HHsearch alignment for GI: 254780896 and conserved domain: cd06580
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=99.97 E-value=1.9e-28 Score=190.59 Aligned_cols=205 Identities=20% Similarity=0.267 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999843224899999999999999972045653036533578898898----76544445432134577
Q gi|254780896|r 48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC----GMIMGLPSLKFRGDYLA 123 (351)
Q Consensus 48 i~~l~alGl~li~G~~G~inl~~g~~~~~Gay~~~~l~~~~g~~~~~ai~~a~~~~a~~----g~l~g~~~~rl~g~~~~ 123 (351)
T Consensus 3 Plll~alg~~~~~-r~G~~Nig~eG~~~~GA~~aa~~~~~~~~~~~~~~~l~~l~a~~~G~~~g~i~~~l~~~~~~~~-~ 80 (234)
T cd06580 3 PLILAALGVAISF-RAGVFNIGLEGQMLLGAFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKAKLGVNE-V 80 (234)
T ss_pred HHHHHHHHHHHHH-HHCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-H
T ss_conf 7999999999999-9488206098899999999999999635651589999999999999999999999999968888-9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 77999889899999855540587678857765211212347643434333310014899999999999999999999613
Q gi|254780896|r 124 IATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRR 203 (351)
Q Consensus 124 i~Tl~~~~i~~~~~~~~~~~~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~r 203 (351)
T Consensus 81 i~tl~ln~~~~~~~~----------------------------------------------~l~~i~~~~~~~~~~~l~~ 114 (234)
T cd06580 81 ISGLMLNYIALGLTS----------------------------------------------YLLLLALLLVILVWLLLYR 114 (234)
T ss_pred HHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999----------------------------------------------9999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HEECCCCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 05999999964212223342023223679999987999999999998664-40113543158999988988734742238
Q gi|254780896|r 204 TAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASR-DRISPDMFKFSENIIVISIVILGGMTSLS 282 (351)
Q Consensus 204 T~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~-~~v~p~~~~~~~~~~~~~~vvlGG~gs~~ 282 (351)
T Consensus 115 T~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGlaG~~~~~~~~~~~~~~-~~~g~g~~aia~~ilg~-~~p~ 192 (234)
T cd06580 115 TRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEG-MSAGYGFIAIAVALLGR-WNPL 192 (234)
T ss_pred CHHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHHHHHHC-CCHH
T ss_conf 878745003318899998879888899999999999999999999998650257767-76661499999999979-9889
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998731
Q gi|254780896|r 283 KIAKATAILIGVVELCCGMN 302 (351)
Q Consensus 283 Ga~lGa~~l~~~~~~~~~~~ 302 (351)
T Consensus 193 g~~~~al~fg~l~~g~~~lq 212 (234)
T cd06580 193 GILLAALLFGALEAGGIALQ 212 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999997