HHsearch alignment for GI: 254780896 and conserved domain: TIGR03408
>TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=0 Score=353.08 Aligned_cols=283 Identities=18% Similarity=0.254 Sum_probs=241.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC-------------------C----
Q ss_conf 14723799999999999999999999999843224899999999999999972045-------------------6----
Q gi|254780896|r 33 TKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRY-------------------G---- 89 (351)
Q Consensus 33 ~~~~~~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~-------------------g---- 89 (351)
T Consensus 2 ~~~~~y~l~l~~~~~iyal~algl~l~~G~~G~~nfgh~af~~lGAY~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 81 (313)
T TIGR03408 2 FHLSDFRLNLLGKYLCYAIVALGIDLIWGYTGILSLGQGVFFGLGGYAMAMYLKLQASGEGTTGLPDFMLWNGVTELPWF 81 (313)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHH
T ss_conf 70254799999999999999999999998656953999999999999999999873123311131177764100013046
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----53036533578898898765444454--321345777799988989999985554058767885776521121234
Q gi|254780896|r 90 ----LSIWLLIPVSAMISGACGMIMGLPSL--KFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTV 163 (351)
Q Consensus 90 ----~~~~~ai~~a~~~~a~~g~l~g~~~~--rl~g~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~ 163 (351)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~rl~g~y~ai~Tla~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~--- 158 (313)
T TIGR03408 82 WQPFASFPFALLAVVLVPGLLAFLLGYFVFRSRIKGVYFSIITQALALALALLFVGQQTGTGGTNGLTDFKTLLGFD--- 158 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---
T ss_conf 53245699999999999999999999999988611218899999999999999963732258877666762012566---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76434343333100148999999999999999999996130599999996421222334202322367999998799999
Q gi|254780896|r 164 RSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIG 243 (351)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAg 243 (351)
T Consensus 159 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~~G~~lrAvr~ne~aa~~lGinv~r~k~~aF~isa~lag 228 (313)
T TIGR03408 159 ----------LSSDSTKRALYFLTAALLALAFLLCRWLVRSRFGRVLIAIRDAENRVRFLGYDPANYKVFVFVLSAGIAG 228 (313)
T ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf ----------6664213899999999999999999999873898988857616699988288299999999999999999
Q ss_pred HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 99999986644011354315899998898873474223899999999999999998731221000012344420258999
Q gi|254780896|r 244 MAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTL 323 (351)
Q Consensus 244 iaG~l~a~~~~~v~p~~~~~~~~~~~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 323 (351)
T Consensus 229 laG~l~a~~~~~v~P~~f~~~~~i~~~~~vvlGG~Gs~~GavlGa~ll~~l~~~~~~~~--------------~~~~~~i 294 (313)
T TIGR03408 229 IAGALYVPQVGIISPSEMGIVPSIEMVIWVAVGGRGTLIGAVLGALLVNYAKTFFSEAF--------------PEAWLYI 294 (313)
T ss_pred HHHHHHHHHCCEECHHHCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_conf 99999998706348343659999998883045688531899999999999999999865--------------6699999
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999858996566
Q gi|254780896|r 324 MVIALFLVILMRSHSLLRL 342 (351)
Q Consensus 324 ~~~~lilvll~rP~Gl~g~ 342 (351)
T Consensus 295 ~g~ili~ill~~P~GL~Gl 313 (313)
T TIGR03408 295 LGALFVVVVLFLPKGLAGL 313 (313)
T ss_pred HHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999918972178