Query         gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs    84 out of 86
Neff          2.7 
Searched_HMMs 23785
Date          Tue May 31 21:41:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780895.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2jrt_A Uncharacterized protein 100.0       0       0  293.1   5.7   91    1-91      1-91  (95)
  2 2oa4_A SIR5; structure, struct 100.0 8.7E-40 3.6E-44  250.9   5.7   91    1-91      2-92  (101)
  3 2jn6_A Protein CGL2762, transp  71.9     4.3 0.00018   21.3   4.2   48   30-77      3-51  (97)
  4 2elh_A CG11849-PA, LD40883P; s  63.6     9.6  0.0004   19.3   6.9   53   23-76     13-65  (87)
  5 2k53_A A3DK08 protein; NESG, C  46.6     9.6 0.00041   19.3   2.3   23   50-72     39-61  (76)
  6 1tty_A Sigma-A, RNA polymerase  44.3      20 0.00085   17.4   3.7   42   37-83     22-68  (87)
  7 2k5e_A Uncharacterized protein  39.7      15 0.00063   18.1   2.4   23   50-72     41-63  (73)
  8 2keb_A DNA polymerase subunit   36.3      22 0.00093   17.2   2.9   36   52-87     50-86  (101)
  9 2job_A Antilipopolysaccharide   33.7      18 0.00076   17.7   2.1   19   39-57     80-98  (102)
 10 2p12_A Hypothetical protein DU  33.2      31  0.0013   16.4   3.3   42   33-78    117-158 (176)
 11 3eu8_A Putative glucoamylase;   30.2      34  0.0014   16.1   3.0   29   38-66     71-99  (430)
 12 1hym_A CMTI-V, hydrolyzed cucu  29.7      10 0.00042   19.2   0.2   20    3-22     26-45  (45)
 13 1hlv_A CENP-B, major centromer  29.6      35  0.0015   16.0   5.9   48   28-75      3-51  (131)
 14 2jmf_B Neurogenic locus notch   27.0      18 0.00076   17.7   1.1   15   14-28      1-15  (26)
 15 2bze_A KIAA0252 protein; human  21.9      49  0.0021   15.2   2.7   23   57-79    112-134 (153)
 16 3hf5_A 4-methylmuconolactone m  21.1      16 0.00065   18.1  -0.1   31   57-90     19-49  (116)
 17 3ctw_B RCDA; protein binding;   20.8      11 0.00048   18.8  -0.9   29   41-69     83-112 (169)
 18 3hqi_A Speckle-type POZ protei  20.6      53  0.0022   15.0   3.3   49   40-88    248-299 (312)

No 1  
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=100.00  E-value=0  Score=293.11  Aligned_cols=91  Identities=47%  Similarity=0.709  Sum_probs=86.3

Q ss_pred             CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf             96420323226777999833532175998850367799999999860886999999770679999999999999839986
Q gi|254780895|r    1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG   80 (91)
Q Consensus         1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g   80 (91)
                      |--..-..|++|+||||++||++||||+||+||||||||+||+||++||||++|||+||+||+|||.+|+++|++||++|
T Consensus         1 Mylkkv~GPr~VtlPDGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g   80 (95)
T 2jrt_A            1 MYLKRVDGPRQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA   80 (95)
T ss_dssp             CCSCCCCSCSEEECTTSCEEETTTSCCSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTS
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98555799852567999845413498998752035667899999971777999999996888999999999999975889


Q ss_pred             HHHHHHHHHCC
Q ss_conf             88757776339
Q gi|254780895|r   81 LRTTQIQKYRE   91 (91)
Q Consensus        81 Lr~T~lQ~YRq   91 (91)
                      ||+|+||+|||
T Consensus        81 Lr~T~lQ~yRq   91 (95)
T 2jrt_A           81 LKVTMIQKYRQ   91 (95)
T ss_dssp             CCTTHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             98999999998


No 2  
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=100.00  E-value=8.7e-40  Score=250.88  Aligned_cols=91  Identities=47%  Similarity=0.710  Sum_probs=86.1

Q ss_pred             CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH
Q ss_conf             96420323226777999833532175998850367799999999860886999999770679999999999999839986
Q gi|254780895|r    1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG   80 (91)
Q Consensus         1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g   80 (91)
                      |-..--..|++|+||||++||++||||++|+||||+|||+||++|.+|+||++|||++|+||.+||.+|++++++||++|
T Consensus         2 m~~~~~~gpr~v~~pdG~~~t~adlP~~~trRWvA~RKa~VV~aV~~G~~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~a   81 (101)
T 2oa4_A            2 MFLRKVEGPRSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA   81 (101)
T ss_dssp             CCSSCCSSSCEEECSSSCEEETTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSS
T ss_pred             CCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             74245899852468999813011299965603269999999999983845799999883999999999999999984999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             88757776339
Q gi|254780895|r   81 LRTTQIQKYRE   91 (91)
Q Consensus        81 Lr~T~lQ~YRq   91 (91)
                      ||+|+||+|||
T Consensus        82 LRatr~q~yRq   92 (101)
T 2oa4_A           82 LKVTALKKYRQ   92 (101)
T ss_dssp             SCCHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             98827899999


No 3  
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=71.85  E-value=4.3  Score=21.27  Aligned_cols=48  Identities=15%  Similarity=0.165  Sum_probs=39.3

Q ss_pred             CCCHHHHHHHHHHHHHHCC-CCCHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf             8503677999999998608-86999999770679999999999999839
Q gi|254780895|r   30 TRRWVARRKAEVVAAVKGG-LLSLEEACQIYTLTVEEFLSWQASIVQHG   77 (91)
Q Consensus        30 T~RWVasRKA~VV~aV~~G-Lis~~EA~~rY~LS~EEf~~W~~av~~hG   77 (91)
                      .+++-..-|.++|+-+.-+ =.|..++++.|++|..-+..|.+.....|
T Consensus         3 rr~Ys~efK~~aV~l~~~~~g~s~~~vA~~~GIs~~tl~~W~k~~~~~~   51 (97)
T 2jn6_A            3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNH   51 (97)
T ss_dssp             CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf             5989999999999999984998599999997899574468999985424


No 4  
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.63  E-value=9.6  Score=19.27  Aligned_cols=53  Identities=11%  Similarity=0.117  Sum_probs=44.7

Q ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             217599885036779999999986088699999977067999999999999983
Q gi|254780895|r   23 ANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQH   76 (91)
Q Consensus        23 aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~h   76 (91)
                      +.-|...-+.|..--|.++|+.|..| .|..+.++.|+++.--+..|.+..++-
T Consensus        13 ~~~~kr~rr~~t~e~K~~iv~~~e~G-~s~~~vAre~gi~~stl~~W~k~~~~~   65 (87)
T 2elh_A           13 GTKGKRPLRSLTPRDKIHAIQRIHDG-ESKASVARDIGVPESTLRGWCKNEDKL   65 (87)
T ss_dssp             CSCCSSCCSSCCHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             12599888718999999999999879-999999999797998999999999998


No 5  
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=46.65  E-value=9.6  Score=19.27  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=19.1

Q ss_pred             CCHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             69999997706799999999999
Q gi|254780895|r   50 LSLEEACQIYTLTVEEFLSWQAS   72 (91)
Q Consensus        50 is~~EA~~rY~LS~EEf~~W~~a   72 (91)
                      .|++|||..|++..|+|..=...
T Consensus        39 ~tL~eaa~~~gid~~~ll~eLn~   61 (76)
T 2k53_A           39 ESIEDACAVHGIDADKLVKELNE   61 (76)
T ss_dssp             SBHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             70999999949799999999999


No 6  
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=44.26  E-value=20  Score=17.39  Aligned_cols=42  Identities=36%  Similarity=0.418  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHCCC-----CCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHH
Q ss_conf             9999999986088-----6999999770679999999999999839986887
Q gi|254780895|r   37 RKAEVVAAVKGGL-----LSLEEACQIYTLTVEEFLSWQASIVQHGLAGLRT   83 (91)
Q Consensus        37 RKA~VV~aV~~GL-----is~~EA~~rY~LS~EEf~~W~~av~~hG~~gLr~   83 (91)
                      |-..|+. -+|||     .|++|..+.+++|.|    +++-+..-.+.-||.
T Consensus        22 rE~~Vi~-~rfGL~~~~~~Tl~eI~~~lgiSre----RVRQie~~Al~kLr~   68 (87)
T 1tty_A           22 REAMVLR-MRYGLLDGKPKTLEEVGQYFNVTRE----RIRQIEVKALRKLRH   68 (87)
T ss_dssp             HHHHHHH-HHHTTTTSSCCCHHHHHHHHTCCHH----HHHHHHHHHHHHHBT
T ss_pred             HHHHHHH-HHHCCCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHC
T ss_conf             9999999-9807889996579999989598899----999999999999867


No 7  
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=39.65  E-value=15  Score=18.14  Aligned_cols=23  Identities=30%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             CCHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             69999997706799999999999
Q gi|254780895|r   50 LSLEEACQIYTLTVEEFLSWQAS   72 (91)
Q Consensus        50 is~~EA~~rY~LS~EEf~~W~~a   72 (91)
                      .|++|||+.|++..|+|..=..+
T Consensus        41 etleeaa~~hgiD~d~Ll~eLN~   63 (73)
T 2k5e_A           41 ESLEQGANAHGLNVEDILRDLNA   63 (73)
T ss_dssp             SBHHHHHHHTTCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             67999999949799999999999


No 8  
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.29  E-value=22  Score=17.17  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             HHHHHHHCCCCHHHHH-HHHHHHHHHCHHHHHHHHHH
Q ss_conf             9999977067999999-99999998399868875777
Q gi|254780895|r   52 LEEACQIYTLTVEEFL-SWQASIVQHGLAGLRTTQIQ   87 (91)
Q Consensus        52 ~~EA~~rY~LS~EEf~-~W~~av~~hG~~gLr~T~lQ   87 (91)
                      .-|-|.+|+|+.+||. +|.+--..|+-..+-...|-
T Consensus        50 c~ELC~~y~lda~e~VeeWmAFs~S~~g~~~T~enL~   86 (101)
T 2keb_A           50 LVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILN   86 (101)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             9999998399889999999999853799998889999


No 9  
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=33.70  E-value=18  Score=17.67  Aligned_cols=19  Identities=42%  Similarity=0.393  Sum_probs=15.3

Q ss_pred             HHHHHHHHCCCCCHHHHHH
Q ss_conf             9999998608869999997
Q gi|254780895|r   39 AEVVAAVKGGLLSLEEACQ   57 (91)
Q Consensus        39 A~VV~aV~~GLis~~EA~~   57 (91)
                      --|-+|..+||||.+||-.
T Consensus        80 DFV~KA~~~gLiTeedA~~   98 (102)
T 2job_A           80 DFVRKAFQKGLISQQEANQ   98 (102)
T ss_dssp             HHHHHHHHHTCSCHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHH
T ss_conf             9999999848865999998


No 10 
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=33.25  E-value=31  Score=16.37  Aligned_cols=42  Identities=24%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH
Q ss_conf             3677999999998608869999997706799999999999998399
Q gi|254780895|r   33 WVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGL   78 (91)
Q Consensus        33 WVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~   78 (91)
                      |-.--.-|.-.|+..|+||.++|-.-+.-.    ..=+..|.+||-
T Consensus       117 ~~llD~DEL~~A~~~GlIs~e~ae~Al~~a----~~avegIa~~g~  158 (176)
T 2p12_A          117 TELLDVDELMEAHTTGLLDTATAEQAILTA----TTAIDGIAAHGH  158 (176)
T ss_dssp             EEEECHHHHHHHHHTTSSCHHHHHHHHHHH----HHHHHHHHHTTT
T ss_pred             EEEECHHHHHHHHHCCCCCHHHHHHHHHHH----HHHHHHHHHCCC
T ss_conf             599659999999986998999999999999----999999998479


No 11 
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.12A {Bacteroides fragilis nctc 9343}
Probab=30.22  E-value=34  Score=16.09  Aligned_cols=29  Identities=21%  Similarity=0.220  Sum_probs=23.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHCCCCHHHH
Q ss_conf             99999998608869999997706799999
Q gi|254780895|r   38 KAEVVAAVKGGLLSLEEACQIYTLTVEEF   66 (91)
Q Consensus        38 KA~VV~aV~~GLis~~EA~~rY~LS~EEf   66 (91)
                      =.+.|.|+..|.|+.+||++|-.-+..-+
T Consensus        71 L~a~~vA~e~G~I~~~ea~~R~~~tL~tl   99 (430)
T 3eu8_A           71 IMAILAGIDRGYVSREEGLRRMEKIVGFL   99 (430)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999828867999999999999999


No 12 
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=29.71  E-value=10  Score=19.18  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=16.8

Q ss_pred             CCCCCCCCEEECCCCCCCCH
Q ss_conf             42032322677799983353
Q gi|254780895|r    3 EKIQSHMKYVIGPDGSPLTI   22 (91)
Q Consensus         3 e~~~~~~~~V~gPdGs~lt~   22 (91)
                      +.-+|.+..++.|.||++|+
T Consensus        26 ~~enP~v~~~vl~~gs~VT~   45 (45)
T 1hym_A           26 ERQNPNVKAVILEEGTPVTK   45 (45)
T ss_dssp             HHHCTTCEEEEEECCSCCCC
T ss_pred             HHHCCCCEEEEECCCCCCCC
T ss_conf             97789963898118997779


No 13 
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=29.57  E-value=35  Score=16.00  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             988503677999999998608-869999997706799999999999998
Q gi|254780895|r   28 PNTRRWVARRKAEVVAAVKGG-LLSLEEACQIYTLTVEEFLSWQASIVQ   75 (91)
Q Consensus        28 ~~T~RWVasRKA~VV~aV~~G-Lis~~EA~~rY~LS~EEf~~W~~av~~   75 (91)
                      |--+.|...-|.+|+..+..| -++..++++.|+++..-...|..--+.
T Consensus         3 ~kRk~~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~k~~   51 (131)
T 1hlv_A            3 PKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRA   51 (131)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             7423189999999999999778888999999989199999999924799


No 14 
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=27.01  E-value=18  Score=17.69  Aligned_cols=15  Identities=60%  Similarity=0.862  Sum_probs=13.7

Q ss_pred             CCCCCCCCHHHCCCC
Q ss_conf             799983353217599
Q gi|254780895|r   14 GPDGSPLTIANLPPP   28 (91)
Q Consensus        14 gPdGs~lt~aDLPp~   28 (91)
                      ||.|||-|.|.-||.
T Consensus         1 gplgspntgakqpps   15 (26)
T 2jmf_B            1 GPLGSPNTGAKQPPS   15 (26)
T ss_pred             CCCCCCCCCCCCCCC
T ss_conf             988888878778988


No 15 
>2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 PDB: 2db9_A
Probab=21.89  E-value=49  Score=15.15  Aligned_cols=23  Identities=22%  Similarity=0.579  Sum_probs=17.8

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCHH
Q ss_conf             77067999999999999983998
Q gi|254780895|r   57 QIYTLTVEEFLSWQASIVQHGLA   79 (91)
Q Consensus        57 ~rY~LS~EEf~~W~~av~~hG~~   79 (91)
                      .-=..+++||..|...+...|..
T Consensus       112 SN~~fte~E~~~w~~~~~~~~~~  134 (153)
T 2bze_A          112 SNQEFTESEFMKWKEAMFSAGMQ  134 (153)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTCC
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             19999999999999999976999


No 16 
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=21.12  E-value=16  Score=18.06  Aligned_cols=31  Identities=16%  Similarity=0.139  Sum_probs=20.1

Q ss_pred             HHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHC
Q ss_conf             7706799999999999998399868875777633
Q gi|254780895|r   57 QIYTLTVEEFLSWQASIVQHGLAGLRTTQIQKYR   90 (91)
Q Consensus        57 ~rY~LS~EEf~~W~~av~~hG~~gLr~T~lQ~YR   90 (91)
                      ++=+||.|||..|-.   .|+.-+.+.--+.+|.
T Consensus        19 Rk~gls~eeF~~yw~---~Hapl~~~~pgl~~y~   49 (116)
T 3hf5_A           19 KPESMSHEQFRKECV---VHFQMSAGMPGLHKYE   49 (116)
T ss_dssp             CCTTSCHHHHHHHHH---HHHHHTTTCTTCSEEE
T ss_pred             CCCCCCHHHHHHHHH---HHHHHHHHCCCCCCEE
T ss_conf             499989999999999---9999986486733089


No 17 
>3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus}
Probab=20.82  E-value=11  Score=18.84  Aligned_cols=29  Identities=34%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             HHHHHHCCCCCHHHHH-HHCCCCHHHHHHH
Q ss_conf             9999860886999999-7706799999999
Q gi|254780895|r   41 VVAAVKGGLLSLEEAC-QIYTLTVEEFLSW   69 (91)
Q Consensus        41 VV~aV~~GLis~~EA~-~rY~LS~EEf~~W   69 (91)
                      +-+||+-|=||.++|| +.|.|+.++-.++
T Consensus        83 lqRAv~eGEMt~eqa~~ek~rl~~~~~~~~  112 (169)
T 3ctw_B           83 VQRAVREGEMPPEAACAEAYRLAEEAPADG  112 (169)
T ss_dssp             HHHHHHTTSSCTTTTSSSCC----------
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             999998489898988545224688899985


No 18 
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=20.59  E-value=53  Score=14.99  Aligned_cols=49  Identities=24%  Similarity=0.166  Sum_probs=41.4

Q ss_pred             HHHHHHHCCCCCHHHHHHHC---CCCHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf             99999860886999999770---67999999999999983998688757776
Q gi|254780895|r   40 EVVAAVKGGLLSLEEACQIY---TLTVEEFLSWQASIVQHGLAGLRTTQIQK   88 (91)
Q Consensus        40 ~VV~aV~~GLis~~EA~~rY---~LS~EEf~~W~~av~~hG~~gLr~T~lQ~   88 (91)
                      -..+|-.+++-.+.++|+.|   .|+.+-........++|+...|+-..++-
T Consensus       248 ll~~A~~~~i~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~f  299 (312)
T 3hqi_A          248 LLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDF  299 (312)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             9999988593899999999998639999999999999983909999999999


Done!