BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780893|ref|YP_003065306.1| two component response
regulator [Candidatus Liberibacter asiaticus str. psy62]
(236 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 236
Score = 481 bits (1239), Expect = e-138, Method: Compositional matrix adjust.
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF
Sbjct: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR
Sbjct: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD
Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA
Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
>gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 223
Score = 70.9 bits (172), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%)
Query: 28 YVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVL------RALRVAKI-----STP 74
Y+ G+DG+ L F EF+ + D+ E + L + +I P
Sbjct: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74
Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGD 131
+ +S S++ + SG DD ++KP + E++AR+ AI RR S A+ TG
Sbjct: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130
Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190
+ V D + EVQG L +E +++E L + + K + +Y DE E ++
Sbjct: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190
Query: 191 DVFICKLRKKLSNAAG 206
+ I KLRKKL N G
Sbjct: 191 ESHISKLRKKLRNKLG 206
>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 123
Score = 41.2 bits (95), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
+++++ED++ ++++ + T G + +EL + ++ D II+D+ L +I G E
Sbjct: 4 KVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEISGLE 63
Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
+ + ++ PV ++ + D+ R + G + YISKP +
Sbjct: 64 ITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPIS 108
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 37.7 bits (86), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
+LL+ED+ ++ + ML++ + V+ G D +++ + + D +I D+ + ++ G
Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743
Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKV-RGLQSGAD-DYISKPFNKEELVARIRAIVR 117
+LR LR S +SG + ED + L A ++SKPF+ ++L + +++
Sbjct: 744 TLLRELRKTYPSLKFIFISGYA--EDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800
>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 133
Score = 29.6 bits (65), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAI--VRRSRGHAQSL 126
E + G ++GA+ ++ KPFN+E L +R + +++S+ Q L
Sbjct: 86 FEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130
>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 26.6 bits (57), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 45/111 (40%)
Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
+ILL EDD + + L + V + G + + F ++ D+ + ++ G E
Sbjct: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
+ R V ++G +++ +SKPF+ +LV +
Sbjct: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 26.6 bits (57), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
+A++ ++TP IL+ + I++ R L + + K +KEEL A + A+
Sbjct: 134 KAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYAL 185
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 24.6 bits (52), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 73 TPVCILSGMSSIEDKVR 89
TP CILS SI++ R
Sbjct: 96 TPFCILSSWKSIQENFR 112
>gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 129
Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 80 GMSSIEDKVRGLQSGADDYI 99
GMSS+E KV GL +G D +
Sbjct: 78 GMSSLEVKVSGLGAGRDSAL 97
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 22.3 bits (46), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGA 95
+PG ++++L+ AK S P+ +L + + +RG S A
Sbjct: 419 MPG-RIIQSLKRAKRSNPLLLLDEIDKMGSDLRGDPSAA 456
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,792
Number of Sequences: 1233
Number of extensions: 5614
Number of successful extensions: 20
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 12
length of query: 236
length of database: 328,796
effective HSP length: 71
effective length of query: 165
effective length of database: 241,253
effective search space: 39806745
effective search space used: 39806745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)