RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780895|ref|YP_003065308.1| hypothetical protein
CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure
          initiative, northeast structural genomics consortium,
          NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
          Length = 101

 Score =  129 bits (326), Expect = 2e-31
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query: 10 KYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69
          + V  PDGS +T A+LPP NTRRWVA RK  VV  V  GL++L EA Q Y L+ EEF SW
Sbjct: 11 RSVTLPDGSIMTRADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSW 70

Query: 70 QASIVQHGLAGLRTTQIQKYRE 91
           +++ +HG   L+ T ++KYR+
Sbjct: 71 VSALAEHGKDALKVTALKKYRQ 92


>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target
          RHR5, structural genomics, protein structure
          initiative; NMR {Rhodobacter sphaeroides}
          Length = 95

 Score =  128 bits (323), Expect = 4e-31
 Identities = 41/82 (50%), Positives = 56/82 (68%)

Query: 10 KYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69
          + V  PDG+ L+ A+LPP +TRRWVA RKA VV AV  GL++  EA   Y+L+ EEF  W
Sbjct: 10 RQVTLPDGTVLSRADLPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALW 69

Query: 70 QASIVQHGLAGLRTTQIQKYRE 91
          ++++  HG   L+ T IQKYR+
Sbjct: 70 RSAVAAHGEKALKVTMIQKYRQ 91


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.3 bits (72), Expect = 0.030
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 3  EKIQSHMK-YVIGPDGSP-LTI-ANL 25
          +K+Q+ +K Y    D +P L I A +
Sbjct: 23 KKLQASLKLY--ADDSAPALAIKATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.3 bits (68), Expect = 0.099
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 17  GSPLTIANLPPPNTRRWVARRKAEVVAAVKGG-------LLSLEEACQIYTLTVEEFLSW 69
             P            R V    A++VA + GG          L +  Q Y + V + + +
Sbjct: 134 KRPFD--KKSNSALFRAVGEGNAQLVA-IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190

Query: 70  QASIVQHGLAGLRTTQ-IQKYR 90
            A  +   L   RTT   +K  
Sbjct: 191 SAETLSE-LI--RTTLDAEKVF 209



 Score = 27.2 bits (60), Expect = 0.95
 Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 42/83 (50%)

Query: 41  VVAAVKGGLL-------SLEEACQIYTLTVEEFLSW------QA--------SIVQ---- 75
           V A      +       S   +           L +      +A        SI++    
Sbjct: 278 VTAVA----IAETDSWESFFVS----VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329

Query: 76  HG---------LAGLRTTQIQKY 89
           +          ++ L   Q+Q Y
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDY 352


>2gtt_A Nucleoprotein; protein-RNA complex, viral protein, RNA binding
           protein; 3.49A {Rabies virus} SCOP: a.260.1.1
          Length = 450

 Score = 27.2 bits (60), Expect = 0.98
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 47  GGLLSLEEACQIYTLTVEEFLSW 69
            GL+S     +   LT  E + +
Sbjct: 237 SGLVSFTGFIKQINLTAREAILY 259


>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
           reductase, ketoacyl synthase, ketoacyl reductase; HET:
           FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
          Length = 2060

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 21  TIANLPPPNTRRWVARRKAEVVAAVKG-------GLLSLEEACQIYTLTVEEFL 67
            I +L        + +R+  ++  +         G  S  E   +  +T  E +
Sbjct: 864 KIFSLDRSKRVAELKKRRDYIIKKLNDDFQKVWFGRNSAGEPVDLEDMTYAEVV 917


>3hhw_K Nucleoprotein; protein complex, template, replication, negative
           strand RNA virus, chaperone, cytoplasm, phosphoprotein;
           HET: TAR; 2.70A {Vesicular stomatitis indiana virus}
           PDB: 2qvj_A* 3hhz_K 2gic_A
          Length = 421

 Score = 26.3 bits (58), Expect = 1.5
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 48  GLLSLEEACQIYTLTVEEFLSW 69
            L +    C+I  ++ E+  +W
Sbjct: 226 ALATFGHLCKITGMSTEDVTTW 247


>2j3w_A Sedlin, trafficking protein particle complex protein 2;
          multisubunit tethering factor, trapp, palmitate,
          transport, lipoprotein; HET: P1L; 2.1A {Mus musculus}
          SCOP: d.110.4.3 PDB: 1h3q_A
          Length = 142

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 4/25 (16%), Positives = 8/25 (32%)

Query: 12 VIGPDGSPLTIANLPPPNTRRWVAR 36
          ++G   +P+      PP        
Sbjct: 11 IVGHHDNPVFEMEFLPPGKAESKDD 35


>2wpx_A ORF14; transferase, acetyl transferase, antibiotic biosynthesis;
          HET: ACO; 2.31A {Streptomyces clavuligerus} PDB:
          2wpw_A*
          Length = 339

 Score = 25.8 bits (55), Expect = 2.3
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 14 GPDGSPLTIANL--------PPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTV 63
          GP  +P    ++        P      WV R    VV A++  L       ++  L V
Sbjct: 35 GPRAAPPCNVDMVGSLRFAPPATALDDWVVRSGGRVVGALRLALPDGAPTARVDQLLV 92


>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
           genomics, unknown function; 2.20A {Thermus thermophilus
           HB8}
          Length = 286

 Score = 25.2 bits (53), Expect = 4.0
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 25  LPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLS 68
              P      +R +A +    + G     +A + +    +E L+
Sbjct: 231 TSYPYAEEVASRLRAPIRVLPEAGHYLWIDAPEAFEEAFKEALA 274


>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein
          structure initiative; NMR {Clostridium thermocellum
          atcc 27405}
          Length = 76

 Score = 24.7 bits (54), Expect = 4.8
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 28 PNTRRWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFL 67
            T           +        S+E+AC ++ +  ++ +
Sbjct: 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLV 56


>3kuj_A Polyadenylate-binding protein 1; protein-protein complex,
          acetylation, alternative splicing, cytoplasm,
          methylation, mRNA processing, mRNA splicing; 1.40A
          {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A
          2rqg_B 2rqh_B 3kur_A 2x04_A
          Length = 88

 Score = 24.8 bits (54), Expect = 5.5
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 14 GPDGSPLT---IANLPPPNTRRW--------VARRKAEVVAAVKGGLLSLEEACQIYTLT 62
          GP GSPLT   +A+ PP   ++         +      +   + G LL ++ +  ++ L 
Sbjct: 1  GPLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60

Query: 63 VEEFL 67
            E L
Sbjct: 61 SPESL 65


>3kus_A Polyadenylate-binding protein 1; protein-protein complex,
          acetylation, alternative splicing, cytoplasm,
          methylation, mRNA processing, mRNA splicing, nucleus;
          HET: EPE; 1.40A {Homo sapiens} PDB: 3kut_A 3kur_A
          2x04_A
          Length = 88

 Score = 24.7 bits (54), Expect = 5.8
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 14 GPDGSPLT---IANLPPPNTRRW--------VARRKAEVVAAVKGGLLSLEEACQIYTLT 62
          GP GSPLT   +A+ PP   ++         +      +   + G LL ++ +  ++ L 
Sbjct: 1  GPLGSPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLE 60

Query: 63 VEEFL 67
            E L
Sbjct: 61 SPESL 65


>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
           acid synthesis, malonyl-COA: acyl carrier protein TRAN
           (MCAT), FABD; 1.46A {Staphylococcus aureus}
          Length = 316

 Score = 23.8 bits (51), Expect = 9.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 40  EVVAAVKGGLLSLEEACQI 58
           E  + V   +LS E+A +I
Sbjct: 100 EYSSLVAADVLSFEDAVKI 118


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 797,776
Number of extensions: 31596
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 21
Length of query: 91
Length of database: 5,693,230
Length adjustment: 58
Effective length of query: 33
Effective length of database: 4,287,078
Effective search space: 141473574
Effective search space used: 141473574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)