RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane
spanning protein (branched chain amino acid) [Candidatus Liberibacter
asiaticus str. psy62]
         (351 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 74/148 (50%)

Query: 31  GATKS--QKYIDSMGIQIL-----IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVI 83
             T+   Q Y++      L     + +           SL    +N       GA + V+
Sbjct: 343 NLTQEQVQDYVNKTN-SHLPAGKQVEI-----------SL----VN-------GAKNLVV 379

Query: 84  LG---SRYGLSIWL--------------------------LIPVSAMISGACGMIMGLPS 114
            G   S YGL++ L                           +PV++            P 
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS------------P- 426

Query: 115 LKFRGDYLAIATLIMSEIFQNILIKWKP 142
             F    L  A+ ++++      + +  
Sbjct: 427 --FHSHLLVPASDLINKDLVKNNVSFNA 452



 Score = 35.3 bits (81), Expect = 0.019
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 17/70 (24%)

Query: 40   DSMGIQILIYVMFAWGLSIVVG---------SLGLLSLN---CVIAYAIGAYSYVI--LG 85
            D M I+ L+ V+F  G+++ V          + G++++N      +++  A  YV+  +G
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834

Query: 86   SRYGLSIWLL 95
             R G   WL+
Sbjct: 1835 KRTG---WLV 1841



 Score = 33.4 bits (76), Expect = 0.075
 Identities = 52/324 (16%), Positives = 90/324 (27%), Gaps = 129/324 (39%)

Query: 25  LLFLFLGATKSQKYIDSMG--IQILIYVM------FAWGLSI--VVGSL------GLLSL 68
           L+  FLG   S      +G   Q+L   +      +  G  I  +   L       L+  
Sbjct: 60  LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119

Query: 69  NCVI-AYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACG---MIMGLPSLKFRG----- 119
             +I  Y     + ++    +          SA+          ++ +    F G     
Sbjct: 120 KELIKNYI---TARIMAKRPFDK-----KSNSALFRAVGEGNAQLVAI----FGGQGNTD 167

Query: 120 DY---LAIATLIMSEIFQNILIKWKPITNGKAGIY---VADRLYFLGTTVRSLIRFFRFP 173
           DY   L        +++Q                Y   V D + F   T+  LI   R  
Sbjct: 168 DYFEELR-------DLYQ---------------TYHVLVGDLIKFSAETLSELI---RTT 202

Query: 174 SSFVIYEIFMYYVLLGMCFLSASIILWLRR------------TAISNAWRTIRDNQKAFF 221
                    ++    G+  L      WL                IS              
Sbjct: 203 LDA----EKVFT--QGLNILE-----WLENPSNTPDKDYLLSIPIS-------------C 238

Query: 222 SLNTTIIFAKLSAFAVSSAFIGMA-GAFFAASRDRISPDMFKF-----SENIIVISIVIL 275
            L   I   +L+ + V++  +G   G      R  +            S+ ++  ++ I 
Sbjct: 239 PL---IGVIQLAHYVVTAKLLGFTPGEL----RSYLK------GATGHSQGLVT-AVAIA 284

Query: 276 GGMT--SLSKIA-KATAIL--IGV 294
              +  S      KA  +L  IGV
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGV 308



 Score = 31.5 bits (71), Expect = 0.30
 Identities = 62/332 (18%), Positives = 96/332 (28%), Gaps = 146/332 (43%)

Query: 28  LFLGAT-KSQKYIDSMGIQILIYVMFA----WGLSIVVGSLGLLSLNCV-IAYAIGAYSY 81
              GAT  SQ      G+  +  V  A    W       S  +     + + + IG   Y
Sbjct: 266 YLKGATGHSQ------GL--VTAVAIAETDSWE------SFFVSVRKAITVLFFIGVRCY 311

Query: 82  VILGSRYG-LSIWLLIPVSAMI--SGACGMIMGLPS--LKFRGDYLAIATLIMSEIFQNI 136
                 Y   S+       +++  S       G+PS  L      L    +      Q+ 
Sbjct: 312 ----EAYPNTSLP-----PSILEDSLENNE--GVPSPMLSISN--LTQEQV------QDY 352

Query: 137 LIKWKPITNGKAGIYVAD--RLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYV------LL 188
           + K    TN     ++    ++        SL+       + V        V      L 
Sbjct: 353 VNK----TNS----HLPAGKQVEI------SLVNG---AKNLV--------VSGPPQSLY 387

Query: 189 GMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTT-IIFA--KLS---AF-AVSSAF 241
           G+        L LR+              KA   L+ + I F+  KL     F  V+S F
Sbjct: 388 GLN-------LTLRK-------------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427

Query: 242 ---------------IGMAGAFFAASRDRISP--------DMFKFSENIIVISIVILGGM 278
                          +      F A   +I P        D+   S +I    IV    +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISE-RIVDC--I 483

Query: 279 TSLS---KIA---KATAIL---------IGVV 295
             L    +     KAT IL         +GV+
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVL 515


>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
           N-terminal and C- terminal domain of kinase, cell
           cycle/transferase complex; HET: AP9; 2.80A {Herpesvirus
           saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
           1xo2_A* 1bu2_A
          Length = 254

 Score = 31.6 bits (71), Expect = 0.28
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL--CCGMNFYYFNSLLKFDCSF 316
           + F+  +++  +S+ IL       +  K T   IG   +     +      ++ K     
Sbjct: 64  ESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS 123

Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
               T L +I     IL            ++FL  
Sbjct: 124 CDCFTNLELINQEKDILEALKWDTEAVLATDFLIP 158


>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin,
           bioinsecticicide, pore formation, receptor recognition,
           sporulation; 2.8A {Bacillus thuringiensis}
          Length = 612

 Score = 30.4 bits (68), Expect = 0.64
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 1/102 (0%)

Query: 131 EIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGM 190
             + N L  W+   N +    V  ++  +    +++I            +   Y +L+  
Sbjct: 82  STYHNHLKTWENNPNPQNTQDVRTQIQLVHYHFQNVIPELVNSCPPNPSDCDYYNILVLS 141

Query: 191 CF-LSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAK 231
            +  +A++ L +   A+        + Q  +     T I   
Sbjct: 142 SYAQAANLHLTVLNQAVKFEAYLKNNRQFDYLEPLPTAIDYY 183


>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
           ATP- binding, cell division, disease mutation, kinase,
           nucleotide-binding; 3.00A {Homo sapiens}
          Length = 306

 Score = 30.1 bits (67), Expect = 0.74
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVV--ELCCGMNFYYFNSLLKFDCSF 316
           +  +  E +  +++  L    S     KA   L+G V   L   +      ++ K     
Sbjct: 83  EEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYT 142

Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
           +   +   +    +++L +    L      +FL  
Sbjct: 143 DHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAF 177


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.0 bits (66), Expect = 0.83
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 5/19 (26%)

Query: 114 SLKFRGD----YLAI-ATL 127
           SLK   D     LAI AT+
Sbjct: 28  SLKLYADDSAPALAIKATM 46


>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
           chromosomal rearrangement, ATP-binding, transferase,
           polymorphism, cell division; 2.30A {Homo sapiens} PDB:
           2w99_A 2w9f_A 2w9z_A
          Length = 271

 Score = 27.8 bits (61), Expect = 3.4
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL--CCGMNFYYFNSLLKFDCSF 316
           +  K  E +  +++  L    SL  + K+   L+G   +     M      +  K     
Sbjct: 69  EEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYT 128

Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
           +       ++ + L+++ +    L   TP +F+E 
Sbjct: 129 DNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 163


>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
           ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
           protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
           a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
           1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
           2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
           1vyw_B* 2bkz_B* ...
          Length = 260

 Score = 27.4 bits (60), Expect = 5.2
 Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 2/95 (2%)

Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL--CCGMNFYYFNSLLKFDCSF 316
           + +K     + +++  +    S   + +    L+G   +         Y   + +F    
Sbjct: 51  EEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT 110

Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
           +  +T   V+ +  ++L      L   T + FL +
Sbjct: 111 DDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 145


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.144    0.433 

Gapped
Lambda     K      H
   0.267   0.0497    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,933,586
Number of extensions: 133894
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 57
Length of query: 351
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 258
Effective length of database: 3,438,538
Effective search space: 887142804
Effective search space used: 887142804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.3 bits)