RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780895|ref|YP_003065308.1| hypothetical protein
CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
(91 letters)
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Silicibacter pomeroyi} (A:)
Length = 101
Score = 136 bits (345), Expect = 7e-34
Identities = 42/82 (51%), Positives = 56/82 (68%)
Query: 10 KYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69
+ V PDGS +T A+LPP NTRRWVA RK VV V GL++L EA Q Y L+ EEF SW
Sbjct: 11 RSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSW 70
Query: 70 QASIVQHGLAGLRTTQIQKYRE 91
+++ +HG L+ T ++KYR+
Sbjct: 71 VSALAEHGKDALKVTALKKYRQ 92
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI,
target RHR5, structural genomics, protein structure
initiative; NMR {Rhodobacter sphaeroides} (A:)
Length = 95
Score = 136 bits (345), Expect = 8e-34
Identities = 41/82 (50%), Positives = 56/82 (68%)
Query: 10 KYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69
+ V PDG+ L+ A+LPP +TRRWVA RKA VV AV GL++ EA Y+L+ EEF W
Sbjct: 10 RQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALW 69
Query: 70 QASIVQHGLAGLRTTQIQKYRE 91
++++ HG L+ T IQKYR+
Sbjct: 70 RSAVAAHGEKALKVTMIQKYRQ 91
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2,
protein structure initiative; NMR {Clostridium
thermocellum atcc 27405} (A:)
Length = 76
Score = 26.6 bits (59), Expect = 1.1
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 28 PNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLS 68
T + S+E+AC ++ + ++ +
Sbjct: 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVK 57
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural
genomics consortium, transferase; 2.41A {Plasmodium
vivax} (A:184-458)
Length = 275
Score = 26.5 bits (57), Expect = 1.5
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 16 DGSPLTIANLPPPNTRRWVARRKAE 40
DG L+ ++ P ++ +A+
Sbjct: 1 DGYALSREDIKNPKFQKLIAKNLKL 25
>2k5e_A Uncharacterized protein; helix protein, structural
genomic, structural genomics, PSI-2, protein structure
initiative; NMR {Methanococcus jannaschii} (A:)
Length = 73
Score = 26.2 bits (58), Expect = 1.7
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 28 PNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLS 68
P + + + SLE+ + L VE+ L
Sbjct: 19 PGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILR 59
>1cjy_A CPLA2, protein (cytosolic phospholipase A2);
lipid-binding, hydrolase; HET: MES; 2.50A {Homo
sapiens} (A:142-749)
Length = 608
Score = 25.2 bits (53), Expect = 3.6
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 22 IANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEA 55
+ + + +RK + ++K LL + +
Sbjct: 5 FSMALCDQEKTFRQQRKEHIRESMK-KLLGPKNS 37
>2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA
binding protein; 3.49A {Rabies virus} (A:227-450)
Length = 224
Score = 24.8 bits (54), Expect = 3.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 48 GLLSLEEACQIYTLTVEEFLSW 69
GL+S + LT E + +
Sbjct: 12 GLVSFTGFIKQINLTAREAILY 33
>3hhw_K Nucleoprotein; protein complex, template, replication,
negative strand RNA virus, chaperone, cytoplasm,
phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis
indiana virus} PDB: 2qvj_A* 3hhz_K 2gic_A (K:215-421)
Length = 207
Score = 24.8 bits (54), Expect = 4.1
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 48 GLLSLEEACQIYTLTVEEFLSW 69
L + C+I ++ E+ +W
Sbjct: 12 ALATFGHLCKITGMSTEDVTTW 33
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase,
structural genomics, structural genomics consortium,
SGC; 1.80A {Toxoplasma gondii} (A:1-43,A:187-413)
Length = 270
Score = 24.4 bits (52), Expect = 5.4
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 15 PDGSPLTIANLPPPNTRRWVARRKAEVVAAV 45
DG P PP T + AE V A+
Sbjct: 240 TDGEPTREGGAPPSGTSQPDEAGAAEAVTAI 270
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase;
transferase, structural genomics, NPPSFA; 2.10A {Thermus
thermophilus HB8} (A:1-123,A:194-305)
Length = 235
Score = 24.3 bits (52), Expect = 5.8
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 33 WVARRKAEVVAAVKGGLLSLEEACQI 58
E A V G L LE+A ++
Sbjct: 85 AAGHSLGEWTAHVAAGTLELEDALRL 110
>3b59_A Glyoxalase/bleomycin resistance protein/dioxygenase; 11004Z,
NYSGXRC, PSI-2, structural genomics; 2.53A
{Novosphingobium aromaticivorans DSM12444} (A:1-134)
Length = 134
Score = 24.4 bits (52), Expect = 6.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 11 YVIGPDGSPLTIANLPPPNTRRWVAR 36
PDG +++ +R +AR
Sbjct: 109 RFFSPDGLLFEVSSDVAKGAKRDLAR 134
>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric
protein, complex (isomerase/peptide), transition state
analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} (A:)
Length = 256
Score = 24.3 bits (53), Expect = 6.6
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 2 TEKIQSHMKYVIGPDGSPLTIANLPPP 28
E S ++ PD +P +
Sbjct: 67 LEIAHSRIRRFESPDETPFFPDKIQKS 93
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B} (A:1-132,A:207-318)
Length = 244
Score = 24.3 bits (52), Expect = 6.7
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 33 WVARRKAEVVAAVKGGLLSLEEACQI 58
E A V G ++ +A +
Sbjct: 94 VAGHSLGEYTALVAAGAIAFRDALPL 119
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5; 2.73A {Saccharopolyspora
erythraea} (A:550-674,A:746-852)
Length = 232
Score = 23.9 bits (51), Expect = 7.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 33 WVARRKAEVVAAVKGGLLSLEEACQI 58
V + E+ AA G L+LE+A ++
Sbjct: 89 VVGHSQGEIAAAHVAGALTLEDAAKL 114
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid
biosynthesis, malonyl/palmitoyl transferase,
phosphopantetheine, transferase; HET: GVL FMN; 3.10A
{Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
(G:135-313,G:492-559)
Length = 247
Score = 23.9 bits (51), Expect = 8.5
Identities = 4/19 (21%), Positives = 4/19 (21%)
Query: 40 EVVAAVKGGLLSLEEACQI 58
V A S E
Sbjct: 139 LVTAVAIAETDSWESFFVS 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (B:144-317,B:429-553)
Length = 299
Score = 23.9 bits (51), Expect = 8.9
Identities = 4/20 (20%), Positives = 4/20 (20%)
Query: 39 AEVVAAVKGGLLSLEEACQI 58
V A S E
Sbjct: 133 GLVTAVAIAETDSWESFFVS 152
>2fi0_A Conserved domain protein; structural
genomics,streptococcus pneumoniae, PSI, protein
structure initiative; 2.10A {Streptococcus pneumoniae
TIGR4} (A:)
Length = 81
Score = 23.5 bits (51), Expect = 9.4
Identities = 7/70 (10%), Positives = 25/70 (35%), Gaps = 10/70 (14%)
Query: 5 IQSHMKYVIGPDGSPLTIANLPP--PNTRRWVARR-----KAEVVAAVKGGLLSLEEACQ 57
++ M +I + +A + P + ++ G +SL++ +
Sbjct: 1 MEVVMDNIIDVS---IPVAEVVDKHPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSK 57
Query: 58 IYTLTVEEFL 67
+ +++ +
Sbjct: 58 LAGTPMDKIV 67
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase;
malonyl-COA:ACP transacylase, , nucleophilic attack;
2.30A {Mycobacterium tuberculosis H37RV} PDB: 2qj3_A
(A:1-128,A:196-303)
Length = 236
Score = 23.8 bits (51), Expect = 9.6
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 33 WVARRKAEVVAAVKGGLLSLEEACQI 58
E+ A G+++ ++A +
Sbjct: 88 VAGHSVGEIAAYAIAGVIAADDAVAL 113
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 717,208
Number of extensions: 28302
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 24
Length of query: 91
Length of database: 4,956,049
Length adjustment: 52
Effective length of query: 39
Effective length of database: 3,198,189
Effective search space: 124729371
Effective search space used: 124729371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)