HHsearch alignment for GI: 254780896 and conserved domain: TIGR03409

>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00  E-value=0  Score=322.67  Aligned_cols=279  Identities=19%  Similarity=0.219  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799999999999999999999999843224899999999999999972045------65303653357889889876544
Q gi|254780896|r   38 YIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRY------GLSIWLLIPVSAMISGACGMIMG  111 (351)
Q Consensus        38 ~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~------g~~~~~ai~~a~~~~a~~g~l~g  111 (351)
T Consensus         3 ~l~~gl~~g~iyal~AlGl~Li~g~~g~lnfahg~f~~~GAY~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~l~g~~i~   82 (291)
T TIGR03409         3 QLFSGLSLGSILLLAALGLAITFGQMGVINMAHGEFIMIGAYTTYVVQQLFSAPGLADLYLLIAIPLAFLVSALLGALIE   82 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999999893820099999999999999999998705235578999999999999999999999


Q ss_pred             HHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             445432-13--457777999889899999855540587678857765211212347643434333310014899999999
Q gi|254780896|r  112 LPSLKF-RG--DYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLL  188 (351)
Q Consensus       112 ~~~~rl-~g--~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (351)
T Consensus        83 ~~~~r~l~~~~~~~~i~t~g~~~~l~~~~~~~~----g~~~~~~~~p~~~~~~-----~~~----~g~~~~~~~~~~~~~  149 (291)
T TIGR03409        83 RTVIRHLYGRPLDTLLATWGISLILQQAARSIF----GAPNVPVTAPEWLSGG-----LEI----TGALSLPYNRLFIIV  149 (291)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCHHHCCC-----CCC----CCCCCCCHHHHHHHH
T ss_conf             999998812659999999999999999999930----8887676781430376-----011----675223199999999


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH
Q ss_conf             99999999999961305999999964212223342023223679999987999999999998664401135431589999
Q gi|254780896|r  189 GMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENII  268 (351)
Q Consensus       189 ~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~  268 (351)
T Consensus       150 ~~~~~~~~l~~~l~rT~~G~~lrAi~~n~~aA~~~GInv~r~~~~af~is~~laglaG~l~a~-~~~v~p~~-g~~~~~~  227 (291)
T TIGR03409       150 LALAVLLALALLLYRTRLGLRVRAVTQNRVMAAALGINTRRVDALTFALGSGIAGVAGVALTL-IGNVGPTL-GQGYIVD  227 (291)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCC-HHHHHHH
T ss_conf             999999999999837856588888724799999859989999999999999999999999998-86589752-3999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             8898873474223899999999999999998731221000012344420258999999999999985899656674
Q gi|254780896|r  269 VISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRT  344 (351)
Q Consensus       269 ~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~  344 (351)
T Consensus       228 ~~~~~vlGG~gs~~Gai~Ga~~lg~l~~~~~~~~~~-------------~~~~~~~~~~li~vLl~rP~Gl~g~k~  290 (291)
T TIGR03409       228 SFLVVVFGGVGSLWGTVVAAFGLGVANKILEYFTGA-------------SLAKVLVLVLIILFLQWRPQGLFALKG  290 (291)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999999746564589999999999999999987028-------------999999999999999986998689998