HHsearch alignment for GI: 254780896 and conserved domain: COG4120
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=99.88 E-value=1.7e-20 Score=142.20 Aligned_cols=222 Identities=21% Similarity=0.247 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999843224899999999999999972045653036533578898898765444454321
Q gi|254780896|r 39 IDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFR 118 (351)
Q Consensus 39 ~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~g~l~g~~~~rl~ 118 (351)
T Consensus 6 l~~aleqgLi~~~v~LGvyisFRiLnFPDLTvdGsfpLGaAv~a~li~-~G~nP~~at~~a~~AG~~aG~it~~l~~k~k 84 (293)
T COG4120 6 LIGALEQGLIFAFVALGVYISFRILNFPDLTVDGSFPLGAAVAATLIA-AGVNPFLATLVAMVAGAAAGMITGLLNVKFK 84 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999989999999978613554068875315751050999999998-1687799999999987898999999997222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34577779998898999998555405876788577652112123476434343333100148999999999999999999
Q gi|254780896|r 119 GDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASII 198 (351)
Q Consensus 119 g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (351)
T Consensus 85 I~~L-----LAgIL~M~alySVNL------rIMgrpNl~ll~~~ti~~----~l~~~~~~~~~~~pli~~vlvii~~~~v 149 (293)
T COG4120 85 ILTL-----LAGILTMIALYSVNL------RIMGRPNLPLLGEDTIFT----PLPFDGLLDYLLRPLILVVLVIIAKLLV 149 (293)
T ss_pred HHHH-----HHHHHHHHHHHHHHH------HHHCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8779-----999999999998889------985589965368986335----3554566225778799999999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9961305999999964212223342023223679999987999999999998664401135431589999889887347
Q gi|254780896|r 199 LWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG 277 (351)
Q Consensus 199 ~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG 277 (351)
T Consensus 150 ~~fl~t~~GlalrAtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsm-GiG~iVvGLAavIIGe 227 (293)
T COG4120 150 IRFLKTDLGLALRATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSM-GIGTIVVGLAAVIIGE 227 (293)
T ss_pred HHHHHCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC-CCCHHHHHHHHHHHHH
T ss_conf 99973453622101279877999839872568999899988899985668887436530025-7442454567999779