HHsearch alignment for GI: 254780896 and conserved domain: COG4177
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=376.68 Aligned_cols=285 Identities=32% Similarity=0.516 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37999999999999999999999998432248999999999999999720-456-5303653357889889876544445
Q gi|254780896|r 37 KYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGS-RYG-LSIWLLIPVSAMISGACGMIMGLPS 114 (351)
Q Consensus 37 ~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~-~~g-~~~~~ai~~a~~~~a~~g~l~g~~~ 114 (351)
T Consensus 26 ~~~~~l~~~~~i~~ilal~lnl~~G~aG~lslGha~F~glGAY~~a~l~~~~~g~~~~~~~l~~~~~~~al~g~l~g~p~ 105 (314)
T COG4177 26 PFYLNLLTLILIYAILALGLNLVVGYAGLLSLGHAAFFGLGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPA 105 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999999999999999999846006314779999989999999988875134289999999999999999998799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43213457777999889899999855540587678857765211212347643434333310014899999999999999
Q gi|254780896|r 115 LKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLS 194 (351)
Q Consensus 115 ~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (351)
T Consensus 106 lRl~g~ylaI~Tla~~~~~~~~~~~~~~~tgG~~Gl~~i~~~~l~g~~---------------~~~~~~y~~~l~~l~l~ 170 (314)
T COG4177 106 LRLRGDYLAIVTLAFGEIFRILLLNATELTGGENGLSGIPRPTLLGFP---------------SRARGLYYLALLLLLLT 170 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHCCCC---------------CCHHHHHHHHHHHHHHH
T ss_conf 998528999999999999999997166751998771268833230555---------------30299999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
Q ss_conf 99999961305999999964212223342023223679999987999999999998664401135431589999889887
Q gi|254780896|r 195 ASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVI 274 (351)
Q Consensus 195 ~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vv 274 (351)
T Consensus 171 ~~~~~~l~~S~~Gr~l~AiRedE~~a~alG~n~~~~Kl~aF~isa~~AGiAGaL~a~~~~~v~p~~f~~~~S~~~l~~vv 250 (314)
T COG4177 171 LLVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAFVISAAIAGIAGALYALYLGFVSPESFSFTLSIEVLAMVV 250 (314)
T ss_pred HHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCHHCCHHHHHHHHHHHH
T ss_conf 99999986497033686661578999985998899999999999999999999999981503800253999999999999
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 3474223899999999999999998731221000012344420258999999999999985899656674021
Q gi|254780896|r 275 LGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSN 347 (351)
Q Consensus 275 lGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~~ 347 (351)
T Consensus 251 lGG~Gt~~G~v~Ga~l~~~~~~~l~~~~~~-----------~~~~~~~v~G~llvlv~l~~P~Gl~g~~~~~~ 312 (314)
T COG4177 251 LGGAGTLFGALLGAVLVVLLKELLRGLLPR-----------PVEYRLLVFGLLLVLVVLFRPRGLIGERRRRA 312 (314)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
T ss_conf 847643188999999999999999762453-----------15899999999999999983776334034421