HHSEARCH alignment of GI: 254780896 and SCOP domain: d1l7va_

Alignment

Probab=94.44  E-value=0.1  Score=25.32  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC-CHHHHHHHHHHHHHCCCCC---HH
Q ss_conf             9999996421222334202322367999998799999999999866440113543-1589999889887347422---38
Q gi|254780896|r  207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMF-KFSENIIVISIVILGGMTS---LS  282 (351)
Q Consensus       207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~-~~~~~~~~~~~vvlGG~gs---~~  282 (351)
                      -|++....-+||.|+.+|+|++|+|......++.+++.+=.+    .|.+   .| ++.  ..-++- .+.|...   ++
T Consensus       208 ~~~L~~L~lgd~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~----~G~I---~FvGLi--~PhiaR-~l~g~~~~~~lp  277 (324)
T d1l7va_         208 SRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVAL----AGAI---GFIGLV--IPHILR-LCGLTDHRVLLP  277 (324)
T ss_dssp             HHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HCCC---CSSSSH--HHHHHH-HTTCCSHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----CCHH---HHHHHH--HHHHHH-HHCCCCCCHHHH
T ss_conf             844665530368887068666777799999999999999972----3644---555875--799999-860777517999


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             -99999999999999998731221000012344420258999999999999985
Q gi|254780896|r  283 -KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMR  335 (351)
Q Consensus       283 -Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~r  335 (351)
                       -++.|+.++...+...+....+        .+........+++....+.++.|
T Consensus       278 ~s~l~Ga~lll~aD~l~r~i~~p--------~eiPvGvitaliG~P~fi~Ll~r  323 (324)
T d1l7va_         278 GCALAGASALLLADIVARLALAA--------AELPIGVVTATLGAPVFIWLLLK  323 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSS--------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999760466--------56329999999999999999983

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: ABC transporter involved in vitamin B12 uptake, BtuC
superfamily: ABC transporter involved in vitamin B12 uptake, BtuC
family: ABC transporter involved in vitamin B12 uptake, BtuC
domain: ABC transporter involved in vitamin B12 uptake, BtuC
species: Escherichia coli [TaxId: 562]