RPSBLAST alignment of GI: 254780893 and protein with PDBid: 1yio
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Length = 208
Score = 89.6 bits (221), Expect = 5e-19
Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 21/221 (9%)
Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
+ +++DD ++ + +L+S F V D +E + + ++LD+ + + G E
Sbjct: 6 TVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIE 65
Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
+ L P+ ++ I VR +++GA +++ KPF ++ L+ I ++ +
Sbjct: 66 LQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAE 125
Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
Q+ +++ LTG+E Q+++L +N G
Sbjct: 126 RRQA-----------RETQDQLEQLFSSLTGREQQVLQLTI---------RGLMNKQIAG 165
Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
+ V + +KL N N + V R
Sbjct: 166 ELGIAEVTVKVHRHNIMQKL-NVRSLANLVHLVEKYESFER 205