HHsearch alignment for GI: 254780896 and conserved domain: COG1172
>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].
Probab=100.00 E-value=3.4e-36 Score=237.67 Aligned_cols=268 Identities=20% Similarity=0.188 Sum_probs=213.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 301472379999999999999999999999984322489999999999999997204-5653036533578898898765
Q gi|254780896|r 31 GATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSR-YGLSIWLLIPVSAMISGACGMI 109 (351)
Q Consensus 31 ~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~-~g~~~~~ai~~a~~~~a~~g~l 109 (351)
T Consensus 30 p~Fls~~nl~~il~~~~~lgilA~g~t~vi-itGgIDLSvGsv~al~~~~~a~~~~~~~~~~~~~a~~~~l~~g~~~G~i 108 (316)
T COG1172 30 PGFLSLSNLLNILRQAAILGILALGMTFVI-ITGGIDLSVGSVVALAAVVAASLLAAGGGLPILLALLAALAVGALIGLI 108 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 540489999999999999999999999999-9578556199999999999999998463334899999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 44445432134577779998898999998555405876788577652112123476434343333100148999999999
Q gi|254780896|r 110 MGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLG 189 (351)
Q Consensus 110 ~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (351)
T Consensus 109 NG~lv~~~~ip~f-I~TLgt~~i~rGl~l~~---t~G~~-i~--~-~~~~~~~g~~--~~~G-----------iP~~~~i 167 (316)
T COG1172 109 NGLLVARLRIPPF-IATLGTMFILRGLALLL---TGGRP-IS--L-PDAFAWLGSG--RILG-----------IPVPVII 167 (316)
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHHHH---CCCCC-CC--C-CHHHHHHCCC--CEEC-----------CCHHHHH
T ss_conf 9899998178829-99888999999999887---09926-77--9-7899984358--5428-----------7099999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHH
Q ss_conf 99999999999613059999999642122233420232236799999879999999999986644011354315899998
Q gi|254780896|r 190 MCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIV 269 (351)
Q Consensus 190 ~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~ 269 (351)
T Consensus 168 ~i~~~~~~~~~l~rT~~Gr~iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAaiaGi~~~~~~~s~~~~~-g~~~eL~a 246 (316)
T COG1172 168 FIVVAALFWLLLRRTRFGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALAGILLAARLGSAQPNA-GVGYELDA 246 (316)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHH
T ss_conf 99999999999845601478989789899999849881224424689999999999999999965848564-54548888
Q ss_pred HHHHHHCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89887347------42238999999999999999987312210000123444202589999999999999
Q gi|254780896|r 270 ISIVILGG------MTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVIL 333 (351)
Q Consensus 270 ~~~vvlGG------~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll 333 (351)
T Consensus 247 IAAvViGGtsL~GG~Gsv~Gt~iGalil~~l~ngl~l~~------------v~~~~q~~i~G~iil~av~ 304 (316)
T COG1172 247 IAAVVIGGTSLAGGRGSVIGTLLGALILGVLQNGLNLLG------------VSSYWQQIIKGLIILLAVA 304 (316)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH
T ss_conf 897541774766884045999999999999998899929------------9889999999999999999