Query gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 351 No_of_seqs 156 out of 4108 Neff 8.1 Searched_HMMs 23785 Date Wed Jun 1 00:01:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780896.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2nq2_A Hypothetical ABC transp 95.3 0.1 4.4E-06 26.7 24.2 112 207-337 215-331 (337) 2 2qi9_A Vitamin B12 import syst 93.3 0.29 1.2E-05 24.0 20.4 112 207-336 208-324 (326) 3 2rdd_B UPF0092 membrane protei 17.7 31 0.0013 11.6 1.1 12 326-337 13-24 (37) 4 1uhu_A Product of riken cDNA 3 13.3 41 0.0017 10.9 2.5 35 203-237 7-41 (105) 5 1y6u_A XIS, excisionase from t 12.8 42 0.0018 10.8 1.2 18 217-234 20-37 (70) 6 2r6g_F Maltose transport syste 11.2 48 0.002 10.5 6.3 13 204-216 311-323 (514) 7 1wur_A GTP cyclohydrolase I; b 10.8 49 0.0021 10.4 2.0 33 207-239 43-75 (220) 8 1mn8_A Core protein P15; helic 10.2 51 0.0022 10.3 2.5 35 203-237 7-41 (100) 9 3few_X Colicin S4; cell lysis, 10.1 52 0.0022 10.3 0.7 27 225-251 425-451 (505) 10 1rp1_A Pancreatic lipase relat 9.3 26 0.0011 12.1 -1.6 30 217-246 135-164 (450) No 1 >2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Probab=95.29 E-value=0.1 Score=26.69 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=65.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC-CHHHHHHHHHHHHHCCCCC----H Q ss_conf 9999996421222334202322367999998799999999999866440113543-1589999889887347422----3 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMF-KFSENIIVISIVILGGMTS----L 281 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~-~~~~~~~~~~~vvlGG~gs----~ 281 (351) .|++....-+||.|+.+|+|++|.|.....+++.+++.+=.. .| |-.| ++. ..-++--..| ... + T Consensus 215 ~~~l~~l~lG~~~A~sLGv~v~~~r~~~l~l~~llta~~vs~----~G---~I~FvGLi--~Phiar~l~g-~~~~~~l~ 284 (337) T 2nq2_A 215 SWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAI----SG---SIGWVGLI--IPHLSRMLVG-ANHQSLLP 284 (337) T ss_dssp TTGGGGGGSCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HC---CCCSSTTH--HHHHHHHHHC-SCHHHHHH T ss_pred HCCCCHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC----CC---CEEEHHHH--HHHHHHHHHC-CCCCHHHH T ss_conf 300562107938898789979999999999999999999963----77---63038740--9999999818-88533999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 89999999999999999873122100001234442025899999999999998589 Q gi|254780896|r 282 SKIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSH 337 (351) Q Consensus 282 ~Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP~ 337 (351) ..++.|+.++...+...+...+. +........+++...++.+++|.+ T Consensus 285 ~s~l~Ga~lll~aD~i~r~l~p~---------elPvG~vtaliG~p~fl~ll~r~~ 331 (337) T 2nq2_A 285 CTMLVGATYMLLVDNVARSLSDA---------EIPISILTALIGAPLFGVLVYKLK 331 (337) T ss_dssp HHHHHHHHHHHHHHHHHHHSCSS---------CCCHHHHHHHHHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHHHHHHHHHCCCC---------CEEHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999998665677---------731999999999999999999852 No 2 >2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_A* Probab=93.25 E-value=0.29 Score=23.98 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=64.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC-CHHHHHHHHHHHHHCCCCC---HH Q ss_conf 9999996421222334202322367999998799999999999866440113543-1589999889887347422---38 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMF-KFSENIIVISIVILGGMTS---LS 282 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~-~~~~~~~~~~~vvlGG~gs---~~ 282 (351) .|++....-+||.|+.+|+|++|.|.....+++.+++.+=.. . .|-.| ++. ..-++- .+.|... ++ T Consensus 208 ~~~L~~l~lG~~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~----~---G~I~FvGLi--~PhiaR-~~~g~~~~~~l~ 277 (326) T 2qi9_A 208 SRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVAL----A---GAIGFIGLV--IPHILR-LSGLTDHRVLLP 277 (326) T ss_dssp HHHHHHHHTCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH----H---CCCCSSTTH--HHHHHH-TTTCCSHHHHHH T ss_pred HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----H---CHHHHHHHH--HHHHHH-HHCCCCCCHHHH T ss_conf 988777636849888679858998899886889999999985----1---569999998--999999-862777436999 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf -999999999999999987312210000123444202589999999999999858 Q gi|254780896|r 283 -KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351) Q Consensus 283 -Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351) -++.|+.++...+...+....+ ..........+++....+.++.|- T Consensus 278 ~s~l~Ga~lll~aD~i~r~i~~p--------~eiPvGvitaliG~P~fi~Ll~r~ 324 (326) T 2qi9_A 278 GCALAGASALLLADIVARLALAA--------AELPIGVVTATLGAPVFIWLLLKA 324 (326) T ss_dssp HHHHHHHHHHHHHHHHHHSSSTT--------CCCCHHHHHHHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999661466--------542199999999999999977204 No 3 >2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} Probab=17.65 E-value=31 Score=11.62 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=5.2 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998589 Q gi|254780896|r 326 IALFLVILMRSH 337 (351) Q Consensus 326 ~~lilvll~rP~ 337 (351) ++++.+++.||| T Consensus 13 f~ifYFliIRPQ 24 (37) T 2rdd_B 13 GLIFYFMILRPQ 24 (37) T ss_dssp HHHHHHHTHHHH T ss_pred HHHHHHHHHCCH T ss_conf 999999995701 No 4 >1uhu_A Product of riken cDNA 3110009E22; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.61.1.6 Probab=13.26 E-value=41 Score=10.92 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=29.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30599999996421222334202322367999998 Q gi|254780896|r 203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAV 237 (351) Q Consensus 203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~i 237 (351) .|+++.-+.--.|=+.+|...|++++|-|+..|+- T Consensus 7 ~TPL~l~L~hw~dv~~rA~n~sv~vkKgkl~t~C~ 41 (105) T 1uhu_A 7 GTPLSLTLDHWSEIRSRAHNLSVEIKKGPWRTFCA 41 (105) T ss_dssp CCHHHHHHHTHHHHHHHHHHHTCCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC T ss_conf 89789999888998888733773012460554421 No 5 >1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} Probab=12.76 E-value=42 Score=10.83 Aligned_cols=18 Identities=11% Similarity=-0.206 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 222334202322367999 Q gi|254780896|r 217 QKAFFSLNTTIIFAKLSA 234 (351) Q Consensus 217 ~~aA~~~Ginv~~~~~~a 234 (351) +|||++.||..++.+-.+ T Consensus 20 ~EAa~Y~gIg~~klr~L~ 37 (70) T 1y6u_A 20 EEASKYFRIGENKLRRLA 37 (70) T ss_dssp HHHHHHTCSCHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHH T ss_conf 999999692799999999 No 6 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Probab=11.17 E-value=48 Score=10.52 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=4.7 Q ss_pred CHHHHHHHHHHHH Q ss_conf 0599999996421 Q gi|254780896|r 204 TAISNAWRTIRDN 216 (351) Q Consensus 204 T~~G~~lrAv~~n 216 (351) .|.-+..|.+-.- T Consensus 311 ~r~~~~~~~l~~l 323 (514) T 2r6g_F 311 LRGKAVYRVLLIL 323 (514) T ss_dssp STTHHHHHHHTTH T ss_pred CCCHHHHHHHEEH T ss_conf 3511130251269 No 7 >1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine, tetrahydrobiopterin, structural genomics; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A* Probab=10.77 E-value=49 Score=10.43 Aligned_cols=33 Identities=21% Similarity=0.062 Sum_probs=25.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999642122233420232236799999879 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSS 239 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~ 239 (351) -..+++++|||++..+.+.+-+-.|.+....+| T Consensus 43 ~~iL~~lGeDp~regL~~TP~Rvak~~~e~~~G 75 (220) T 1wur_A 43 AEWLQVIGEDPGREGLLKTPERVAKAWAFLTRG 75 (220) T ss_dssp HHHHHHTTCCTTSGGGTTHHHHHHHHHHHHTGG T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 999999679998533202699999999999646 No 8 >1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} SCOP: a.61.1.6 Probab=10.24 E-value=51 Score=10.32 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=28.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30599999996421222334202322367999998 Q gi|254780896|r 203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAV 237 (351) Q Consensus 203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~i 237 (351) .|+++.-+.--+|=+.+|...|++++|-|...|+- T Consensus 7 sTPL~l~L~hw~d~~~ra~n~sv~vkkgkl~tlC~ 41 (100) T 1mn8_A 7 TTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCS 41 (100) T ss_dssp CCHHHHHHHTHHHHHHHHHHTTCCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEC T ss_conf 67789999879998777623772231351011211 No 9 >3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli} Probab=10.15 E-value=52 Score=10.30 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 232236799999879999999999986 Q gi|254780896|r 225 TTIIFAKLSAFAVSSAFIGMAGAFFAA 251 (351) Q Consensus 225 inv~~~~~~af~is~~lAgiaG~l~a~ 251 (351) ..|-.+++-+|+++++-++++..+++. T Consensus 425 w~p~~~~~e~~~~~~~a~~~~~~~~~~ 451 (505) T 3few_X 425 WGPLMLEVESWVLSGIASAVALGVFSA 451 (505) T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 537999999999976899999999999 No 10 >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A Probab=9.31 E-value=26 Score=12.07 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 222334202322367999998799999999 Q gi|254780896|r 217 QKAFFSLNTTIIFAKLSAFAVSSAFIGMAG 246 (351) Q Consensus 217 ~~aA~~~Ginv~~~~~~af~is~~lAgiaG 246 (351) ....+..|++.+++.++.+.+++-+||.+| T Consensus 135 ~~l~~~~g~~~~~vhLIGhSLGAhiAG~aG 164 (450) T 1rp1_A 135 SMLSANYSYSPSQVQLIGHSLGAHVAGEAG 164 (450) T ss_dssp HHHHHHHCCCGGGEEEEEETHHHHHHHHHH T ss_pred HHHHHHCCCCHHHEEEEEECHHHHHHHHHH T ss_conf 999984299866628986059999999998 Done!