RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane
spanning protein (branched chain amino acid) [Candidatus Liberibacter
asiaticus str. psy62]
         (351 letters)



>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway,
           structural genomics, NPPSFA; 2.70A {Thermus thermophilus
           HB8} (A:124-312)
          Length = 189

 Score = 26.8 bits (58), Expect = 4.3
 Identities = 7/74 (9%), Positives = 13/74 (17%)

Query: 190 MCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFF 249
           +  L A         A        R+  K    +               +A         
Sbjct: 109 VPTLRAHAEAVSVEFARPVTPEAAREVLKEAPGVEVVDEPEAKRYPMPLTASGKWDVEVG 168

Query: 250 AASRDRISPDMFKF 263
              +     +   F
Sbjct: 169 RIRKSLAFENGLDF 182


>2nut_A Protein transport protein SEC23A; human copii SEC23/24
           complexed with SEC22, protein transport; 2.30A {Homo
           sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
           (A:544-613,A:740-769)
          Length = 100

 Score = 26.2 bits (58), Expect = 6.4
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 14/36 (38%)

Query: 164 RSLIRF--------------FRFPSSFVIYEIFMYY 185
           R LIR               FRF  +F +Y  FM++
Sbjct: 9   RQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFH 44


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 26.3 bits (58), Expect = 7.0
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 15/35 (42%)

Query: 105 ACGMIMGLPSLK----FRGDYLAIATLIMSEIFQN 135
           +   +M + SL     +RG       + M    Q 
Sbjct: 1   SLADVMSIESLVEVVFYRG-------MTM----QV 24


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.333    0.144    0.433 

Gapped
Lambda     K      H
   0.267   0.0375    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,540,002
Number of extensions: 110782
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 21
Length of query: 351
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 262
Effective length of database: 1,947,404
Effective search space: 510219848
Effective search space used: 510219848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.9 bits)