HHsearch alignment for GI: 254780896 and conserved domain: cd06580

>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=99.97  E-value=1.9e-28  Score=190.59  Aligned_cols=205  Identities=20%  Similarity=0.267  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999843224899999999999999972045653036533578898898----76544445432134577
Q gi|254780896|r   48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC----GMIMGLPSLKFRGDYLA  123 (351)
Q Consensus        48 i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~----g~l~g~~~~rl~g~~~~  123 (351)
T Consensus         3 Plll~alg~~~~~-r~G~~Nig~eG~~~~GA~~aa~~~~~~~~~~~~~~~l~~l~a~~~G~~~g~i~~~l~~~~~~~~-~   80 (234)
T cd06580           3 PLILAALGVAISF-RAGVFNIGLEGQMLLGAFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNE-V   80 (234)
T ss_pred             HHHHHHHHHHHHH-HHCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-H
T ss_conf             7999999999999-9488206098899999999999999635651589999999999999999999999999968888-9


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             77999889899999855540587678857765211212347643434333310014899999999999999999999613
Q gi|254780896|r  124 IATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRR  203 (351)
Q Consensus       124 i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~r  203 (351)
T Consensus        81 i~tl~ln~~~~~~~~----------------------------------------------~l~~i~~~~~~~~~~~l~~  114 (234)
T cd06580          81 ISGLMLNYIALGLTS----------------------------------------------YLLLLALLLVILVWLLLYR  114 (234)
T ss_pred             HHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999----------------------------------------------9999999999999999998


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HEECCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf             05999999964212223342023223679999987999999999998664-40113543158999988988734742238
Q gi|254780896|r  204 TAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASR-DRISPDMFKFSENIIVISIVILGGMTSLS  282 (351)
Q Consensus       204 T~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~-~~v~p~~~~~~~~~~~~~~vvlGG~gs~~  282 (351)
T Consensus       115 T~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGlaG~~~~~~~~~~~~~~-~~~g~g~~aia~~ilg~-~~p~  192 (234)
T cd06580         115 TRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEG-MSAGYGFIAIAVALLGR-WNPL  192 (234)
T ss_pred             CHHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHC-CCHH
T ss_conf             878745003318899998879888899999999999999999999998650257767-76661499999999979-9889


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998731
Q gi|254780896|r  283 KIAKATAILIGVVELCCGMN  302 (351)
Q Consensus       283 Ga~lGa~~l~~~~~~~~~~~  302 (351)
T Consensus       193 g~~~~al~fg~l~~g~~~lq  212 (234)
T cd06580         193 GILLAALLFGALEAGGIALQ  212 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999997