HHsearch alignment for GI: 254780896 and conserved domain: COG1079
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only].
Probab=99.95 E-value=5.3e-26 Score=175.68 Aligned_cols=276 Identities=17% Similarity=0.176 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999984322489999999999999997204565303653357889889876544445432134
Q gi|254780896|r 41 SMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGD 120 (351)
Q Consensus 41 ~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~g~ 120 (351)
T Consensus 13 ~~l~~atPLllaaLG~-l~sERsGVlNIglEG~M~~gAf~~~~~~~~-t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~n 90 (304)
T COG1079 13 SILRAATPLLLAALGG-LFSERSGVLNIGLEGIMLLGAFSGALFAYG-TGSPWLGLLAAALVGALFGLLHAFLTIKLRAN 90 (304)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHCEEEECHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999988-898872214541314899999999999981-46689999999999999999999999761456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57777999889899999855540587678857765211212347643434333310014899999999999999999999
Q gi|254780896|r 121 YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILW 200 (351)
Q Consensus 121 ~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (351)
T Consensus 91 qi-isG~alnl~a~Glt~fl~~~~~~~~~~~-~~~~~~p~l---~~ip~~g-~~~-----~~~~~~~y~ai~lv~~~~~~ 159 (304)
T COG1079 91 QI-ISGLALNLLASGLTAFLGQSIFGQPGTT-FQPIDIPGL---SDIPVIG-PAL-----FGQSPLVYLAILLVALVWYV 159 (304)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCC---CCCCCCC-CHH-----CCCCHHHHHHHHHHHHHHHH
T ss_conf 12-2489999999899999999986368887-776677632---3476444-110-----25579999999999999999
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 61305999999964212223342023223679999987999999999998664401135431589999889887347422
Q gi|254780896|r 201 LRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTS 280 (351)
Q Consensus 201 l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs 280 (351)
T Consensus 160 L~rTr~GL~lravGE~P~aad~~Gi~V~r~R~~av~~sG~laGlaGa~Lsl~~~~~f~~~m~aGrGfIAlA~~ifa~-W~ 238 (304)
T COG1079 160 LYRTRFGLRLRAVGENPAAADAMGINVYRYRYLAVLVSGALAGLAGAYLSLAYSGQFVEGMTAGRGFIALAAVIFAR-WR 238 (304)
T ss_pred HHCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHC-CC
T ss_conf 73052466999826982678867987567889999999999875352135550456444666772199999999947-87
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 38999999999999999987312210000123444202589999999999999858
Q gi|254780896|r 281 LSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351)
Q Consensus 281 ~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351)
T Consensus 239 Pl~~~~~allFg~~~~l~~~~q~------~~~~vp~~ll~~iPYi~tiivL~~~~~ 288 (304)
T COG1079 239 PLGALVAALLFGFFEALAIQLQA------LGILVPSQLLQALPYIATLIVLALFSG 288 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 39999999999999999988612------466773899999869999999999844