|gb|EFL76574.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS397] gi|332074410|gb|EGI84886.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076436|gb|EGI86899.1| response regulator [Streptococcus pneumoniae GA41301] gi|332077033|gb|EGI87495.1| response regulator [Streptococcus pneumoniae GA17545] gi|332202480|gb|EGJ16549.1| response regulator [Streptococcus pneumoniae GA41317] gi|332203763|gb|EGJ17830.1| response regulator [Streptococcus pneumoniae GA47368] Length = 218 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYKDTKV-DFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602] gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 233 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE +E D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKI-DNTIDLLLLDVMMPKKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRA++RRS Sbjct: 62 TLKELR-QRHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLRRSNW 120 Query: 122 HAQSLIVTGDLSV---------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q + S N + G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQTNENNGSPTLEVDGLQLNPGRQEASFNGEALDLTGTEFTLLYLLAKHLGQVVSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRQDGHPWFKTLRGRGYLMV 230 >gi|302338615|ref|YP_003803821.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301635800|gb|ADK81227.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 227 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ ++ + + V+V G D ++ + + D I+LDL + + G+E Sbjct: 4 ILVVEDDENTRKLMKTIFLLNGYKVFVAKDGIDALDKIQDHHIDLIVLDLMMPRMDGYEF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR A + P+ +++ + DK +G G DDY+ KP ++EE++ R++A++RRSR Sbjct: 64 TTTLRKANNNVPILMVTAKEAPADKKKGFLVGTDDYMVKPVDEEEMLLRVKALLRRSRIV 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G ++ D+ TV +G I L KE+ ++ L N T+ ++ L+D Sbjct: 124 NEHRLTIGGTELDYDSFTVFREGTGIELPNKEFMLLYKLLSYPNKIFTRRSLMDELWDIN 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E +++ +DV I +LR + + I TV G GY Sbjct: 184 SESDIRTVDVHINRLRDRFKDNPDFG--IVTVRGLGYK 219 >gi|269793520|ref|YP_003312975.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095705|gb|ACZ20141.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 125/220 (56%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ + ++ L +E F V V G G++L + +DAI+LD+ L + G+ Sbjct: 1 MRILVVDDEVVMTRALRRGLGAEGFAVDVAHDGRTGLDLARDGAYDAIVLDIMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++ TPV +LS D GL GADDY++KPF LVAR+RA++RR Sbjct: 61 DVLQTLRAEEVWTPVLLLSAKDGDHDVADGLDVGADDYLTKPFAFVVLVARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GD++++ + V ++G + T +E+ ++E L R + K +H++D Sbjct: 121 VPRPVVLTVGDVALDPASHVVTLRGEPVATTAREFALLEYLLRRPGQVVGKVELRDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 G E ++ +++V++ LR+KL + TV G GY Sbjct: 181 GDGE-DLNVVEVYVGYLRRKLGRD-----VVATVRGAGYR 214 >gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIED L I L E + V G G+E+ Y+FD I+LD+ L + G + Sbjct: 5 KVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + +L+ + S E+ V GL+SGADDY+ KPF EELVAR+R ++RRS Sbjct: 65 VCKEIRKRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSK 124 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +N+ +KTV G ++LT EY+++E L N L++ L +++ Sbjct: 125 QAAVTDRISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D ++DV+I LRKK+ + G I TV+G GY+L+E Sbjct: 185 DIDFNLGTNVVDVYINYLRKKI-DNVNGGRLIHTVFGMGYILKE 227 >gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] Length = 239 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+K + + L + + V G++ +E +D I+LDL L + G E Sbjct: 15 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 75 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFV 134 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G++ + + + + LT KE ++E L + +++E + H++D Sbjct: 135 QNDICLKCGEIKFDTIKRKAYAKEEPVLLTRKENGILEYLLINIGRPVSQEELIEHVWDA 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LRKKL G + I+ G GY +RE + Sbjct: 195 TADSFSGAIRVHMSSLRKKLKAKLGY-DPIQNKVGEGYKIREES 237 >gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes] Length = 228 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ RIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|182434880|ref|YP_001822599.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463396|dbj|BAG17916.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 249 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 6/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +++ EDD+ A + L+ E V V G ++ + E D ++LD+ + G +V Sbjct: 14 VMVAEDDEKQAELVRRYLEREGHAVRVVGDGLAALDAVRHREPDLLVLDVMMPRADGLDV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R LR PV +L+ S+ +D + GL GADDY++KP++ EL+AR+R ++RR+R Sbjct: 74 VRVLRSEHRELPVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRRA 133 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A G L V+ V V G + T E++++ L+ + +++ L Sbjct: 134 ATEPAAADPVLRVGALVVDPARHEVSVDGATVECTPGEFRILAALAAGPDRVFSRQRLLE 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + +DV + LRKK+ A + TV+G GY L + AK Sbjct: 194 ELHGFDRYISARTVDVHVMNLRKKIERAPRRPERLLTVFGVGYKLTDPAK 243 >gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 236 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D+ ++ I + L+ + + + E+ + D I++D + G E Sbjct: 10 KVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMPGGSGIE 69 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R L+ + PV +L+ S ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 70 LTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I L+++ ++ V + + + EY++++ L + ++ L+ + Sbjct: 130 TPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYSRAQLLDQV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + +DV I +LRK + + I+TV G GY Sbjct: 190 WGGNVYVEERTVDVHIRRLRKAIG--STHDFLIQTVRGTGYRF 230 >gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 2250] gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae FF5] gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae 642] gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. B076] gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. race 4] gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. mori str. 301020] gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. pisi str. 1704B] gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae Cit 7] gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + + + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L +A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225 >gi|300697830|ref|YP_003748491.1| OmpR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074554|emb|CBJ54105.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum CFBP2957] Length = 245 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 6/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + F V V G+ + ++LDL + + G Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 LR LR PV +L+ S D++ GL+ GADDY+ KPF+ EL+ARI A++RR + Sbjct: 65 ALRDLRARNDDMPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N +T+ + ++ E+ +++LL LT+E + Sbjct: 125 VAPAAPEDRDSFGFGPFKLNFRMRTLFRGDRALAISDTEFALLKLLVTHAMQVLTREHIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +Y + IDV I +LR+ L A YI+TV GRGY + +D E Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLEEDAQRPRYIQTVRGRGYTFVPDERDAHDE 240 >gi|326790349|ref|YP_004308170.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541113|gb|ADZ82972.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++DD + + +L+ E + V+ + G + I+ +ILD+ + + G Sbjct: 4 INILVVDDDLQIMEVLCKLLELEGYKVHSSFNGFEAIDYINNNSIQLVILDVMMPHLNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R K + P+ +LS + DKV GL GADDYI KPFN EL+AR++A +RR Sbjct: 64 TALLKIR-EKHNVPIIMLSAKTEETDKVCGLSLGADDYIEKPFNTAELLARVKAQLRRYM 122 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 LI GDL +N K + V LT EY+++ELL N + Sbjct: 123 LLGASIENAAQTHDLIEVGDLVLNQATKEILVCDIPYALTATEYKILELLMKHPNQVFSA 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++ + V I ++R+K+ Y++ VWG GY + Sbjct: 183 EQIYENVWQETVYAVENTVMVHIRRIREKIEMNPKEPKYLKVVWGIGYKIE 233 >gi|293395322|ref|ZP_06639606.1| two component response regulator IrlR [Serratia odorifera DSM 4582] gi|291422006|gb|EFE95251.1| two component response regulator IrlR [Serratia odorifera DSM 4582] Length = 225 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + ++ L+ + V + G DG+ + +DAI+LD+ L + G+ Sbjct: 3 MRILVVEDDTSTGDYLKKGLEEAGYRVDLARNGTDGLFRALEHGYDAIVLDVMLPGLDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR P+ L+ ++D++ GL+ GADDY+ KPF+ ELV R+R ++RR Sbjct: 63 QIIEVLRKKSDV-PILFLTARDGVQDRIHGLELGADDYLIKPFSFTELVLRLRTLLRRGT 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL +++ + V Q I LT KE+ ++ LL R+ L++ M + ++D Sbjct: 122 VREADHYAIADLHIDVLRRKVVRQEQTITLTNKEFMLLHLLVRREGEVLSRTMIASQVWD 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LR K+ + I TV G GYV A Sbjct: 182 MNFDSDTNVVDVAIKRLRAKI-DRPFAVKLIHTVRGIGYVCEPRA 225 >gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] Length = 219 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L I L+ + ++ G D + E+D I+LDLGL + G Sbjct: 1 MKILVVEDDPRLGEQIVETLEKTGWVPELSQDGIDALYRATSEEWDVIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL ARIRA +RR+ Sbjct: 61 TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A ++ G+LS++ V QG I LT EY+++ +++ + H+Y Sbjct: 121 GNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VFI ++RKK++ I+TV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQLNAE 219 >gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 222 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+++D+K LA + L+ + V +T G ++ + +E D ++LDLGL + G EV Sbjct: 2 LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGMDGIEVC 61 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122 R +R A V +L+ ++ GL GADDYI+KPF+ ELVAR+ A++RR R Sbjct: 62 RRVR-AFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTTV 120 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + V GDL ++L A V G + LT E+ ++ LS R + ++ ++ ++D Sbjct: 121 SAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++DV I LR+KL YI+TV G GY + E Sbjct: 181 PAWVGDERLVDVHIKNLRRKLDADPA--RYIDTVRGVGYRMAEQ 222 >gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 509 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++DD+ + + +L +N+ V V GE EL + +++D I+LD+ L + G Sbjct: 1 MRILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR K V +L+ + DK++GL GADDY+ KPFN +EL AR+ A+ RR Sbjct: 61 SFCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V G L ++ + V Q H + L+ KEY ++EL + + ++ L+ Sbjct: 121 SSPYPTLVCGHLHLDPNLHEVNYQEHLLQLSRKEYLLVELFLRNQKRIYSCRDIIDELWA 180 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E P + I +R+ L N++ETV+G+GY + Sbjct: 181 FDAEPPNEWTVRSHITNIRRNLKAVGAD-NFLETVYGQGYRINP 223 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 7/107 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L ++DD + +++ +L+ + + E + + + +ILD+ + G E Sbjct: 376 KVLAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMP--SGTE 433 Query: 62 VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 L R P+ LS + +E + GADDY++KP Sbjct: 434 GLDLCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKPI 480 >gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 230 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD+A+A + L E ++V V G D + EF +ILDLGL ++ G E Sbjct: 4 RVLLAEDDEAIASPLARALTREGYDVTVAATGTDAVRRALDEEFALLILDLGLPELDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ V +L+ + D V GL +GADDY+ KPF EL+AR RA++RRS Sbjct: 64 VCREVRAARPEVAVLMLTARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLRRSAP 123 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G + ++ A+ V V G + L KE++++ L R L++E L ++ Sbjct: 124 APDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFELLRFLMERAGQLLSREDILADVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA--AGGKNYIETVWGRGYVL 221 D K +D+ I LR+K+ + G I TV G G+ Sbjct: 184 GDSDLRGSKTLDMHISWLRRKIGDDTGPHGPRRIVTVRGVGFRF 227 >gi|297569293|ref|YP_003690637.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925208|gb|ADH86018.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 233 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L I+DD+ + ++ L+ F + + ++ + + D IILDL L D G E Sbjct: 10 LLAIDDDQDILKVLKANLELHGFKLVTATSLTEARQVLESLQPDLIILDLMLPDGDGLEF 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 +L+ P+ +L+ + DKV GL+ GADDY+ KPF EL+ARI+A +R S G Sbjct: 70 CCSLKSIHPQLPIIMLTARDKVSDKVVGLELGADDYVVKPFETSELLARIKARLRSSPGG 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I G+L V+L +TV V G I+LT KE+Q++ L +N +T++ L+ Sbjct: 130 APNPVIRAGELEVDLRNQTVSVNGQEIYLTAKEFQLLACLVENRNNLVTRDEIRKRLWRD 189 Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++IDV I LR+K+ +I TV GRGY E Sbjct: 190 SKIYSWSRVIDVHIQHLRQKIEKTPSRPRFIITVPGRGYRFAEE 233 >gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 236 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++EDD ++A +++ E ++V + G + +E+ K +D + LDL L G Sbjct: 3 KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R IS P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ RRS Sbjct: 63 IEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122 Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170 G L ++ D + V + LT KE+ ++ ++ ++ + Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQKQVFS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +D I KLR+KL A G ++TVWG GY ++ Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDSE 235 >gi|254476121|ref|ZP_05089507.1| DNA-binding response regulator ChvI [Ruegeria sp. R11] gi|214030364|gb|EEB71199.1| DNA-binding response regulator ChvI [Ruegeria sp. R11] Length = 233 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I L++DD+ + S+ + L++E F V + G+ ++ D +LD+ + + G + Sbjct: 3 KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQAALDAFNKKLPDMAVLDIKMPRMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L+ LR K PV L+ D+V GL+ GADDY+ KPF++ LV RIRA++RR Sbjct: 63 LLQRLR-QKTQMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ G+L ++ +V +G + LT E+ +++ L+ R +++ Sbjct: 122 ISGDAVATTTESKVMERGNLRMDPLRHSVSWKGQDVSLTVTEFLLLQALAQRPGFVKSRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ YD + + + ID I +LRKK+ +A IET++G GY E Sbjct: 182 QLMDVAYDDQVYVDDRTIDSHIKRLRKKMRSADPEFAAIETLYGIGYRYNEE 233 >gi|144900012|emb|CAM76876.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 234 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + V G + + D +LD+ + + G E+ Sbjct: 5 IALVDDDRNILTSVSMALEAEGYKVRTYSDGAEALRGLTSQPVDLAVLDIKMPRMDGMEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR PV L+ D++ GL+ GADDYI KPF+++ L+ RIRA++RR + Sbjct: 65 LQRLRKQSAI-PVIFLTSKDDEIDELLGLRMGADDYIKKPFSQKLLIERIRALLRRLDAN 123 Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + IV G L ++ G ++ LT E+ +++ L+ R ++ Sbjct: 124 AEGGDTSAANAAIVRGPLVLDPGRHICTWSGKQVDLTVTEFLILKSLASRPGHVKNRDQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ Y + + ID I +LRKK + IET++G GY R+ A Sbjct: 184 IDAAYGESIYVDDRTIDSHIKRLRKKFRDIDDDFAQIETLYGVGYRYRDEA 234 >gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] Length = 228 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++ED+ A + L++E F V + G++G+ + D I+LD + ++ G E Sbjct: 6 HVLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIE 65 Query: 62 VLRA--LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 V R ++ S P+ +LS S DKVRGL++GADDY+ KP++ EL+AR+R R Sbjct: 66 VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ D+ ++ + V + + L E++++ + +++M L+ + Sbjct: 126 RPATVGQVLTYEDIVLDAETYRVTRDDNPLKLGPTEFRLLSTFMEKPGRVWSRDMLLDRV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LRK L+ G + + TV G GY L Sbjct: 186 WGRDIYVDTRTVDVHVGRLRKVLTQHGGS-DPVRTVRGAGYAL 227 >gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 220 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 125/220 (56%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + +E L+ E + + + G G EL + + FD I+LD L I G Sbjct: 1 MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +A+R+ TP+ L+ ++++ + GL++GA+DYI KPF+ EELV R++ R Sbjct: 61 DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFRN-- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+++V+L V I+LT +E++++ L +K T+ L ++D Sbjct: 119 KATDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + +IDVF+ +RKKL N ++YI+T+ G GY+ Sbjct: 179 INFEYDTGVIDVFMNAIRKKL-NLKIEEDYIKTIRGIGYI 217 >gi|159184131|ref|NP_353073.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139468|gb|AAK85858.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 241 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 17/239 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + V G ++ I D+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 LR LR K PV L+ D++ GL+ GADD+I+KPF++ LV R++AI+R Sbjct: 64 LRRLR-QKSDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRASSR 122 Query: 118 -----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 + + G L+++ + T +G + LT E+ ++ L+ R Sbjct: 123 EASAATGGTLKPTADQQARTLERGQLAMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPG 182 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ ++ YD + + + ID I +LRKK G + IET++G GY RE A Sbjct: 183 VVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKLVDGDFDMIETLYGVGYRFREAA 241 >gi|296394611|ref|YP_003659495.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181758|gb|ADG98664.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++L+ E F+ V G + + D ++LD+ L + G + Sbjct: 7 RILVVDDDVALAEMLTIVLRGEGFDPVVVSDGTKVLPAVRELRPDLVLLDVMLPGLNGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ + D V GL+SGADDY+ KPF +ELVAR+RA +RR+ Sbjct: 67 VCRQVRAESGV-PIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D+ +++ A V I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRGDQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224 >gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 233 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 RIL+++DD+A+A+ I L+ E F + + G + +E + E +ILD+ + + G Sbjct: 3 RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +S S D + GL+ GADDYI KPF EELVAR++A +RR + Sbjct: 63 ELCRRVRDQ-LKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121 Query: 121 GHAQSLI-------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H + I + + V I L+ +E+Q+ + L++E Sbjct: 122 RHQMNAIESLQDVLPFDHFKLYPNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++ ++ + V I LR+KL YI+T+WG GY L + + Sbjct: 182 IFDAIWGENY-GDIGTVAVNIKNLRQKLDPDN---QYIKTIWGVGYKLVKPEGE 231 >gi|121534557|ref|ZP_01666379.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306809|gb|EAX47729.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L I+ ML+ E V G +E + +D +ILD + + G Sbjct: 1 MRILLAEDDSRLGKLIKHMLEKEKMQVDWVTEGNAALEYALYSPYDVVILDWMMPGLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EV LR + + +L+ +++DKV GL +GADDY+ KPF EL+ARIRA R + Sbjct: 61 EVCDRLRKRRYQGAILMLTARDAVDDKVLGLDTGADDYLVKPFEFSELMARIRALSRRSA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL +N + V I LTG+E+QM++LL + + +E+ L+ ++ Sbjct: 121 VVLKEDIVQVGDLVLNRTTRVVRRGDREIQLTGREFQMLDLLVQNRGKVVPREVILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +D ++ LRKK+ + G + I + G GY L E Sbjct: 181 GLESEVSSNNLDAYVRLLRKKI-DFPGEEKLIHNIRGIGYKLGE 223 >gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52] gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395] gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587] gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33] gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2] gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33] gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9] gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51] gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27] gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52] gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587] gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51] gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33] gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395] gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2] gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395] gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9] gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33] gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27] gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ +LRKK+ + + I+T G GY L + Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYLGD 223 >gi|254510216|ref|ZP_05122283.1| two component transcriptional regulator, winged helix family [Rhodobacteraceae bacterium KLH11] gi|221533927|gb|EEE36915.1| two component transcriptional regulator, winged helix family [Rhodobacteraceae bacterium KLH11] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ L E+F+V+ G+ +E + +D +ILD+GL D G Sbjct: 6 KILLVDDDEDLREALSEQLVMTEDFDVFEASDGQSAMERAREAIYDLVILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + +PV +L+G S D + GL +GA+DY+SKPF L+ARIRA +R+ Sbjct: 66 ELCRLMRKQGVKSPVLMLTGHDSDADTILGLDAGANDYVSKPFKFPVLLARIRAQLRQHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ V G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 126 QSEDAVFVLGPYTFKPAMKMLMTEDDRKIRLTEKETNILKFLYRSTDGVVARDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 227 >gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + + G+ + + D I+LDL L G Sbjct: 12 RILIVEDEPKLGQLLVDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L ++ G + LT E+++++ LSL ++E LNHLY Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +++I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 >gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 120/226 (53%), Gaps = 2/226 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ + + L+ + ++V + + G++ +E K ++ II D+ + ++ G++ Sbjct: 4 KILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMDGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ P ++ ++ DK+ L GADDYI KPF+ ELV R++ I+RR Sbjct: 64 LISEVQYLDEEQPFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNILRRIEK 123 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I T GDL +N ++ V ++ LT K ++++ LL+ + +K ++ Sbjct: 124 NSSENISTLGDLEINYSSRIAMVNDRQLELTVKSFELLWLLANNPDRVFSKTELYEKIWQ 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENA 225 + ++V I LR+ L+ + K ++TVWG GY + + Sbjct: 184 DEYVEDANTLNVHIHSLRRILTKYSTKKTPSVKTVWGLGYKMEKQV 229 >gi|196032666|ref|ZP_03100080.1| DNA-binding response regulator [Bacillus cereus W] gi|218903983|ref|YP_002451817.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228927912|ref|ZP_04090957.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934132|ref|ZP_04096971.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946472|ref|ZP_04108790.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122407|ref|ZP_04251620.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|254722832|ref|ZP_05184620.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|195995417|gb|EDX59371.1| DNA-binding response regulator [Bacillus cereus W] gi|218539029|gb|ACK91427.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228660968|gb|EEL16595.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228813220|gb|EEM59523.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825300|gb|EEM71094.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831602|gb|EEM77194.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 215 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D++ + ++ + E F V++ GE+ +++ + D ILD + G Sbjct: 1 MKVLIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWMMPKHSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 61 TVCQEIKKNSSVK-VLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL ++ V + +T E ++I+ K LT++ L+ ++ Sbjct: 115 IQHDDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D + +LRKK+ I+T G GY L E ++ Sbjct: 175 FDYFGEERTVDTHVRRLRKKIGEN-----IIKTHRGLGYSLEEQSE 215 >gi|160942867|ref|ZP_02090106.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii M21/2] gi|158445768|gb|EDP22771.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii M21/2] gi|295103953|emb|CBL01497.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 234 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 R+L++ED+ + I L L+ V + E + L DA ILD+ L + GF Sbjct: 3 RVLVVEDEANIRDMIALNLRHAGMEVVEAESAEAALPLLAQKPGCDAAILDVMLPGMNGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + ILS +DK+RGL GADDY++KPF+ EL+AR+ A+ RR Sbjct: 63 SLCETIRRTDQQIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRVI 122 Query: 121 GHAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +G+ ++ + + + G I LT E+Q++EL T L + Sbjct: 123 RTKEEDSNGNTPLGTLTSGEFVLDENRRVLLKAGQPIELTQVEFQIMELFFRNPGTALVR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E L ++ +VKI+DV I +LR K+ + +I TVWG GY E Sbjct: 183 EKILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPTHIMTVWGYGYRWEE 234 >gi|315037993|ref|YP_004031561.1| Response regulator [Lactobacillus amylovorus GRL 1112] gi|312276126|gb|ADQ58766.1| Response regulator [Lactobacillus amylovorus GRL 1112] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 115/236 (48%), Gaps = 15/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 +IL++EDD ++A + + K E + + G + +++ K ++D I LDL L G Sbjct: 4 KILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 64 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123 Query: 120 RG----------HAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTT 168 I T L ++ + V + LT KE+ ++ ++ + Sbjct: 124 MMEEKPALLQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQV 183 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237 >gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ ++L L+ E + + G +G++ ++D I+LD+ L + G E Sbjct: 8 RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNGME 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRRS 119 V R +R P+ +L+ D V GL +GADDYI+KPF EEL+ARIR ++ Sbjct: 68 VCRRIR-QISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKKL 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I L ++LD V I LT E+ +++ KN L ++ LN ++ Sbjct: 127 EIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV++ LR K+ + + +I T+ G GY+L++ Sbjct: 187 GFDYLGDTNVVDVYVRYLRTKI-DNKYNERFIYTIRGVGYLLKDE 230 >gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + D IILD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA---------GGKNYIETVWGRGYVLREN 224 + I++ +I LRKK+ + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIRAP 241 >gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] Length = 219 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +L I LK E + V G + F +LDLGL + G Sbjct: 1 MRVLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+ TPV +L+ +I D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + ++++ ++ V G + L KE+ ++ L + LT++ LY Sbjct: 121 NRPQPALEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E ++V I LRKK I TV G GY Sbjct: 181 WGEEAESNALEVHIHHLRKKF-----FPELIRTVRGVGY 214 >gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis Tohama I] gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella bronchiseptica RB50] gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis Tohama I] gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella bronchiseptica RB50] gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 122/235 (51%), Gaps = 6/235 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G FD +ILDLGL +PG Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L + + V + L+ +E ++E+L R ++K ++HL + Sbjct: 121 GGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +E I+V++ +LRKKL + I TV G GY L +D+ YL + Sbjct: 181 WGEEVSTNAIEVYVHRLRKKLEPSGVK---IITVRGLGYCLE---RDQGASYLAS 229 >gi|84687985|ref|ZP_01015849.1| DNA-binding response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84664017|gb|EAQ10517.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILL++DD+ L ++ L E+F V+ G D ++ K D +ILD+GL D G E Sbjct: 7 ILLVDDDEDLREALAEQLVMTEDFEVFEAANGADAMQKVKEQIHDLVILDVGLPDTDGRE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + PV +L+G S D + GL +GA+DY++KPF L+ARIRA +R+ Sbjct: 67 LCKLMRKQGVKCPVLMLTGHDSDADTILGLDAGANDYVTKPFKFPVLLARIRAQLRQHEQ 126 Query: 122 HAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 127 SEDAVFQLGPYTFKPAMKMLITEDEKKIRLTEKETNILKFLYRSQEGVVARDVLLHEVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ G + T G GY L Sbjct: 187 YNAGVTTHTLETHIYRLRQKIEPDPGNARLLVTESG-GYRLV 227 >gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V G G ++D IILD+ L G+ Sbjct: 1 MRILIVEDEIKTGTYLRKGLTEAGFTVDWVADGVTGQHRALTEDYDLIILDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ST V +L+ ++DKVRGL+ G DDY+ KPF+ EL+AR+R+I+RR + Sbjct: 61 TVLKNLR-RTHSTSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +L ++L + QG I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 PRDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++D I +LR K+ + I TV G GYVL E Sbjct: 180 MNFDSDTNVVDAAIRRLRAKVDDN-YEPRLIHTVRGMGYVLEE 221 >gi|239940925|ref|ZP_04692862.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987401|ref|ZP_04708065.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291444359|ref|ZP_06583749.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347306|gb|EFE74210.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A ++ L++ F V + G+ + FD ++LD+GL GF Sbjct: 3 RILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A+++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R R + Sbjct: 63 VLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRRRTAAR 122 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +G L+++L + + + LT +E+ ++E+ L++E L+H++ Sbjct: 123 APEVTMLRSGTLALDLRTRRARAEDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LR+KL +ETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRRKLGA-----ERLETVRGMGYRL 218 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 233 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 121/235 (51%), Gaps = 3/235 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD LA + L+ + G + +FD +ILDLGL + G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV IL+ SIE +V+GL GADD+++KPF EL AR+RA+ RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +E I+V++ +LRKK+ G I TV G GY L + A+ Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEKFAEATPTTLTPP 232 >gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD + + L+ V G+ D I+LDL L G Sbjct: 6 HILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPGDDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR P+ +L+ D++ GL+ GADDY+ KPF+ EL+ARI+ I+RR Sbjct: 66 LCRNLRAKSDI-PILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARS 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ + G V G + L+G EY+++ + N L ++ Sbjct: 125 LPRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVLNRDQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +P + IDV + +LR++L + I+TV G GYVL + Sbjct: 185 LVDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVLSAPVE 237 >gi|257867146|ref|ZP_05646799.1| two-component system response regulator [Enterococcus casseliflavus EC30] gi|257873480|ref|ZP_05653133.1| two-component system response regulator [Enterococcus casseliflavus EC10] gi|257801202|gb|EEV30132.1| two-component system response regulator [Enterococcus casseliflavus EC30] gi|257807644|gb|EEV36466.1| two-component system response regulator [Enterococcus casseliflavus EC10] Length = 235 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59 +ILL+ED+++LA I+ L E ++ G++ + L + FD I+LD L G Sbjct: 4 KILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R P+ +++ + D V GL G DDY++KPF EEL ARIR I RR Sbjct: 64 ITVARRIRKESDI-PILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122 Query: 120 RGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A+ G+L +++ V+V G I LT KE+ ++ L T++ Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 LN ++ + + ++DV+I LR KL + G I TV G GYVLR + ++ Sbjct: 183 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLRTDHEE 235 >gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DD +L+ + V G ++ + Y D I+LD+ + GF Sbjct: 1 MYILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R P+ LS S ++D+V GLQ G DDY+ KPF EL+AR+ A++RR Sbjct: 61 DVCRQIR-RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119 Query: 121 GHAQSLIVT---GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL+++ V G + LT E++++ L L L+ Sbjct: 120 SDMLNPSARLSLGDLTLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNAGRVLNTSQILS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++ V+I +LR K+ ++ TV GY Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225 >gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134] gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLRQGLTEAGFVVDLAANGLDGHHLAMSEAYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++ LR A PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 RIVQTLRAAGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL ++L + G RI LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 VQASVDRVQVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +IDV I +LR K+ + I+TV G GYVL Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDT-KLIQTVRGMGYVLE 222 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+ED+ + L F V G DG+ + ++ IILD+ L + G+ Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR TPV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DILRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI D+ +++ + V G RI LT KE+ ++ +L R L++ + ++D Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV + +LR KL + K + TVWG GYV Sbjct: 180 MNFDSDTNVVDVAVRRLRAKL-DEGFEKKLLHTVWGMGYVF 219 >gi|255101735|ref|ZP_05330712.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307604|ref|ZP_05351775.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 238 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 15/234 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K +A +IE+ L ++ +NV+ G +G+++ + E I+D+ + + G + Sbjct: 6 ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGITL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + PV +LS S DK+ GL GADDY++KPF EL+AR+ + +RR + Sbjct: 66 TMKLR-ENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 123 AQS-------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + G L +N + K V + G I T E++++ LL Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRVF 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ + V + +R+K+ Y++ VWG GY + + Sbjct: 185 SADEIYERVWNENA-VNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237 >gi|307706889|ref|ZP_07643691.1| response regulator [Streptococcus mitis SK321] gi|307617762|gb|EFN96927.1| response regulator [Streptococcus mitis SK321] Length = 218 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFAFLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DMGRVFSYKDAKV-DFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L++ F GE+ + L + DA++LD+ + GF V Sbjct: 6 VLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ L+ + DKV+GL+ G DDYI KPF+ EL+AR+ A++RR + Sbjct: 66 CARIR-EQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+++ +TV V G + LT KE++++ L+ + +++ L ++ Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGLVFSRDDLLVKVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR KL +AA +I+TVWG GY Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAA---RHIQTVWGIGYKFE 223 >gi|209809014|ref|YP_002264552.1| transcriptional activator protein, response regulator [Aliivibrio salmonicida LFI1238] gi|208010576|emb|CAQ80951.1| transcriptional activator protein, response regulator [Aliivibrio salmonicida LFI1238] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ L + V ++ G DG+ Y++D IILD+ L + G+ Sbjct: 1 MKLLIIEDETKAGDYLKKGLTESGYTVDLSRDGVDGLYNATTYQYDLIILDVMLPKLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + STP+ +L+ ++D+V+G + GA+DY+ KPF EL ARI +R Sbjct: 61 QILQTLRNCENSTPIIMLTAKDQVDDRVKGFELGANDYLIKPFAFAELKARIENALRSQT 120 Query: 121 GHAQSLIVTGDLSVNLD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + V + +L T I LT KE+ ++EL ++ L++ + Sbjct: 121 ANSHTQKVNELVLCDLQLDLLKHTATRNHDNITLTAKEFSLLELFMRKQGEVLSRTTIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + + +IDV + +LR K+ + I TV G GY + E Sbjct: 181 LIWDMNFDSDTNVIDVAVKRLRAKI-DKPYDTPLIHTVRGMGYKMDE 226 >gi|99079892|ref|YP_612046.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99036172|gb|ABF62784.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ L E+F+V+ G+ +E K +D IILD+GL D G Sbjct: 6 KILLVDDDEDLREALSEQLVMTEDFDVFEAGDGQGAMERAKEAIYDLIILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + +P+ +L+G S D + GL +GA+DY++KPF L+ARIRA +R+ Sbjct: 66 ELCRLMRKQGVKSPILMLTGHDSDADTILGLDAGANDYVTKPFKFPVLLARIRAQLRQHE 125 Query: 121 GHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ V G + K + +I LT KE +++ L N + +++ L+ ++ Sbjct: 126 QSEDAVFVLGPYTFKPAMKILITEDERKIRLTEKETNILKFLYRSNNGVVPRDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARLLVTESG-GYRLV 227 >gi|46201500|ref|ZP_00208129.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L ++E ++ F V GEDG L +DA+ILDLGL I G Sbjct: 1 MRVLVVEDEPQLTLALERAFEAAGFAVDKAYDGEDGWHLGDTENYDAVILDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + + PV +L+ + +K +GADDY++KPF EE+V RIRA++RR+ Sbjct: 61 TVLSRWRESGRAMPVMVLTARARWAEKSLAFNAGADDYVTKPFEMEEVVTRIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA I G L+++ V G I LT +E++++ L+ ++ +++ + H+YD Sbjct: 121 GHAAPEITCGPLAIDTMGGRVSRAGLPIALTAQEFRILSYLAHHQSRVISRSELVEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +P+ ++DV + ++R+KL I T+ G+G+ + + Sbjct: 181 RDADPDSNVLDVLVARIRRKLGVD-----VIHTLRGQGWRMEAPGDGQ 223 >gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++++A + L+ F V + GE G + +FD ILDL L I GF Sbjct: 3 RILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGIDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K +TP+ I+S DK+ GL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKQIR-EKKNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I + ++ A+ V V + T KE+ ++ L+ N TKE Sbjct: 122 LVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 QKIWNMDSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRFK 228 >gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 258 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 24 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 83 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 84 TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 143 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 144 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 203 Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224 + I++ +I LRKK + G IET G GY++RE Sbjct: 204 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 256 >gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8] gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8] Length = 236 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 4/225 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFEV 62 L++EDD + +E + E++ V + GE ++ K + D ++LD+ L + GFEV Sbjct: 12 LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L + S PV +++ E K++G GADDYI+KPFN EEL AR++AI++R+ Sbjct: 72 LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPP 131 Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GD+ VN G ++ T E+ ++ L K T+T++ L ++ Sbjct: 132 AEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ID + +RKK+ YIETV+G GY E Sbjct: 192 GIDENIITRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDEE 236 >gi|257439558|ref|ZP_05615313.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Faecalibacterium prausnitzii A2-165] gi|257198005|gb|EEU96289.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 ++L+I+DDK L ++ ++ E + G +G+ L + + IILD+ L DI G Sbjct: 3 KVLIIDDDKELCALMKKCIEQEKLSAVTVYNGIEGVRLIDENKDSYSLIILDVMLPDIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F++L+ +R + PV +L+ SS EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 63 FQILQKIR-DTSNIPVLMLTAKSSEEDKVFGLRLGADDYLTKPFGINELLARVNSLIRRY 121 Query: 120 RGHAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 D+ ++ +TV V+ + LTGKE+ ++ L+ K TK+ Sbjct: 122 TTLNPFTADIDSISLKDMVIDKLNRTVTVKDIPVLLTGKEFDLLLFLASNKGRVFTKKQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++ + I FI KLRKK+ YI TV G GY + A Sbjct: 182 YSQVWEEEYAFDDSNIMSFISKLRKKIEPDPDHPFYILTVRGVGYRFNKEA 232 >gi|218288607|ref|ZP_03492884.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218241264|gb|EED08439.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L+ ++ +L+ E+F V V GE+G+ L + +DA+++D+ L + G+ Sbjct: 1 MRILLVEDDRGLSDALAQLLREESFQVDVAHDGEEGLYLAETAVYDALVVDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR ++ PV L+ + ++ +V+GL +G DDY+ KPF EE +AR+RA++RR+R Sbjct: 61 DLVRTLRDKRVHVPVLFLTALGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNR 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +G L ++ A+ I L+ KE+ ++E L + L +E N ++ Sbjct: 121 ELGTDMTLRSGPLVLDPLARRATFGNEPIKLSDKEFDLLEYLLSHRGQILMRERIFNRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +D+++ LRKKL G I TV GY+ + Sbjct: 181 GIDSDVMDTTVDLYVHYLRKKLQP-FGYDTAIRTVRNVGYMWSDP 224 >gi|197302707|ref|ZP_03167761.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC 29176] gi|197298289|gb|EDY32835.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC 29176] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD + + LK + + V+ G ++ + D IILD+ L G Sbjct: 3 KILIIEDDLEINALLADFLKEKGYAVHCQYDGLHVLDFLNKEKIDLIILDIMLPYRSGDI 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R PV I+S + ++K+ L+ GADDYI+KPF+ EE++ARI + +RR + Sbjct: 63 ILSDVRKKFTI-PVIIISAKETTQNKIDLLRLGADDYITKPFDMEEVLARIESNLRRVQF 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +L+++L+ T + G + LT KE+ ++ELL + +K ++ Sbjct: 122 QNSQTECLQYNNLTLDLEKNTAFLNGIELSLTAKEFGILELLMKYPDKVFSKSNLFQSVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D E ++V I LR KL +I+TVWG GY L + AKD Sbjct: 182 DTEYIAEDNTLNVHISNLRNKLKAICSDTEFIDTVWGIGYRLHK-AKD 228 >gi|149021563|ref|ZP_01835618.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP23-BS72] gi|147930259|gb|EDK81244.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP23-BS72] Length = 218 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + V+ ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYK-ATKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + +E L V G+ + +D +ILDLGL + G Sbjct: 1 MRVLLVEDDRLIGSGVEDGLIEAGMTVDWACDGKHAQLALETTPYDLVILDLGLPRVSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R + TPV +++ ++ D+V GL +GADDY+ KPF+ ELVAR RA+VRRS+ Sbjct: 61 ELLDWIRKRRDHTPVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I GDL V+ + TV RI L+ +E ++ L + L++ + LY Sbjct: 121 GRSTDTIEYGDLLVDPERLTVMRGSERIALSSRECALLVELLANQGRPLSRARLQDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E I+V I LRKKL I T+ G GYV+ + Sbjct: 181 WNEEIESNAIEVHISNLRKKLGA-----QLIRTIRGVGYVVEK 218 >gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440] Length = 242 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + + + D I+LD L G E+ Sbjct: 19 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 78 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 79 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 138 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 139 PSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 198 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L A ++TV G GY Sbjct: 199 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 238 >gi|289626997|ref|ZP_06459951.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646795|ref|ZP_06478138.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. aesculi str. 2250] gi|330867485|gb|EGH02194.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R + PV +LS +S KV+ L +GA+DY++KPF +E +ARIRA++R+ G Sbjct: 67 LSEFR-EWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+V+L + V + G + LT KEY ++ L+ +T++ L ++ Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + LR+KL++ +I T G GY L Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+ +DD + S+ L +E F G + IE D I+LD+ + ++ G + Sbjct: 6 HILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMPEMNGVD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S DKV L+ GADDYI+KPF+ E+VARI+A++RR Sbjct: 66 VCREIR-RMSNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRRITE 124 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + DL + V+V+G + T KE++++ +L+ +++E + + Sbjct: 125 TPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISREDIMQKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +++ ID + ++R+K++ K + TV+G GY Sbjct: 185 WGYNYEGDLRTIDTHVKRIRQKINVD-NAKWALSTVYGLGYKFE 227 >gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora inyonensis] Length = 231 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 110/228 (48%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD + + L+ V DG+ D ++LDLGL D+ G E Sbjct: 3 RLLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALENRPDLVVLDLGLPDLDGRE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR A PV + + + VR L +GADDY+ KPF +L AR+RA++RR Sbjct: 63 LLRMLR-AVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + G L V+ A+ V + G + LT +E+ ++ L+ R +TK + + Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + K +DV + LR+KL A Y+ TV G G L + Sbjct: 182 WQIPYGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRLAPPEE 229 >gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 238 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + +I + + + V G +E DAI+LD+ + ++ G EV Sbjct: 14 LLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGVEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TPV +L+ ++ D+V GL +GADDY+ KPF EL AR+RA++RRS Sbjct: 74 CRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRSEYD 133 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL ++ +++ G I LT E+ ++ELL L +E+ + ++ Sbjct: 134 PVPESERLVFEDLELDPESRLAYRGGRTIELTRTEFALLELLMRNAGRVLPREVISDRIW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 PE ++VF+ +R+K + G ++TV G GY LR A Sbjct: 194 GYELGPESNSLEVFVSCIRRK-TEGGGEPRLVQTVRGFGYTLRVPA 238 >gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330] gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12] gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330] gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12] Length = 236 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + G++ + + + +ILD+ + ++ G Sbjct: 8 MKILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++++RR+ Sbjct: 68 MQVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 126 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 127 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 187 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 233 >gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ L +SI+ L E ++V E ++ +D +++D+ L I GFE Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR + I+ P+ IL+ + +I DKVRGL GADDY++KPF+ EL+ARI++++RRS Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I L +N ++ V V+ + ++ +E+ ++EL ++E + +++ Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +IDV+I LR KL G YI+TV G GY E Sbjct: 187 EKIIKSNVIDVYILYLRNKLKPY-GYDRYIQTVPGYGYRFCEE 228 >gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + L + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ TP+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R + Sbjct: 66 ARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAT 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PVDSEAPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225 >gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L++ F G++ + + DAI+LD+ + + GF V Sbjct: 6 VLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVMMPNQDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ L+ + DKV+G + G DDYI KPF+ EL+AR+ A++RR+ Sbjct: 66 CARIR-EQSDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLRRTWRG 124 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+L+++ + V V + LT KE++++ L+ +++ L +++ Sbjct: 125 RERDGQLQFGNLAIDEKGRKVTVGSEPVRLTLKEFELLLFLAKHHGQVFSRDDLLVNVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR KL +A YI+TVWG GY Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAG---RYIQTVWGIGYKFE 223 >gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 250 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 226 >gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + F V + G DG+ L ++ I+LD+ L + G+ Sbjct: 1 MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K + PV +L+ +ED++ GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALRARKQT-PVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + GDL ++L A+ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 SHEPLQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V I +LR KL + + T+ G GYVL A Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFDNKLLHTIRGMGYVLENRA 223 >gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E L+ V G + + E++ ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGSGVEEGLRDAGMTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TPV +++ ++ D+V GL +GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 61 ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I DLSV+ TV G R LT +E ++ L + T L++ LY Sbjct: 121 GRSVETIEYQDLSVDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E I+V + LRKKL I T+ G GYV+ + + Sbjct: 181 WQEEVESNAIEVHVSNLRKKLG-----PGLIRTIRGVGYVVEKTS 220 >gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 209 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 104/212 (49%), Gaps = 5/212 (2%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 + + + L + + + G++ ++ + +D ++LD+ + ++ G V + +R Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVCKEIR-KTS 59 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRGHAQSLIVTG 130 P+ L+ ++V GL+ GADDYI KPF+ EL+AR+ A+ R ++ Q I G Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFG 119 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 + +N ++ +E G I LT KE+ ++ L ++E L ++ + + Sbjct: 120 PILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYDYAGSTRTV 179 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + +R KL + NYI+TVWG GY Sbjct: 180 DTHVKTMRLKLGESG---NYIQTVWGVGYKFE 208 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD LA + L+ + G + + +FD +ILDLGL + G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV IL+ SIE +V+GL GADD+++KPF EL AR+RA+ RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V++ +LRKK+ G I TV G GY L + Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEK 220 >gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB [Shewanella denitrificans OS217] gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + +++ F + + I L + D I+LD G + Sbjct: 4 RILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWMFPGGSGIQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + + L+ K P+ +L+ EDKV+GL+ GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 LAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I L ++ + V V + + E++++ ++E L+++ Sbjct: 124 APTRLEETIDVQGLQLDPVSHRVCVGDSVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVE-NTGHDRLIQTVRGAGYRF 225 >gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + +D +ILD+ L +I G+ Sbjct: 1 MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNLPEIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + + + + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 TVLQRLRAESATRIMML-TAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFDNKLIHTLRGVGYVLE 221 >gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea ananatis AJ13355] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ ++ + + + D I+LD L G + Sbjct: 20 RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGSGIQ 79 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR Sbjct: 80 FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRI 139 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + + EY+++ ++E LNH+ Sbjct: 140 SPMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 199 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 200 WGTNVYVEDRTVDVHIRRLRKALE-LTGHDRMVQTVRGTGYRF 241 >gi|304391092|ref|ZP_07373044.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656132|ref|ZP_07909023.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304325975|gb|EFL93221.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315493134|gb|EFU82734.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 246 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 116/220 (52%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+AL+ I ++L+S + G ++ + E D ++LDL L + G E Sbjct: 23 KILVVDDDQALSEMIGIILESSAYEPSFCADGAKAVDKFREVEPDLLLLDLMLPGMDGIE 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S D V GL++GADDYI KPF +EL+AR+ A +R Sbjct: 83 ICRRIR-EFSNVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 141 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + +NL + V G ++LT EY ++ L+ + ++E L ++ Sbjct: 142 AEHDVLKAAGVEINLASHEVSRGGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 201 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ++++V + +LR K+ + TV G GY + Sbjct: 202 RHASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 241 >gi|295106245|emb|CBL03788.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 1/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD LA ++ +L+ + V G G+ + +D I+LD+ L GF Sbjct: 1 MQILIVEDDVRLARALAHILEENGYGTDVVHDGATGLAWAEVGRYDVIVLDVMLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR +STPV +L+ ++ DK+ GL SGADDY++KPF EL+A +RA+ RR Sbjct: 61 SVVADLRRTGVSTPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +NL++ + IHL+ KE+ + ++L ++K++ + ++ Sbjct: 121 EVLFEKLSAGDLELNLESHDLSCGAKSIHLSYKEFCLAKVLIANAGAVVSKDLIIEKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 E ++ ++ LRKK+ IET+ GY NA+++T Sbjct: 181 VESTAEDNNVEAYVSFLRKKMKFLGSSAR-IETLRRAGYRFSVNAEEDTS 229 >gi|302559197|ref|ZP_07311539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302476815|gb|EFL39908.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 16/236 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+A+ +++E L E + V G + + D ++LD+ + I G +V Sbjct: 5 VLLAEDDRAIRNALERALTLEGYRVTAVADGVEALAQAHRSRPDVLVLDVMMPGIDGLQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR STPV +L+ + D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ Sbjct: 65 CRVLRAEGDSTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRAAPV 124 Query: 123 AQSLIVTGDL---------------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + + + ++ A+ + LT E++++ELL Sbjct: 125 PEPVREPAEEPKPDTSGRFVEAAGLRMDPQARRAWRGRRELELTRTEFELLELLIRNAGV 184 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L + ++ P K + V++ LR+KL + G I TV G GYVLRE Sbjct: 185 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DDPGAPQLIHTVRGVGYVLRE 239 >gi|255655689|ref|ZP_05401098.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296451695|ref|ZP_06893427.1| response regulator [Clostridium difficile NAP08] gi|296878939|ref|ZP_06902938.1| response regulator [Clostridium difficile NAP07] gi|296259458|gb|EFH06321.1| response regulator [Clostridium difficile NAP08] gi|296430052|gb|EFH15900.1| response regulator [Clostridium difficile NAP07] Length = 241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 15/234 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+I+D+ + +E +LK E N+Y ++G+E+ K D IILD+ L D G+ Sbjct: 4 RVLIIDDEVEILKLLETVLKKEGLSNIYTAKTRKEGLEVFKNINPDLIILDIMLPDGEGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R ++P+ LS + DK+ GL G DDY++KPF+ +E+ R++A +RR Sbjct: 64 DICKEIR-KTSNSPIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLS 122 Query: 121 GHAQSLIV-------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 + S G +N + G I L+ KE +++ L + +N Sbjct: 123 YFSDSQNENTDSDNNEEKTISFGPYILNESRAELIKDGKSIGLSAKELKILSLFANNQNQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++KE + ++ I V I K+R+KL + YI T+ G GY L Sbjct: 183 IISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236 >gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + +SI +LK E + G + +++ + D I+LD+ + + G Sbjct: 5 KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L LR K PV ILS + DKV GL GADDYI KP+N EL+AR++A +RR R Sbjct: 65 ALMKLR-EKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 IV G L ++ + + V+G +HLT EY+++ELL E Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183 Query: 173 MFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +R+K+ A Y++ VWG GY + + Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKMEK 235 >gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +EL K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI G+L +N + V++ + LT K ++++ +L+ +K ++ Sbjct: 125 GETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWKE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224 + ++V I LR++L+ + + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228 >gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 235 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 9 RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ LR + PV L+ ++EDK+ GL GADDY++KPF+ EE+V R+R I+RR Sbjct: 69 LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + I D+ ++ D + V G + L+ E+ ++ + T L+K L+H Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE + Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREPRR 235 >gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 120/225 (53%), Gaps = 13/225 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + L +++ NV+ G + +++ + + D I+LD+ + + G + Sbjct: 6 ILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILENTKVDLIVLDVMMPKMDGMKA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K++ P+ ILS DK+ GL GADDY+ KPFN EL+ARI++ +RR + Sbjct: 66 CMKIR-EKLNVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYKQL 124 Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I +LS+N+ V ++ +I LT E++++ LL+ + + Sbjct: 125 NNNFKALQEEVIQIDELSINISTHEVFLKDKQIKLTPYEFKILVLLAQNRGKVFSIASIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++++ + + V I ++R+K+ YI+TVWG GY Sbjct: 185 ENVWEEDYVASDRTVTVHIRRIREKIGRD-----YIKTVWGVGYK 224 >gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD +A L+ F V V GE G+ + +D +ILDL + + GFEV Sbjct: 5 VLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R K P+ I++ + D +RGL GADDYI+KPF ELVAR++A + R Sbjct: 65 CKKIR-EKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLARYERL 123 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++++ DL ++ D + V V LT KE+ ++ L+ N +KE Sbjct: 124 VGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKEHLFER 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ +++ + V I K+R+K+ + YIETVWG GY Sbjct: 184 IWGVDALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYR 226 >gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++A+ +I LK++ GE+ +E K D +ILDL + I G E Sbjct: 3 KILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLMMPKIFGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDYI KPF+ E+VARI+ I RR Sbjct: 63 VCKEIR-KISEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRVNS 121 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L+++LD + G +I +T KE +++ L++ + L++E L+ Sbjct: 122 KSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREEILD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++D I +LRKKL K I+TV+G GY Sbjct: 182 KVWGYDYFGDTRVVDTQIKRLRKKLPEE-DEKWVIKTVYGIGYKFE 226 >gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L L +N GE+ I + F I+LD+ + + G+E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +++ D VRGL+ GADDY++KPF++EEL ARI A++RR+ H Sbjct: 64 CKKIR-SFSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q + + +V V + LT E+ ++ L N L+++ + ++ Sbjct: 123 KQIQYH--GIIWDEAKHSVSVHNEELFLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180 Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRE 223 E + +D I LR KL N+++TV+G GY + Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRWVD 222 >gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] Length = 247 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI+++ED++AL + L++E + V V D G++ K D +ILD L + G E Sbjct: 4 RIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLPGLSGVE 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR+RA+ R Sbjct: 64 LCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRRS 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +V GD+ ++ + V G + L E++++E ++E L+ + Sbjct: 124 KPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLDGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +DV + +LRK ++ ++ I TV G GY L E Sbjct: 184 WGRDIYVDERTVDVHVGRLRKAINR-GRERDPIRTVRGAGYALDEQ 228 >gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + L + F+V G + + + ++LDLGL D+ GFE Sbjct: 3 RVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV +LS + +KV L +GADDY++KPF +EL+AR+RA VRR Sbjct: 63 VLAGLRG-WTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAR 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++VT +V+L AK V G +HLT E+ M+ELL + ++++ L+ + Sbjct: 122 TQGEGEPVVVTDSFAVDLVAKKVTKDGAEVHLTPTEWGMLELLVRNQGKLVSQKDLLSEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E + V++ +LR+KL ++ T G GY Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPAHPRHLITEAGMGYRFEP 226 >gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + + + G G +D I++D L + G Sbjct: 4 MRILIVEDDSEAGAYLVKAFREQGHVADHEVDGLAGYAAASDGRYDVIVVDRMLPRLDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA--IVRR 118 ++ LR KI TP ILS + ++D+V+GL++G DDY++KP+ EL+AR+ A R Sbjct: 64 SLISGLREQKIETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALARRRG 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ GDL ++ A V G I L +E++++E L +T+ M L ++ Sbjct: 124 GAKQEETVYRVGDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D +P+ +IDV I +LR K+ + + T+ G GY++RE A+ Sbjct: 184 WDYHFDPQTNVIDVHISRLRAKIDKSRETP-LLHTIRGAGYMIREGAR 230 >gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F++ G +G +DA ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S + G + ++ + T + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDEVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLSD 218 >gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus 16] gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus 16] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ + L+ + V + G G+ + E+D ++LD L + G Sbjct: 1 MKLLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPYLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A++ PV ILS M S+ED+V GLQ+G+DDY+ KPF EL+AR+ I+ R++ Sbjct: 61 KVLSAIKATLEHLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L+V+L A V + L KE+Q+I+ +++ + Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV + LR+KL AG ++ + TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCRDLLHTVRGAGYVLR 223 >gi|164686903|ref|ZP_02210931.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM 16795] gi|164604293|gb|EDQ97758.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM 16795] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ IL+IEDD+ L + LK + +N E+G +L + E D ++LD+GL D G Sbjct: 1 MKNILIIEDDRMLNKGVAFALKKDGYNTMCAYTKEEGKKLIQQNEVDFLLLDIGLPDGSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ KI P+ + + ED ++G +SG DDYISKPF+ E L +I AI++RS Sbjct: 61 LDLCNEIK-EKIDFPIVFFTANDTEEDMIKGFESGCDDYISKPFSIEVLKFKINAILKRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H++ L V DL ++ DAK V + I L+ EY+++E+L K +TKE+ L+ L+ Sbjct: 120 DIHSKKLFVYKDLKIDFDAKRVYKRNEEIRLSATEYKLLEILCKNKGRAMTKEILLDKLW 179 Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + + V I ++RKK+ + + YI T++G GY E Sbjct: 180 DYNGNYVDDNTLSVNIRRIRKKIEDDSKNPEYIITLFGIGYTFGE 224 >gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 R+LL++D+ L + + L+ E + V + + G G+ + D ++LD L D G Sbjct: 9 RLLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDFTGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 ++ R +R +S PV +L+G ++DKV L +G DDY+ KPF+ EEL+AR+RA+ R Sbjct: 69 DICRRIRSTGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRRSN 128 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ GDL +N V I L+ KEYQ++ L N ++ L Sbjct: 129 ALQPQASEPDVLRIGDLELNQANHDVRRGSRSIQLSNKEYQLLVFLMRSPNKVQSRLEIL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + ++DV+I LR+K+ + I TV G G+++R Sbjct: 189 HGVWGESFYGDDNLLDVYIRYLRQKVE-SPDEPKLIHTVRGVGFMMR 234 >gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ L I L E + V GE +EL + + D +ILD+ L I G+ Sbjct: 3 KILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVLPKIDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSR 120 V R +R + P+ +L+ S +D + G + GADDY+ KP++ L+ +++ + S Sbjct: 63 VCRRIR-KNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLEKYSG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L + +N+ A+ V V G+ I LT E++M+ L + + +E + ++ Sbjct: 122 NMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + K ++ I LR KL + I TV GY E Sbjct: 182 YDFYGDEKTVNSHIRNLRAKLGSKGS---CIVTVIRSGYKFEEE 222 >gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 282 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 41 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V++ +LRKK+ + I TV G GY L + Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 260 >gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 216 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A+ IE+ L+ + V GE+ E+ + D ++LD+ L I GF Sbjct: 1 MRILVVEDDLAIGDLIEINLQMSGYEVLKAIDGEEAKEVFDKEDIDLVLLDVMLPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ ++ I PV L+ +S+ DKV+GL+ GADDYI KPF EL+ARI + RR Sbjct: 61 QLIKYIKKKDI--PVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRYN 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ V+++ + V++ G + LT KE+Q++ L KN L++E LN ++ Sbjct: 119 KDDKIIKFK-NIEVDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D+ + +LR+KL I+T++ GY L+E Sbjct: 178 YDYVGETRTVDIHVNRLREKLDLRNN----IKTIFKVGYRLQE 216 >gi|268316932|ref|YP_003290651.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334466|gb|ACY48263.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 231 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 3/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD+ LA ++ L+ E + V G + + +DA+I+D L + G Sbjct: 1 MWILLVEDDERLARALARGLREEGYQVDRVADGVEAEARVQASHYDALIVDWRLPRMDGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF-NKEELVARIRAIVRRS 119 ++R LR A P+ +L+ + +E +V GL +GADDY+ KPF +E L + R Sbjct: 61 TLVRRLREAGYQMPILMLTALDDLEHRVAGLDAGADDYLGKPFAFEELLARLRALLRRSP 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +I G L +N + V V + + L KEY ++ L+ L++ ++ Sbjct: 121 VWQATDVIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETC 230 IDV + LR+KLS A IETV G GY LR E + ET Sbjct: 181 GDPFYVSDNTIDVTVSGLRQKLSEATPALQ-IETVRGVGYALRLEPSATETP 231 >gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F+V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V GH I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGHAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKL---------SNAAGGKNYIETVWGRGYVLREN 224 + I++ +I LRKK+ IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIREP 241 >gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 111/234 (47%), Gaps = 12/234 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60 ILLIEDD LA I L + V+ G++G+++ K D IILDL L D+ G Sbjct: 5 ILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64 Query: 61 EVLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 +V + +R P+ +L+ D+V GL+ GADDYISKPF EL+ARIRA++ Sbjct: 65 QVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAVL 124 Query: 117 RRSRGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RR Q+ G LSV D+ V + + LT ++Q++ + L + Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184 Query: 172 EMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + + IDV I +LR + + I TV G GY + Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >gi|148652516|ref|YP_001279609.1| two component heavy metal response transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571600|gb|ABQ93659.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 244 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K L I+ L F V G DG +F +++D+ L D+ GF Sbjct: 1 MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A TPV L+ + D+++G++ G DDY++KPF EL+ RI++++RR+ Sbjct: 61 ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I DL +++ +TV I LT KE+ +++L R+ L + + + + Sbjct: 121 QSDYKSSVIHMADLKMDIAKRTVYRGDTNIKLTAKEFALLQLFLERQGEVLPRTVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + + +IDV I +LR K+ + I TV G GY L Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKI-DDGFDIKLIHTVRGMGYKLEP 224 >gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L + ++ + G D + + I+LD+ L G ++ Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRDGMDI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + P+ +++ D++ GL GADDYI KPF+ E+VAR++AI+RRS Sbjct: 70 CKELR-SFSDVPIVMITARVEEIDRLLGLDPGADDYICKPFSPREMVARVKAILRRSSSS 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ G + LT E +++ + +++ L+ LY Sbjct: 129 EPHTPKG--LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL A G++ I++++G GY L Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ L+ + ++ + V G + L FD +ILDLGL + G Sbjct: 1 MRILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F VLR+LR PV IL+ + D+V+GL GADDY+ KPF+ EL AR+RA++RR Sbjct: 61 FSVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L+ + + + G + LT +E ++E L LR ++KE L LY Sbjct: 121 QCGVNPVYSCGTLTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V+I +LRKK+ A I T+ G GYV+ + Sbjct: 181 SYAEEASNNAIEVYIHRLRKKIEPAGVT---IRTIRGLGYVIND 221 >gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD+ + +++ ++L+++ + + GE+G++ FD +I+D+ + +I G E Sbjct: 3 KLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ L+ S DK+ L +G DDY+ KPF+ EL+ARI+A++RR R Sbjct: 62 VCRRIR-EKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + S I L++ V G ++ LT KEYQ++ LL T + + Sbjct: 121 YDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180 Query: 173 MFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I V I LR KL G + I+TVWG+GY E Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232 >gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 243 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++DD + + L +V G + +L + D ++LDL + G Sbjct: 6 HILVVDDDHEIRDLLARFLAKHGLHVSTARDGAEMTKLLDAHGIDLVVLDLMMPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ M+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR+ Sbjct: 66 LTRRLRAQGCTLPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRAPA 125 Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLT 170 + +++ + + G + L+ E+ ++ L+ Sbjct: 126 EGDAAAPTSGGGGHRLRFDGWVLDMATRDLTDPDGVVLTLSAGEFDLLRAFVEHPRRVLS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L+ + P + ID+ + +LR+ L++ I+TV G GY+ + Sbjct: 186 RDQLLDLARGRQAIPFDRSIDIQVSRLRRXLNDDPKEPQLIKTVRGGGYLFTPDV 240 >gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 222 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + I L+++ V T G + + F+A +LD+ + GF Sbjct: 1 MKILVVEDDLHIQRLIRETLEADGHRVTATADGNEAAAWIDGHLFEAAVLDVMVPGRTGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ LR + P+ +L+ + + DK G +GADDYI+KPF+ EELV R+ A+ RR + Sbjct: 61 ELCALLR-SNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVARRYQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G+++++ ++ + + R+ + +E++++ L+ ++E + H++ Sbjct: 120 KAAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIEHVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR +L IETV G GY L Sbjct: 180 LDFMGDDRTVDVHIKRLRTRLHQTEAIT--IETVRGLGYRLE 219 >gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ ALA ++ L+ E ++V V GE+G+ D I+LD L + G EV Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLSGIEV 64 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R + P+ +L+ D+VRGL +GADDY++KPF+ EL ARIRA++RR R Sbjct: 65 CRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRIR 124 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + D+ ++ A V G +HL E+++++ ++E L+ ++ Sbjct: 125 PGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +LRK L N G N I TV GY L Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEGTVNPIRTVRSAGYSL 225 >gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I ++ED+ ++A ++ L+ EN+ V++++ GE+G++ K E D I+LD L D+ G E Sbjct: 4 KIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLSGIE 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRR 118 + R+L+ P+ +L+ EDKV GL +GADDY+ KPF+ ELVARI A + R Sbjct: 64 ICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALLRRV 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + DL V+ K V +I L EY++I ++E L ++ Sbjct: 124 KPQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E++ +DV I +LRK + N G K+ I TV GY L Sbjct: 184 WLNSINVELRTVDVHIRRLRKAI-NLPGKKDLIRTVRSTGYSL 225 >gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++ L+ ++ P+ +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A+ R Sbjct: 64 FIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEDPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225 >gi|228997776|ref|ZP_04157380.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229005316|ref|ZP_04163031.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228755955|gb|EEM05285.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228761908|gb|EEM10850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 215 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ +D++ + ++ + E F V + GE+ +E+ + D ILD + G Sbjct: 1 MRVLIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALEIFYEVKIDLAILDWMMPKRNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 61 TVCQEIKKNSSVK-VLMLTAKSENEDELAALQSGADEYVKKPFHPGILLTRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +L ++L V + +T E ++I+ K T LT+E L+ ++ Sbjct: 115 LNQDEVIQVQNLKIDLIKNKVYKSDKELEITKTELELIKCFLNHKGTILTREKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +D + +LRKK+ I+T G GY L + + Sbjct: 175 FDYFGDERTVDTHVRRLRKKIGED-----IIKTHRGLGYSLEDERE 215 >gi|251796056|ref|YP_003010787.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543682|gb|ACT00701.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL +D+ + +EL L +E F++ G +++ K ++ +ILD+ + ++ GF Sbjct: 4 IRLLLADDEPHIIQFLELGLLNEGFDIRTAQDGAAALQVAKEFQPHVLILDVMMPELNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +A++ + V +L+ IED+V+GL GADDY+ KPF+ EEL+ARI+A +R Sbjct: 64 EVCQAVKDTGANVAVIMLTAKDDIEDRVKGLTLGADDYVVKPFSFEELLARIKARLRNQF 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G VN K + Q + L+ EY++++ + L+K L+ ++ Sbjct: 124 PSLLGEATYGPFRVNDVKKELIYQDQVLELSPTEYELLKYIVQNNGIVLSKAQILDSVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R E I++V+I LR KL + I T+ G GY + Sbjct: 184 YRFGGEENIVEVYIRSLRDKLGD--KEHRLIRTLRGVGYRM 222 >gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 234 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A+ I L + ++V + G++G+E + E+D IILD+ L +I GF Sbjct: 4 KILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEIDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ + P+ ILS DKV+GL+ GADDYI+KPF+ EL AR+ ++R + Sbjct: 64 VCKNIRL-LSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + D V + +I LT KE+ ++ +L+ +N TK+ Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++++ + I V + +LR+KL + YI+TVWG GY Sbjct: 183 ENVWNQDNLEGNNTITVHVKELRQKLKDNVKNPKYIQTVWGTGYKF 228 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ L + L+ E++ D G D ++ + D +ILD+ + + GF V Sbjct: 6 VLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGFHV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K S PV +L+ + DKVRGL++GADDY+ KPF+ +EL+AR+ A +RR+ Sbjct: 66 CERIR-QKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124 Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+L ++ D + V V G I LT +EY+++ L+ ++E ++ Sbjct: 125 KIRGRRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVWT 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +D I LR KL+ G +IETVWG GY Sbjct: 185 DTAASSLRTVDTHIKTLRLKLN---GAGRFIETVWGVGYKF 222 >gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 230 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ + ++ ++ E F V GE+ + Y I+LD+ + + G EV Sbjct: 5 ILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPLMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K +TP+ +++ S DK+ GL SGADDYI KPF+ E+VARI+A++RR Sbjct: 65 CNKIR-EKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRRITFP 123 Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L +++D +V+++G I+LT KE +++ +LS N ++++ L++++ Sbjct: 124 ESNKMSLIKYESLELDIDNYSVKLKGKNINLTKKEIEVLWMLSSSPNKIVSRDDLLDNIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D I ++R KL I+T+W GY Sbjct: 184 GVDYFGDPRTVDTHIKRIRSKLHLNGQYNWDIKTIWAIGYKFE 226 >gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8] gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 114/220 (51%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +L + LK + + + G + +++ + D II D+ + ++ G+E+ Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIMMPNMDGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A P+ +++ S EDK G +GADDY+ KP + E++ R+ A+++RS+ Sbjct: 64 TRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRSKLA 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + G ++ DA+TV + G + E++++ L N T+ L+ L+ Sbjct: 124 SEHTMTVGSCVLDYDAQTVSIDGGAGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELWGM 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYV 220 + + + +DV I +LR ++ I TV G GY Sbjct: 184 DKDVDERTVDVHIKRLR---ERYGSTDDFSIVTVRGLGYK 220 >gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL++D++ + ++L L + + G + +EL + FD I+LD+ + ++ G+ Sbjct: 2 IKILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKNFDIILLDVMMPNMDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R + P+ +L+ + D V+GL GADDYI+KPF+++ LVARI A++RR++ Sbjct: 62 DTCYQIR-QISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVLRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + TV V +I LT E+ ++ L N +++ + ++ Sbjct: 121 KDGFISFN--GIEWDKTKHTVTVYSEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLREN 224 + + E + +D I +R KL + Y+ET++ GY + Sbjct: 179 YQTDIEYRTVDSHIRNIRDKLRKKDFPVEKYLETIYKVGYKWKSE 223 >gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +E+ LK+EN+ VY + +E + E D ILD+ L + GF Sbjct: 4 KILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIMLPGVDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + + P+ +L+ DK+ GL GADDY++KPF ELVAR++A +RR + Sbjct: 64 ICQKIR-ERYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRRYKK 122 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + + L +++ + G + LT E+ +++LL + ++ E Sbjct: 123 YSPVSEVETQKTTRLSYKKLELDMKTYECLLDGELVALTPTEFSILQLLLKQAGNVVSLE 182 Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I V I LR+KL + YI+T+WG GY + Sbjct: 183 ELFRSVWKDEYYNKNSSTITVHIRHLREKLRDTGANPTYIKTIWGVGYKI 232 >gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+K + + L + V GE+ +E E+D I+LDL L + G E Sbjct: 15 RLLIVEDEKQICDMVAKGLYDAGYEVDTCYDGEEALECILSEEYDLIVLDLNLPGVDGME 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 75 ILKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFV 134 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +G + + + +G ++ LT KE ++E L L +++E + H++D Sbjct: 135 QKDVCLESGGIKFDTIKREAYAKGEKVPLTRKENGILEYLLLNLGRPVSQEELMEHVWDA 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LR+KL G + I G GY +RE + Sbjct: 195 SVDSFSGAIRVHMSSLRRKLKAVLGY-DPILNKVGEGYKIREES 237 >gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1] gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1] Length = 220 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ LA + L + + V D G D + DA++LDLGL + G Sbjct: 1 MHILVVEDEPTLAAQLVEALAAAGYAVDRADNGRDAHFIGDVEPLDAVVLDLGLPLMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 TVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARLRALIRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++ A V V G ++LT E ++++ L + +++ H+Y Sbjct: 121 GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLDYLMHHQGEIVSRSDLTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VFI +LRKKL IETV G GY + A Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLPA-----GMIETVRGLGYRMVCPA 220 >gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+++D+ + + + E + V + G + + LC ++D II+D+ + + G+ Sbjct: 3 HILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVMMPRLDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----VR 117 + PV +LS DK+ G + G DDY+ KPF+ +EL+AR++ + R Sbjct: 63 A-CKEIHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSAR 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V L V++ + V V G + +T KEY ++ L KN LT++ L Sbjct: 122 QESDAQLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +D I LR L + +I T+ G GY Sbjct: 182 VWGYDFFGDDRTVDTHIKMLRNSLGEY---RKFIVTLRGMGYKFE 223 >gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD+ + +++++ L + V G++ + +ILD+ L + G Sbjct: 28 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILLPGMNGH 87 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV +++ +S E+++R + ADDY++KPF + L+ R+ A++RRS Sbjct: 88 ELLREFR-KLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSG 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ L G L++ + V + LT KE++++ LL TL+ E+ L+ ++ Sbjct: 147 AVAKELHY-GKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 205 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + I LR KL + I+TV G GY L E + Sbjct: 206 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 245 >gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638] gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 219 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + ++ L F+V G G +DA++LDL L + G Sbjct: 1 MRILLVEDDKLIGDGLKAGLTKMGFSVDWFTDGGTGKTALYSAPYDAVVLDLTLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 61 DILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S + G+++++ + ++ G + L KE+ ++ELL L ++ LY Sbjct: 121 GQTRSELRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSH-----FIRTVHGIGYTLGD 218 >gi|322377335|ref|ZP_08051826.1| DNA-binding response regulator VncR [Streptococcus sp. M334] gi|321281535|gb|EFX58544.1| DNA-binding response regulator VncR [Streptococcus sp. M334] Length = 218 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + I L + + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGISDYLTDCGYEIIEAADGQEALEKFSSYEVTLVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYKDAKV-DFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|319780215|ref|YP_004139691.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166103|gb|ADV09641.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 233 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G +E + ILD+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLAARPPNLAILDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-------- 114 LR +R K PV L+ D++ GL+ GADD+I KPF++ LV R+RA Sbjct: 64 LRRMR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFIRKPFSQRLLVERVRAVLRRASAR 122 Query: 115 -IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + G L ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 123 EAAAKTPSQQARSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 183 LMDSAYDEQVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFRE 232 >gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I L+ V G G EL +DAI+LDL L G Sbjct: 1 MRVLLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLPGKSGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR AKISTP+ IL+ E ++ L SGADDY+SKPF+ EL+AR++A++RR + Sbjct: 61 EVLRGLRHAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ D+ V+ + V +G+R+ L+ EY+++E L R ++K L HLYD Sbjct: 121 GTADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +I+V I LR+KL+ GG IET+ RGY L E + Sbjct: 181 FDWEHHSNVIEVHISNLRRKLNVTNGGP-VIETLRHRGYRLHEES 224 >gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 269 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ++ + + L+ E + + G+ ++ + + DA++LD+ L D+ G Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAGA 163 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++S++V GDL+++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 164 ADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG + I T G GY+++ Sbjct: 224 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 266 >gi|257877232|ref|ZP_05656885.1| two-component system response regulator [Enterococcus casseliflavus EC20] gi|257811398|gb|EEV40218.1| two-component system response regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59 +ILL+ED+++LA I+ L E ++ G++ + L + FD I+LD L G Sbjct: 4 KILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R P+ +++ + D V GL G DDY++KPF EEL ARIR I RR Sbjct: 64 ITVARRIRKESDI-PILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122 Query: 120 RGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A+ G+L +++ V+V G I LT KE+ ++ L T++ Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 LN ++ + + ++DV+I LR KL + G I TV G GYVLR + ++ Sbjct: 183 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLRTDHEE 235 >gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ ++ L ENF + G G++ F++ D IILD+ L + G + Sbjct: 3 KILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLPGLNGIQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ + + E+ GL SGADDY+ KPF EL AR+R+++RR Sbjct: 63 VCSKIR-ETSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L DL ++ D KTV GH I LT EY+++ L + ++ L + Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E ++DV++ LRKKL G I TV G GYV+RE Sbjct: 182 WGIDFESGTNVVDVYVNYLRKKLMQ-FGDSKLIHTVIGMGYVMREEE 227 >gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A + E + + + G + E DA ILD+ L D+ GF Sbjct: 1 MRLLIVEDEGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ LR + PV +L+ S+ D+V+GL +GADDY+ KPF+ EL AR+RA+ RR Sbjct: 61 ELCARLRQSGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRAG 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G L ++ ++ V ++L+ E+ ++ELL ++ LT+ L+ + Sbjct: 121 IGRDVAVRLQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + R ++D ++ LR K+ IETV G GY LR Sbjct: 181 WGYRYPVTSNVVDQYVRYLRHKVGQD-----LIETVRGVGYRLR 219 >gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ +A+ + L ++ F+V D + + DA+ILD+ L + G+ + Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR +R PV L+ S+EDK+ GL G DDY++KPF+ EE+VAR+R I+RR Sbjct: 76 LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +V D+ +N + V G + L+ E+ ++ + L+K L H+ Sbjct: 136 DGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILEHV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ +++ ++ LR+K+ G K ++T+ G GYVLRE Sbjct: 196 WHYDFGGDMNVVESYVSYLRRKI--DTGEKKMLQTLRGVGYVLREP 239 >gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+K + ++ L+ + + V+ + G + IE D ++LD+ + + GFE Sbjct: 3 KILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASK-SPDLMLLDVNMPEADGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +S P+ L+ EDK++G SG DDYI KPF+ +EL ARI A +RR Sbjct: 62 VCRKVR-DHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIRRDHR 120 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GD VN KTV + ++ LT KEY +IELLSL KE ++ Sbjct: 121 STAASNVRFFGDTVVNYTEKTVSCKDEQLDLTKKEYGIIELLSLNAGQVFDKERIYEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +I I ++R KL +++ TVWG GY Sbjct: 181 GYDAEGDSSVIAEHIRRIRAKLGKY-SEDSHLGTVWGMGYKW 221 >gi|257870747|ref|ZP_05650400.1| two component transcriptional regulator [Enterococcus gallinarum EG2] gi|257804911|gb|EEV33733.1| two component transcriptional regulator [Enterococcus gallinarum EG2] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD+ ++ + L+ E + V++ + G G ++ I+LD+ L + G E Sbjct: 4 RVLIIEDDEDISMIEKDFLEMEGYEVHIVNDGCVGYHEALTEKYQLILLDVMLPGMDGHE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K+ P+ +++ S +K+RGL GADDYISKPF+ ELVAR++A + + Sbjct: 64 ICRNIR-DKVDIPIIMVTAKSEELEKLRGLGIGADDYISKPFSPTELVARVKANIAQYNR 122 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G + +N V V G + +EY+++ L +KE Sbjct: 123 IKRGQQTETVSSEIELGGIRINSQTHRVYVDGIEVDCKHREYELLLFLMENPEIVFSKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I +LR+K+ YI+TVWG GY + Sbjct: 183 LYEKIWGMEALGNIRTVAVHINRLREKVEEDPTNPQYIQTVWGAGYRFK 231 >gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ L + L++ ++ + + G+ + + D I+LDL L G Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ D++ GL+ GADDYI KP++ E+VAR++ I+RR + Sbjct: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKNILRRCKP 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L ++ G + LT E+++++ LSL ++E LNHLY Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ID I LR+KL + +++I V+G GY +A Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 >gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. phaseolicola 1448A] gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori str. 301020] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L + ++ + G + + + I+LD+ L G ++ Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ +++ D++ GL GADDYI KPF+ E+VAR++AI+RR+ Sbjct: 70 CRELR-SFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ G + LT E +++ + +++ L+ LY Sbjct: 129 DPHTPKG--LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL A G++ I++++G GY L Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ F + D I+LD L G + Sbjct: 4 RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R R + P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA++RR+ Sbjct: 64 LARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + V G L ++ A V + + EY+++ T+ L+H+ Sbjct: 124 REDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + IDV I +LRK L G +N ++TV G GY Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225 >gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039] gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162] gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071] gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636] gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679] gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317] gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071] gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636] gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317] gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039] gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162] gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + G++ + + + +ILD+ + ++ G Sbjct: 1 MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++++RR+ Sbjct: 61 MQVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 120 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+ + L+L+ + + + + D ++LD L G + Sbjct: 4 RILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGSGIQ 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ +R S PV +L+ ED+V GL+ GADDYI+KPF+ +E+VAR+RA++RR Sbjct: 64 FIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIRRI 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I L ++ + V + + E++++ R +E LN++ Sbjct: 124 VPTTTKEIIEIQGLILDPSSHRVIANEQVLAMGPTEFKLLHFFMARPERVYNREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G I+TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKVLEKN-GHDKMIQTVRGAGYRF 225 >gi|255036521|ref|YP_003087142.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949277|gb|ACT93977.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA ++ L+ +++ V + G+ G ++ Y FD IILD+ L + G+ Sbjct: 1 MKILIVEDEPKLAGFLKRGLEEQSWEVELAYDGQVGKKMASNYRFDVIILDVNLPLLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR--AIVRR 118 ++ + LR ++TP+ L+ + +I+DK+ G ++G DDY+ KPF EL+ARI+ + Sbjct: 61 DLAKQLRADGLTTPILFLTALGTIDDKLDGFEAGGDDYLVKPFEFRELIARIKVLSQRNS 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + ++ DL +NLD K G+RI LT KE+ ++E L + +++ + Sbjct: 121 VREQSSQVLTLADLELNLDEKVARRGGNRIDLTAKEFALLEYLMRNRGRVVSRVDIAEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D R + +IDV+I LRKK+ I TV G GY+ +E Sbjct: 181 WDIRFDTGTNVIDVYINFLRKKVDKDYPT-KLIHTVVGMGYIFKEE 225 >gi|160939834|ref|ZP_02087181.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC BAA-613] gi|158437268|gb|EDP15033.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC BAA-613] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + + +++ L+ + + E+G+ + + D +I D L + G E Sbjct: 3 RIYIIEDDENIMNLLKIALEGFGYAAEGFETAEEGLARMREEKPDLVIFDWMLPGMDGTE 62 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 ++ +R P+ +L+ DKV GL GADDY+ KPF EL ARIR++ R Sbjct: 63 AIKEVRNTEQLKYVPIMLLTAKEKELDKVVGLDCGADDYMVKPFGVLELSARIRSLLRRT 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + ++ D+ VN + V G + LT KE++++ L ++ +T++ LN + Sbjct: 123 KREEDRDVLFYQDIQVNRKTREVSSGGRLVELTLKEFELLVYLLENQSRVVTRDELLNRI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + E + +D+ I LR+KL G I+TV G GY + Sbjct: 183 WGYEYDGETRTLDMHIRTLRQKLGEEGGA--CIKTVRGVGYRMV 224 >gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L + ++ + G + + + I+LD+ L G ++ Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ +++ D++ GL GADDYI KPF+ E+VAR++AI+RR+ Sbjct: 70 CRELR-SFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ G + LT E +++ + +++ L+ LY Sbjct: 129 DPHTPKG--LQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL A G++ I++++G GY L Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|310779970|ref|YP_003968302.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749293|gb|ADO83954.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 231 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + + K + + V G DG++ K ++ + +ILD+ L + G Sbjct: 1 MKVLIVEDDIEIQQLVGYFFKKDGYEVQFAGDGLDGLKFLKAFKPELVILDIMLPSLDGK 60 Query: 61 EVLRALR---VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 + +R + +L+ + IED + GL+ GA+DY+ KPF+ EL+ R + ++ Sbjct: 61 NFTKIVRELPDQYGDPIIIMLTAKTEIEDVLEGLELGANDYMKKPFDPRELILRAKKLIS 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G + + + V + L+ KEY ++ LL K L++E L+ Sbjct: 121 GEMRESKRVSFAGVVVDD-ERHLVTENDVEVELSKKEYDLLHLLFNNKGIVLSREKILDR 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + +D++I KLR KL + + I TV G GY L + + + E Sbjct: 180 VWQTNYYSGDRSVDIYISKLRDKLKSISKN---IRTVKGVGYKLEDRKEYSSKE 230 >gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 234 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDDK + ++L L+ E + V + + GE GI K D I+LDL + + G E Sbjct: 6 KVLIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLMMPILSGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ IL+ +K+ L GADDYI+KPF EEL AR+R +R + Sbjct: 66 VCKIIR-KTSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKKE 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +T + + +G I LT KEY ++ L L K +++E + ++ Sbjct: 125 FKTHNTITYENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + KI+DV+I LRKK+ N + YI TV G GY+L++ K+E Sbjct: 185 YDFEGKDKIVDVYINLLRKKIEN--KNEKYIHTVRGFGYILKKIIKNE 230 >gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 219 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L + L F V GE + A +LDLGL G Sbjct: 1 MRILLVEDDPLLGDGLRAGLTQAGFQVDWVRDGEAASRELRSAVHAAAVLDLGLPRKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A + PV +L+ ++ D+V GL SGADDY+ KP + +EL AR+RA++RR+ Sbjct: 61 EVLAETRRAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAARLRALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q L+ G++ ++ A+TV G + L+ +E+ ++ L L LT+E HLY Sbjct: 121 GQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTREQLEQHLYR 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V + LR+KL ++TV G GY+L Sbjct: 181 WGREVESNAVEVHVHHLRRKLGA-----ELVQTVRGVGYLL 216 >gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582] gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582] Length = 220 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + I + L FN+ G G + +DA+ILDL L I G Sbjct: 1 MRILLIEDDKIIGDGINVGLTKLGFNLDWFTDGVIGRQALTSAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R A PV IL+ ++E +V GLQ+GADDY+ KPF E+ AR++A++RR Sbjct: 61 DLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +V G L + A++V + G + LT +E ++ELL K L + + LY+ Sbjct: 121 GQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++V I LR+KL N I TV G GY L + Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGN-----GVIRTVHGVGYTLGD 218 >gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L+ + V G +EL + D I+LDL + + G+ + Sbjct: 4 ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63 Query: 63 LR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R A P+ +LS S DKV GL+ GADDYI+KPF+ ELVAR+ A +RR + Sbjct: 64 CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123 Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++I+ G L ++ + ++E+ G + +L KE++++ L+ + ++ Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + +DV I ++R+KL + YIET G GY E Sbjct: 184 LLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIE 233 >gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 242 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L L +N GE+ I + F ++LD+ + + G+E Sbjct: 21 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +++ D V+GL+ GADDY++KPF++EEL ARI A++RR+ Sbjct: 81 CKKIR-SFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 139 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q + + V V + LT E+ ++ L N L ++ + ++ Sbjct: 140 TQIQYH--GILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197 Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRE 223 E + +D I LR KL ++++TV+G GY + Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRWVD 239 >gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] Length = 220 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD+ + +++++ L + V G++ + +ILD+ L + G Sbjct: 3 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMNGH 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV +++ +S E+++R + ADDY++KPF + L+ R+ A++RRS Sbjct: 63 ELLREFR-KLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ L G L++ + V + LT KE++++ LL TL+ E+ L+ ++ Sbjct: 122 AVAKELHY-GKLTILPEDFNVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + I LR KL + I+TV G GY L E + Sbjct: 181 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 220 >gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 135/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+ G+ L FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLKRLRAE-KQTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ D+ ++L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RSIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ + A K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKV-DNAYDKKLIHTIRGMGYVLEDRS 223 >gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + + + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L +A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225 >gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325] gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325] Length = 238 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ + + + L+ E + V G+DG+E K+ ++ ++LD+ L + G Sbjct: 4 RVLVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDYSCVLLDVHLPMLNGKT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR +TPV I+S + + +V G + GADDY+ KPF+ EL+ R+ AI++R++ Sbjct: 64 ILAELR-KTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQRTKR 122 Query: 122 HAQSLIVTGDL--------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++++A V V+ I LT KE+ ++ L+ + + Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNAHKVIVEDSEIFLTPKEFDLLLFLAKSPDKAFKRTE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L ++D +++ +D I ++RKK+ + I TVWG GY Sbjct: 183 ILRAVWDYDFYTDLRTVDTHIKRVRKKIDKISPRVAKMIITVWGIGYKF 231 >gi|282901164|ref|ZP_06309094.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281193938|gb|EFA68905.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 511 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 1/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD +L ++ L + + V + GE G+E+ + +D I+LD+ + + G Sbjct: 1 MKILIVDDDTSLCQLVKTSLVAHRYLVDIATDGEMGLEMGYQFNYDLILLDILMPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + +++ ++ ED + GL +GADDY+ KP+ EL+ARIR+ RR Sbjct: 61 SLCHTLRDKGYQGQIIMVTAKTTQEDIIIGLDAGADDYLIKPYCIHELLARIRSCSRRIG 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I LS+N + V+ I+L+ +E+Q++EL T+ ++ L+ Sbjct: 121 TKSGLSILTHNKLSLNPELIEVKYDELSINLSRREFQLLELFLRHPQKIFTRGQIIDKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 D P + + LR KL A + IETV G GY L + E E + T Sbjct: 181 SIDDSPTDGAVTNLVKDLRGKLKKAGMQEEVIETVHGLGYRLTSKRELERVETIPT 236 >gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 279 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 53 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 113 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 171 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 172 SITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 231 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 232 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 275 >gi|226951189|ref|ZP_03821653.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244] gi|226838068|gb|EEH70451.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244] Length = 235 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ ++ L + G G E+D IILD+ L + G+ Sbjct: 9 MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLSGKHQALSEEYDLIILDVMLPKLDGW 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++ +R + + P+ LS IED+V+GL GADDY+ KPF EL+ARI++ + R Sbjct: 69 NIIYDIRKSGKTMPILFLSARDQIEDRVKGLDLGADDYLVKPFAFAELLARIKSLLRRGQ 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +LI DL ++L + V G RI LT KE+ ++EL R+ L + + + ++ Sbjct: 129 QKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D + + +++V I +LR K+ + I+ + G GYVL +D++ Sbjct: 189 DMNFDSDTNVVEVAIKRLRSKIDSNFS-PKLIQNIRGMGYVLE--VEDDS 235 >gi|154506023|ref|ZP_02042761.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149] gi|153793522|gb|EDN75942.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD L +E L E + + + E G +L K D I+LD L D GF + Sbjct: 4 ILIIEDDADLREGLEYTLSGEGYQILTAENAERGRKLWKTSSCDLILLDCNLPDGNGFSL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + + + + + D+V+ L+ G DDY+SKPF+ L ARI+ + SR Sbjct: 64 CSEIRKSSDVFILML-TARDTELDEVKALEMGVDDYMSKPFSIAVLKARIKKL--LSRKS 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I + + ++ + V + + L+ EY+++ L+KE L ++D Sbjct: 121 EKQWISSNGIRLDKSSCQVICKEEVLELSKIEYKLLLYFLENPGQILSKEQILERIWDKD 180 Query: 183 -DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + V I +LR+K+ +I+TV G GY+ RE K Sbjct: 181 GKFVDENTVSVNIRRLRRKIEADPQNPQWIQTVHGLGYIWREEEK 225 >gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC 25986] gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC 25986] Length = 250 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 7/238 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + L+ + + DA++LD+ L D G + Sbjct: 10 IYYVEDDDNIRDLTVYALRKQGIEAEGFSCDGEFKAAVARRVPDAVLLDIMLPDTDGLAI 69 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R LR + + P+ +L+ + DKV L GADDY++KPF+ EL +R RA++RR Sbjct: 70 MRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLRRGG 129 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ V GD+ ++ + V V G + LT +E+ ++E L + T+E L + Sbjct: 130 MVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLLQSV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + + + +DV + LR+KL A IETV G GY L E + + E +TA Sbjct: 190 WGWDFDGGSRTVDVHVQTLRQKLGEHASA---IETVRGVGYRLAEPSAGDGAEGDDTA 244 >gi|126738693|ref|ZP_01754398.1| DNA-binding response regulator [Roseobacter sp. SK209-2-6] gi|126720492|gb|EBA17198.1| DNA-binding response regulator [Roseobacter sp. SK209-2-6] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIEL-MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD+ L ++ +L +E+F+V+ D G+ +E K +D +ILD+GL D G Sbjct: 6 KILLVDDDEDLREALSEQLLMTEDFDVFEADSGQTAMERAKEALYDLVILDVGLPDTDGR 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + P+ +L+G S D + GL +GA+DY+SKPF L+ARIRA +R+ Sbjct: 66 ELCRLMRKQGVKAPILMLTGHDSDADTILGLDAGANDYVSKPFKFPVLLARIRAQLRQHE 125 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ V G + K + +I LT KE +++ L + + +++ L+ ++ Sbjct: 126 QSEDAVFVLGPYTFKPAMKMLLTEDDKKIRLTEKETNILKFLYRSNDGVVPRDVLLHEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I +LR+K+ + T G GY L Sbjct: 186 GYNAGVTTHTLETHIYRLRQKIEPDPSNARILVTESG-GYRLV 227 >gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 269 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ++ + + L+ E + + G+ ++ + + DA++LD+ L D+ G Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 164 ADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++++I LR+K+ AG + I T G GY+++ Sbjct: 224 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 266 >gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 244 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+D+ ++ + L ++ F V + + + D ++ D+ + G Sbjct: 8 RILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSVDLVVSDIMMPGEDGLS 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR S PV +L+ + +++ GL+ GADDY+ KPFN ELVARIR ++RR++ Sbjct: 68 LTRHLR-ETSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVLRRTQQ 126 Query: 122 HAQSLIVTGDLSV--NLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +SL G + + VE +G + L+ EY ++ L ++++ Sbjct: 127 NGRSLDAGGTCYAFGDWVLREVERVLVDGKGSEVALSSGEYHLLHALVRHPRQVMSRDRL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + + + ID + +LRKK+ ++TVWG GY L K Sbjct: 187 LDLVRGREADIFDRAIDNLVSRLRKKIEADPAHPQIVKTVWGGGYTLACEVK 238 >gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ F + D I+LD L G + Sbjct: 4 RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R R P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA++RR+ Sbjct: 64 LARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + V G L ++ A V + + EY+++ T+ L+H+ Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + G E + IDV I +LRK L G +N ++TV G GY A Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRFSSAA 229 >gi|258544229|ref|ZP_05704463.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826] gi|258520543|gb|EEV89402.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ LA S+ +L+ G + L +DA +LDLGL + G Sbjct: 1 MRILIVEDDRELAQSLANVLQEAGMIAETAHDGNEAAFLGSTETYDAAVLDLGLPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+G S DK+ G +GADDY++KPF EE+V R+RA++RRSR Sbjct: 61 SLLTHWREQGQTYPVLILTGRSRWSDKLAGFNAGADDYLTKPFLHEEVVLRLRALLRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G LS + + G R+ LT +E +++ L + T +++ L H+Y Sbjct: 121 GHADTTLHVGSLSYDTLQARFHLDGRRLTLTAQEERILAYLMHQPGTVVSRGEILEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229 +P+ +DV I ++R+KL + T+ GRG++L E KD+T Sbjct: 181 RDSDPDSNTLDVLISRIRRKLGV-----PLLHTIRGRGFMLAAETPKDDT 225 >gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585] gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585] Length = 232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L + V V G + +EL K D II D+ + + G+++ Sbjct: 5 ILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMDGYDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + ++ P ++ +S +DK+ GL GADD+I+KPF+ ELV R+ I R RG Sbjct: 65 ISEVQYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI G+L +N + V++ + LT K ++++ +L+ +K ++ Sbjct: 125 GETELISLGNLKMNHSSHEVQIGEEMLDLTVKSFELLWILASNPERVFSKTDLYEKIWKE 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224 + ++V I LR++L+ + + I+TVWG GY + + Sbjct: 185 DYVDDTNTLNVHIHALRQELAKYSSDQTPTIKTVWGLGYKIEKP 228 >gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88] gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88] Length = 234 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A I+ ++ + V G++G E K F +++D+ + ++ G Sbjct: 4 RILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMDGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ P+ I+S + KV+GL GADDYI+KPF+ EL AR+ + +RR R Sbjct: 64 LCKNIRL-TSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRR 122 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L + K VEV G IHLT KE++++ L++ T TK Sbjct: 123 YNGIENNEHILKFKRGLIIYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ +D + V I +LR+KL N+IETVWG GY Sbjct: 183 EILWGEKDVHGNNTVTVHIKELREKLKENIKNPNFIETVWGVGYKF 228 >gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 EV+R LR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 61 EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + GDL V+L + G RI LT KE+ ++ELL R+ L+K + + ++ Sbjct: 121 SLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +I+V I +LR K+ + + T G GY+L A+DE Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDF-EVKLLHTCRGMGYMLE--AQDE 226 >gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 231 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV +LS +S KV L GA+DY++KPF +E +AR+RA++R+ Sbjct: 67 LRELR-EWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G L+V+ + V ++G + LT KEY ++ LL+ +T++ L ++ Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + + LR+KL + +I T G GY L Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229 >gi|302873321|ref|YP_003841954.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688511|ref|ZP_07630957.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576178|gb|ADL50190.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED+K + I +L + V G +GI K +D I+LD+ L G E+ Sbjct: 4 ILLIEDNKDVNRMISEVLFDAGYQVKSAYTGIEGINEIKNSNYDLILLDIMLPYKSGDEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R TPV ++S + K+ L+ GADDYI+KPF+ E++ARI A +RR Sbjct: 64 LKEMR-NFSDTPVIVISAKDMVGTKIDILKLGADDYITKPFDLGEVLARIEATLRRCHKQ 122 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I D+ ++ ++K V V G I LT KEY ++E+L + TK ++ Sbjct: 123 VHINKVIKYKDIVLDDNSKHVSVNGVEIELTAKEYMILEMLIKYQGKVFTKANLYESIWK 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + LR KL A + YIETVWG GY L Sbjct: 183 EEYLGDDNAVKTHVSNLRSKLQKANEHEKYIETVWGLGYRL 223 >gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A+ + S+NF + GE+G Y++D ++DLGL + G Sbjct: 1 MKMLIVEDEAAIRQQLTDYFSSQNFVIDAVADGEEGAWQAVEYDYDFAVIDLGLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R LR A PV IL+ +DKV GL++GADDY+ KPF+ EEL AR A++RR+ Sbjct: 61 EIIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G ++++ K V V I LT EY +E L+L ++K HLY Sbjct: 121 GSATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLYH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +I+VFI +LRKKL I T+ G+GY A Sbjct: 181 QDFERDSNVIEVFIGRLRKKLDPD-NQLKPISTIRGQGYRFTVEA 224 >gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++A L+ +F V + G +G+E E+ I+LDL L D+ GFE Sbjct: 3 KILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLMLPDMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K P+ +++ + DK+RGL G DDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQIR-EKKDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISRYER 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I L ++ + V V T KE+ ++ L+ N +K+ Sbjct: 122 LVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFTNKEFDILCFLASNPNKVFSKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ ++ + V I K+R+K+ YIETVWG GY R Sbjct: 182 SKIWNMDSIGDIATVTVHIKKIREKIEFDTSNPQYIETVWGVGYRFR 228 >gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 253 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 121/242 (50%), Gaps = 9/242 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD A+A + + L+ ++V G G L D IILDL L + GF Sbjct: 4 RILVIDDDPAIAELVAINLEMAGYDVAQATDGIKGQALAVQLLPDLIILDLMLPKVDGFT 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ +S +DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 64 ICQRLRRDQRTADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 123 Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ G L++ + V I LT E++++ L R T++ Sbjct: 124 DRIPQAARHSEILSYGPLTLVPERFEVLWVDKVIKLTRLEFELLHCLLQRHGQTVSPSEI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDETCEY 232 L ++ +++ I V + LR KL YI+TV+G GY L A+ E E Sbjct: 184 LQEVWGYDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPHTAEAENAEA 243 Query: 233 LE 234 Sbjct: 244 TN 245 >gi|90021593|ref|YP_527420.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89951193|gb|ABD81208.1| Heavy metal response regulator [Saccharophagus degradans 2-40] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ++ L F V + G DG L FD +ILD+ L D+ G+ Sbjct: 1 MRLLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 +++++R + PV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R + R + Sbjct: 61 RIVQSIRESGCQAPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL ++L G +I+L+ KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV I +LR K+ + I TV G GY L + +DE Sbjct: 181 DMNFDSDTNVIDVAIRRLRSKI-DEGFEPKLIHTVRGMGYKL--DVEDE 226 >gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L+ E ++V VT+ G + +E D ++LDL L +PG E Sbjct: 3 RILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR PV +L+ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRQLRTRSSV-PVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ + G + +++D V V+G R+ L KE++++ELL LT+ ++ + Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + K +DV + +LR K+ ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGYKFE 225 >gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +EDD + + L++ G +E F + ++LD+ L G E+ Sbjct: 2 IFCVEDDDNIRELVIYTLETTGLEARGFADGTAFMEALAFDTPELVLLDIMLPGEDGLEI 61 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L+ L+ PV +++ S DKV GL SGADDY++KPF EL++RI+A+ R Sbjct: 62 LKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIKAVLRRSG 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + G +S++ V+V G ++ LT KE++++E L + LT++ L ++ Sbjct: 122 KQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRDQLLTEIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I LR+KL ++TV G GY + A Sbjct: 182 GYDFDGETRTVDVHIRTLRQKLGEQGS---LVKTVRGVGYRIGGEA 224 >gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR +ST V +++ +E+KV+GL+ GADDY+ +PF EL+AR+R + R Sbjct: 61 EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 219 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F++ G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL + +I TV G GY L + Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGS-----EFIRTVHGIGYTLGD 218 >gi|187933012|ref|YP_001886059.1| ResD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721165|gb|ACD22386.1| transcriptional regulatory protein ResD [Clostridium botulinum B str. Eklund 17B] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL++D+K + ++ L E F + G I +D +ILD L DI G Sbjct: 2 INILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPDISGE 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV +R P+ +L+ ED++ G + G DDY+ KPFN +EL+ R+++I++R Sbjct: 62 EVCNHIRNKSDV-PIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSG 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +N + V V+G +I LT EY+++ L++ ++E L + Sbjct: 121 KIDFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E ++ID I LR+K+ + I+T++G GY Sbjct: 181 IEEYYEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRFE 224 >gi|332308855|ref|YP_004436705.1| two component heavy metal response transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176184|gb|AEE25437.1| two component heavy metal response transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 225 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ I+ L F V + G DG E++ IILD+ L DI G+ Sbjct: 1 MKILVVEDETKTGDYIKQGLAESGFVVELVRTGLDGHHKAMLGEYELIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +LR + TPV L+ + D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 KILSSLRESNNHTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL +++ ++ G I+LT KE+ ++EL+ R+ L + + + ++D Sbjct: 121 SVPNNILHIADLELDIPSRIATRSGRTINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +IDV I +LR K+ + I+TV G GY + N Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFSL-KLIQTVRGMGYKMCSNE 224 >gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L+ ++ + D I+LD L G E+ Sbjct: 5 ILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWMLPGTSGLEL 64 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 R R P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA + R Sbjct: 65 ARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMRRSR 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G+L ++ A V + + EY+++ + ++ L+H++ Sbjct: 125 EDDEDGSVAAGNLRIDGAAHRVFAGDAPVAIGPTEYRLLHFFMTHPDRVYSRAQLLDHVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G E + IDV I +LR+ L G ++TV G GY A Sbjct: 185 GGSVYVEERTIDVHIRRLRRTLEP-FGADGMVQTVRGAGYRFSAAA 229 >gi|290962001|ref|YP_003493183.1| two component positive transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260651527|emb|CBG74650.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 242 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ ++ L+ + V ++ + + + + I+LD+ L D G E Sbjct: 18 RLLVVDDEPAILDTVGRFLRFIGYEVRTAATVKEALAEARDHLPELILLDIMLPDGDGIE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR + V L+ + +D V+ L +G DDY++KPF +E+ ARI A++RR+R Sbjct: 78 VMRRLRADGLPHAVVFLTARDTRKDLVKALAAGGDDYVTKPFGLDEVAARIGAVLRRTRR 137 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 DL ++ +V G I L+ E++++ L L + + L H++ Sbjct: 138 PEHESSVLRVADLELDPATHSVRRGGTAIGLSPTEFRLLRYLMLHSGRIVPRAQLLEHVW 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ +I LR+KL A G I T G GY +RE Sbjct: 198 SYDFNGDDTVVATYISYLRRKL--DALGPPLIHTQRGIGYAIREPG 241 >gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] Length = 258 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ + I L L S+ F G + + + + D I+LDL + + G + Sbjct: 33 KILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGLD 92 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + L+ + P+ IL+ S D++ GL+ GADDYI+KPF+ EL+ RI++I+RR Sbjct: 93 VCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRRR 152 Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ K + +I LT E++++ L R+ ++E L Sbjct: 153 LEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQLLK 212 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + ID I +LR KL A+ Y+ TV G GY ++ Sbjct: 213 EVWGYDKTVDTRTIDTHIRRLRDKLGRAS---QYLRTVRGIGYRFKK 256 >gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp] gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp] Length = 245 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E + + V + E L F+ ++LDL L G Sbjct: 13 KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR + P+ +L+ +++GL+ GADDY++KPFN EL+ARI+A++RR Sbjct: 73 ACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQVP 132 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G+ ++L + ++ LT E+ +++ L LT++ Sbjct: 133 VVPGAPGTEDESVSFGEYELSLATRELKKGDQVHMLTTGEFAVLKALVQHAREPLTRDKL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N + + IDV I +LR+ + YI+TVWG GYV + Sbjct: 193 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 243 >gi|58580811|ref|YP_199827.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425405|gb|AAW74442.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 249 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +L I L+ + V G + + D +ILDLGL + G Sbjct: 18 MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGI 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R R + TP+ +LS D+ GL GADDY+ KPF+ EL+AR RA++RRS Sbjct: 78 GVIRTARARAVDTPILVLSARERAADRALGLDVGADDYLGKPFDTNELLARTRALLRRSA 137 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G L ++ +V G + LT +E+ ++ LL ++ + +E HLY Sbjct: 138 GRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYG 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +DV + +LR+KLS A I T+ G GY L E Sbjct: 198 WDEDVASNAVDVHVHQLRRKLSAA-----VIRTIRGIGYALDE 235 >gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 236 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD LA +E L + +++ ED +E FD ++LD+ L + GFE+ Sbjct: 6 ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFEL 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117 R +R ++ P+ +++ D++ G + G DDY+ KPF+ EL RIRA R Sbjct: 66 CRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G + L+ GDL ++L V + G + +T E++++ L RK ++E L+ Sbjct: 126 RQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++D + ID I ++R+KL I+TV G GY E D+ E Sbjct: 186 VWDVDKSINTRTIDTHITRIREKLGETG---RMIKTVRGLGYKFEEKESDDHAE 236 >gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 6/221 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED+ A+A I + L+ F + GE D ++LD L G + Sbjct: 2 LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWMLPGASGLTLA 61 Query: 64 RALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R R + P+ +L+ D+V GL +GADDY++KPF+ +E++ARIRA++RR Sbjct: 62 RRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRRAP 121 Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ V + L E++++ L ++ L+ ++ Sbjct: 122 EQAAVTLEAGRLKLDTATHRVSYDEQLLKLGPTEFKLLHYLMSHAERVHSRGQLLDKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LR+ L AA IETV G GY L Sbjct: 182 DHVFIEERTVDVHIKRLREALGAAA---PMIETVRGAGYRL 219 >gi|307709530|ref|ZP_07645985.1| response regulator [Streptococcus mitis SK564] gi|307619723|gb|EFN98844.1| response regulator [Streptococcus mitis SK564] Length = 218 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 103/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ +E YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYKDAKV-DFESYSASLAGEEVPINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 226 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A + L+ ++ + + + G +G+++ +EF++IILD L + GF Sbjct: 1 MRILVVEDDRKMALVLRDALEKQSHRIVLANTGLEGLDIASSHEFESIILDAMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R+LR AK+STP+ +L+ + D VRGL SG DDY++KPF EL AR+RA+ RR+ Sbjct: 61 TVARSLRDAKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A DL ++ G I LT E+ ++E + +T L +E +N ++ Sbjct: 121 ATASLSYQLEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +D F+ +LR K+ G I TV G GY L Sbjct: 181 YEHTVENNTLDAFMKQLRSKVDEGHGN-KLIHTVRGFGYKL 220 >gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI KPF EEL+ RIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 250 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + D IILD+ L DI GF V Sbjct: 14 IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 74 TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 133 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA---------GGKNYIETVWGRGYVLREN 224 + I++ +I LRKK+ + IET G GY++R Sbjct: 194 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIRAP 246 >gi|187923506|ref|YP_001895148.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187714700|gb|ACD15924.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 227 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G G ++D I+LD+ L G+ Sbjct: 1 MRILIVEDEIKTGTYLRKGLTEAGFIVDWVEDGLTGQHRALTEDYDLIVLDVMLPGQDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ST V +L+ ++DKVRGL G DDY+ KPF+ EL+AR+R+I+RR + Sbjct: 61 TVLKNLR-RTHSTSVLLLTARDEVDDKVRGLNMGGDDYLVKPFDFAELLARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +L ++L + G I LT KE+ ++ LL R+ L + + ++D Sbjct: 120 TRDAASLQVANLVLDLTRRKATRHGDMILLTAKEFALLWLLMRRQGEILPRSTIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + ++D I +LR K+ + I TV G GYVL E + Sbjct: 180 MNFDSDTNVVDAAIRRLRAKVDDN-YEPKLIHTVRGMGYVLEERGPSQP 227 >gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 233 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + G +G+ L +ILD+ + DI GF Sbjct: 4 VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R + PV +L+ + +DKV GL+ GADDY++KPF+ EL+AR+ +++RR Sbjct: 64 QVLKKIR-ETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I+ + ++ + V + + LT KE+ ++ L+ K TK+ Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + I FI KLRKK+ YI TV G GY + A Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233 >gi|73749211|ref|YP_308450.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660927|emb|CAI83534.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 223 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD LA I L+ + V G+ G E+ Y FD IILD+ L +I GF Sbjct: 1 MKLLLIEDDTNLAKVITSGLEENGYVVNWESDGKLGAEMALAYTFDVIILDIMLPEINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R TPV +L+ +D+VRGL GADDY+ KPF+ EL+AR+RA++RR+ Sbjct: 61 SVCKKIRTEGNQTPVIMLTARYQEDDRVRGLDCGADDYLVKPFSFPELLARLRALLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I L++N + V I T KEY ++E L L KN +TK M H+++ Sbjct: 121 NQHSPSIKLRKLTLNTVDRRVFYDDKEIEFTAKEYGILEYLVLNKNCIITKNMIEEHIWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+V I ++RKKL N I+TV G GY++ + Sbjct: 181 SESDIFSNVIEVLISRIRKKLDNNNKNS-LIKTVKGLGYIIED 222 >gi|39933435|ref|NP_945711.1| two-component transcriptional regulator ChvI [Rhodopseudomonas palustris CGA009] gi|192288792|ref|YP_001989397.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|316931661|ref|YP_004106643.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|39647281|emb|CAE25802.1| two-component transcriptional regulator ChvI, winged helix family [Rhodopseudomonas palustris CGA009] gi|192282541|gb|ACE98921.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|315599375|gb|ADU41910.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 233 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 114/230 (49%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + + G ++ + D ILD+ + + G E Sbjct: 4 IALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTPPDLAILDIKMPRMDGMET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++A++RR Sbjct: 64 LRRLR-QKSDLPVIFLTSKDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSAPK 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + G L ++ + T + + LT E+ +++ L+ R ++ Sbjct: 123 DPAAAPKENDAKALDRGPLRMDPERHTCTWKNEPVTLTVTEFLILQALATRPGVVKSRNA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY +E Sbjct: 183 LMDAAYDDQVYVDDRTIDSHIKRLRKKFKAVDDEFEMIETLYGVGYRFKE 232 >gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 265 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 17/250 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + V I L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--------------AK 226 +E I+V++ +LRKK+ + I TV G GY L + ++ Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEKAAPPANANAPAAPAGSE 237 Query: 227 DETCEYLETA 236 +T + +TA Sbjct: 238 SQTAQAAQTA 247 >gi|229060536|ref|ZP_04197897.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228718780|gb|EEL70404.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 224 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D++ + ++ + E F V + GE+ +++ + D ILD + G Sbjct: 10 MKVLIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKSSGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 70 TVCQEIKKNSSVK-VLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA-----KKL 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL ++ V + +T E Q+I+ K T LT++ L+ ++ Sbjct: 124 VQHEDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +D + +LRKK+ I+T G GY L E Sbjct: 184 FDYFGEERTVDTHVRRLRKKIGEN-----IIKTHRGLGYSLEEE 222 >gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 252 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 5/220 (2%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD + + LK+ F V G + + + D ++LD L + G EV R Sbjct: 2 VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLEVCRR 61 Query: 66 LRVAKISTPVC--ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122 +R +PV +L+ + ED+V GL +GADDY++KPF+ ELV R+RA++RR+ Sbjct: 62 IRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVPEA 121 Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + V G ++L A+ + G + LT +E+ ++ L ++ L ++ Sbjct: 122 VPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRSVWGW 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V + +LR+K+ + TVWG GY Sbjct: 182 E-IGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 220 >gi|206971849|ref|ZP_03232798.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229151075|ref|ZP_04279283.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|206733234|gb|EDZ50407.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228632386|gb|EEK89007.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 215 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D++ + ++ + E F V + GE+ +++ + D ILD + G Sbjct: 1 MKVLIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKHSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 61 TVCQEIKKNSSVK-VLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I D+ +N V + +T E ++I+ K T LT++ L+ ++ Sbjct: 115 IQHDNIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D + +LRKK+ I+T G GY L E ++ Sbjct: 175 FDYFGEERTVDTHVRRLRKKIGEN-----IIKTHRGLGYSLEEQSE 215 >gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D++ +A +E+ LK+EN++V V G ++ + + +D ILD+ L D+ GF Sbjct: 1 MNILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVMLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R K + P+ +L+ DK+ GL GADDY++KPF ELVAR++A +RR + Sbjct: 61 TICKTIR-QKHTWPIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRRYK 119 Query: 121 GHAQSLIVTGDL----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +N D + + LT E++++ L R+ ++ + Sbjct: 120 RYNVQQKAQELSYLGLVMNRDLHICRLNEKDVFLTPIEFRILWYLCERQGKVVSAKELYT 179 Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + V I +R+K+ + YI+ VWG GY L ++ Sbjct: 180 AIWQEEYLTSSNNTLMVHIRHIREKMHDRGEHPRYIQNVWGVGYKLGDS 228 >gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica] Length = 229 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + D ++LD + G + Sbjct: 4 RILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGSGLQ 63 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVAR++A++RR Sbjct: 64 IIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLRRI 123 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I L +++ + V Q + + E++++ ++E LN++ Sbjct: 124 SPMMIENLIEMDGLILDITSHRVTSQDQVLDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGANVYVEDRTVDVHIRRLRKVLE-VGGHDKMVQTVRGTGYRF 225 >gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756] gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756] Length = 240 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +++++D+K + +SI +LK E + V G + + L + D I+LD+ + + G Sbjct: 12 VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR K PV ILS + DKV GL GADDY+ KP+N EL+AR++A +RR R Sbjct: 72 LMKLR-EKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 130 Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I+ G L ++ + V V+G + LT EY+++ELL + E Sbjct: 131 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 190 Query: 176 NHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + V I +R+K+ A Y++ VWG GY + + Sbjct: 191 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKMEK 239 >gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 254 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +A + + + V V G +EL D ILD+ L D+ G + Sbjct: 32 RVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGTAGRPDLAILDVMLPDMDGLD 91 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE--LVARIRAIVRRS 119 VL LR P L+ + ED+V GL +G DDY++KPF+ EE + A Sbjct: 92 VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++V GDL +N V G I LT +Y +++ L T L+KE L ++ Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 I++++I LRKK+ A I T+ G GYV+R Sbjct: 212 GYDFGGRANIVELYISYLRKKI--DADRDPMIHTIRGAGYVIRP 253 >gi|17549417|ref|NP_522757.1| two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431670|emb|CAD18347.1| probable two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 245 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 6/240 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + F V V G+ + ++LDL + + G Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 LR LR PV +L+ S D++ GL+ GADDY+ KPF+ EL+ARI A++RR + Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N +T+ H + ++ E+ +++LL LT+E + Sbjct: 125 VAPAAPEDRDSFSFGPFRLNFRMRTLFRGEHALSISDTEFALLKLLVTHAMQVLTREHIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +Y + IDV + +LR+ L A YI+TV GRGY + +D E Sbjct: 185 ELMYGPGSSVSDRGIDVQVWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERDAHDEVQSP 244 >gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Pseudonocardia sp. P1] Length = 225 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A ++ L + F V V G + FD ++LD+GL + GF+ Sbjct: 4 RILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLPGMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRSR 120 VLR LR A + PV IL+ S+ D V GL GADDY++KPF EEL+AR++ + R Sbjct: 64 VLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERARP 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ + V + GH + L+ +E+ + E L+++ L ++ Sbjct: 124 APDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVWG 183 Query: 181 GRDEP---EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++DV++ LR+KL ++I TV G GY L Sbjct: 184 SEYSAAATSSNVVDVYVRYLRRKLG-----PDWIATVRGAGYRLEP 224 >gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+KA+ I++ L E + V GE+ + D I+LD+ L G++ Sbjct: 4 KILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIMLPKKNGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V K+ TP+ +L+ + I DKV GL+ GADDY++KPF+ EL+ARI+A +RR++ Sbjct: 64 V-CKEIQQKLDTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRRAKK 122 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G L + D + V++ H IHLT KE+ ++ LL+ ++ L Sbjct: 123 ITNADMQSAKIINGPLCIIPDERIVKLDDHEIHLTPKEFDLLLLLASHLEQVFPRDELLK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +D+ I ++R+K+ I+TV+G GY +R+ Sbjct: 183 EIWGYDYYGDTRTVDMHIQRIRRKIDIHPN--KLIQTVFGIGYKMRK 227 >gi|313633173|gb|EFS00056.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL N1-067] gi|313637755|gb|EFS03112.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL S4-171] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ IE+ E + G+ G E +FD I+DL L ++ G Sbjct: 1 MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYETFLKEDFDIAIIDLMLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 TICRKIR-EVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ + + QG + LT KE+ ++ L ++E Sbjct: 120 SATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I +LR+K++ ++ T+WG GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKIATDTK--PFLHTIWGVGYKFDE 226 >gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] Length = 238 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D++ + + + L+ E + V G DG+E K+ ++ ++LD+ L + G Sbjct: 4 RILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLNGKS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR +TPV I+S + + +V G + GADDY+ KPF+ EL+ RI AI++R++ Sbjct: 64 ILSELR-KTKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQRTKR 122 Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L +++++ V V + LT KE+ ++ L+ + + Sbjct: 123 SVFYTPELYAKDVLVFPGLIIDVNSHKVIVDDTEVLLTPKEFDLLLFLAKSPDKAFKRNE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L ++D +++ +D I ++RKK + I TVWG GY Sbjct: 183 ILRAVWDYDFYSDLRTVDTHIKRVRKKFDKISPIVAQMIVTVWGIGYKF 231 >gi|170749494|ref|YP_001755754.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656016|gb|ACB25071.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 13/233 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + + G ++ + D I D+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALETEGYRIQTYTDGASALDGLRHSPPDLAIFDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR K PV L+ D++ GL+ GADD+I KPF++ LV R++A++RR Sbjct: 64 LRRLR-QKSDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAVLRRFAKE 122 Query: 123 AQSLIVTGDLS------------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A G+ ++ + T +G + LT E+ +++ L+ R + Sbjct: 123 APGGTPRGEAEVAARSLERGALMMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ YD + + + ID I +LRKK + IET++G GY +E Sbjct: 183 RNALMDAAYDDQVYVDDRTIDSHIKRLRKKFKVTDQSFDMIETLYGVGYRFKE 235 >gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 226 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 9/230 (3%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILL+EDD + I K E ++V+ + G +EL + D I+LD+ + ++ Sbjct: 1 MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+ V R +R K P+ +++ + ED++ G + GAD+Y++KP + LVAR A+++R Sbjct: 61 GWSVCRRIR-EKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKR 119 Query: 119 SRGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G+LSVN +A TV V G I+L+ KEY ++ L L+++ L Sbjct: 120 TERTVGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYIL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N ++ +++ +D I KLR KL +A I TV GY A Sbjct: 180 NAVWGYEYLGDLRTVDTHIKKLRAKLGDAG---KLIATVIRSGYRFESEA 226 >gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 117/229 (51%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ A + L E F V ED + + IILD L G Sbjct: 1 MRILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR +I TPV +L+ ++ D+VRGL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TFCEELRKREIRTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRRAE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++ ++ V G + LT KEY ++ELL R +++ ++ Sbjct: 121 QARPAMLSVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWR 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +IDV I LR+K+ + G I TV G G+ L + Sbjct: 181 TGLIALDNLIDVHISNLRRKV-DPPGVPPLIRTVRGCGFSLAAADSESP 228 >gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 237 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 16/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L +EDD + + +L L+ F V G G+E + D +LD+ + + G Sbjct: 12 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVPGMDGVS 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV +LS + D V GL++GADDY++KPF+ LVAR+RA++RR Sbjct: 72 LCRRIRDESTV-PVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 130 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + GDL V+ + V +G RI LT E +++ S T L++ Sbjct: 131 AGGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLSR 190 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L ++D + +++DV + +LR K+ IETV G GY LR Sbjct: 191 DQLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLR 236 >gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758] gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758] Length = 226 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I +ED+ + + L++ F + G E + I+LD+ L G E+ Sbjct: 2 IFCVEDEANIRELVVYTLETTGFEARGFEEGTSFFEALAEELPELILLDIMLPGEDGMEI 61 Query: 63 LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 L+ L+ PV +++ + DKV GL +GADDY++KPF ELV+RIRA+ R S Sbjct: 62 LKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLRRTS 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V G++ ++ V V G + LT KEY+++ L +N LT++ L ++ Sbjct: 122 KKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLEEIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +DV + LR+KL A YIETV G GY + E Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGQAG---EYIETVRGVGYRIGE 222 >gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD+ LA I+ L+ E F V V E + +FD I+LD+ L + GF+ Sbjct: 3 KILLVEDDETLAMGIKYALEQEAFLVEVATELESARKRIDEKDFDLILLDVMLPNGNGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ L+ + V GL+ GADDYI+KPF +ELVARIRA +RR G Sbjct: 63 LCKEIRT-YSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + +++ + + V+ HLT E++++ L LT++ L +++ Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181 Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + D + + V I KLR+K+ + +I TV G GY RE Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIEDDPSKPEHILTVRGLGYRWRE 226 >gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163] gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673] gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163] gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI L+EDDKA+A ++ L+L+SE F V + + FD ++D+ L D GF Sbjct: 3 RIFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEASAMLAGNLFDLALVDIALPDGNGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++ + PV L+ V GL GADDYI+KPF EL+ARIRA +R+ Sbjct: 63 VCTEIK-ERYQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAALRKQER 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q+ V G + + V G I L+ EY+++ + +T+ L+ L+D Sbjct: 122 AGQAFEVCGLCV-DTASGVVTKYGREIFLSALEYRLLLIFMNNPKNIITRSRLLDELWDA 180 Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V+I +LR+K+ N I TV G GY L Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENDPANPQIILTVRGTGYRL 221 >gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++DDK + +++ +K+E + G++ + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVVREVRKDSEL-PILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRS 119 Query: 120 RGHAQSLIV----TGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G L++N D+ V + G + LT E+ ++ LL+ N + + Sbjct: 120 EKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225 >gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L L +N GE+ I + F I+LD+ + + G+E Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +++ D V+GL+ GADDY++KPF++EEL ARI+A++RR + Sbjct: 64 CKKIR-SFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRR--TN 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I + + V V + LT E+ ++ L N L+++ + ++ Sbjct: 121 QHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180 Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRE 223 E + +D I LR KL N+++TV+G GY + Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRWVD 222 >gi|150017695|ref|YP_001309949.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904160|gb|ABR34993.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ +L ++ ++ E F V+ +E K A+ILD+ L D GF Sbjct: 8 KILIVDDELSLLTMVKDIMLKEGFQTVFTASNCHMAMEKFKEVNPHAVILDVMLPDGDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR+ + PV LS E+++ GL GADDY++KPF EL+ R+ AI+RR+ Sbjct: 68 SLIQKLRM-ISTVPVLFLSARDEDENRLLGLGLGADDYMTKPFLPRELILRLNAILRRTY 126 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G++ +++++ TV+ Q + LT KEY +++ L K +T + Sbjct: 127 NSTIVKPEEKPTFYLGNIFIDMNSGTVKKQEEELTLTAKEYALLDKLYSNKGNIVTIDAL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + V I +LR+K+ Y+ TV G GY L + Sbjct: 187 CKAVWNDNFFGYENTLMVHIRRLREKIETEPSHPKYLLTVRGLGYKLVPEVQ 238 >gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R + PV +LS +S KV+ L +GA+DY++KPF +E +ARIRA++R++ G Sbjct: 67 LSEFR-EWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+V+L + V + G + LT KEY ++ L+ +T++ L ++ Sbjct: 126 EKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + LR+KL++ +I T G GY L Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R + PV +LS +S KV+ L +GA+DY++KPF +E +ARIRA++R++ G Sbjct: 67 LSEFR-EWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+V+L + V + G + LT KEY ++ L+ +T++ L ++ Sbjct: 126 EKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + LR+KL++ +I T G GY L Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L + ++ + G + + + I+LD+ L G ++ Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ +++ D++ GL GADDYI KPF+ E+VAR++AI+RR+ Sbjct: 70 CRELR-SFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ G + LT E +++ + +++ L+ LY Sbjct: 129 DPHTSKG--LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL A G++ I++++G GY L Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL 200] gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL 200] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L+ + V + GE G++ ++D +ILD+ L I G+E Sbjct: 3 RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R+ K P+ ++S DK++GL GADDYI KPF+ E+VAR+ A + R Sbjct: 63 ICKQVRLEKDI-PILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 HAQSLIVTGDLSV------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D + A+ V V G + LTGKE+ ++ ++ N +K+ Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V + +R+K+ K+YI T+WG GY Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIGTIWGVGYRF 227 >gi|228991673|ref|ZP_04151613.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228767996|gb|EEM16619.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ +D++ + ++ + E F V + GE+ +E+ + D ILD + G Sbjct: 1 MRVLIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALEIFYEVKIDLAILDWMMPKRNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 61 TVCQEIKKNSSVK-VLMLTAKSENEDELVALQSGADEYVKKPFHPGILLTRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +L ++L V + +T E ++I+ K T LT+E L+ ++ Sbjct: 115 LNQDEVIQVQNLKIDLIKNKVYKSDKELEITKTELELIKCFLNHKGTILTREKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +D + +LRKK+ I+T G GY L + + Sbjct: 175 FDYFGDERTVDTHVRRLRKKIGED-----IIKTHRGLGYSLEDERE 215 >gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] Length = 280 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 58 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 117 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK + PV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 118 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 176 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L ++G ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 177 ALNSTLEISGL-RMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 235 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR K+ + + I T+ G GY Sbjct: 236 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 276 >gi|297156215|gb|ADI05927.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +++ L++ + V V G G+ + + + AI+LD+ L + G+ Sbjct: 1 MRLLVVEDEEGLAIALKRGLEAAGYAVDVAHDGLIGLHMARQNPYQAIVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR I TP+ +L+ + D+ L +GADD+++KPF+ L AR+RA++RR Sbjct: 61 RVCARLRAEDIETPILMLTAKNGEYDEAEALDTGADDFLAKPFSYVVLEARLRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ GDL ++ ++ + LT KE+ ++E L+ R + K ++ ++ Sbjct: 121 ARTRTVLRIGDLWIDPAGRSSGRGDVQFRLTAKEFAVLECLARRAGEVVPKIDIVDQVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ I++V++ LR+K+ + G+ IETV G GY + Sbjct: 181 ADFEGDLNIVEVYVSALRRKI-DTPFGRASIETVRGIGYRM 220 >gi|229145440|ref|ZP_04273826.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228638016|gb|EEK94460.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] Length = 215 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D++ + ++ + E F V++ GE+ +++ + D ILD + G Sbjct: 1 MKVLIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWMMPKHSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 61 TVCQEIKKNSSVK-VLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I D+ +N V + +T E ++I+ K T LT++ L+ ++ Sbjct: 115 IQHDDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D + +LRKK+ I+T G GY L E ++ Sbjct: 175 FDYFGEERTVDTHVRRLRKKIGED-----IIKTHRGLGYSLEEQSE 215 >gi|332976862|gb|EGK13686.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)] Length = 238 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ LA + L +V + G I + D ++LD+ L G Sbjct: 11 RILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +P+ +L+ + D+V GL+ GADDY++KP L+ARIRA++RRS Sbjct: 71 VCREVRP-HYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+L ++ ++V + G + T EY ++ LL+ L++E Sbjct: 130 APSEEVPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L + + + IDV I ++R K+ + I+TV +GY+ + Sbjct: 190 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+E ++ ++ IE+ L E + V + G + +E + E+ I+LD+ + + G E Sbjct: 5 KILLVEYEEQMSMFIEMELTHEGYKVDIVYDGREALEKVENTEYQLILLDIMIPGLNGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V R +R P+ +L+ S + DKV GL GA+DY++KPF EEL+ARIR R Sbjct: 65 VCRRIR-QFSCVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKLV 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ ++ V G I LT KEY ++E L + KN LT+E + ++ Sbjct: 124 KSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DVFI LR K+ N + I T+ G GYV+++ Sbjct: 184 YDYVGDTNVVDVFIRYLRSKIDNDSKE-KLITTIRGVGYVIKD 225 >gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 4/230 (1%) Query: 1 MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR I+++ED+ A++ + +K + V GE +E + I+LD+ L + G Sbjct: 1 MRTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVMLPGLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +EVLR +R PV +L+ I D++ GL SGADDYI KPF E++ARI+AI+RR Sbjct: 61 WEVLREVRNRSTC-PVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRRP 119 Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G L ++ +++V + G + LT K+ ++ L+ N +E + Sbjct: 120 SHALITDHQKQYGSLRIDFKSRSVSLNGETLSLTPKDLALLLFLAEHPNQIFHREQLIER 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + + +D I +LR+ L I T+ G GY N D Sbjct: 180 VWGIDYDGSDRAVDHAIKRLRQSLHPMPPEDGGIRTLRGTGYQFYANGAD 229 >gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685] gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685] Length = 220 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + + EN+ + L + ++ IILDLGL D+ G Sbjct: 1 MKILIVEDDTLIQQGLAQAMGRENYACDCAGSAAEANGLLQSGQYSLIILDLGLPDMDGG 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I+TPV IL+ ++ ++V GL +GADDY+ KPF EL+AR RA++RR + Sbjct: 61 SALRQWRRDGIATPVLILTARDTVGERVAGLDAGADDYLVKPFALAELLARTRALIRRMQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ ++ ++L V + +T KE+ ++ L R T+++E+ LY Sbjct: 121 GLCDNILQVDNIRLDLSNHQVSCNNQALEVTPKEFTILARLMTRAGQTISREVLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +DE ++V I LR+KL I+T+ G GY L + Sbjct: 181 WQDELSSNSLEVHIHNLRRKLGR-----ERIKTLRGVGYRLEK 218 >gi|300780103|ref|ZP_07089959.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534213|gb|EFK55272.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 259 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 33 RVLVVDDEQPLAQMVASYLIRAGFDTRQAYTGTQAVDEARRFSPDVVVLDLGLPELDGLE 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R + + + + +DK+ GL GADDYI+KPF ELV R+ A++RR R Sbjct: 93 VCGRIRTFSDCYILML-TARGTEDDKITGLTLGADDYITKPFGIRELVTRVHAVLRRPRT 151 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 VT G+L+++ A V+V + LT E++++ L+LR LT+ + Sbjct: 152 STIPPQVTTPLTVGELTIDPAAHKVQVGEVVVDLTRTEFELLVTLALRPGQVLTRHDLVT 211 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +IETV G GY Sbjct: 212 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIETVRGVGYR 255 >gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + + ++LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLPGGSGLQ 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ PV +L+ ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + H + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L +G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225 >gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ LA+ + LK+ F + D G I+ K D IILD+ L + GFE Sbjct: 4 KILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVMLPNKDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + + P+ +++ D++ GL+ GADDYI KPF+ EL+AR++AI RR Sbjct: 64 ICREIR-SFSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNF 122 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ ++ + G +HLT E++++++L T+ ++ +Y Sbjct: 123 KDDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMYP 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ID I KLRKK+ + K I +V+G GY Sbjct: 183 DNRIVSDRTIDSHIKKLRKKIKEISPEKEVIYSVYGAGYKFE 224 >gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R] gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium glutamicum] gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + + S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFSDCYILML-TARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRT 132 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236 >gi|13474249|ref|NP_105817.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|260463214|ref|ZP_05811416.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|14025001|dbj|BAB51603.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|259031064|gb|EEW32338.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 233 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L+SE + V G +E + ILD+ + + G E+ Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLAARPPNLAILDIKMPRMDGMEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-------- 114 LR +R K PV L+ D++ GL+ GADD+I KPF++ LV R+RA Sbjct: 64 LRRMR-QKSDLPVIFLTSKDDEIDELFGLKMGADDFIRKPFSQRLLVERVRAVLRRASAR 122 Query: 115 -IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ + G L ++ + T +G + LT E+ ++ L+ R +++ Sbjct: 123 EAAAKAPSQQARSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK IET++G GY RE Sbjct: 183 LMDSAYDEQVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRFRE 232 >gi|302381998|ref|YP_003817821.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192626|gb|ADL00198.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A ++ L V G G+ + E+D ++D + + G Sbjct: 1 MKILVVEDDAEAAQAMVRGLTEGGHTVSHAIDGAYGLLEAQKGEYDVYVVDRMMPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TPV LS M +ED+V GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 61 GMVETLRKDGDQTPVLFLSAMGEVEDRVVGLKAGGDDYLVKPYAFAELIARVEALSRRRE 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL +NL A+TV I L +E+Q++E L ++T+ M L ++ Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGTSEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR K+ + + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLE 222 >gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99] gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI ++ED++AL+ + L++E + V G++ + D +ILD L + G E Sbjct: 6 RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRR 118 + R LR + P+ +L+ ++VRGL GADDY+ KPF+ EL+AR++A+ R Sbjct: 66 LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ GDL ++ V + +HL E++++E + ++ L+ + Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + +LR K+ N + I TV G GY Sbjct: 186 WGPDIYVDDRTVDVHVGRLR-KVINVGRAADSIRTVRGAGYSF 227 >gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 265 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%) Query: 1 MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ ILLIEDD+ + + L+ F+V D G G L Y D I+LDL L + Sbjct: 1 MKPCILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVD 60 Query: 59 GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G + + LR + + P+ +L+ + +DKV G SGADDY++KPF+ EEL RI+A++ Sbjct: 61 GLTLCQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120 Query: 117 RRSRG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RRS + ++ G L++ + + LT E++++ L R T+ Sbjct: 121 RRSDRAPVGTSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTV 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L ++ + +++ I V + LR KL +I+TV+G GY L Sbjct: 181 APSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233 >gi|15892024|ref|NP_359738.1| transcriptional activator protein czcR [Rickettsia conorii str. Malish 7] gi|15619141|gb|AAL02639.1| transcriptional activator protein czcR [Rickettsia conorii str. Malish 7] Length = 237 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 131/223 (58%), Positives = 168/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|83745618|ref|ZP_00942676.1| OmpR [Ralstonia solanacearum UW551] gi|83727695|gb|EAP74815.1| OmpR [Ralstonia solanacearum UW551] Length = 245 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + F V V G+ + ++LDL + + G Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 LR LR PV +L+ D++ GL+ GADDY+ KPF+ EL+ARI A++RR + Sbjct: 65 ALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N +T+ H + ++ E+ +++LL LT+E + Sbjct: 125 VAPAAPEDRDSFGFGPFKLNFRMRTLFRGDHALSISDTEFALLKLLVTHAMQVLTREHIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y + IDV I +LR+ L A YI+TV GRGY + +D Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERD 236 >gi|167632633|ref|ZP_02390960.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170685451|ref|ZP_02876675.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254685422|ref|ZP_05149282.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254742948|ref|ZP_05200633.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167532931|gb|EDR95567.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170670811|gb|EDT21550.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 215 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D++ + ++ + E F V++ GE+ +++ + D ILD + G Sbjct: 1 MKVLIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWMMPKHSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ K F+ L+ R + Sbjct: 61 TVCQEIKKNSSVK-VLMLTAKSESEDELAALQSGADEYVKKTFHPGVLITRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL ++ V + +T E ++I+ K LT++ L+ ++ Sbjct: 115 IQHDDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D + +LRKK+ I+T G GY L E ++ Sbjct: 175 FDYFGEERTVDTHVRRLRKKIGEN-----IIKTHRGLGYSLEEQSE 215 >gi|118590588|ref|ZP_01547990.1| Response regulator receiver [Stappia aggregata IAM 12614] gi|118437051|gb|EAV43690.1| Response regulator receiver [Stappia aggregata IAM 12614] Length = 248 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L++DD+ + S+ + L++E + V G ++ + + I D+ + + G E+ Sbjct: 20 IALVDDDRNILTSVSIALEAEGYRVQTYTDGTSALDGLQSDPPELAIFDIKMPRMDGMEL 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR PV L+ D++ GL+ GADD+I KPF++ LV R+RA++RR++ Sbjct: 80 LRRLR-QNSDLPVIFLTSKDDEIDELFGLKMGADDFIRKPFSQRLLVERVRAVLRRAQPR 138 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S G L ++ + T G + LT E+ ++ L+ R ++ Sbjct: 139 DASTPRDDADKLLERGQLVMDQERHTCTWNGKPVTLTVTEFLILSALAQRPGVVKSRNAL 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ YD + + + ID I +LRKK + IET++G GY RE Sbjct: 199 MDAAYDDQVYVDDRTIDSHIKRLRKKFKVVDDDFDMIETLYGVGYRFRE 247 >gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ + L+ F + D I+LD L G + Sbjct: 4 RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R R + P+ +L+ D+V GL++G DDY+ KPF+ EL+ARIRA++RR+ Sbjct: 64 LARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + V G L ++ A V + + EY+++ T+ L+H+ Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G E + IDV I +LRK L G +N ++TV G GY Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225 >gi|158317452|ref|YP_001509960.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112857|gb|ABW15054.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 220 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ ED+ +A IE L++ F G +E+ E D I+LDLGL D+ GF Sbjct: 4 RVLIAEDEYRIASFIEKGLRANGFLPVCVGDGASALEVALRGEVDLIVLDLGLPDMDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A + PV +L+ + D V L+ GADDY+SKPF EEL+ARIR +R R Sbjct: 64 VLRRLRGAGVDVPVVVLTARDGVRDTVAALEGGADDYMSKPFRFEELLARIRLRLRADRA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ +S++L + +V G + LT +E+ + E L +E L+ ++ Sbjct: 124 PEATVLRVRGVSLDLRTRRAQVGGRTVDLTAREFVLAETFLRHPGQVLAREQLLSAVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P ++DV++ LR+K+ I TV G GY L Sbjct: 184 DYDPGSNVVDVYVGYLRRKIGAD-----CITTVRGMGYRLE 219 >gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8] gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8] Length = 233 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 3/226 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD L+ I L+ FNV G+ +E + ++ ILDL L G +V Sbjct: 5 LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQVC 64 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR A S P+ +L+ D++ GL+SGADDY+ KP L+ARIRA++RR Sbjct: 65 RDLR-AFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQLD 123 Query: 124 QSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ + V G + LT E++M+ L+ + LT++ LN + Sbjct: 124 EPPERLEFGPLVIDRRTRAVVHAGSEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRGI 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +DV + KLR+KL + I+TVWG+GY+ A + Sbjct: 184 EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLFSPKAHE 229 >gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 283 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 57 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 116 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 117 VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 176 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +S + GDL ++ D+ V G IH+T E++++ L L+K L+ Sbjct: 177 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 236 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 237 RVWNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTRRGAGYLIKP 281 >gi|49081994|gb|AAT50397.1| PA1799 [synthetic construct] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD+ LA I L F V G+ ++ ++LDL L G + Sbjct: 8 KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ IL+ D + GL+SGADDY+ KP L+AR+RA++RR Sbjct: 68 VCREIR-RVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAP 126 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S G L+++ + E++G I LT E++++ LL+ + L+++ LN + Sbjct: 127 LPASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIR 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +DV I KLR KL + I+TVWG+GY+ + Sbjct: 187 GIGFDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFNPLGWE 234 >gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ + + + + +E + I++D L G Sbjct: 4 RILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGIN 63 Query: 62 VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ L+ PV +L+ EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR Sbjct: 64 LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +I L ++ + V + + E++M+ + ++E LN++ Sbjct: 124 SPTALDDVIDVQGLKLDPVSHRVTSGDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L + G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SGGHDKMVQTVRGAGYRF 225 >gi|332204624|gb|EGJ18689.1| response regulator [Streptococcus pneumoniae GA47901] Length = 218 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + + L + G++ ++ YE ++LD+ + + G Sbjct: 1 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALDQFSSYEVALVLLDIQMPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ E K+ S AD Y+ KPF+ L R+ AI +R Sbjct: 61 EVLAEIR-KTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ + + G + + KE ++++ L + LT+ ++ ++ Sbjct: 120 DTGRIFSYKDTKV-DFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWK 178 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P ++IDV+I +LRKKL I TV GY L Sbjct: 179 ATDEVPFDRVIDVYIKELRKKLDLD-----CILTVRNVGYKLE 216 >gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. glycinea str. B076] gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L + ++ + G + + + I+LD+ L G ++ Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + P+ +++ D++ GL GADDYI KPF+ E+VAR++AI+RR+ Sbjct: 70 CRELR-SFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L V+ G + LT E +++ + +++ L+ LY Sbjct: 129 DPHTPKV--LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D I LR+KL A G++ I++++G GY L Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|307313311|ref|ZP_07592935.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320756|ref|ZP_07600167.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306893574|gb|EFN24349.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899324|gb|EFN29959.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 232 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD L+ + L + V+ GI D +ILD+ L D GFE Sbjct: 4 RVLIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGRRTPDVVILDVMLPDFDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A PV +L+ D++ GL+ GADDY+ KPFN EL+AR++AI+RR G Sbjct: 64 TCRRIR-AVSDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G L ++ +++V + G LT ++ ++ L+ TL++E ++ + Sbjct: 123 SAAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVK 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I ++R + + I TV G GYV Sbjct: 183 GEELDAFDRSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224 >gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 224 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + + + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVL LR +ST V +++ +E+KV+GL+ GADDY+ KPF EL+AR+R + R Sbjct: 61 EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + +++V I +LR K+ + I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221 >gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus ATCC 53653] gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+A+ H++E L E + V G + + D I+LD+ + + G +V Sbjct: 5 VLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVDGIQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ +L+ D++ GL +GADDY++KPF+ EE+ AR+RA++RR Sbjct: 65 CRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAPV 124 Query: 123 AQSLIVTGDL---------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ A+ V G + LT E+ ++ELL+ L Sbjct: 125 PEPTTEGTVFDATLAVADLRLDPSARRVWRGGTELELTRTEFDLLELLARNAGIVLDHGT 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ P K + V+I LR+K+ I TV G GY LRE Sbjct: 185 IYSRIWGYDFGPGSKNLAVYIGYLRRKVDQTGLTP-LIHTVRGVGYTLREE 234 >gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L+ K + +++ SI D V GL GADDYI +PF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEKTTYI-MMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122 Query: 122 HAQSLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + + + + ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD+ ++ + L+ + V G + D ++LDL L + G E Sbjct: 4 RVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLPGVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR P+ +L+ D+V GLQ GADDY+SKPF+ ELV R+ +++RR Sbjct: 64 VCRRLRAQPGGIPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGG 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R +++ G L V + + GH + LT +E+ ++ L + L + Sbjct: 124 PRAAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPVRAFRRAELLERV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + V + +LR+K+ I TVWG GY Sbjct: 184 WGWNF-GDQSTVTVHVRRLREKVEADPANPRRIVTVWGIGYRYEP 227 >gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ + + + + + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 66 ARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L +A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225 >gi|330951730|gb|EGH51990.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L S+ + V G +G+ + D ++LDLGL D+ G +V Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R PV +LS +S KV+ L +GA+DY++KPF +E +ARIRA++R++ G Sbjct: 67 LSEFR-EWSGVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125 Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+V+L + V + G + LT KEY ++ L+ +T++ L ++ Sbjct: 126 EKPESALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + LR+KL++ +I T G GY L Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612] gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + +L+ E F+V + + FD I+LDL L D G+ Sbjct: 3 RILIVEDERQIVKHLRALLEEEGFSVDTAATRAEAESALEGDRFDLILLDLMLPDGNGYA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + +TPV L+ + V G GADDYI+KPF ELVAR++ +RRS Sbjct: 63 L-CTEILHRGNTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRRSGR 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G+LSV+ +V G I L+ EY+++ L + L++ L ++D Sbjct: 122 AQSVFQL-GNLSVDTAGASVRRDGQEIVLSALEYRLLLTLLSHRGEVLSRSRLLQEIWDA 180 Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + V+I +LR+K+ I+TV G GY + + Sbjct: 181 SGDFVNDNTLTVYIKRLREKIEKDPAEPRIIKTVRGLGYKVED 223 >gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus CTV-05] gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus CTV-05] Length = 240 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59 RIL++EDD ++A + + K E + + G + +++ K ++D I LDL L G Sbjct: 4 RILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R + P+ +L+ S D+V GL GAD+Y++KPF+ L+ARI+A+ RR Sbjct: 64 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123 Query: 120 RG----------HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168 + I T L ++ + + V + LT KE+ ++ ++ + Sbjct: 124 MMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQV 183 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ L ++ E + +D I KLR+KL I+TVWG GY ++ Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237 >gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] Length = 244 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 20 MKLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGW 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVLR +R A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R + R S Sbjct: 80 EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 139 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 140 GSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 199 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V + +LR K+ + I TV G GY++ Sbjct: 200 DMNFDSDTNVIEVAVRRLRAKVDDDFEH-KLIHTVRGMGYMMDAPE 244 >gi|330960618|gb|EGH60878.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 245 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 114/236 (48%), Gaps = 6/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L++EDD+ LA L++ +V + G + D +ILDL L GF Sbjct: 7 HVLIVEDDQRLAELTSDYLQNNGLSVAIEGNGARAAARIIDEQPDLVILDLMLPGEDGFS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R++R P+ +L+ + D ++GL +GADD++ KP + L+ARI+A++RRS Sbjct: 67 ICRSVRDRYDG-PILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIKALLRRSEA 125 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V G L V+ + ++ I LTG E+ ++ LL TL++E Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 L + + + IDV I ++R K+ + I+TV +GY+ A + + Sbjct: 186 ALRGIGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQDMSGH 241 >gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus prevotii ACS-065-V-Col13] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ L ++ L + V GE+ ++L +D IILD+ L GF Sbjct: 1 MKVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + +L+ S I+D+V+GL GA+DY++KPF+ +EL AR+R+++RR Sbjct: 61 EVLRDIRQFNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I ++ + + +G + LT KE +IE L L ++ ++ E ++H++D Sbjct: 121 IQEETEITINGITFDTVKRIATFKGKDLGLTAKETGIIEYLFLNRDRYVSVEELMDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V + LRKK+ G NYIE G+GY + E Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKVTGE-NYIENAIGKGYKIYEE 223 >gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 219 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SI+ L+ + ++V + G+ + K ++++ I+LD GL G Sbjct: 1 MRILLVEDDTSQGESIKTWLELDGYSVDWVERGDYAMTALKQHDYECILLDRGLPYASGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + TPV L+ SI D+V GL GA+DY+ KPF+ EEL ARIR+ +R + Sbjct: 61 EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++ ++ AKTV+ +G LT +E+Q++ L N +T+E +Y Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE E I+V+I +LRKKL + I T+ G GY + E Sbjct: 181 WGDEVESNAIEVYIYQLRKKLGS-----QTIRTIRGLGYRMGE 218 >gi|206896488|ref|YP_002246916.1| DNA-binding response regulator YycF [Coprothermobacter proteolyticus DSM 5265] gi|206739105|gb|ACI18183.1| DNA-binding response regulator YycF [Coprothermobacter proteolyticus DSM 5265] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + +IE L E F V G++ +E ++ + ++LDL L + G E+ Sbjct: 8 ILVVEDDRNILDAIERKLTKEGFKVIKAMNGKEALEKFYAHQPNLVLLDLMLPLVDGKEI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R + P+ +++ D++ GL+ GADDYI+KPF+ ELVAR+RA++RR+ G Sbjct: 68 LKEIRSQYDT-PIIVVTAREEEVDRILGLELGADDYITKPFSLPELVARVRAVLRRTYGM 126 Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V D++++L + V L K+++++ +L R LT+E LN + Sbjct: 127 KKTVGERRLVCDDIALDLRGHELRVNNRSYLLPKKQFELLRILMSRAGEVLTREYLLNEI 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + + +DV I LR K+ YI TV G GY + + E Sbjct: 187 WGADYYGDKRTLDVHIKWLRDKIEPNPNEPKYILTVRGVGYKFNGDVRKE 236 >gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri VA-6] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + +L+ F + + + D I+LD L G + Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGSGIQ 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ ++ PV +L+ ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I LS++ + V + + E++++ ++E LNH+ Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L G ++TV G GY Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >gi|299069602|emb|CBJ40874.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum CMR15] Length = 245 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 6/240 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L + L + F V V G+ + ++LDL + + G Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 LR LR PV +L+ S D++ GL+ GADDY+ KPF+ EL+ARI A++RR + Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +N +T+ H + ++ E+ +++LL LT+E + Sbjct: 125 VAPAAPEDRDSFSFGPFRLNFRMRTLFRGEHALSISDTEFALLKLLVTHAMQVLTREHIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 +Y + IDV + +LR+ L A YI+TV GRGY + +D E Sbjct: 185 ELMYGPGSAVSDRGIDVQVWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERDAHDEVQSP 244 >gi|254824434|ref|ZP_05229435.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|255520946|ref|ZP_05388183.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|293593670|gb|EFG01431.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] Length = 228 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 114/229 (49%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ ++ IE+ E + G+ G + E+D I+DL L ++ G Sbjct: 1 MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYDAFFKDEYDIAIIDLMLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R P+ IL+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 61 TICRKIR-EVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ + + QG + LT KE+ ++ L ++E Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + + +DV I +LR+K+ A K ++ TVWG GY E Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDE 226 >gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + K + ++ GEDG++ + FDA ++DL L + G Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R K + +LS S+EDKVR L+SGADDY+ KPF EL+AR+ AIVRR Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ + + ++L A + +G RI L +E+ ++ELL + LTK L L+ Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ ++DV +C+LR KL + I T+ G GYV R Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKL-DRGFDTKLIHTLRGIGYVFRPE 230 >gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2] gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2] Length = 235 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA ++ L E F V G DG+ L +D IILD L I G Sbjct: 7 MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR TPV +L+ + +ED+V+GLQ+GADDY+ KPF ELVARI A++RR Sbjct: 67 AVLAALR-QSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 125 Query: 121 GHAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL ++L G R+ LT KE+ ++ LL R+ L++ + Sbjct: 126 QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELAS 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + E +++V + +LR KL +A + TV G GYVL Sbjct: 186 QVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVLE 230 >gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2] gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD+ + +++++ L + V G++ + +ILD+ L + G Sbjct: 13 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNPYQLVILDILLPGMNGH 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV +++ +S E+++R + ADDY++KPF + L+ R+ A++RR Sbjct: 73 ELLREFR-KLNNTPVLMMTALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVEALLRR-S 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G L++ + V + LT KE++++ LL + TL+ E+ L+ ++ Sbjct: 131 GAVAKEIHYGKLTLLPEDFKVFYDDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + I LR KL + I+TV G GY L E + Sbjct: 191 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 230 >gi|229161727|ref|ZP_04289706.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228621694|gb|EEK78541.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 215 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D++ + ++ + E F V + GE+ +++ + D ILD + G Sbjct: 1 MKVLIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKVDLAILDWMMPKQSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + ++ V +L+ S ED++ LQSGAD+Y+ KPF+ L+ R + Sbjct: 61 AVCQEIKKNSSVK-VLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA-----KKL 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I D+ +N V + +T E Q+I+ K LT++ L+ ++ Sbjct: 115 VQHDDVIQVQDVKINFAKNKVFKNDIELEITKTELQLIKCFLQHKGMILTRKKLLDIVWG 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +D + +LRKK+ I+T G GY L E ++ Sbjct: 175 FDYFGEERTVDTHVRRLRKKIGEN-----VIKTHRGLGYSLEEQSE 215 >gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 225 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD I + N+ G G+ ++D +ILD L + G Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R + R Sbjct: 61 KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L + L + V + GH + L KE+Q+++ L N +++ + ++ Sbjct: 121 STPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223 >gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD L I + L+ E ++V T G + I++ + D +ILD+ L D+ G V Sbjct: 7 ILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGLTV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRSRG 121 + +R S P+ +L+ + ED + GL GADDY+ KPFN +EL+ARIRA+ R Sbjct: 67 CQKVR-EFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPAT 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + +S++ + V V+G + LT EYQ++ +L+ +T E L ++ Sbjct: 126 NRPLTVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWGS 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V+I LR+K+ + T WG GY + Sbjct: 186 EPMRDNDYLKVYIWHLRRKIEIDPRQPQLLLTEWGVGYRMEP 227 >gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens FD-1] Length = 225 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ +LK ++V G DG++ +D IILD+ L + G Sbjct: 1 MRLLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIMLPGMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EVLR LR I+TPV +L+ S +EDK+ GL GADDY++KPF EL+AR+RA R+ Sbjct: 61 EVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRRKG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + L++N D +V +G + L+ KEYQ++ELL L KE + ++ Sbjct: 121 EIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERIIEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E I+V+I LRKKL++ + I+T G GY L + Sbjct: 181 GYESDVEYNNIEVYISFLRKKLASISA-PVQIKTARGIGYSLEQEG 225 >gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15] gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082] gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15] gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 62/227 (27%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + G++ + + + +ILD+ + ++ G Sbjct: 8 MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++++RR+ Sbjct: 68 MQVVKELRKESQI-PIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 126 Query: 120 RGHAQSLIVT----GDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L +N D+ V + G I LT E+ ++ LL+ N + + Sbjct: 127 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K + V + LR K+ A GG+ I+TVWG GY + Sbjct: 187 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 233 >gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I + L+ ++ + + + + D I+LD L G E+ Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65 Query: 63 LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 R L+ P+ +L+ ++K++GL+ GADDYI+KPF+ ELVAR++A+ R Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G L ++ + V + G + EY++++ + T+ L+ ++ Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +DV I +LRK L +A ++TV G GY Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225 >gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 233 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD + + L F V V G + +FD II+D+ + G E Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR A + P+ +L+ ++ +++ GL++GADDY+SKPF+ ELV RI I+RR+ Sbjct: 73 VTRGLR-AIKNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRRNAG 131 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ G + +L K ++ I LT +E +++ L + R T+ + + Sbjct: 132 GEGPKIEQVMFGPYTFSLTRKELKKASEVIRLTDREQEIMLLFARRAGDTIPRHELI--- 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I +LR+K+ + +++TV G GY L Sbjct: 189 -GNDTEVGERTIDVQINRLRRKIEDDPANPVWLQTVRGIGYRL 230 >gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627] gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK + PV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QILQTLRTAKKT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L ++G ++ ++ V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 120 ALNSTLEISGL-KMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +DV I +LR K+ + + I T+ G GY L Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFNEKLIATIRGMGYSLV 219 >gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis MSMB43] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G G+ + E+D IILD+ L G+ Sbjct: 1 MRILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR STPV L+ + D+V+GL+ GADDY+ KPF+ ELVAR+R+I+RR + Sbjct: 61 TVLERLRRE-RSTPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L + QG + LT KE+ ++ LL R+ L + + ++D Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D I +LR K+ + A I TV G GYVL Sbjct: 180 MNFNSDTNVVDAAIRRLRAKI-DDAYEPKLIHTVRGMGYVLE 220 >gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14] gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14] Length = 219 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I L+ + ++ G D + +DAI+LDLGL + G Sbjct: 1 MKILVVEDEVTLGEQIIAGLEQSGWVAELSCDGIDALYRATSEPWDAIVLDLGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R ++ PV ILS + + +V GL +GADDY++KPF ELVAR+RA +RRS Sbjct: 61 TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +I G+LS++ V +G I LT E++++ L + +++ + H+Y Sbjct: 121 GNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VFI ++R+K+ N I+TV G GY + N Sbjct: 181 QDFDRDSNTIEVFIGRIRRKIGND-----VIKTVRGLGYRINAN 219 >gi|46200151|ref|YP_005818.1| phosphate regulon transcriptional regulatory protein phoB [Thermus thermophilus HB27] gi|55980114|ref|YP_143411.1| phosphate regulon transcriptional regulatory protein PhoB [Thermus thermophilus HB8] gi|46197779|gb|AAS82191.1| phosphate regulon transcriptional regulatory protein phoB [Thermus thermophilus HB27] gi|55771527|dbj|BAD69968.1| phosphate regulon transcriptional regulatory protein PhoB [Thermus thermophilus HB8] Length = 223 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ +L + L L+ V ++ L + E ++LD L D PG + Sbjct: 4 LLLVEDEPSLRLGLRLALEGAGHRVLEAATAQEAWPLLREAE--LVVLDWMLPDEPGVRL 61 Query: 63 LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R + PV +L+ + + D+V GL GADDY+ KPF EEL+AR+ A+ R Sbjct: 62 LDRMRQGPYESLPVLMLTARAGVRDRVEGLSRGADDYLVKPFAVEELLARLEAL--LRRA 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ G L ++L+ ++G+ + LT +E+ ++ L+ R T+E L ++ Sbjct: 120 GKRKVLRRGPLLLDLERMEARLEGNPLPLTRREFALLAYLAERPGRVCTREELLEAVWGP 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +D + +LR+KL ++ETV G GY RE A Sbjct: 180 DYLGTPRTVDQHVLQLREKLGEDPKAPRFLETVRGVGYRFREEA 223 >gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] Length = 226 S