HHsearch alignment for GI: 254780896 and conserved domain: TIGR03409
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=0 Score=322.67 Aligned_cols=279 Identities=19% Similarity=0.219 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999999999999999999999843224899999999999999972045------65303653357889889876544
Q gi|254780896|r 38 YIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRY------GLSIWLLIPVSAMISGACGMIMG 111 (351)
Q Consensus 38 ~~~~~~~~~~i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~------g~~~~~ai~~a~~~~a~~g~l~g 111 (351)
T Consensus 3 ~l~~gl~~g~iyal~AlGl~Li~g~~g~lnfahg~f~~~GAY~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~l~g~~i~ 82 (291)
T TIGR03409 3 QLFSGLSLGSILLLAALGLAITFGQMGVINMAHGEFIMIGAYTTYVVQQLFSAPGLADLYLLIAIPLAFLVSALLGALIE 82 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999893820099999999999999999998705235578999999999999999999999
Q ss_pred HHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 445432-13--457777999889899999855540587678857765211212347643434333310014899999999
Q gi|254780896|r 112 LPSLKF-RG--DYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLL 188 (351)
Q Consensus 112 ~~~~rl-~g--~~~~i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (351)
T Consensus 83 ~~~~r~l~~~~~~~~i~t~g~~~~l~~~~~~~~----g~~~~~~~~p~~~~~~-----~~~----~g~~~~~~~~~~~~~ 149 (291)
T TIGR03409 83 RTVIRHLYGRPLDTLLATWGISLILQQAARSIF----GAPNVPVTAPEWLSGG-----LEI----TGALSLPYNRLFIIV 149 (291)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCHHHCCC-----CCC----CCCCCCCHHHHHHHH
T ss_conf 999998812659999999999999999999930----8887676781430376-----011----675223199999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHH
Q ss_conf 99999999999961305999999964212223342023223679999987999999999998664401135431589999
Q gi|254780896|r 189 GMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENII 268 (351)
Q Consensus 189 ~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~~~~~~~~ 268 (351)
T Consensus 150 ~~~~~~~~l~~~l~rT~~G~~lrAi~~n~~aA~~~GInv~r~~~~af~is~~laglaG~l~a~-~~~v~p~~-g~~~~~~ 227 (291)
T TIGR03409 150 LALAVLLALALLLYRTRLGLRVRAVTQNRVMAAALGINTRRVDALTFALGSGIAGVAGVALTL-IGNVGPTL-GQGYIVD 227 (291)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCC-HHHHHHH
T ss_conf 999999999999837856588888724799999859989999999999999999999999998-86589752-3999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 8898873474223899999999999999998731221000012344420258999999999999985899656674
Q gi|254780896|r 269 VISIVILGGMTSLSKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRT 344 (351)
Q Consensus 269 ~~~~vvlGG~gs~~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~Gl~g~r~ 344 (351)
T Consensus 228 ~~~~~vlGG~gs~~Gai~Ga~~lg~l~~~~~~~~~~-------------~~~~~~~~~~li~vLl~rP~Gl~g~k~ 290 (291)
T TIGR03409 228 SFLVVVFGGVGSLWGTVVAAFGLGVANKILEYFTGA-------------SLAKVLVLVLIILFLQWRPQGLFALKG 290 (291)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999746564589999999999999999987028-------------999999999999999986998689998