HHsearch alignment for GI: 254780896 and conserved domain: COG4177

>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=376.68  Aligned_cols=285  Identities=32%  Similarity=0.516  Sum_probs=261.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             37999999999999999999999998432248999999999999999720-456-5303653357889889876544445
Q gi|254780896|r   37 KYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGS-RYG-LSIWLLIPVSAMISGACGMIMGLPS  114 (351)
Q Consensus        37 ~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~-~~g-~~~~~ai~~a~~~~a~~g~l~g~~~  114 (351)
T Consensus        26 ~~~~~l~~~~~i~~ilal~lnl~~G~aG~lslGha~F~glGAY~~a~l~~~~~g~~~~~~~l~~~~~~~al~g~l~g~p~  105 (314)
T COG4177          26 PFYLNLLTLILIYAILALGLNLVVGYAGLLSLGHAAFFGLGAYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPA  105 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78999999999999999999999846006314779999989999999988875134289999999999999999998799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             43213457777999889899999855540587678857765211212347643434333310014899999999999999
Q gi|254780896|r  115 LKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLS  194 (351)
Q Consensus       115 ~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (351)
T Consensus       106 lRl~g~ylaI~Tla~~~~~~~~~~~~~~~tgG~~Gl~~i~~~~l~g~~---------------~~~~~~y~~~l~~l~l~  170 (314)
T COG4177         106 LRLRGDYLAIVTLAFGEIFRILLLNATELTGGENGLSGIPRPTLLGFP---------------SRARGLYYLALLLLLLT  170 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHCCCC---------------CCHHHHHHHHHHHHHHH
T ss_conf             998528999999999999999997166751998771268833230555---------------30299999999999999


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHH
Q ss_conf             99999961305999999964212223342023223679999987999999999998664401135431589999889887
Q gi|254780896|r  195 ASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVI  274 (351)
Q Consensus       195 ~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~~~~~vv  274 (351)
T Consensus       171 ~~~~~~l~~S~~Gr~l~AiRedE~~a~alG~n~~~~Kl~aF~isa~~AGiAGaL~a~~~~~v~p~~f~~~~S~~~l~~vv  250 (314)
T COG4177         171 LLVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAFVISAAIAGIAGALYALYLGFVSPESFSFTLSIEVLAMVV  250 (314)
T ss_pred             HHHHHHHHCCCCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCHHCCHHHHHHHHHHHH
T ss_conf             99999986497033686661578999985998899999999999999999999999981503800253999999999999


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             3474223899999999999999998731221000012344420258999999999999985899656674021
Q gi|254780896|r  275 LGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSN  347 (351)
Q Consensus       275 lGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~~~~  347 (351)
T Consensus       251 lGG~Gt~~G~v~Ga~l~~~~~~~l~~~~~~-----------~~~~~~~v~G~llvlv~l~~P~Gl~g~~~~~~  312 (314)
T COG4177         251 LGGAGTLFGALLGAVLVVLLKELLRGLLPR-----------PVEYRLLVFGLLLVLVVLFRPRGLIGERRRRA  312 (314)
T ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC
T ss_conf             847643188999999999999999762453-----------15899999999999999983776334034421