Query gi|254780894|ref|YP_003065307.1| hypothetical protein CLIBASIA_03955 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 46 out of 48
Neff 3.9
Searched_HMMs 33803
Date Wed Jun 1 18:21:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780894.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1g_A General control protei 54.4 14 0.00041 17.7 3.4 31 21-51 1-31 (33)
2 >2cly_A ATP synthase B chain, 38.5 28 0.00083 15.8 5.4 54 44-97 53-112 (214)
3 >2wq1_A General control protei 33.1 34 0.001 15.2 4.3 32 21-52 1-32 (33)
4 >3c3f_A Alpha/beta peptide wit 28.1 41 0.0012 14.7 4.3 31 21-51 2-32 (34)
5 >1czq_A IQN17, fusion protein 24.5 48 0.0014 14.3 3.4 29 21-49 2-30 (46)
6 >2jo8_A Serine/threonine-prote 22.5 42 0.0012 14.7 1.5 21 10-30 7-27 (51)
7 >2bni_A General control protei 21.3 55 0.0016 13.9 3.8 31 21-51 2-32 (34)
8 >1ykh_A RNA polymerase II medi 21.3 56 0.0016 13.9 5.3 33 3-35 73-105 (108)
9 >1ihq_A Chimeric peptide glytm 19.7 60 0.0018 13.7 4.9 32 21-52 6-37 (38)
10 >2o0a_A S.cerevisiae chromosom 18.7 39 0.0011 14.9 0.7 16 69-84 10-25 (298)
No 1
>>3i1g_A General control protein GCN4; leucine zipper, peptide, synthetic peptide, helix, double helix, activator, amino-acid biosynthesis, DNA- binding; 1.60A {Synthetic} PDB: 2ahp_A* 2o7h_A (A:)
Probab=54.41 E-value=14 Score=17.73 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999971
Q gi|254780894|r 21 QLQQLRATILEFRRIVADLEKQIAIEERQVG 51 (103)
Q Consensus 21 ~laql~~m~~ef~~~~~~LE~qI~~Ee~~ag 51 (103)
++.||+..+.++.-...+||.+++-=.+-.|
T Consensus 1 rm~qlEdkveElL~kn~~lEnEvarlk~lig 31 (33)
T 3i1g_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9467899999999988768889999999856
No 2
>>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} (A:)
Probab=38.51 E-value=28 Score=15.79 Aligned_cols=54 Identities=6% Similarity=-0.118 Sum_probs=35.9
Q ss_pred HHHHHHHHCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999971577------0014318999999999999999999999999999999999999
Q gi|254780894|r 44 AIEERQVGIYD------KDHFAYPILAKSARQRIDNLLLSIRDLLLRQESLESHLESESN 97 (103)
Q Consensus 44 ~~Ee~~agi~d------~~hFaY~tfAraa~~RRdnL~~Si~~l~~Q~e~a~~~L~~a~~ 97 (103)
..|+-+..++. ..+|.||.+....-.|++++..++.+.+...+++...+.+.-.
T Consensus 53 ~n~e~~~~i~F~i~~~l~~k~~~~~i~~~ld~R~~~I~~~l~~a~~~~~ea~~~~~e~~~ 112 (214)
T 2cly_A 53 ITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEK 112 (214)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 880799999999999999999899999999998999999999999999999999999999
No 3
>>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A 1zik_A ... (A:)
Probab=33.13 E-value=34 Score=15.25 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999715
Q gi|254780894|r 21 QLQQLRATILEFRRIVADLEKQIAIEERQVGI 52 (103)
Q Consensus 21 ~laql~~m~~ef~~~~~~LE~qI~~Ee~~agi 52 (103)
++.||+..+.++.-.+-.+|.+|+--.+..|.
T Consensus 1 rmkqledkiee~lskiyh~eneiar~kklige 32 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 92688999999999999868999999988547
No 4
>>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain sequence on AN (alpha-alpha-alpha-beta)...; helix bundle, foldamer, coiled coil, unknown function; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} (A:)
Probab=28.08 E-value=41 Score=14.71 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999971
Q gi|254780894|r 21 QLQQLRATILEFRRIVADLEKQIAIEERQVG 51 (103)
Q Consensus 21 ~laql~~m~~ef~~~~~~LE~qI~~Ee~~ag 51 (103)
++.|++..+.++.-..-.||.+|+-=.+..|
T Consensus 2 rmkq~edkiee~lsk~yhleneiar~kklig 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1879999999999999870008999999985
No 5
>>1czq_A IQN17, fusion protein between the hydrophobic pocket of HIV GP41 and GCN4-PIQI; envelope glycoprotein, coiled coil, viral protein/viral protein inhibitor complex; HET: DAR DHI DTR; 1.50A {Saccharomyces cerevisiae} (A:)
Probab=24.53 E-value=48 Score=14.31 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999
Q gi|254780894|r 21 QLQQLRATILEFRRIVADLEKQIAIEERQ 49 (103)
Q Consensus 21 ~laql~~m~~ef~~~~~~LE~qI~~Ee~~ 49 (103)
++.|++..+.|+.-..-.+|.+|+-=.+.
T Consensus 2 RMKQiEDkiEEilSK~yhiENEiARiKKL 30 (46)
T 1czq_A 2 RMKQIEDKIEEIESKQKKIENEIARIKKL 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16688899999999888888899999999
No 6
>>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} (A:)
Probab=22.51 E-value=42 Score=14.69 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999889999999999999999
Q gi|254780894|r 10 LKEFRLNDERRQLQQLRATIL 30 (103)
Q Consensus 10 Lk~fqVdEkRR~laql~~m~~ 30 (103)
||.+-++|.+++|+-|+.++.
T Consensus 7 Lk~ls~eeL~~rl~sLD~~ME 27 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALDPMME 27 (51)
T ss_dssp GGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCCHHHH
T ss_conf 986689999999986678899
No 7
>>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} (A:)
Probab=21.35 E-value=55 Score=13.91 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999971
Q gi|254780894|r 21 QLQQLRATILEFRRIVADLEKQIAIEERQVG 51 (103)
Q Consensus 21 ~laql~~m~~ef~~~~~~LE~qI~~Ee~~ag 51 (103)
++.||+..+.++.-.+-.+|.+|+-=.+..|
T Consensus 2 rmkqiEDkiEEiLSK~yHieNE~ARikklig 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1778989999999999988889999999866
No 8
>>1ykh_A RNA polymerase II mediator complex protein MED7; gene regulation; 3.00A {Saccharomyces cerevisiae} (A:)
Probab=21.30 E-value=56 Score=13.91 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 678889999988999999999999999999999
Q gi|254780894|r 3 LQEQRTRLKEFRLNDERRQLQQLRATILEFRRI 35 (103)
Q Consensus 3 sretLIRLk~fqVdEkRR~laql~~m~~ef~~~ 35 (103)
+|+|||-+=+-|+++++-.+.++....++....
T Consensus 73 AResLi~~le~Qi~~k~~~i~~~~~~~~~~~~~ 105 (108)
T 1ykh_A 73 SRESLIMLLEEQLEYKRGEIREIEQVCKQVHDK 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999998
No 9
>>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} (A:)
Probab=19.72 E-value=60 Score=13.70 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999715
Q gi|254780894|r 21 QLQQLRATILEFRRIVADLEKQIAIEERQVGI 52 (103)
Q Consensus 21 ~laql~~m~~ef~~~~~~LE~qI~~Ee~~agi 52 (103)
.+.|++..+.++.-..-.||.+|+-=.+..|.
T Consensus 6 ~mkq~edKieellsknYHlENevARlkkLvGE 37 (38)
T 1ihq_A 6 SLEAVRRKIRSLQEQNYHLENEVARLKKLVGE 37 (38)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 69999999998998745689899999998457
No 10
>>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} (A:)
Probab=18.73 E-value=39 Score=14.89 Aligned_cols=16 Identities=25% Similarity=-0.045 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780894|r 69 QRIDNLLLSIRDLLLR 84 (103)
Q Consensus 69 ~RRdnL~~Si~~l~~Q 84 (103)
-||.+|.+||.|+++.
T Consensus 10 ~rRRkLeNSIdElkG~ 25 (298)
T 2o0a_A 10 LRSRRLENSIIEQKGT 25 (298)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCE
T ss_conf 9998887559986251
Done!