Query gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 91 No_of_seqs 84 out of 86 Neff 2.7 Searched_HMMs 23785 Date Tue May 31 21:41:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780895.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2jrt_A Uncharacterized protein 100.0 0 0 293.1 5.7 91 1-91 1-91 (95) 2 2oa4_A SIR5; structure, struct 100.0 8.7E-40 3.6E-44 250.9 5.7 91 1-91 2-92 (101) 3 2jn6_A Protein CGL2762, transp 71.9 4.3 0.00018 21.3 4.2 48 30-77 3-51 (97) 4 2elh_A CG11849-PA, LD40883P; s 63.6 9.6 0.0004 19.3 6.9 53 23-76 13-65 (87) 5 2k53_A A3DK08 protein; NESG, C 46.6 9.6 0.00041 19.3 2.3 23 50-72 39-61 (76) 6 1tty_A Sigma-A, RNA polymerase 44.3 20 0.00085 17.4 3.7 42 37-83 22-68 (87) 7 2k5e_A Uncharacterized protein 39.7 15 0.00063 18.1 2.4 23 50-72 41-63 (73) 8 2keb_A DNA polymerase subunit 36.3 22 0.00093 17.2 2.9 36 52-87 50-86 (101) 9 2job_A Antilipopolysaccharide 33.7 18 0.00076 17.7 2.1 19 39-57 80-98 (102) 10 2p12_A Hypothetical protein DU 33.2 31 0.0013 16.4 3.3 42 33-78 117-158 (176) 11 3eu8_A Putative glucoamylase; 30.2 34 0.0014 16.1 3.0 29 38-66 71-99 (430) 12 1hym_A CMTI-V, hydrolyzed cucu 29.7 10 0.00042 19.2 0.2 20 3-22 26-45 (45) 13 1hlv_A CENP-B, major centromer 29.6 35 0.0015 16.0 5.9 48 28-75 3-51 (131) 14 2jmf_B Neurogenic locus notch 27.0 18 0.00076 17.7 1.1 15 14-28 1-15 (26) 15 2bze_A KIAA0252 protein; human 21.9 49 0.0021 15.2 2.7 23 57-79 112-134 (153) 16 3hf5_A 4-methylmuconolactone m 21.1 16 0.00065 18.1 -0.1 31 57-90 19-49 (116) 17 3ctw_B RCDA; protein binding; 20.8 11 0.00048 18.8 -0.9 29 41-69 83-112 (169) 18 3hqi_A Speckle-type POZ protei 20.6 53 0.0022 15.0 3.3 49 40-88 248-299 (312) No 1 >2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides} Probab=100.00 E-value=0 Score=293.11 Aligned_cols=91 Identities=47% Similarity=0.709 Sum_probs=86.3 Q ss_pred CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH Q ss_conf 96420323226777999833532175998850367799999999860886999999770679999999999999839986 Q gi|254780895|r 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG 80 (91) Q Consensus 1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (91) |--..-..|++|+||||++||++||||+||+||||||||+||+||++||||++|||+||+||+|||.+|+++|++||++| T Consensus 1 Mylkkv~GPr~VtlPDGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (95) T 2jrt_A 1 MYLKRVDGPRQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKA 80 (95) T ss_dssp CCSCCCCSCSEEECTTSCEEETTTSCCSSCCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTS T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 98555799852567999845413498998752035667899999971777999999996888999999999999975889 Q ss_pred HHHHHHHHHCC Q ss_conf 88757776339 Q gi|254780895|r 81 LRTTQIQKYRE 91 (91) Q Consensus 81 Lr~T~lQ~YRq 91 (91) ||+|+||+||| T Consensus 81 Lr~T~lQ~yRq 91 (95) T 2jrt_A 81 LKVTMIQKYRQ 91 (95) T ss_dssp CCTTHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 98999999998 No 2 >2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3 Probab=100.00 E-value=8.7e-40 Score=250.88 Aligned_cols=91 Identities=47% Similarity=0.710 Sum_probs=86.1 Q ss_pred CCCCCCCCCCEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCHHH Q ss_conf 96420323226777999833532175998850367799999999860886999999770679999999999999839986 Q gi|254780895|r 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGLAG 80 (91) Q Consensus 1 m~e~~~~~~~~V~gPdGs~lt~aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~~g 80 (91) |-..--..|++|+||||++||++||||++|+||||+|||+||++|.+|+||++|||++|+||.+||.+|++++++||++| T Consensus 2 m~~~~~~gpr~v~~pdG~~~t~adlP~~~trRWvA~RKa~VV~aV~~G~~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~a 81 (101) T 2oa4_A 2 MFLRKVEGPRSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDA 81 (101) T ss_dssp CCSSCCSSSCEEECSSSCEEETTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSS T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 74245899852468999813011299965603269999999999983845799999883999999999999999984999 Q ss_pred HHHHHHHHHCC Q ss_conf 88757776339 Q gi|254780895|r 81 LRTTQIQKYRE 91 (91) Q Consensus 81 Lr~T~lQ~YRq 91 (91) ||+|+||+||| T Consensus 82 LRatr~q~yRq 92 (101) T 2oa4_A 82 LKVTALKKYRQ 92 (101) T ss_dssp SCCHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 98827899999 No 3 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Probab=71.85 E-value=4.3 Score=21.27 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=39.3 Q ss_pred CCCHHHHHHHHHHHHHHCC-CCCHHHHHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 8503677999999998608-86999999770679999999999999839 Q gi|254780895|r 30 TRRWVARRKAEVVAAVKGG-LLSLEEACQIYTLTVEEFLSWQASIVQHG 77 (91) Q Consensus 30 T~RWVasRKA~VV~aV~~G-Lis~~EA~~rY~LS~EEf~~W~~av~~hG 77 (91) .+++-..-|.++|+-+.-+ =.|..++++.|++|..-+..|.+.....| T Consensus 3 rr~Ys~efK~~aV~l~~~~~g~s~~~vA~~~GIs~~tl~~W~k~~~~~~ 51 (97) T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97) T ss_dssp CCCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCC T ss_conf 5989999999999999984998599999997899574468999985424 No 4 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Probab=63.63 E-value=9.6 Score=19.27 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=44.7 Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 217599885036779999999986088699999977067999999999999983 Q gi|254780895|r 23 ANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQH 76 (91) Q Consensus 23 aDLPp~~T~RWVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~h 76 (91) +.-|...-+.|..--|.++|+.|..| .|..+.++.|+++.--+..|.+..++- T Consensus 13 ~~~~kr~rr~~t~e~K~~iv~~~e~G-~s~~~vAre~gi~~stl~~W~k~~~~~ 65 (87) T 2elh_A 13 GTKGKRPLRSLTPRDKIHAIQRIHDG-ESKASVARDIGVPESTLRGWCKNEDKL 65 (87) T ss_dssp CSCCSSCCSSCCHHHHHHHHHHHHHT-CCHHHHHHHHTCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 12599888718999999999999879-999999999797998999999999998 No 5 >2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} Probab=46.65 E-value=9.6 Score=19.27 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.1 Q ss_pred CCHHHHHHHCCCCHHHHHHHHHH Q ss_conf 69999997706799999999999 Q gi|254780895|r 50 LSLEEACQIYTLTVEEFLSWQAS 72 (91) Q Consensus 50 is~~EA~~rY~LS~EEf~~W~~a 72 (91) .|++|||..|++..|+|..=... T Consensus 39 ~tL~eaa~~~gid~~~ll~eLn~ 61 (76) T 2k53_A 39 ESIEDACAVHGIDADKLVKELNE 61 (76) T ss_dssp SBHHHHHHHHTCCHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHH T ss_conf 70999999949799999999999 No 6 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=44.26 E-value=20 Score=17.39 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=32.8 Q ss_pred HHHHHHHHHHCCC-----CCHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHH Q ss_conf 9999999986088-----6999999770679999999999999839986887 Q gi|254780895|r 37 RKAEVVAAVKGGL-----LSLEEACQIYTLTVEEFLSWQASIVQHGLAGLRT 83 (91) Q Consensus 37 RKA~VV~aV~~GL-----is~~EA~~rY~LS~EEf~~W~~av~~hG~~gLr~ 83 (91) |-..|+. -+||| .|++|..+.+++|.| +++-+..-.+.-||. T Consensus 22 rE~~Vi~-~rfGL~~~~~~Tl~eI~~~lgiSre----RVRQie~~Al~kLr~ 68 (87) T 1tty_A 22 REAMVLR-MRYGLLDGKPKTLEEVGQYFNVTRE----RIRQIEVKALRKLRH 68 (87) T ss_dssp HHHHHHH-HHHTTTTSSCCCHHHHHHHHTCCHH----HHHHHHHHHHHHHBT T ss_pred HHHHHHH-HHHCCCCCCCCCHHHHHHHHCCCHH----HHHHHHHHHHHHHHC T ss_conf 9999999-9807889996579999989598899----999999999999867 No 7 >2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii} Probab=39.65 E-value=15 Score=18.14 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.0 Q ss_pred CCHHHHHHHCCCCHHHHHHHHHH Q ss_conf 69999997706799999999999 Q gi|254780895|r 50 LSLEEACQIYTLTVEEFLSWQAS 72 (91) Q Consensus 50 is~~EA~~rY~LS~EEf~~W~~a 72 (91) .|++|||+.|++..|+|..=..+ T Consensus 41 etleeaa~~hgiD~d~Ll~eLN~ 63 (73) T 2k5e_A 41 ESLEQGANAHGLNVEDILRDLNA 63 (73) T ss_dssp SBHHHHHHHTTCCHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHH T ss_conf 67999999949799999999999 No 8 >2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens} Probab=36.29 E-value=22 Score=17.17 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=24.8 Q ss_pred HHHHHHHCCCCHHHHH-HHHHHHHHHCHHHHHHHHHH Q ss_conf 9999977067999999-99999998399868875777 Q gi|254780895|r 52 LEEACQIYTLTVEEFL-SWQASIVQHGLAGLRTTQIQ 87 (91) Q Consensus 52 ~~EA~~rY~LS~EEf~-~W~~av~~hG~~gLr~T~lQ 87 (91) .-|-|.+|+|+.+||. +|.+--..|+-..+-...|- T Consensus 50 c~ELC~~y~lda~e~VeeWmAFs~S~~g~~~T~enL~ 86 (101) T 2keb_A 50 LVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILN 86 (101) T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 9999998399889999999999853799998889999 No 9 >2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon} Probab=33.70 E-value=18 Score=17.67 Aligned_cols=19 Identities=42% Similarity=0.393 Sum_probs=15.3 Q ss_pred HHHHHHHHCCCCCHHHHHH Q ss_conf 9999998608869999997 Q gi|254780895|r 39 AEVVAAVKGGLLSLEEACQ 57 (91) Q Consensus 39 A~VV~aV~~GLis~~EA~~ 57 (91) --|-+|..+||||.+||-. T Consensus 80 DFV~KA~~~gLiTeedA~~ 98 (102) T 2job_A 80 DFVRKAFQKGLISQQEANQ 98 (102) T ss_dssp HHHHHHHHHTCSCHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHH T ss_conf 9999999848865999998 No 10 >2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1 Probab=33.25 E-value=31 Score=16.37 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH Q ss_conf 3677999999998608869999997706799999999999998399 Q gi|254780895|r 33 WVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSWQASIVQHGL 78 (91) Q Consensus 33 WVasRKA~VV~aV~~GLis~~EA~~rY~LS~EEf~~W~~av~~hG~ 78 (91) |-.--.-|.-.|+..|+||.++|-.-+.-. ..=+..|.+||- T Consensus 117 ~~llD~DEL~~A~~~GlIs~e~ae~Al~~a----~~avegIa~~g~ 158 (176) T 2p12_A 117 TELLDVDELMEAHTTGLLDTATAEQAILTA----TTAIDGIAAHGH 158 (176) T ss_dssp EEEECHHHHHHHHHTTSSCHHHHHHHHHHH----HHHHHHHHHTTT T ss_pred EEEECHHHHHHHHHCCCCCHHHHHHHHHHH----HHHHHHHHHCCC T ss_conf 599659999999986998999999999999----999999998479 No 11 >3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.12A {Bacteroides fragilis nctc 9343} Probab=30.22 E-value=34 Score=16.09 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=23.9 Q ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCHHHH Q ss_conf 99999998608869999997706799999 Q gi|254780895|r 38 KAEVVAAVKGGLLSLEEACQIYTLTVEEF 66 (91) Q Consensus 38 KA~VV~aV~~GLis~~EA~~rY~LS~EEf 66 (91) =.+.|.|+..|.|+.+||++|-.-+..-+ T Consensus 71 L~a~~vA~e~G~I~~~ea~~R~~~tL~tl 99 (430) T 3eu8_A 71 IMAILAGIDRGYVSREEGLRRMEKIVGFL 99 (430) T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999828867999999999999999 No 12 >1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1 Probab=29.71 E-value=10 Score=19.18 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.8 Q ss_pred CCCCCCCCEEECCCCCCCCH Q ss_conf 42032322677799983353 Q gi|254780895|r 3 EKIQSHMKYVIGPDGSPLTI 22 (91) Q Consensus 3 e~~~~~~~~V~gPdGs~lt~ 22 (91) +.-+|.+..++.|.||++|+ T Consensus 26 ~~enP~v~~~vl~~gs~VT~ 45 (45) T 1hym_A 26 ERQNPNVKAVILEEGTPVTK 45 (45) T ss_dssp HHHCTTCEEEEEECCSCCCC T ss_pred HHHCCCCEEEEECCCCCCCC T ss_conf 97789963898118997779 No 13 >1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A Probab=29.57 E-value=35 Score=16.00 Aligned_cols=48 Identities=15% Similarity=0.222 Sum_probs=39.6 Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCCHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 988503677999999998608-869999997706799999999999998 Q gi|254780895|r 28 PNTRRWVARRKAEVVAAVKGG-LLSLEEACQIYTLTVEEFLSWQASIVQ 75 (91) Q Consensus 28 ~~T~RWVasRKA~VV~aV~~G-Lis~~EA~~rY~LS~EEf~~W~~av~~ 75 (91) |--+.|...-|.+|+..+..| -++..++++.|+++..-...|..--+. T Consensus 3 ~kRk~~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~k~~ 51 (131) T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRA 51 (131) T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 7423189999999999999778888999999989199999999924799 No 14 >2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} Probab=27.01 E-value=18 Score=17.69 Aligned_cols=15 Identities=60% Similarity=0.862 Sum_probs=13.7 Q ss_pred CCCCCCCCHHHCCCC Q ss_conf 799983353217599 Q gi|254780895|r 14 GPDGSPLTIANLPPP 28 (91) Q Consensus 14 gPdGs~lt~aDLPp~ 28 (91) ||.|||-|.|.-||. T Consensus 1 gplgspntgakqpps 15 (26) T 2jmf_B 1 GPLGSPNTGAKQPPS 15 (26) T ss_pred CCCCCCCCCCCCCCC T ss_conf 988888878778988 No 15 >2bze_A KIAA0252 protein; human RTF1 PLUS3 domain, transcription, elongation, PAF1 complex, histone H3 methylation, H2B ubiquitination, CDC73, LEO1, CTR9; NMR {Homo sapiens} SCOP: b.34.21.1 PDB: 2db9_A Probab=21.89 E-value=49 Score=15.15 Aligned_cols=23 Identities=22% Similarity=0.579 Sum_probs=17.8 Q ss_pred HHCCCCHHHHHHHHHHHHHHCHH Q ss_conf 77067999999999999983998 Q gi|254780895|r 57 QIYTLTVEEFLSWQASIVQHGLA 79 (91) Q Consensus 57 ~rY~LS~EEf~~W~~av~~hG~~ 79 (91) .-=..+++||..|...+...|.. T Consensus 112 SN~~fte~E~~~w~~~~~~~~~~ 134 (153) T 2bze_A 112 SNQEFTESEFMKWKEAMFSAGMQ 134 (153) T ss_dssp CCSCCCHHHHHHHHHHHHHHTCC T ss_pred ECCCCCHHHHHHHHHHHHHCCCC T ss_conf 19999999999999999976999 No 16 >3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} PDB: 3hds_A* 3hfk_A* 2ifx_A* Probab=21.12 E-value=16 Score=18.06 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=20.1 Q ss_pred HHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHC Q ss_conf 7706799999999999998399868875777633 Q gi|254780895|r 57 QIYTLTVEEFLSWQASIVQHGLAGLRTTQIQKYR 90 (91) Q Consensus 57 ~rY~LS~EEf~~W~~av~~hG~~gLr~T~lQ~YR 90 (91) ++=+||.|||..|-. .|+.-+.+.--+.+|. T Consensus 19 Rk~gls~eeF~~yw~---~Hapl~~~~pgl~~y~ 49 (116) T 3hf5_A 19 KPESMSHEQFRKECV---VHFQMSAGMPGLHKYE 49 (116) T ss_dssp CCTTSCHHHHHHHHH---HHHHHTTTCTTCSEEE T ss_pred CCCCCCHHHHHHHHH---HHHHHHHHCCCCCCEE T ss_conf 499989999999999---9999986486733089 No 17 >3ctw_B RCDA; protein binding; 2.90A {Caulobacter crescentus} Probab=20.82 E-value=11 Score=18.84 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=23.7 Q ss_pred HHHHHHCCCCCHHHHH-HHCCCCHHHHHHH Q ss_conf 9999860886999999-7706799999999 Q gi|254780895|r 41 VVAAVKGGLLSLEEAC-QIYTLTVEEFLSW 69 (91) Q Consensus 41 VV~aV~~GLis~~EA~-~rY~LS~EEf~~W 69 (91) +-+||+-|=||.++|| +.|.|+.++-.++ T Consensus 83 lqRAv~eGEMt~eqa~~ek~rl~~~~~~~~ 112 (169) T 3ctw_B 83 VQRAVREGEMPPEAACAEAYRLAEEAPADG 112 (169) T ss_dssp HHHHHHTTSSCTTTTSSSCC---------- T ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCC T ss_conf 999998489898988545224688899985 No 18 >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Probab=20.59 E-value=53 Score=14.99 Aligned_cols=49 Identities=24% Similarity=0.166 Sum_probs=41.4 Q ss_pred HHHHHHHCCCCCHHHHHHHC---CCCHHHHHHHHHHHHHHCHHHHHHHHHHH Q ss_conf 99999860886999999770---67999999999999983998688757776 Q gi|254780895|r 40 EVVAAVKGGLLSLEEACQIY---TLTVEEFLSWQASIVQHGLAGLRTTQIQK 88 (91) Q Consensus 40 ~VV~aV~~GLis~~EA~~rY---~LS~EEf~~W~~av~~hG~~gLr~T~lQ~ 88 (91) -..+|-.+++-.+.++|+.| .|+.+-........++|+...|+-..++- T Consensus 248 ll~~A~~~~i~~L~~~c~~~L~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~f 299 (312) T 3hqi_A 248 LLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDF 299 (312) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 9999988593899999999998639999999999999983909999999999 Done!