HHsearch alignment for GI: 254780896 and conserved domain: PRK11301
>PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional.
Probab=100.00 E-value=0 Score=450.25 Aligned_cols=312 Identities=33% Similarity=0.558 Sum_probs=285.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99997530147237999999999999999999999998432248999999999999999720456530365335788988
Q gi|254780896|r 25 LLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISG 104 (351)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a 104 (351)
T Consensus 96 ~~~~~~~p~~~~~~~~~ia~~~lIY~ilalGLNiv~G~aGllslGhaAFfgIGAYt~AlL~~~~G~~fwlalp~a~l~aa 175 (416)
T PRK11301 96 LVLAVAWPFFVSRGAVDIATLTLIYVILGLGLNIVVGLAGLLDLGYVGFYAVGAYTYALLNHYYGLGFWECLPIAGLMAA 175 (416)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999988752136899999999999999778999724330336999999999999999997249978999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCC
Q ss_conf 987654444543213457777999889899999855540587678857765211212347643---------43433331
Q gi|254780896|r 105 ACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLI---------RFFRFPSS 175 (351)
Q Consensus 105 ~~g~l~g~~~~rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~---------~~~~~~~~ 175 (351)
T Consensus 176 ~~g~llG~P~LRLrG~YLAIaTLaf~eIi~~vl~n~~~lTGG~~Gi~gIp~p~lfG~~~~~~~~~~G~~~f~~~~g~~~~ 255 (416)
T PRK11301 176 LFGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLLNLTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFHEFFGLKYD 255 (416)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999988999803359999999999999999984366429975556799733255343444443333110000254556
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
Q ss_conf 00148999999999999999999996130599999996421222334202322367999998799999999999866440
Q gi|254780896|r 176 FVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDR 255 (351)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~ 255 (351)
T Consensus 256 ~~~~~~~~Y~val~l~~~~~~v~~~L~rS~~GRal~AIRedE~AA~alGInv~r~KL~AFalsA~~AGlAGaLyA~~~g~ 335 (416)
T PRK11301 256 PSHRVIFLYLVALLLVVLTLFVINRLLRMPLGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFAGFAGTFFAARQGF 335 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 32016999999999999999999998618585899999627999998597769999999999999999999999988163
Q ss_pred ECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 11354315899998898873474223899999999999999998731221000012344420258999999999999985
Q gi|254780896|r 256 ISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMR 335 (351)
Q Consensus 256 v~p~~~~~~~~~~~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~r 335 (351)
T Consensus 336 IsP~~F~~~~S~~iL~mVVlGG~Gs~~G~ilGA~il~~LpE~lr~~---------------~~~r~lvfG~lLvl~mlf~ 400 (416)
T PRK11301 336 VSPESFTFIESAFILAIVVLGGMGSQLGVILAAILLVVLPELMRDF---------------NEYRMLMFGLLMVLMMIWR 400 (416)
T ss_pred ECCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHC
T ss_conf 4833065999999797513327645199999999999999999765---------------6559999999999999986
Q ss_pred CCCCCCCCCCHHHCCC
Q ss_conf 8996566740210159
Q gi|254780896|r 336 SHSLLRLRTPSNFLER 351 (351)
Q Consensus 336 P~Gl~g~r~~~~~~~~ 351 (351)
T Consensus 401 P~GLlp~~r~~~~~~~ 416 (416)
T PRK11301 401 PQGLLPMTRPHLELKN 416 (416)
T ss_pred CCCCCCCCCCCHHHCC
T ss_conf 9988998764313049