BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780895|ref|YP_003065308.1| hypothetical protein
CLIBASIA_03960 [Candidatus Liberibacter asiaticus str. psy62]
(91 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780895|ref|YP_003065308.1| hypothetical protein CLIBASIA_03960 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 91
Score = 189 bits (480), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYT 60
MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYT
Sbjct: 1 MTEKIQSHMKYVIGPDGSPLTIANLPPPNTRRWVARRKAEVVAAVKGGLLSLEEACQIYT 60
Query: 61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYRE 91
LTVEEFLSWQASIVQHGLAGLRTTQIQKYRE
Sbjct: 61 LTVEEFLSWQASIVQHGLAGLRTTQIQKYRE 91
>gi|254781217|ref|YP_003065630.1| hypothetical protein CLIBASIA_05620 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 27.3 bits (59), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 32 RWVARRKAEVVAAVKGGLLSLEEACQIYTLTVEEFLSW 69
++ R ++A+ GGL SL ++C+ + +TV F W
Sbjct: 5 KYTKERIDNILASFSGGL-SLSQSCKKHGVTVVSFHGW 41
>gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 311
Score = 21.6 bits (44), Expect = 2.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 20 LTIANLPPPNTRRWVARRKAEVVAAVKGGLL 50
L A P NT + +KAE +AAV GLL
Sbjct: 60 LKYAYRPADNTHPF-GHQKAEYIAAVVEGLL 89
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 20.8 bits (42), Expect = 4.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 33 WVARR------KAEVVAAVKGGLLSLEEACQIYTLTV 63
W+ R+ K E V +K LSL E C +Y + V
Sbjct: 426 WLYRKVVFGVSKCEKVQQLKD--LSLRERCMVYPIAV 460
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 20.4 bits (41), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 44 AVKGGLLSLEEACQIYTLTVEEF 66
AV+GG+L + E + Y + ++ F
Sbjct: 168 AVRGGILDVYEPTKKYPVRLDFF 190
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,347
Number of Sequences: 1233
Number of extensions: 1627
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 328,796
effective HSP length: 59
effective length of query: 32
effective length of database: 256,049
effective search space: 8193568
effective search space used: 8193568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)