Query gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 91 No_of_seqs 84 out of 86 Neff 2.7 Searched_HMMs 33803 Date Wed Jun 1 19:23:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780895.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jrt_A Uncharacterized protei 100.0 1.7E-41 0 261.7 5.7 91 1-91 1-91 (95) 2 >2oa4_A SIR5; structure, struc 100.0 2.7E-41 1.4E-45 260.5 5.7 91 1-91 2-92 (101) 3 >2elh_A CG11849-PA, LD40883P; 90.0 0.49 1.5E-05 27.6 4.5 64 22-86 12-75 (87) 4 >2jn6_A Protein CGL2762, trans 74.5 4.6 0.00014 22.0 4.1 48 31-78 4-52 (56) 5 >2k53_A A3DK08 protein; NESG, 59.0 7.8 0.00023 20.7 2.7 30 46-75 35-65 (76) 6 >2k5e_A Uncharacterized protei 44.9 17 0.00049 18.8 2.6 27 45-71 36-62 (73) 7 >2keb_A DNA polymerase subunit 44.4 17 0.0005 18.7 2.5 38 52-89 50-88 (101) 8 >2job_A Antilipopolysaccharide 38.0 20 0.00059 18.3 2.1 18 40-57 81-98 (102) 9 >2ev1_A Hypothetical protein R 36.7 36 0.0011 16.8 3.2 26 49-74 3-28 (93) 10 >2rn7_A IS629 ORFA; helix, all 36.2 39 0.0011 16.6 3.8 51 30-80 4-61 (108) 11 >1w36_C RECC, exodeoxyribonucl 33.3 40 0.0012 16.6 3.0 31 48-78 10-40 (122) 12 >1z4h_A TORI, TOR inhibition p 31.8 46 0.0014 16.2 3.1 26 47-72 8-33 (66) 13 >3eu8_A Putative glucoamylase; 31.5 45 0.0013 16.3 3.0 31 36-66 69-99 (313) 14 >2jmf_B Neurogenic locus notch 27.3 25 0.00074 17.7 1.1 16 14-29 1-16 (26) 15 >1y6u_A XIS, excisionase from 26.1 51 0.0015 15.9 2.5 25 48-72 15-39 (70) 16 >2bze_A KIAA0252 protein; huma 25.1 58 0.0017 15.6 2.7 21 59-79 114-134 (153) 17 >1y10_A Hypothetical protein R 24.9 60 0.0018 15.6 2.7 28 47-74 6-33 (80) 18 >2cjp_A Epoxide hydrolase; HET 24.6 55 0.0016 15.8 2.5 26 61-90 76-101 (115) 19 >2enk_A HUEL, solute carrier f 24.5 45 0.0013 16.3 2.0 23 46-68 11-33 (101) 20 >3i28_A Epoxide hydrolase 2; a 23.9 42 0.0012 16.5 1.7 26 61-90 78-103 (117) 21 >2aj4_A Galactokinase; galacto 22.6 67 0.002 15.3 2.6 30 39-68 76-108 (149) 22 >1hym_A CMTI-V, hydrolyzed cuc 21.4 25 0.00074 17.7 0.2 20 3-22 26-45 (45) 23 >2j0n_A Invasin IPAD, IPAD; T3 20.9 60 0.0018 15.6 2.0 31 61-91 139-171 (200) 24 >1jw2_A Hemolysin expression m 20.5 69 0.002 15.2 2.3 26 57-83 31-56 (72) 25 >3hhw_K Nucleoprotein; protein 20.1 29 0.00086 17.4 0.3 24 47-70 11-34 (207) No 1 >>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} (A:) Probab=100.00 E-value=1.7e-41 Score=261.71 Aligned_cols=91 Identities=47% Similarity=0.709 Sum_probs=86.4 Q ss_pred CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH Q ss_conf 96420323226777999833532175998850367799999999860886999999770679999999999999839986 Q gi|254780895|r 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG 80 (91) Q Consensus 1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (91) |-..--..|++|+|||||+||++||||++|+||||||||+||++|.+||||++|||+||+||.|||.+|++++++||++| T Consensus 1 m~l~k~~gp~~v~~pdg~~~t~adlp~~~trRWvarRKaaVV~aV~~Gl~t~~EA~rrY~Ls~eEf~~W~~a~~~hge~a 80 (95) T 2jrt_A 1 MYLKRVDGPRQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA 80 (95) T ss_dssp CCSCCCCSCSEEECTTSCEEETTTSCCSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTS T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 98666899850357999853120099955640359999999999982847799999884999999999999999982999 Q ss_pred HHHHHHHHHCC Q ss_conf 88757776339 Q gi|254780895|r 81 LRTTQIQKYRE 91 (91) Q Consensus 81 Lr~T~lQ~YRq 91 (91) ||+|++|+||| T Consensus 81 LRat~lq~yrq 91 (95) T 2jrt_A 81 LKVTMIQKYRQ 91 (95) T ss_dssp CCTTHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 98878999999 No 2 >>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} (A:) Probab=100.00 E-value=2.7e-41 Score=260.48 Aligned_cols=91 Identities=47% Similarity=0.710 Sum_probs=86.1 Q ss_pred CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH Q ss_conf 96420323226777999833532175998850367799999999860886999999770679999999999999839986 Q gi|254780895|r 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG 80 (91) Q Consensus 1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (91) |-..--..|++|+|||||+||++||||++|+||||||||+||++|.+||||++|||++|+||.|||.+|++++++||++| T Consensus 2 m~l~kv~gp~~v~~pdg~~~t~adlp~~~tkRWvarRKaaVV~~V~~Gl~t~~EA~rrY~LS~eEf~~W~~~~~rhge~a 81 (101) T 2oa4_A 2 MFLRKVEGPRSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA 81 (101) T ss_dssp CCSSCCSSSCEEECSSSCEEETTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSS T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 64255899861458999832003399855620239999999999983867899999896989999999999999984998 Q ss_pred HHHHHHHHHCC Q ss_conf 88757776339 Q gi|254780895|r 81 LRTTQIQKYRE 91 (91) Q Consensus 81 Lr~T~lQ~YRq 91 (91) ||+|++|+||| T Consensus 82 LRat~lq~yRq 92 (101) T 2oa4_A 82 LKVTALKKYRQ 92 (101) T ss_dssp SCCHHHHHHHH T ss_pred HHHCCHHHHHH T ss_conf 84532899999 No 3 >>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:) Probab=90.03 E-value=0.49 Score=27.61 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=53.9 Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHH Q ss_conf 32175998850367799999999860886999999770679999999999999839986887577 Q gi|254780895|r 22 IANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAGLRTTQI 86 (91) Q Consensus 22 ~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~gLr~T~l 86 (91) -..-.+...+++-..-|+++|+-|..|. |..|+|..|+++..-|..|.+.....+..+-+.+.+ T Consensus 12 ~~~~~~~~rr~yt~efK~~av~~~~~G~-sv~eva~~~gIs~stl~~W~k~~~~~~~~~~~~~~~ 75 (87) T 2elh_A 12 MGTKGKRPLRSLTPRDKIHAIQRIHDGE-SKASVARDIGVPESTLRGWCKNEDKLRFMSRQSATD 75 (87) T ss_dssp CCSCCSSCCSSCCHHHHHHHHHHHHHTC-CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCCC T ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 1136998887089999999999987269-999999997969999999999999874320135832 No 4 >>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56) Probab=74.50 E-value=4.6 Score=21.99 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=41.9 Q ss_pred CCHHHHHHHHHHHHHHC-CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH Q ss_conf 50367799999999860-8869999997706799999999999998399 Q gi|254780895|r 31 RRWVARRKAEVVAAVKG-GLLSLEEACQIYTLTVEEFLSWQASIVQHGL 78 (91) Q Consensus 31 ~RWVasRKA~VV~aV~~-GLis~~EA~~rY~LS~EEf~~W~~av~~hG~ 78 (91) ++|-.-=|+++|+-+.. +=.|..+.++.|+++..-+..|.+....+|. T Consensus 4 r~ys~EFK~~aV~l~~~~~g~sv~~vA~~~gi~~~tl~~Wvk~~~~~~~ 52 (56) T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (56) T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC T ss_conf 9899999999999999838983999999969982130399999721345 No 5 >>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} (A:) Probab=58.97 E-value=7.8 Score=20.69 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=23.3 Q ss_pred HCCCCCHHHHHHHCCCCHHHHHHHHH-HHHH Q ss_conf 60886999999770679999999999-9998 Q gi|254780895|r 46 KGGLLSLEEACQIYTLTVEEFLSWQA-SIVQ 75 (91) Q Consensus 46 ~~GLis~~EA~~rY~LS~EEf~~W~~-av~~ 75 (91) -+|-.|+++||..|++-.++|..=.. +++. T Consensus 35 ~~~~~tL~~a~~~~gid~~~ll~~Ln~~i~~ 65 (76) T 2k53_A 35 SSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76) T ss_dssp CCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 6677759999989199999999999999997 No 6 >>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii} (A:) Probab=44.89 E-value=17 Score=18.78 Aligned_cols=27 Identities=26% Similarity=0.190 Sum_probs=22.8 Q ss_pred HHCCCCCHHHHHHHCCCCHHHHHHHHH Q ss_conf 860886999999770679999999999 Q gi|254780895|r 45 VKGGLLSLEEACQIYTLTVEEFLSWQA 71 (91) Q Consensus 45 V~~GLis~~EA~~rY~LS~EEf~~W~~ 71 (91) .-+|-.|+++||..|++-.++|..=.. T Consensus 36 ~~~~~~tL~~aa~~~gid~~~ll~~Ln 62 (73) T 2k5e_A 36 MGAQNESLEQGANAHGLNVEDILRDLN 62 (73) T ss_dssp TTGGGSBHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 776668299999993989999999999 No 7 >>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprotein, polymorphism, DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:) Probab=44.43 E-value=17 Score=18.73 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=29.8 Q ss_pred HHHHHHHCCCCHHHHH-HHHHHHHHHCHHHHHHHHHHHH Q ss_conf 9999977067999999-9999999839986887577763 Q gi|254780895|r 52 LEEACQIYTLTVEEFL-SWQASIVQHGLAGLRTTQIQKY 89 (91) Q Consensus 52 ~~EA~~rY~LS~EEf~-~W~~av~~hG~~gLr~T~lQ~Y 89 (91) .-|-|-+|+|+.++|. +|..-...++...+....|-.| T Consensus 50 l~ELC~~y~ldaeelV~eW~AFs~s~~~~~~TvenL~~F 88 (101) T 2keb_A 50 LVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101) T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 999998839989999999999986169999888999999 No 8 >>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon} (A:) Probab=38.01 E-value=20 Score=18.31 Aligned_cols=18 Identities=44% Similarity=0.420 Sum_probs=15.0 Q ss_pred HHHHHHHCCCCCHHHHHH Q ss_conf 999998608869999997 Q gi|254780895|r 40 EVVAAVKGGLLSLEEACQ 57 (91) Q Consensus 40 ~VV~aV~~GLis~~EA~~ 57 (91) =|-+|+.+||||.+||-. T Consensus 81 FV~KA~~~gLiTeedA~~ 98 (102) T 2job_A 81 FVRKAFQKGLISQQEANQ 98 (102) T ss_dssp HHHHHHHHTCSCHHHHHH T ss_pred HHHHHHHCCCCCHHHHHH T ss_conf 999999848865999998 No 9 >>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A* (A:76-168) Probab=36.71 E-value=36 Score=16.85 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=20.8 Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 86999999770679999999999999 Q gi|254780895|r 49 LLSLEEACQIYTLTVEEFLSWQASIV 74 (91) Q Consensus 49 Lis~~EA~~rY~LS~EEf~~W~~av~ 74 (91) -.|..|++++.++|.|....|.+|+- T Consensus 3 ~yt~~evae~~Gv~~e~a~r~WrAlG 28 (93) T 2ev1_A 3 YVSAREISENYGVDLELLQRVQRAVG 28 (93) T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHC T ss_pred EECHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 63499999995969999999999808 No 10 >>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:) Probab=36.16 E-value=39 Score=16.65 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=40.3 Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH Q ss_conf 850367799999999860-------886999999770679999999999999839986 Q gi|254780895|r 30 TRRWVARRKAEVVAAVKG-------GLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG 80 (91) Q Consensus 30 T~RWVasRKA~VV~aV~~-------GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (91) .+++..-=|..+|+-|.. +--|..++++.|++|..-+..|.+.+...|... T Consensus 4 ~r~ys~efK~~aV~l~~e~~~~~~~~g~sv~~vA~~lgis~~~l~~W~k~~~~~~~~~ 61 (108) T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGD 61 (108) T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSCCC T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCC T ss_conf 9999999999999999986223466665399997535779899615998730124568 No 11 >>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:463-584) Probab=33.25 E-value=40 Score=16.58 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=25.4 Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH Q ss_conf 8869999997706799999999999998399 Q gi|254780895|r 48 GLLSLEEACQIYTLTVEEFLSWQASIVQHGL 78 (91) Q Consensus 48 GLis~~EA~~rY~LS~EEf~~W~~av~~hG~ 78 (91) .|+.....++||+|+++|+.-+..-+..-|. T Consensus 10 ~lL~~p~v~~rF~l~~~dl~~l~~wl~~agi 40 (122) T 1w36_C 10 ALLDVPVLAARFDITEEGLRYLRQWVNESGI 40 (122) T ss_dssp HHTTSHHHHHHTTCCHHHHHHHHHHHHHHTC T ss_pred HHHCCHHHHCCCCCCHHHHHHHHHHHHHHCC T ss_conf 9975834310347998899999999998176 No 12 >>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:) Probab=31.77 E-value=46 Score=16.23 Aligned_cols=26 Identities=12% Similarity=-0.069 Sum_probs=23.1 Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHH Q ss_conf 08869999997706799999999999 Q gi|254780895|r 47 GGLLSLEEACQIYTLTVEEFLSWQAS 72 (91) Q Consensus 47 ~GLis~~EA~~rY~LS~EEf~~W~~a 72 (91) ..+|+.+|+|+..++|..-|..|... T Consensus 8 ~~~l~~~eva~~lgis~~ti~~~~~~ 33 (66) T 1z4h_A 8 DSLVDLKFIMADTGFGKTFIYDRIKS 33 (66) T ss_dssp SSEECHHHHHHHHSSCHHHHHHHHHH T ss_pred CCEECHHHHHHHHCCCHHHHHHHHHC T ss_conf 64164999999979789998667318 No 13 >>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.12A {Bacteroides fragilis nctc 9343} (A:1-225,A:338-425) Probab=31.45 E-value=45 Score=16.28 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCCHHHH Q ss_conf 7999999998608869999997706799999 Q gi|254780895|r 36 RRKAEVVAAVKGGLLSLEEACQIYTLTVEEF 66 (91) Q Consensus 36 sRKA~VV~aV~~GLis~~EA~~rY~LS~EEf 66 (91) .-=.+.+.|+.-|+|+.+|+.+|-..+..-+ T Consensus 69 ~~L~A~~~A~e~G~I~~~e~~~R~~~tL~tL 99 (313) T 3eu8_A 69 FGIXAILAGIDRGYVSREEGLRRXEKIVGFL 99 (313) T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 9999999999838878999999999999999 No 14 >>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} (B:) Probab=27.34 E-value=25 Score=17.75 Aligned_cols=16 Identities=56% Similarity=0.779 Sum_probs=14.0 Q ss_pred CCCCCCCCHHHCCCCC Q ss_conf 7999833532175998 Q gi|254780895|r 14 GPDGSPLTIANLPPPN 29 (91) Q Consensus 14 gPdGs~lt~aDLPp~~ 29 (91) ||.|||-|.|.-||.- T Consensus 1 gplgspntgakqppsy 16 (26) T 2jmf_B 1 GPLGSPNTGAKQPPSY 16 (26) T ss_pred CCCCCCCCCCCCCCCH T ss_conf 9888888787789888 No 15 >>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:) Probab=26.10 E-value=51 Score=15.95 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.8 Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHH Q ss_conf 8869999997706799999999999 Q gi|254780895|r 48 GLLSLEEACQIYTLTVEEFLSWQAS 72 (91) Q Consensus 48 GLis~~EA~~rY~LS~EEf~~W~~a 72 (91) -++|.+|||+-+++|..-+..|... T Consensus 15 ~~ltv~Eaa~ylgis~~~ly~l~~~ 39 (70) T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70) T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH T ss_pred HEECHHHHHHHHCCCHHHHHHHHHH T ss_conf 4057999999955049999999985 No 16 >>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} (A:) Probab=25.13 E-value=58 Score=15.62 Aligned_cols=21 Identities=24% Similarity=0.675 Sum_probs=17.3 Q ss_pred CCCCHHHHHHHHHHHHHHCHH Q ss_conf 067999999999999983998 Q gi|254780895|r 59 YTLTVEEFLSWQASIVQHGLA 79 (91) Q Consensus 59 Y~LS~EEf~~W~~av~~hG~~ 79 (91) =..+++||..|..++.+.|.. T Consensus 114 ~~fte~E~~~w~~~~~~~~~~ 134 (153) T 2bze_A 114 QEFTESEFMKWKEAMFSAGMQ 134 (153) T ss_dssp SCCCHHHHHHHHHHHHHHTCC T ss_pred CCCCHHHHHHHHHHHHHCCCC T ss_conf 999999999999999966999 No 17 >>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* (A:59-138) Probab=24.88 E-value=60 Score=15.56 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=23.6 Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 0886999999770679999999999999 Q gi|254780895|r 47 GGLLSLEEACQIYTLTVEEFLSWQASIV 74 (91) Q Consensus 47 ~GLis~~EA~~rY~LS~EEf~~W~~av~ 74 (91) |-..|-.|.+++|++..|-|.--|+|+. T Consensus 6 GtyVSaReise~~Gidl~LlqR~qRA~G 33 (80) T 1y10_A 6 GTYVSAREISENYGVDLELLQRVQRAVG 33 (80) T ss_dssp SCEECHHHHHHHHTCCHHHHHHHHHHTT T ss_pred CCEEEHHHHHHHHCCCHHHHHHHHHHCC T ss_conf 7564399999983999999999999808 No 18 >>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* (A:143-257) Probab=24.65 E-value=55 Score=15.77 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.2 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHC Q ss_conf 799999999999998399868875777633 Q gi|254780895|r 61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYR 90 (91) Q Consensus 61 LS~EEf~~W~~av~~hG~~gLr~T~lQ~YR 90 (91) ||+||+.-.+....+.|..| .|+-|| T Consensus 76 lseeel~~Yv~~f~~sGf~G----~lNwYR 101 (115) T 2cjp_A 76 LSEEELDYYANKFEQTGFTG----AVNYYR 101 (115) T ss_dssp SCHHHHHHHHHHHHHHCSHH----HHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCC----CCCCCC T ss_conf 55567899987531554211----222112 No 19 >>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens} (A:) Probab=24.50 E-value=45 Score=16.29 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=19.9 Q ss_pred HCCCCCHHHHHHHCCCCHHHHHH Q ss_conf 60886999999770679999999 Q gi|254780895|r 46 KGGLLSLEEACQIYTLTVEEFLS 68 (91) Q Consensus 46 ~~GLis~~EA~~rY~LS~EEf~~ 68 (91) .+-|||..||.+-|.|+..+|.. T Consensus 11 k~~lITkteAk~eYlL~d~DLe~ 33 (101) T 2enk_A 11 QNNFITGVRAINEFCLKSSDLEQ 33 (101) T ss_dssp CCSEEEHHHHHHHTCCCHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHH T ss_conf 64423389999987788466876 No 20 >>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* (A:365-481) Probab=23.94 E-value=42 Score=16.47 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.4 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHC Q ss_conf 799999999999998399868875777633 Q gi|254780895|r 61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYR 90 (91) Q Consensus 61 LS~EEf~~W~~av~~hG~~gLr~T~lQ~YR 90 (91) ||+||+.-......+.|..| -|+-|| T Consensus 78 lteeeL~~Yv~~f~r~Gf~G----plNwYR 103 (117) T 3i28_A 78 VTEEEIQFYVQQFKKSGFRG----PLNWYR 103 (117) T ss_dssp CCHHHHHHHHHHHTTTTTHH----HHHTTS T ss_pred CCHHHHHHHHHHHHHCCCHH----HHHHHH T ss_conf 47999999999864202035----789999 No 21 >>2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} (A:288-436) Probab=22.61 E-value=67 Score=15.26 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=22.8 Q ss_pred HHHHHHHH---CCCCCHHHHHHHCCCCHHHHHH Q ss_conf 99999986---0886999999770679999999 Q gi|254780895|r 39 AEVVAAVK---GGLLSLEEACQIYTLTVEEFLS 68 (91) Q Consensus 39 A~VV~aV~---~GLis~~EA~~rY~LS~EEf~~ 68 (91) ..+|.... -+-.|.+|.|+--++|.|||.. T Consensus 76 l~~ve~~l~~~~~gYT~eEi~~~Lgis~~el~~ 108 (149) T 2aj4_A 76 LVLVEESLANKKQGFSVDDVAQSLNCSREEFTR 108 (149) T ss_dssp HHHHHHHHGGGTTCBCHHHHHHHHTCCHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 877777664202357788898750454777666 No 22 >>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} (A:) Probab=21.38 E-value=25 Score=17.74 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.7 Q ss_pred CCCCCCCCEEECCCCCCCCH Q ss_conf 42032322677799983353 Q gi|254780895|r 3 EKIQSHMKYVIGPDGSPLTI 22 (91) Q Consensus 3 e~~~~~~~~V~gPdGs~lt~ 22 (91) +.-+|.+..++.|.|+++|+ T Consensus 26 ~~enp~v~~~vl~~gs~VT~ 45 (45) T 1hym_A 26 ERQNPNVKAVILEEGTPVTK 45 (45) T ss_dssp HHHCTTCEEEEEECCSCCCC T ss_pred HHHCCCCEEEEEECCCCCCC T ss_conf 72099820798505863669 No 23 >>2j0n_A Invasin IPAD, IPAD; T3SS, plasmid, virulence, type III secretion, cell invasion; 2.10A {Shigella flexneri} (A:) Probab=20.90 E-value=60 Score=15.57 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=22.9 Q ss_pred CCHHHHHHHHHHHHHHCHH--HHHHHHHHHHCC Q ss_conf 7999999999999983998--688757776339 Q gi|254780895|r 61 LTVEEFLSWQASIVQHGLA--GLRTTQIQKYRE 91 (91) Q Consensus 61 LS~EEf~~W~~av~~hG~~--gLr~T~lQ~YRq 91 (91) ++.-+|-+|+.+++..+.. .---+-.|+||| T Consensus 139 i~~a~yqaw~a~f~a~~~~~qs~~q~l~qkys~ 171 (200) T 2j0n_A 139 LDNAKYQAWNAGFSAEDETMKNNLQTLVQKYSN 171 (200) T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 029999999999878998898799999999873 No 24 >>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} (A:) Probab=20.55 E-value=69 Score=15.21 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=20.0 Q ss_pred HHCCCCHHHHHHHHHHHHHHCHHHHHH Q ss_conf 770679999999999999839986887 Q gi|254780895|r 57 QIYTLTVEEFLSWQASIVQHGLAGLRT 83 (91) Q Consensus 57 ~rY~LS~EEf~~W~~av~~hG~~gLr~ 83 (91) -+|.|+.+|+....+|.| |-.+.|.. T Consensus 31 ~~y~L~~~El~~f~~AaD-HR~AELtm 56 (72) T 1jw2_A 31 NKYELSDNELAVFYSAAD-HRLAELTM 56 (72) T ss_dssp HHHHSCHHHHHHHHHHHH-HHHHHHHS T ss_pred HHCCCCHHHHHHHHHHHH-HHHHHHHH T ss_conf 105599899999999999-98999971 No 25 >>3hhw_K Nucleoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 2qvj_A* 3hhz_K 2gic_A (K:215-421) Probab=20.12 E-value=29 Score=17.36 Aligned_cols=24 Identities=21% Similarity=0.596 Sum_probs=20.9 Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHH Q ss_conf 088699999977067999999999 Q gi|254780895|r 47 GGLLSLEEACQIYTLTVEEFLSWQ 70 (91) Q Consensus 47 ~GLis~~EA~~rY~LS~EEf~~W~ 70 (91) .||.++...|+--+++.+||..|. T Consensus 11 aaL~sl~~~~~~~g~~~~~~~~w~ 34 (207) T 3hhw_K 11 AALATFGHLCKITGMSTEDVTTWI 34 (207) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHTC T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 888989999998299899977762 Done!