BLAST/PSIBLAST alignment of GI: 254780896 and GI: 13473392 at iteration 1

>gi|13473392|ref|NP_104959.1| permease of ABC branched-chain amino acid transporter (high-affinity branched-chain amino acid transport) [Mesorhizobium loti MAFF303099] Length = 531
>gi|14024141|dbj|BAB50745.1| permease of ABC branched-chain amino acid transporter (high-affinity branched-chain amino acid transport) [Mesorhizobium loti MAFF303099] Length = 531

 Score =  239 bits (611), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 134/347 (38%), Positives = 203/347 (58%), Gaps = 17/347 (4%)

Query: 20  VVYPLLLFLFL---------GATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNC 70
           V+YP+L+   L         G   S K++D+ GIQILIYVM AWGL+IVVG  GLL L  
Sbjct: 173 VLYPILVVAVLSLNAWSIAGGLQGSLKWVDNFGIQILIYVMLAWGLNIVVGLAGLLDLGY 232

Query: 71  VIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMS 130
           V  YA+GAY+Y +L + YGLS W+L+P +  ++   G+++G P L+ RGDYLAI TL   
Sbjct: 233 VAFYALGAYAYALLATHYGLSFWILLPAAGCMAALWGVLLGFPVLRLRGDYLAIVTLAFG 292

Query: 131 EIFQNILIKWKPITNGKAGIYVADRLYFLG------TTVRSLIRFFRFPSSFVIYEIFMY 184
           EI + +LI W+ +TNG AGI    ++ F G      +    + +     +S   Y+IF+Y
Sbjct: 293 EIIRLVLINWREVTNGSAGISGIPKVSFFGLMTFNVSDPNYIAKVLHLATSSAYYKIFLY 352

Query: 185 YVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGM 244
           Y++LG+C L+A + + LRR  +  AW  +R+++ A  SL       KL+AFA  + F G 
Sbjct: 353 YLILGLCLLTAFVTIRLRRLPVGRAWEALREDEIACRSLGINTTTTKLTAFATGAMFGGF 412

Query: 245 AGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCGMNFY 304
           AG+FFAA +  +SP+ F F E+ I+++IV+LGGM SL  IA A  ++IG  E    ++F 
Sbjct: 413 AGSFFAARQGFVSPESFVFLESAIILAIVVLGGMGSLVGIAVAAMVMIGGTEALRELDF- 471

Query: 305 YFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
               +   D +  +    L  +A+ +V+L +    +  R P+ FL+ 
Sbjct: 472 -LKQIFGPDFTPELYRMLLFGMAMVIVMLWKPRGFVGSREPTAFLKE 517