HHsearch alignment for GI: 254780896 and conserved domain: COG1079

>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only].
Probab=99.95  E-value=5.3e-26  Score=175.68  Aligned_cols=276  Identities=17%  Similarity=0.176  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999984322489999999999999997204565303653357889889876544445432134
Q gi|254780896|r   41 SMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGD  120 (351)
Q Consensus        41 ~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~  120 (351)
T Consensus        13 ~~l~~atPLllaaLG~-l~sERsGVlNIglEG~M~~gAf~~~~~~~~-t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~n   90 (304)
T COG1079          13 SILRAATPLLLAALGG-LFSERSGVLNIGLEGIMLLGAFSGALFAYG-TGSPWLGLLAAALVGALFGLLHAFLTIKLRAN   90 (304)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHCEEEECHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999988-898872214541314899999999999981-46689999999999999999999999761456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57777999889899999855540587678857765211212347643434333310014899999999999999999999
Q gi|254780896|r  121 YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILW  200 (351)
Q Consensus       121 ~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (351)
T Consensus        91 qi-isG~alnl~a~Glt~fl~~~~~~~~~~~-~~~~~~p~l---~~ip~~g-~~~-----~~~~~~~y~ai~lv~~~~~~  159 (304)
T COG1079          91 QI-ISGLALNLLASGLTAFLGQSIFGQPGTT-FQPIDIPGL---SDIPVIG-PAL-----FGQSPLVYLAILLVALVWYV  159 (304)
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCC---CCCCCCC-CHH-----CCCCHHHHHHHHHHHHHHHH
T ss_conf             12-2489999999899999999986368887-776677632---3476444-110-----25579999999999999999


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             61305999999964212223342023223679999987999999999998664401135431589999889887347422
Q gi|254780896|r  201 LRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTS  280 (351)
Q Consensus       201 l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs  280 (351)
T Consensus       160 L~rTr~GL~lravGE~P~aad~~Gi~V~r~R~~av~~sG~laGlaGa~Lsl~~~~~f~~~m~aGrGfIAlA~~ifa~-W~  238 (304)
T COG1079         160 LYRTRFGLRLRAVGENPAAADAMGINVYRYRYLAVLVSGALAGLAGAYLSLAYSGQFVEGMTAGRGFIALAAVIFAR-WR  238 (304)
T ss_pred             HHCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHC-CC
T ss_conf             73052466999826982678867987567889999999999875352135550456444666772199999999947-87


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             38999999999999999987312210000123444202589999999999999858
Q gi|254780896|r  281 LSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS  336 (351)
Q Consensus       281 ~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP  336 (351)
T Consensus       239 Pl~~~~~allFg~~~~l~~~~q~------~~~~vp~~ll~~iPYi~tiivL~~~~~  288 (304)
T COG1079         239 PLGALVAALLFGFFEALAIQLQA------LGILVPSQLLQALPYIATLIVLALFSG  288 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             39999999999999999988612------466773899999869999999999844