HHsearch alignment for GI: 254780896 and conserved domain: COG0559
>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].
Probab=100.00 E-value=1.4e-45 Score=296.16 Aligned_cols=279 Identities=24% Similarity=0.299 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999998432248999999999999999720456----5303653357889889876544445
Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYG----LSIWLLIPVSAMISGACGMIMGLPS 114 (351)
Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g----~~~~~ai~~a~~~~a~~g~l~g~~~ 114 (351)
T Consensus 10 l~nGL~~GsiyaL~AlGltlvygv~rviNfAHG~~~m~Gay~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~er~v 89 (297)
T COG0559 10 LVNGLSLGSIYALLALGLTLVYGVLRVINFAHGEFFMLGAYAAYLAVALLGPLGALGLLLALPLAFAITALIGLLIERLV 89 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999981641133999999999999999973233223799999999999999999999999
Q ss_pred HHH-H--H-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 432-1--3-45777799988989999985554058767885776521121234764343433331001489999999999
Q gi|254780896|r 115 LKF-R--G-DYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGM 190 (351)
Q Consensus 115 ~rl-~--g-~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (351)
T Consensus 90 ~rpl~~~~~l~~liat~G~~l~l~~~~~~~----~g~~~~~~p~--~~~~~-----~~----~~g~~~~~~~~l~~~~~s 154 (297)
T COG0559 90 LRPLRGRPALALLIATLGVSLILQGLARLI----FGPRPVGLPP--ALSGS-----VR----FLGGVTLPTYRLFIIAVS 154 (297)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHE----ECCCCCCCCH--HHCCC-----CC----CCCCCCCHHHHHHHHHHH
T ss_conf 999732884699999999999999999993----5876666771--42144-----21----032001069999999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHH
Q ss_conf 99999999996130599999996421222334202322367999998799999999999866440113543158999988
Q gi|254780896|r 191 CFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVI 270 (351)
Q Consensus 191 ~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~ 270 (351)
T Consensus 155 ~~~~~~l~~~l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf~lg~~lAglaGvl~~~~~-~v~p~~-G~~~~l~~F 232 (297)
T COG0559 155 LALLLGLWLLLRRTRLGRALRAVAENRKMAALLGINVERVIALTFALGGALAGLAGVLLAPIY-TVSPYM-GFLYGLKAF 232 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCH-HHHHHHHHH
T ss_conf 999999999999837718898760489899880986899999999999999999999999873-679522-179999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9887347422389999999999999999873122100001234442025899999999999998589965667402
Q gi|254780896|r 271 SIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPS 346 (351)
Q Consensus 271 ~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~ 346 (351)
T Consensus 233 ~~~VlGGlgSi~GA~~gglliG~~e~~~~~------------~~~~~~~~~~v~f~lli~vLl~rP~GL~g~~~~~ 296 (297)
T COG0559 233 AAVVLGGLGSIPGAVLGGLLLGLAESLVSA------------KYFGSEYKDVVAFLLLILVLLVRPQGLFGRKERE 296 (297)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 986426756378999999999999998602------------3326679999999999999997477555755223