Query         gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs    84 out of 86
Neff          2.7 
Searched_HMMs 33803
Date          Wed Jun  1 19:23:09 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780895.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jrt_A Uncharacterized protei 100.0 1.7E-41       0  261.7   5.7   91    1-91      1-91  (95)
  2 >2oa4_A SIR5; structure, struc 100.0 2.7E-41 1.4E-45  260.5   5.7   91    1-91      2-92  (101)
  3 >2elh_A CG11849-PA, LD40883P;   90.0    0.49 1.5E-05   27.6   4.5   64   22-86     12-75  (87)
  4 >2jn6_A Protein CGL2762, trans  74.5     4.6 0.00014   22.0   4.1   48   31-78      4-52  (56)
  5 >2k53_A A3DK08 protein; NESG,   59.0     7.8 0.00023   20.7   2.7   30   46-75     35-65  (76)
  6 >2k5e_A Uncharacterized protei  44.9      17 0.00049   18.8   2.6   27   45-71     36-62  (73)
  7 >2keb_A DNA polymerase subunit  44.4      17  0.0005   18.7   2.5   38   52-89     50-88  (101)
  8 >2job_A Antilipopolysaccharide  38.0      20 0.00059   18.3   2.1   18   40-57     81-98  (102)
  9 >2ev1_A Hypothetical protein R  36.7      36  0.0011   16.8   3.2   26   49-74      3-28  (93)
 10 >2rn7_A IS629 ORFA; helix, all  36.2      39  0.0011   16.6   3.8   51   30-80      4-61  (108)
 11 >1w36_C RECC, exodeoxyribonucl  33.3      40  0.0012   16.6   3.0   31   48-78     10-40  (122)
 12 >1z4h_A TORI, TOR inhibition p  31.8      46  0.0014   16.2   3.1   26   47-72      8-33  (66)
 13 >3eu8_A Putative glucoamylase;  31.5      45  0.0013   16.3   3.0   31   36-66     69-99  (313)
 14 >2jmf_B Neurogenic locus notch  27.3      25 0.00074   17.7   1.1   16   14-29      1-16  (26)
 15 >1y6u_A XIS, excisionase from   26.1      51  0.0015   15.9   2.5   25   48-72     15-39  (70)
 16 >2bze_A KIAA0252 protein; huma  25.1      58  0.0017   15.6   2.7   21   59-79    114-134 (153)
 17 >1y10_A Hypothetical protein R  24.9      60  0.0018   15.6   2.7   28   47-74      6-33  (80)
 18 >2cjp_A Epoxide hydrolase; HET  24.6      55  0.0016   15.8   2.5   26   61-90     76-101 (115)
 19 >2enk_A HUEL, solute carrier f  24.5      45  0.0013   16.3   2.0   23   46-68     11-33  (101)
 20 >3i28_A Epoxide hydrolase 2; a  23.9      42  0.0012   16.5   1.7   26   61-90     78-103 (117)
 21 >2aj4_A Galactokinase; galacto  22.6      67   0.002   15.3   2.6   30   39-68     76-108 (149)
 22 >1hym_A CMTI-V, hydrolyzed cuc  21.4      25 0.00074   17.7   0.2   20    3-22     26-45  (45)
 23 >2j0n_A Invasin IPAD, IPAD; T3  20.9      60  0.0018   15.6   2.0   31   61-91    139-171 (200)
 24 >1jw2_A Hemolysin expression m  20.5      69   0.002   15.2   2.3   26   57-83     31-56  (72)
 25 >3hhw_K Nucleoprotein; protein  20.1      29 0.00086   17.4   0.3   24   47-70     11-34  (207)

No 1  
>>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} (A:)
Probab=100.00  E-value=1.7e-41  Score=261.71  Aligned_cols=91  Identities=47%  Similarity=0.709  Sum_probs=86.4

Q ss_pred             CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf             96420323226777999833532175998850367799999999860886999999770679999999999999839986
Q gi|254780895|r    1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG   80 (91)
Q Consensus         1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g   80 (91)
                      |-..--..|++|+|||||+||++||||++|+||||||||+||++|.+||||++|||+||+||.|||.+|++++++||++|
T Consensus         1 m~l~k~~gp~~v~~pdg~~~t~adlp~~~trRWvarRKaaVV~aV~~Gl~t~~EA~rrY~Ls~eEf~~W~~a~~~hge~a   80 (95)
T 2jrt_A            1 MYLKRVDGPRQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA   80 (95)
T ss_dssp             CCSCCCCSCSEEECTTSCEEETTTSCCSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTS
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98666899850357999853120099955640359999999999982847799999884999999999999999982999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             88757776339
Q gi|254780895|r   81 LRTTQIQKYRE   91 (91)
Q Consensus        81 Lr~T~lQ~YRq   91 (91)
                      ||+|++|+|||
T Consensus        81 LRat~lq~yrq   91 (95)
T 2jrt_A           81 LKVTMIQKYRQ   91 (95)
T ss_dssp             CCTTHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             98878999999


No 2  
>>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} (A:)
Probab=100.00  E-value=2.7e-41  Score=260.48  Aligned_cols=91  Identities=47%  Similarity=0.710  Sum_probs=86.1

Q ss_pred             CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf             96420323226777999833532175998850367799999999860886999999770679999999999999839986
Q gi|254780895|r    1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG   80 (91)
Q Consensus         1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g   80 (91)
                      |-..--..|++|+|||||+||++||||++|+||||||||+||++|.+||||++|||++|+||.|||.+|++++++||++|
T Consensus         2 m~l~kv~gp~~v~~pdg~~~t~adlp~~~tkRWvarRKaaVV~~V~~Gl~t~~EA~rrY~LS~eEf~~W~~~~~rhge~a   81 (101)
T 2oa4_A            2 MFLRKVEGPRSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA   81 (101)
T ss_dssp             CCSSCCSSSCEEECSSSCEEETTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSS
T ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             64255899861458999832003399855620239999999999983867899999896989999999999999984998


Q ss_pred             HHHHHHHHHCC
Q ss_conf             88757776339
Q gi|254780895|r   81 LRTTQIQKYRE   91 (91)
Q Consensus        81 Lr~T~lQ~YRq   91 (91)
                      ||+|++|+|||
T Consensus        82 LRat~lq~yRq   92 (101)
T 2oa4_A           82 LKVTALKKYRQ   92 (101)
T ss_dssp             SCCHHHHHHHH
T ss_pred             HHHCCHHHHHH
T ss_conf             84532899999


No 3  
>>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:)
Probab=90.03  E-value=0.49  Score=27.61  Aligned_cols=64  Identities=9%  Similarity=0.102  Sum_probs=53.9

Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             32175998850367799999999860886999999770679999999999999839986887577
Q gi|254780895|r   22 IANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAGLRTTQI   86 (91)
Q Consensus        22 ~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~gLr~T~l   86 (91)
                      -..-.+...+++-..-|+++|+-|..|. |..|+|..|+++..-|..|.+.....+..+-+.+.+
T Consensus        12 ~~~~~~~~rr~yt~efK~~av~~~~~G~-sv~eva~~~gIs~stl~~W~k~~~~~~~~~~~~~~~   75 (87)
T 2elh_A           12 MGTKGKRPLRSLTPRDKIHAIQRIHDGE-SKASVARDIGVPESTLRGWCKNEDKLRFMSRQSATD   75 (87)
T ss_dssp             CCSCCSSCCSSCCHHHHHHHHHHHHHTC-CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             1136998887089999999999987269-999999997969999999999999874320135832


No 4  
>>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Probab=74.50  E-value=4.6  Score=21.99  Aligned_cols=48  Identities=13%  Similarity=0.124  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHHHC-CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH
Q ss_conf             50367799999999860-8869999997706799999999999998399
Q gi|254780895|r   31 RRWVARRKAEVVAAVKG-GLLSLEEACQIYTLTVEEFLSWQASIVQHGL   78 (91)
Q Consensus        31 ~RWVasRKA~VV~aV~~-GLis~~EA~~rY~LS~EEf~~W~~av~~hG~   78 (91)
                      ++|-.-=|+++|+-+.. +=.|..+.++.|+++..-+..|.+....+|.
T Consensus         4 r~ys~EFK~~aV~l~~~~~g~sv~~vA~~~gi~~~tl~~Wvk~~~~~~~   52 (56)
T 2jn6_A            4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN   52 (56)
T ss_dssp             CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf             9899999999999999838983999999969982130399999721345


No 5  
>>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} (A:)
Probab=58.97  E-value=7.8  Score=20.69  Aligned_cols=30  Identities=13%  Similarity=0.200  Sum_probs=23.3

Q ss_pred             HCCCCCHHHHHHHCCCCHHHHHHHHH-HHHH
Q ss_conf             60886999999770679999999999-9998
Q gi|254780895|r   46 KGGLLSLEEACQIYTLTVEEFLSWQA-SIVQ   75 (91)
Q Consensus        46 ~~GLis~~EA~~rY~LS~EEf~~W~~-av~~   75 (91)
                      -+|-.|+++||..|++-.++|..=.. +++.
T Consensus        35 ~~~~~tL~~a~~~~gid~~~ll~~Ln~~i~~   65 (76)
T 2k53_A           35 SSMGESIEDACAVHGIDADKLVKELNEYFEK   65 (76)
T ss_dssp             CCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             6677759999989199999999999999997


No 6  
>>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii} (A:)
Probab=44.89  E-value=17  Score=18.78  Aligned_cols=27  Identities=26%  Similarity=0.190  Sum_probs=22.8

Q ss_pred             HHCCCCCHHHHHHHCCCCHHHHHHHHH
Q ss_conf             860886999999770679999999999
Q gi|254780895|r   45 VKGGLLSLEEACQIYTLTVEEFLSWQA   71 (91)
Q Consensus        45 V~~GLis~~EA~~rY~LS~EEf~~W~~   71 (91)
                      .-+|-.|+++||..|++-.++|..=..
T Consensus        36 ~~~~~~tL~~aa~~~gid~~~ll~~Ln   62 (73)
T 2k5e_A           36 MGAQNESLEQGANAHGLNVEDILRDLN   62 (73)
T ss_dssp             TTGGGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             776668299999993989999999999


No 7  
>>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprotein, polymorphism, DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:)
Probab=44.43  E-value=17  Score=18.73  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             HHHHHHHCCCCHHHHH-HHHHHHHHHCHHHHHHHHHHHH
Q ss_conf             9999977067999999-9999999839986887577763
Q gi|254780895|r   52 LEEACQIYTLTVEEFL-SWQASIVQHGLAGLRTTQIQKY   89 (91)
Q Consensus        52 ~~EA~~rY~LS~EEf~-~W~~av~~hG~~gLr~T~lQ~Y   89 (91)
                      .-|-|-+|+|+.++|. +|..-...++...+....|-.|
T Consensus        50 l~ELC~~y~ldaeelV~eW~AFs~s~~~~~~TvenL~~F   88 (101)
T 2keb_A           50 LVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF   88 (101)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             999998839989999999999986169999888999999


No 8  
>>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon} (A:)
Probab=38.01  E-value=20  Score=18.31  Aligned_cols=18  Identities=44%  Similarity=0.420  Sum_probs=15.0

Q ss_pred             HHHHHHHCCCCCHHHHHH
Q ss_conf             999998608869999997
Q gi|254780895|r   40 EVVAAVKGGLLSLEEACQ   57 (91)
Q Consensus        40 ~VV~aV~~GLis~~EA~~   57 (91)
                      =|-+|+.+||||.+||-.
T Consensus        81 FV~KA~~~gLiTeedA~~   98 (102)
T 2job_A           81 FVRKAFQKGLISQQEANQ   98 (102)
T ss_dssp             HHHHHHHHTCSCHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHH
T ss_conf             999999848865999998


No 9  
>>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A* (A:76-168)
Probab=36.71  E-value=36  Score=16.85  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             CCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             86999999770679999999999999
Q gi|254780895|r   49 LLSLEEACQIYTLTVEEFLSWQASIV   74 (91)
Q Consensus        49 Lis~~EA~~rY~LS~EEf~~W~~av~   74 (91)
                      -.|..|++++.++|.|....|.+|+-
T Consensus         3 ~yt~~evae~~Gv~~e~a~r~WrAlG   28 (93)
T 2ev1_A            3 YVSAREISENYGVDLELLQRVQRAVG   28 (93)
T ss_dssp             EECHHHHHHHHTCCHHHHHHHHHHHC
T ss_pred             EECHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             63499999995969999999999808


No 10 
>>2rn7_A IS629 ORFA; helix, all alpha, unknown function; NMR {Shigella flexneri} (A:)
Probab=36.16  E-value=39  Score=16.65  Aligned_cols=51  Identities=12%  Similarity=0.086  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHHHHHHHHC-------CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf             850367799999999860-------886999999770679999999999999839986
Q gi|254780895|r   30 TRRWVARRKAEVVAAVKG-------GLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG   80 (91)
Q Consensus        30 T~RWVasRKA~VV~aV~~-------GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g   80 (91)
                      .+++..-=|..+|+-|..       +--|..++++.|++|..-+..|.+.+...|...
T Consensus         4 ~r~ys~efK~~aV~l~~e~~~~~~~~g~sv~~vA~~lgis~~~l~~W~k~~~~~~~~~   61 (108)
T 2rn7_A            4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGD   61 (108)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999999999986223466665399997535779899615998730124568


No 11 
>>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:463-584)
Probab=33.25  E-value=40  Score=16.58  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH
Q ss_conf             8869999997706799999999999998399
Q gi|254780895|r   48 GLLSLEEACQIYTLTVEEFLSWQASIVQHGL   78 (91)
Q Consensus        48 GLis~~EA~~rY~LS~EEf~~W~~av~~hG~   78 (91)
                      .|+.....++||+|+++|+.-+..-+..-|.
T Consensus        10 ~lL~~p~v~~rF~l~~~dl~~l~~wl~~agi   40 (122)
T 1w36_C           10 ALLDVPVLAARFDITEEGLRYLRQWVNESGI   40 (122)
T ss_dssp             HHTTSHHHHHHTTCCHHHHHHHHHHHHHHTC
T ss_pred             HHHCCHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9975834310347998899999999998176


No 12 
>>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=31.77  E-value=46  Score=16.23  Aligned_cols=26  Identities=12%  Similarity=-0.069  Sum_probs=23.1

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             08869999997706799999999999
Q gi|254780895|r   47 GGLLSLEEACQIYTLTVEEFLSWQAS   72 (91)
Q Consensus        47 ~GLis~~EA~~rY~LS~EEf~~W~~a   72 (91)
                      ..+|+.+|+|+..++|..-|..|...
T Consensus         8 ~~~l~~~eva~~lgis~~ti~~~~~~   33 (66)
T 1z4h_A            8 DSLVDLKFIMADTGFGKTFIYDRIKS   33 (66)
T ss_dssp             SSEECHHHHHHHHSSCHHHHHHHHHH
T ss_pred             CCEECHHHHHHHHCCCHHHHHHHHHC
T ss_conf             64164999999979789998667318


No 13 
>>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.12A {Bacteroides fragilis nctc 9343} (A:1-225,A:338-425)
Probab=31.45  E-value=45  Score=16.28  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHCCCCHHHH
Q ss_conf             7999999998608869999997706799999
Q gi|254780895|r   36 RRKAEVVAAVKGGLLSLEEACQIYTLTVEEF   66 (91)
Q Consensus        36 sRKA~VV~aV~~GLis~~EA~~rY~LS~EEf   66 (91)
                      .-=.+.+.|+.-|+|+.+|+.+|-..+..-+
T Consensus        69 ~~L~A~~~A~e~G~I~~~e~~~R~~~tL~tL   99 (313)
T 3eu8_A           69 FGIXAILAGIDRGYVSREEGLRRXEKIVGFL   99 (313)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             9999999999838878999999999999999


No 14 
>>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} (B:)
Probab=27.34  E-value=25  Score=17.75  Aligned_cols=16  Identities=56%  Similarity=0.779  Sum_probs=14.0

Q ss_pred             CCCCCCCCHHHCCCCC
Q ss_conf             7999833532175998
Q gi|254780895|r   14 GPDGSPLTIANLPPPN   29 (91)
Q Consensus        14 gPdGs~lt~aDLPp~~   29 (91)
                      ||.|||-|.|.-||.-
T Consensus         1 gplgspntgakqppsy   16 (26)
T 2jmf_B            1 GPLGSPNTGAKQPPSY   16 (26)
T ss_pred             CCCCCCCCCCCCCCCH
T ss_conf             9888888787789888


No 15 
>>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:)
Probab=26.10  E-value=51  Score=15.95  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=21.8

Q ss_pred             CCCCHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             8869999997706799999999999
Q gi|254780895|r   48 GLLSLEEACQIYTLTVEEFLSWQAS   72 (91)
Q Consensus        48 GLis~~EA~~rY~LS~EEf~~W~~a   72 (91)
                      -++|.+|||+-+++|..-+..|...
T Consensus        15 ~~ltv~Eaa~ylgis~~~ly~l~~~   39 (70)
T 1y6u_A           15 YTLTIEEASKYFRIGENKLRRLAEE   39 (70)
T ss_dssp             SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HEECHHHHHHHHCCCHHHHHHHHHH
T ss_conf             4057999999955049999999985


No 16 
>>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} (A:)
Probab=25.13  E-value=58  Score=15.62  Aligned_cols=21  Identities=24%  Similarity=0.675  Sum_probs=17.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCHH
Q ss_conf             067999999999999983998
Q gi|254780895|r   59 YTLTVEEFLSWQASIVQHGLA   79 (91)
Q Consensus        59 Y~LS~EEf~~W~~av~~hG~~   79 (91)
                      =..+++||..|..++.+.|..
T Consensus       114 ~~fte~E~~~w~~~~~~~~~~  134 (153)
T 2bze_A          114 QEFTESEFMKWKEAMFSAGMQ  134 (153)
T ss_dssp             SCCCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999966999


No 17 
>>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* (A:59-138)
Probab=24.88  E-value=60  Score=15.56  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=23.6

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             0886999999770679999999999999
Q gi|254780895|r   47 GGLLSLEEACQIYTLTVEEFLSWQASIV   74 (91)
Q Consensus        47 ~GLis~~EA~~rY~LS~EEf~~W~~av~   74 (91)
                      |-..|-.|.+++|++..|-|.--|+|+.
T Consensus         6 GtyVSaReise~~Gidl~LlqR~qRA~G   33 (80)
T 1y10_A            6 GTYVSAREISENYGVDLELLQRVQRAVG   33 (80)
T ss_dssp             SCEECHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred             CCEEEHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             7564399999983999999999999808


No 18 
>>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* (A:143-257)
Probab=24.65  E-value=55  Score=15.77  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHC
Q ss_conf             799999999999998399868875777633
Q gi|254780895|r   61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYR   90 (91)
Q Consensus        61 LS~EEf~~W~~av~~hG~~gLr~T~lQ~YR   90 (91)
                      ||+||+.-.+....+.|..|    .|+-||
T Consensus        76 lseeel~~Yv~~f~~sGf~G----~lNwYR  101 (115)
T 2cjp_A           76 LSEEELDYYANKFEQTGFTG----AVNYYR  101 (115)
T ss_dssp             SCHHHHHHHHHHHHHHCSHH----HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCC----CCCCCC
T ss_conf             55567899987531554211----222112


No 19 
>>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens} (A:)
Probab=24.50  E-value=45  Score=16.29  Aligned_cols=23  Identities=9%  Similarity=0.176  Sum_probs=19.9

Q ss_pred             HCCCCCHHHHHHHCCCCHHHHHH
Q ss_conf             60886999999770679999999
Q gi|254780895|r   46 KGGLLSLEEACQIYTLTVEEFLS   68 (91)
Q Consensus        46 ~~GLis~~EA~~rY~LS~EEf~~   68 (91)
                      .+-|||..||.+-|.|+..+|..
T Consensus        11 k~~lITkteAk~eYlL~d~DLe~   33 (101)
T 2enk_A           11 QNNFITGVRAINEFCLKSSDLEQ   33 (101)
T ss_dssp             CCSEEEHHHHHHHTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             64423389999987788466876


No 20 
>>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* (A:365-481)
Probab=23.94  E-value=42  Score=16.47  Aligned_cols=26  Identities=27%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHC
Q ss_conf             799999999999998399868875777633
Q gi|254780895|r   61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYR   90 (91)
Q Consensus        61 LS~EEf~~W~~av~~hG~~gLr~T~lQ~YR   90 (91)
                      ||+||+.-......+.|..|    -|+-||
T Consensus        78 lteeeL~~Yv~~f~r~Gf~G----plNwYR  103 (117)
T 3i28_A           78 VTEEEIQFYVQQFKKSGFRG----PLNWYR  103 (117)
T ss_dssp             CCHHHHHHHHHHHTTTTTHH----HHHTTS
T ss_pred             CCHHHHHHHHHHHHHCCCHH----HHHHHH
T ss_conf             47999999999864202035----789999


No 21 
>>2aj4_A Galactokinase; galactosemia, transcription, transferase; HET: GLA ANP; 2.40A {Saccharomyces cerevisiae} (A:288-436)
Probab=22.61  E-value=67  Score=15.26  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=22.8

Q ss_pred             HHHHHHHH---CCCCCHHHHHHHCCCCHHHHHH
Q ss_conf             99999986---0886999999770679999999
Q gi|254780895|r   39 AEVVAAVK---GGLLSLEEACQIYTLTVEEFLS   68 (91)
Q Consensus        39 A~VV~aV~---~GLis~~EA~~rY~LS~EEf~~   68 (91)
                      ..+|....   -+-.|.+|.|+--++|.|||..
T Consensus        76 l~~ve~~l~~~~~gYT~eEi~~~Lgis~~el~~  108 (149)
T 2aj4_A           76 LVLVEESLANKKQGFSVDDVAQSLNCSREEFTR  108 (149)
T ss_dssp             HHHHHHHHGGGTTCBCHHHHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             877777664202357788898750454777666


No 22 
>>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} (A:)
Probab=21.38  E-value=25  Score=17.74  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=16.7

Q ss_pred             CCCCCCCCEEECCCCCCCCH
Q ss_conf             42032322677799983353
Q gi|254780895|r    3 EKIQSHMKYVIGPDGSPLTI   22 (91)
Q Consensus         3 e~~~~~~~~V~gPdGs~lt~   22 (91)
                      +.-+|.+..++.|.|+++|+
T Consensus        26 ~~enp~v~~~vl~~gs~VT~   45 (45)
T 1hym_A           26 ERQNPNVKAVILEEGTPVTK   45 (45)
T ss_dssp             HHHCTTCEEEEEECCSCCCC
T ss_pred             HHHCCCCEEEEEECCCCCCC
T ss_conf             72099820798505863669


No 23 
>>2j0n_A Invasin IPAD, IPAD; T3SS, plasmid, virulence, type III secretion, cell invasion; 2.10A {Shigella flexneri} (A:)
Probab=20.90  E-value=60  Score=15.57  Aligned_cols=31  Identities=23%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHHHCHH--HHHHHHHHHHCC
Q ss_conf             7999999999999983998--688757776339
Q gi|254780895|r   61 LTVEEFLSWQASIVQHGLA--GLRTTQIQKYRE   91 (91)
Q Consensus        61 LS~EEf~~W~~av~~hG~~--gLr~T~lQ~YRq   91 (91)
                      ++.-+|-+|+.+++..+..  .---+-.|+|||
T Consensus       139 i~~a~yqaw~a~f~a~~~~~qs~~q~l~qkys~  171 (200)
T 2j0n_A          139 LDNAKYQAWNAGFSAEDETMKNNLQTLVQKYSN  171 (200)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             029999999999878998898799999999873


No 24 
>>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} (A:)
Probab=20.55  E-value=69  Score=15.21  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             770679999999999999839986887
Q gi|254780895|r   57 QIYTLTVEEFLSWQASIVQHGLAGLRT   83 (91)
Q Consensus        57 ~rY~LS~EEf~~W~~av~~hG~~gLr~   83 (91)
                      -+|.|+.+|+....+|.| |-.+.|..
T Consensus        31 ~~y~L~~~El~~f~~AaD-HR~AELtm   56 (72)
T 1jw2_A           31 NKYELSDNELAVFYSAAD-HRLAELTM   56 (72)
T ss_dssp             HHHHSCHHHHHHHHHHHH-HHHHHHHS
T ss_pred             HHCCCCHHHHHHHHHHHH-HHHHHHHH
T ss_conf             105599899999999999-98999971


No 25 
>>3hhw_K Nucleoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 2qvj_A* 3hhz_K 2gic_A (K:215-421)
Probab=20.12  E-value=29  Score=17.36  Aligned_cols=24  Identities=21%  Similarity=0.596  Sum_probs=20.9

Q ss_pred             CCCCCHHHHHHHCCCCHHHHHHHH
Q ss_conf             088699999977067999999999
Q gi|254780895|r   47 GGLLSLEEACQIYTLTVEEFLSWQ   70 (91)
Q Consensus        47 ~GLis~~EA~~rY~LS~EEf~~W~   70 (91)
                      .||.++...|+--+++.+||..|.
T Consensus        11 aaL~sl~~~~~~~g~~~~~~~~w~   34 (207)
T 3hhw_K           11 AALATFGHLCKITGMSTEDVTTWI   34 (207)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             888989999998299899977762


Done!