Query gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 351 No_of_seqs 156 out of 4108 Neff 8.1 Searched_HMMs 13730 Date Wed Jun 1 11:05:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780896.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1l7va_ f.22.1.1 (A:) ABC tran 94.4 0.1 7.4E-06 25.3 20.4 111 207-335 208-323 (324) 2 d2e74g1 f.23.26.1 (G:9-35) Pet 15.1 21 0.0015 11.2 3.0 24 237-260 3-26 (27) 3 d1wura1 d.96.1.1 (A:32-216) GT 14.6 22 0.0016 11.2 2.0 34 206-239 11-44 (185) 4 d1rp1a2 c.69.1.19 (A:1-336) Pa 10.3 13 0.00097 12.4 -1.6 28 222-249 140-167 (337) 5 d1uhua_ a.61.1.6 (A:) Product 9.2 33 0.0024 10.1 2.5 35 203-237 7-41 (105) 6 d1mn8a_ a.61.1.6 (A:) MMLV mat 9.1 33 0.0024 10.0 2.5 35 203-237 4-38 (95) 7 d1wpla_ d.96.1.1 (A:) GTP cycl 8.4 36 0.0026 9.8 2.9 36 205-240 18-53 (194) 8 d1bu8a2 c.69.1.19 (A:1-336) Pa 8.0 16 0.0012 11.9 -1.9 36 221-256 139-174 (338) 9 d1q1ha_ a.4.5.41 (A:) Transcri 6.7 49 0.0035 9.0 1.8 26 214-239 34-59 (88) 10 d1y9qa1 a.35.1.8 (A:4-82) Prob 6.7 49 0.0035 9.0 2.6 29 202-230 5-38 (79) No 1 >d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]} Probab=94.44 E-value=0.1 Score=25.32 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=62.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC-CHHHHHHHHHHHHHCCCCC---HH Q ss_conf 9999996421222334202322367999998799999999999866440113543-1589999889887347422---38 Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMF-KFSENIIVISIVILGGMTS---LS 282 (351) Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~-~~~~~~~~~~~vvlGG~gs---~~ 282 (351) -|++....-+||.|+.+|+|++|+|......++.+++.+=.+ .|.+ .| ++. ..-++- .+.|... ++ T Consensus 208 ~~~L~~L~lgd~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~----~G~I---~FvGLi--~PhiaR-~l~g~~~~~~lp 277 (324) T d1l7va_ 208 SRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVAL----AGAI---GFIGLV--IPHILR-LCGLTDHRVLLP 277 (324) T ss_dssp HHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH----HCCC---CSSSSH--HHHHHH-HTTCCSHHHHHH T ss_pred HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH----CCHH---HHHHHH--HHHHHH-HHCCCCCCHHHH T ss_conf 844665530368887068666777799999999999999972----3644---555875--799999-860777517999 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf -99999999999999998731221000012344420258999999999999985 Q gi|254780896|r 283 -KIAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMR 335 (351) Q Consensus 283 -Ga~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~r 335 (351) -++.|+.++...+...+....+ .+........+++....+.++.| T Consensus 278 ~s~l~Ga~lll~aD~l~r~i~~p--------~eiPvGvitaliG~P~fi~Ll~r 323 (324) T d1l7va_ 278 GCALAGASALLLADIVARLALAA--------AELPIGVVTATLGAPVFIWLLLK 323 (324) T ss_dssp HHHHHHHHHHHHHHHHHHHSCSS--------SCCCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999760466--------56329999999999999999983 No 2 >d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Probab=15.08 E-value=21 Score=11.23 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=16.2 Q ss_pred HHHHHHHHHHHHHHHHHHEECCCC Q ss_conf 879999999999986644011354 Q gi|254780896|r 237 VSSAFIGMAGAFFAASRDRISPDM 260 (351) Q Consensus 237 is~~lAgiaG~l~a~~~~~v~p~~ 260 (351) ++-.++.++|.+++.++++-.|+. T Consensus 3 lgli~~tl~glf~aayqqykrpne 26 (27) T d2e74g1 3 LGLVFATLGGLFYAAYQQYKRPNE 26 (27) T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCC T ss_pred EEEHHHHHHHHHHHHHHHHCCCCC T ss_conf 642489887899999998548777 No 3 >d1wura1 d.96.1.1 (A:32-216) GTP cyclohydrolase I {Thermus thermophilus [TaxId: 274]} Probab=14.64 E-value=22 Score=11.15 Aligned_cols=34 Identities=21% Similarity=0.052 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999642122233420232236799999879 Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSS 239 (351) Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~ 239 (351) .-..+++++|||++..+...+-+-.|.+....+| T Consensus 11 v~~iL~~lGeDp~RegL~~TP~RVAkay~El~~G 44 (185) T d1wura1 11 AAEWLQVIGEDPGREGLLKTPERVAKAWAFLTRG 44 (185) T ss_dssp HHHHHHHTTCCTTSGGGTTHHHHHHHHHHHHTGG T ss_pred HHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHCC T ss_conf 9999999679998121113689999999998543 No 4 >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Probab=10.29 E-value=13 Score=12.43 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4202322367999998799999999999 Q gi|254780896|r 222 SLNTTIIFAKLSAFAVSSAFIGMAGAFF 249 (351) Q Consensus 222 ~~Ginv~~~~~~af~is~~lAgiaG~l~ 249 (351) ..|++.+++.++.+.+++-+||.+|--. T Consensus 140 ~~g~~~~~vhlIGhSLGAhvAG~aG~~~ 167 (337) T d1rp1a2 140 NYSYSPSQVQLIGHSLGAHVAGEAGSRT 167 (337) T ss_dssp HHCCCGGGEEEEEETHHHHHHHHHHHTS T ss_pred HCCCCHHHEEEEEECHHHHHHHHHHHHH T ss_conf 5399854657986347776667998750 No 5 >d1uhua_ a.61.1.6 (A:) Product of RIKEN cDNA 3110009e22 {Unclassified, murine endogenous retrovirus [TaxId: 12908]} Probab=9.15 E-value=33 Score=10.07 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=28.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30599999996421222334202322367999998 Q gi|254780896|r 203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAV 237 (351) Q Consensus 203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~i 237 (351) .|+++..+.--.|=+.+|...|++++|-++..|+- T Consensus 7 ~TPL~l~L~hw~d~~~ra~n~sv~vkkgkl~tfC~ 41 (105) T d1uhua_ 7 GTPLSLTLDHWSEIRSRAHNLSVEIKKGPWRTFCA 41 (105) T ss_dssp CCHHHHHHHTHHHHHHHHHHHTCCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC T ss_conf 89789999999998888741674202561566542 No 6 >d1mn8a_ a.61.1.6 (A:) MMLV matrix protein {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Probab=9.08 E-value=33 Score=10.05 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=28.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 30599999996421222334202322367999998 Q gi|254780896|r 203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAV 237 (351) Q Consensus 203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~i 237 (351) .|+++.-+.--+|=+.+|...|++++|-|...|+- T Consensus 4 sTPL~l~L~hw~d~~~ra~n~sv~vkk~~l~t~C~ 38 (95) T d1mn8a_ 4 TTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCS 38 (95) T ss_dssp CCHHHHHHHTHHHHHHHHHHTTCCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHC T ss_conf 66489999889998887640662131230111000 No 7 >d1wpla_ d.96.1.1 (A:) GTP cyclohydrolase I {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=8.36 E-value=36 Score=9.78 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 599999996421222334202322367999998799 Q gi|254780896|r 205 AISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSA 240 (351) Q Consensus 205 ~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~ 240 (351) .+..-+++++|||++..+...+-+-.|.+....+|- T Consensus 18 Av~~iL~aLGeDp~regL~~TP~RVaka~~el~~Gy 53 (194) T d1wpla_ 18 AYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGY 53 (194) T ss_dssp HHHHHHHHHTCCTTSGGGTTHHHHHHHHHHHHTGGG T ss_pred HHHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHC T ss_conf 999999996899995100016899999999984012 No 8 >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=8.02 E-value=16 Score=11.93 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE Q ss_conf 342023223679999987999999999998664401 Q gi|254780896|r 221 FSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRI 256 (351) Q Consensus 221 ~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v 256 (351) +..|++.+++.++.+.+++=+||.+|-.+..+.+.+ T Consensus 139 ~~~g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrI 174 (338) T d1bu8a2 139 TEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRI 174 (338) T ss_dssp HHHCCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEE T ss_pred HHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCC T ss_conf 854997100688853488888889987605654654 No 9 >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=6.69 E-value=49 Score=9.02 Aligned_cols=26 Identities=8% Similarity=-0.023 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 42122233420232236799999879 Q gi|254780896|r 214 RDNQKAFFSLNTTIIFAKLSAFAVSS 239 (351) Q Consensus 214 ~~n~~aA~~~Ginv~~~~~~af~is~ 239 (351) ..|++.|+..|++++.++-.-|.+.. T Consensus 34 vtDe~iA~~tgi~in~VRk~Ly~L~~ 59 (88) T d1q1ha_ 34 MTDEEIANQLNIKVNDVRKKLNLLEE 59 (88) T ss_dssp BCHHHHHHTTTSCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 78999999969969999999999986 No 10 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=6.68 E-value=49 Score=9.01 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=19.4 Q ss_pred HCCHHHHHHHHHHHH-----HHHHHHHHHHHHHH Q ss_conf 130599999996421-----22233420232236 Q gi|254780896|r 202 RRTAISNAWRTIRDN-----QKAFFSLNTTIIFA 230 (351) Q Consensus 202 ~rT~~G~~lrAv~~n-----~~aA~~~Ginv~~~ 230 (351) .++.+|..+|..++. ++.|+.+|++...+ T Consensus 5 ~~~~ig~~lr~~R~~~g~sq~~lA~~~gis~~~i 38 (79) T d1y9qa1 5 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAML 38 (79) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH T ss_conf 9999999999999982999999999877116489 Done!