Query         gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 351
No_of_seqs    156 out of 4108
Neff          8.1 
Searched_HMMs 13730
Date          Wed Jun  1 11:05:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780896.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1l7va_ f.22.1.1 (A:) ABC tran  94.4     0.1 7.4E-06   25.3  20.4  111  207-335   208-323 (324)
  2 d2e74g1 f.23.26.1 (G:9-35) Pet  15.1      21  0.0015   11.2   3.0   24  237-260     3-26  (27)
  3 d1wura1 d.96.1.1 (A:32-216) GT  14.6      22  0.0016   11.2   2.0   34  206-239    11-44  (185)
  4 d1rp1a2 c.69.1.19 (A:1-336) Pa  10.3      13 0.00097   12.4  -1.6   28  222-249   140-167 (337)
  5 d1uhua_ a.61.1.6 (A:) Product    9.2      33  0.0024   10.1   2.5   35  203-237     7-41  (105)
  6 d1mn8a_ a.61.1.6 (A:) MMLV mat   9.1      33  0.0024   10.0   2.5   35  203-237     4-38  (95)
  7 d1wpla_ d.96.1.1 (A:) GTP cycl   8.4      36  0.0026    9.8   2.9   36  205-240    18-53  (194)
  8 d1bu8a2 c.69.1.19 (A:1-336) Pa   8.0      16  0.0012   11.9  -1.9   36  221-256   139-174 (338)
  9 d1q1ha_ a.4.5.41 (A:) Transcri   6.7      49  0.0035    9.0   1.8   26  214-239    34-59  (88)
 10 d1y9qa1 a.35.1.8 (A:4-82) Prob   6.7      49  0.0035    9.0   2.6   29  202-230     5-38  (79)

No 1  
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=94.44  E-value=0.1  Score=25.32  Aligned_cols=111  Identities=14%  Similarity=0.039  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC-CHHHHHHHHHHHHHCCCCC---HH
Q ss_conf             9999996421222334202322367999998799999999999866440113543-1589999889887347422---38
Q gi|254780896|r  207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMF-KFSENIIVISIVILGGMTS---LS  282 (351)
Q Consensus       207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~-~~~~~~~~~~~vvlGG~gs---~~  282 (351)
                      -|++....-+||.|+.+|+|++|+|......++.+++.+=.+    .|.+   .| ++.  ..-++- .+.|...   ++
T Consensus       208 ~~~L~~L~lgd~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~----~G~I---~FvGLi--~PhiaR-~l~g~~~~~~lp  277 (324)
T d1l7va_         208 SRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVAL----AGAI---GFIGLV--IPHILR-LCGLTDHRVLLP  277 (324)
T ss_dssp             HHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HCCC---CSSSSH--HHHHHH-HTTCCSHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----CCHH---HHHHHH--HHHHHH-HHCCCCCCHHHH
T ss_conf             844665530368887068666777799999999999999972----3644---555875--799999-860777517999


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             -99999999999999998731221000012344420258999999999999985
Q gi|254780896|r  283 -KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMR  335 (351)
Q Consensus       283 -Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~r  335 (351)
                       -++.|+.++...+...+....+        .+........+++....+.++.|
T Consensus       278 ~s~l~Ga~lll~aD~l~r~i~~p--------~eiPvGvitaliG~P~fi~Ll~r  323 (324)
T d1l7va_         278 GCALAGASALLLADIVARLALAA--------AELPIGVVTATLGAPVFIWLLLK  323 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSS--------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999760466--------56329999999999999999983


No 2  
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=15.08  E-value=21  Score=11.23  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHEECCCC
Q ss_conf             879999999999986644011354
Q gi|254780896|r  237 VSSAFIGMAGAFFAASRDRISPDM  260 (351)
Q Consensus       237 is~~lAgiaG~l~a~~~~~v~p~~  260 (351)
                      ++-.++.++|.+++.++++-.|+.
T Consensus         3 lgli~~tl~glf~aayqqykrpne   26 (27)
T d2e74g1           3 LGLVFATLGGLFYAAYQQYKRPNE   26 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             EEEHHHHHHHHHHHHHHHHCCCCC
T ss_conf             642489887899999998548777


No 3  
>d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]}
Probab=14.64  E-value=22  Score=11.15  Aligned_cols=34  Identities=21%  Similarity=0.052  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999642122233420232236799999879
Q gi|254780896|r  206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSS  239 (351)
Q Consensus       206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~  239 (351)
                      .-..+++++|||++..+...+-+-.|.+....+|
T Consensus        11 v~~iL~~lGeDp~RegL~~TP~RVAkay~El~~G   44 (185)
T d1wura1          11 AAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRG   44 (185)
T ss_dssp             HHHHHHHTTCCTTSGGGTTHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCC
T ss_conf             9999999679998121113689999999998543


No 4  
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}
Probab=10.29  E-value=13  Score=12.43  Aligned_cols=28  Identities=14%  Similarity=0.131  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4202322367999998799999999999
Q gi|254780896|r  222 SLNTTIIFAKLSAFAVSSAFIGMAGAFF  249 (351)
Q Consensus       222 ~~Ginv~~~~~~af~is~~lAgiaG~l~  249 (351)
                      ..|++.+++.++.+.+++-+||.+|--.
T Consensus       140 ~~g~~~~~vhlIGhSLGAhvAG~aG~~~  167 (337)
T d1rp1a2         140 NYSYSPSQVQLIGHSLGAHVAGEAGSRT  167 (337)
T ss_dssp             HHCCCGGGEEEEEETHHHHHHHHHHHTS
T ss_pred             HCCCCHHHEEEEEECHHHHHHHHHHHHH
T ss_conf             5399854657986347776667998750


No 5  
>d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]}
Probab=9.15  E-value=33  Score=10.07  Aligned_cols=35  Identities=14%  Similarity=0.108  Sum_probs=28.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             30599999996421222334202322367999998
Q gi|254780896|r  203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAV  237 (351)
Q Consensus       203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~i  237 (351)
                      .|+++..+.--.|=+.+|...|++++|-++..|+-
T Consensus         7 ~TPL~l~L~hw~d~~~ra~n~sv~vkkgkl~tfC~   41 (105)
T d1uhua_           7 GTPLSLTLDHWSEIRSRAHNLSVEIKKGPWRTFCA   41 (105)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf             89789999999998888741674202561566542


No 6  
>d1mn8a_ a.61.1.6 (A:) MMLV matrix protein {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=9.08  E-value=33  Score=10.05  Aligned_cols=35  Identities=11%  Similarity=0.128  Sum_probs=28.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             30599999996421222334202322367999998
Q gi|254780896|r  203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAV  237 (351)
Q Consensus       203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~i  237 (351)
                      .|+++.-+.--+|=+.+|...|++++|-|...|+-
T Consensus         4 sTPL~l~L~hw~d~~~ra~n~sv~vkk~~l~t~C~   38 (95)
T d1mn8a_           4 TTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCS   38 (95)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHC
T ss_conf             66489999889998887640662131230111000


No 7  
>d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.36  E-value=36  Score=9.78  Aligned_cols=36  Identities=19%  Similarity=0.100  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             599999996421222334202322367999998799
Q gi|254780896|r  205 AISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSA  240 (351)
Q Consensus       205 ~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~  240 (351)
                      .+..-+++++|||++..+...+-+-.|.+....+|-
T Consensus        18 Av~~iL~aLGeDp~regL~~TP~RVaka~~el~~Gy   53 (194)
T d1wpla_          18 AYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGY   53 (194)
T ss_dssp             HHHHHHHHHTCCTTSGGGTTHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHC
T ss_conf             999999996899995100016899999999984012


No 8  
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.02  E-value=16  Score=11.93  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
Q ss_conf             342023223679999987999999999998664401
Q gi|254780896|r  221 FSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRI  256 (351)
Q Consensus       221 ~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v  256 (351)
                      +..|++.+++.++.+.+++=+||.+|-.+..+.+.+
T Consensus       139 ~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrI  174 (338)
T d1bu8a2         139 TEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRI  174 (338)
T ss_dssp             HHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEE
T ss_pred             HHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC
T ss_conf             854997100688853488888889987605654654


No 9  
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.69  E-value=49  Score=9.02  Aligned_cols=26  Identities=8%  Similarity=-0.023  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42122233420232236799999879
Q gi|254780896|r  214 RDNQKAFFSLNTTIIFAKLSAFAVSS  239 (351)
Q Consensus       214 ~~n~~aA~~~Ginv~~~~~~af~is~  239 (351)
                      ..|++.|+..|++++.++-.-|.+..
T Consensus        34 vtDe~iA~~tgi~in~VRk~Ly~L~~   59 (88)
T d1q1ha_          34 MTDEEIANQLNIKVNDVRKKLNLLEE   59 (88)
T ss_dssp             BCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             78999999969969999999999986


No 10 
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=6.68  E-value=49  Score=9.01  Aligned_cols=29  Identities=10%  Similarity=0.153  Sum_probs=19.4

Q ss_pred             HCCHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf             130599999996421-----22233420232236
Q gi|254780896|r  202 RRTAISNAWRTIRDN-----QKAFFSLNTTIIFA  230 (351)
Q Consensus       202 ~rT~~G~~lrAv~~n-----~~aA~~~Ginv~~~  230 (351)
                      .++.+|..+|..++.     ++.|+.+|++...+
T Consensus         5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i   38 (79)
T d1y9qa1           5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAML   38 (79)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
T ss_conf             9999999999999982999999999877116489


Done!