254780897
trigger factor
GeneID in NCBI database: | 8209917 | Locus tag: | CLIBASIA_03970 |
Protein GI in NCBI database: | 254780897 | Protein Accession: | YP_003065310.1 |
Gene range: | +(872690, 874111) | Protein Length: | 473aa |
Gene description: | trigger factor | ||
COG prediction: | [O] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) | ||
KEGG prediction: | tig; trigger factor (EC:5.2.1.8); K03545 trigger factor | ||
SEED prediction: | Cell division trigger factor (EC 5.2.1.8) | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Bacterial Cell Division | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | |||
315122685 | 459 | trigger factor [Candidatus Liberibacter solanacearum CL | 1 | 0.0 | |
86357469 | 494 | trigger factor [Rhizobium etli CFN 42] Length = 494 | 1 | 2e-99 | |
241204433 | 494 | trigger factor [Rhizobium leguminosarum bv. trifolii WS | 1 | 5e-99 | |
327189115 | 495 | chaperone trigger factor protein [Rhizobium etli CNPAF5 | 1 | 6e-99 | |
218663471 | 494 | trigger factor [Rhizobium etli IE4771] Length = 494 | 1 | 1e-98 | |
116251822 | 494 | trigger factor [Rhizobium leguminosarum bv. viciae 3841 | 1 | 1e-98 | |
190891531 | 495 | chaperone trigger factor protein [Rhizobium etli CIAT 6 | 1 | 2e-98 | |
209549106 | 495 | trigger factor [Rhizobium leguminosarum bv. trifolii WS | 1 | 1e-97 | |
222085803 | 495 | trigger factor protein [Agrobacterium radiobacter K84] | 1 | 2e-97 | |
227821953 | 491 | trigger factor [Sinorhizobium fredii NGR234] Length = 4 | 1 | 4e-97 |
>gi|315122685|ref|YP_004063174.1| trigger factor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 459 | Back alignment and organism information |
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Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/454 (70%), Positives = 395/454 (87%), Gaps = 1/454 (0%) Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60 MQ+IEKFSEGL RELDV+IPSN+LT+SFN+R+EDIRS A+IKGFRPGKVP SHIKS+YGK Sbjct: 1 MQIIEKFSEGLNRELDVVIPSNQLTESFNKRLEDIRSTAHIKGFRPGKVPFSHIKSIYGK 60 Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEG-ESDITSGLIEGTVDLKLRLSYD 119 SILSE ID++IK+ VPE+LSKRDERAAMRP ITINEG E + TS L++G++DLKL LSYD Sbjct: 61 SILSEIIDDLIKKTVPEVLSKRDERAAMRPKITINEGDEKETTSRLMDGSIDLKLGLSYD 120 Query: 120 ILPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTV 179 ILP++EI+ FDDLQ+T+D+CE+D+KEID+ M++IA+ N+AFEVKE E+ IGD++TVDYT+ Sbjct: 121 ILPKVEINIFDDLQITRDVCEIDDKEIDKHMSDIAEKNIAFEVKEKEAAIGDRITVDYTL 180 Query: 180 SVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKK 239 SVD+V+L+D SK+N+QFIVGS +LF ETT LV LK G+ KEIER FPEDHSIKDLAGKK Sbjct: 181 SVDDVVLKDHSKENIQFIVGSEELFPETTNTLVDLKAGEHKEIERVFPEDHSIKDLAGKK 240 Query: 240 VRLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILD 299 V+LNFSIKEV SPLP +VN+DLA+RLGFESE+ MR S +IK+ SE VRQK+KRQ++D Sbjct: 241 VKLNFSIKEVSSPLPAIVNDDLAIRLGFESEAIMRDFLSNQIKKQSEVAVRQKLKRQVID 300 Query: 300 YISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVL 359 Y++ KY FD+P+SL++NEYNGILQ++R EM+ + QN DSI EEDLQ Y +LA+RRV Sbjct: 301 YLNEKYIFDIPQSLLDNEYNGILQQIRSEMNPSGNDMQNNDSIKEEDLQDYRLLAERRVR 360 Query: 360 TGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFED 419 GIVLGTIGEKN+IEVTEEE++SALYQQL RFPG EKKMLD+FQ PNA+AELRAPIFE+ Sbjct: 361 AGIVLGTIGEKNSIEVTEEEIKSALYQQLSRFPGQEKKMLDYFQNSPNAIAELRAPIFEE 420 Query: 420 KVIDHILKSVQIVDRKVTFDQLFDNSSESSPEKL 453 KVID+ILK+ Q+VD+KVT +QLF S ESS +++ Sbjct: 421 KVIDYILKNAQVVDKKVTIEQLFSYSVESSQDEV 454 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86357469|ref|YP_469361.1| trigger factor [Rhizobium etli CFN 42] Length = 494 | Back alignment and organism information |
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>gi|241204433|ref|YP_002975529.1| trigger factor [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 494 | Back alignment and organism information |
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>gi|327189115|gb|EGE56300.1| chaperone trigger factor protein [Rhizobium etli CNPAF512] Length = 495 | Back alignment and organism information |
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>gi|218663471|ref|ZP_03519401.1| trigger factor [Rhizobium etli IE4771] Length = 494 | Back alignment and organism information |
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>gi|116251822|ref|YP_767660.1| trigger factor [Rhizobium leguminosarum bv. viciae 3841] Length = 494 | Back alignment and organism information |
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>gi|190891531|ref|YP_001978073.1| chaperone trigger factor protein [Rhizobium etli CIAT 652] Length = 495 | Back alignment and organism information |
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>gi|209549106|ref|YP_002281023.1| trigger factor [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 495 | Back alignment and organism information |
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>gi|222085803|ref|YP_002544333.1| trigger factor protein [Agrobacterium radiobacter K84] Length = 495 | Back alignment and organism information |
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>gi|227821953|ref|YP_002825924.1| trigger factor [Sinorhizobium fredii NGR234] Length = 491 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
PRK01490 | 435 | PRK01490, tig, trigger factor; Provisional | 1e-80 | |
TIGR00115 | 408 | TIGR00115, tig, trigger factor | 3e-71 | |
COG0544 | 441 | COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isome | 2e-61 | |
pfam05697 | 144 | pfam05697, Trigger_N, Bacterial trigger factor protein | 2e-24 | |
pfam05698 | 162 | pfam05698, Trigger_C, Bacterial trigger factor protein | 2e-18 | |
pfam00254 | 95 | pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans | 0.004 |
>gnl|CDD|179299 PRK01490, tig, trigger factor; Provisional | Back alignment and domain information |
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>gnl|CDD|161716 TIGR00115, tig, trigger factor | Back alignment and domain information |
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>gnl|CDD|30890 COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|147704 pfam05697, Trigger_N, Bacterial trigger factor protein (TF) | Back alignment and domain information |
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>gnl|CDD|147705 pfam05698, Trigger_C, Bacterial trigger factor protein (TF) C-terminus | Back alignment and domain information |
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>gnl|CDD|144003 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
PRK01490 | 435 | tig trigger factor; Provisional | 100.0 | |
COG0544 | 441 | Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trig | 100.0 | |
TIGR00115 | 475 | tig trigger factor; InterPro: IPR005215 The trigger fac | 100.0 | |
pfam05697 | 144 | Trigger_N Bacterial trigger factor protein (TF). In the | 99.96 | |
pfam05698 | 162 | Trigger_C Bacterial trigger factor protein (TF) C-termi | 99.89 | |
pfam00254 | 95 | FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase. | 98.39 | |
PRK10737 | 196 | FKBP-type peptidyl-prolyl cis-trans isomerase; Provisio | 98.27 | |
COG1047 | 174 | SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [ | 98.14 | |
COG0545 | 205 | FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [ | 97.5 | |
KOG0552 | 226 | consensus | 97.47 | |
KOG0549 | 188 | consensus | 97.26 | |
PRK10902 | 270 | FKBP-type peptidyl-prolyl cis-trans isomerase; Provisio | 97.01 | |
TIGR03516 | 177 | ppisom_GldI peptidyl-prolyl isomerase, gliding motility | 96.97 | |
KOG0544 | 108 | consensus | 96.95 | |
PRK11570 | 206 | peptidyl-prolyl cis-trans isomerase; Provisional | 96.77 | |
KOG0543 | 397 | consensus | 92.49 | |
PRK01885 | 159 | greB transcription elongation factor GreB; Reviewed | 92.07 | |
TIGR01462 | 155 | greA transcription elongation factor GreA; InterPro: IP | 91.45 | |
PRK00226 | 157 | greA transcription elongation factor GreA; Reviewed | 90.92 | |
pfam09312 | 118 | SurA_N SurA N-terminal domain. This domain is found at | 97.09 | |
PRK00059 | 336 | prsA peptidylprolyl isomerase; Provisional | 96.91 | |
PRK10770 | 428 | peptidyl-prolyl cis-trans isomerase SurA; Provisional | 96.81 | |
PRK12450 | 309 | foldase protein PrsA; Reviewed | 96.53 | |
PRK03095 | 287 | prsA peptidylprolyl isomerase; Reviewed | 96.08 | |
PRK01326 | 310 | prsA foldase protein PrsA; Reviewed | 95.84 | |
PRK02998 | 283 | prsA peptidylprolyl isomerase; Reviewed | 95.3 | |
PRK04405 | 298 | prsA peptidylprolyl isomerase; Provisional | 95.02 | |
PRK10788 | 622 | peptidyl-prolyl cis-trans isomerase (rotamase D); Provi | 93.97 | |
PRK00059 | 336 | prsA peptidylprolyl isomerase; Provisional | 95.4 |
>PRK01490 tig trigger factor; Provisional | Back alignment and domain information |
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>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>TIGR00115 tig trigger factor; InterPro: IPR005215 The trigger factor is found in several prokaryotes, and is involved in protein export | Back alignment and domain information |
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>pfam05697 Trigger_N Bacterial trigger factor protein (TF) | Back alignment and domain information |
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>pfam05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus | Back alignment and domain information |
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>pfam00254 FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase | Back alignment and domain information |
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>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional | Back alignment and domain information |
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>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>KOG0552 consensus | Back alignment and domain information |
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>KOG0549 consensus | Back alignment and domain information |
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>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional | Back alignment and domain information |
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>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated | Back alignment and domain information |
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>KOG0544 consensus | Back alignment and domain information |
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>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional | Back alignment and domain information |
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>KOG0543 consensus | Back alignment and domain information |
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>PRK01885 greB transcription elongation factor GreB; Reviewed | Back alignment and domain information |
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>TIGR01462 greA transcription elongation factor GreA; InterPro: IPR006359 Bacterial GreA and GreB IPR006358 from INTERPRO promote transcription elongation by stimulating an endogenous, endonucleolytic transcript cleavage activity of the RNA polymerase (RNAP) , allowing RNA transcription to continue past template-encoded arresting sites | Back alignment and domain information |
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>PRK00226 greA transcription elongation factor GreA; Reviewed | Back alignment and domain information |
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>pfam09312 SurA_N SurA N-terminal domain | Back alignment and domain information |
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>PRK00059 prsA peptidylprolyl isomerase; Provisional | Back alignment and domain information |
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>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional | Back alignment and domain information |
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>PRK12450 foldase protein PrsA; Reviewed | Back alignment and domain information |
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>PRK03095 prsA peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
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>PRK01326 prsA foldase protein PrsA; Reviewed | Back alignment and domain information |
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>PRK02998 prsA peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
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>PRK04405 prsA peptidylprolyl isomerase; Provisional | Back alignment and domain information |
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>PRK10788 peptidyl-prolyl cis-trans isomerase (rotamase D); Provisional | Back alignment and domain information |
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>PRK00059 prsA peptidylprolyl isomerase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
1w26_A | 432 | Trigger Factor In Complex With The Ribosome Forms A | 3e-62 | |
3gty_X | 433 | Promiscuous Substrate Recognition In Folding And As | 1e-17 | |
3gu0_A | 412 | Promiscuous Substrate Recognition In Folding And As | 1e-16 | |
1t11_A | 392 | Trigger Factor Length = 392 | 5e-53 | |
1w2b_5 | 144 | Trigger Factor Ribosome Binding Domain In Complex W | 3e-29 | |
1p9y_A | 121 | Ribosome Binding Of E. Coli Trigger Factor Mutant F | 1e-26 | |
1oms_A | 121 | Structure Determination By Mad: E.Coli Trigger Fact | 2e-26 | |
2d3o_1 | 112 | Structure Of Ribosome Binding Domain Of The Trigger | 4e-17 | |
2aar_7 | 113 | Structure Of Trigger Factor Binding Domain In Biolo | 6e-17 | |
2nsb_A | 109 | Structures Of And Interactions Between Domains Of T | 4e-07 | |
1l1p_A | 106 | Solution Structure Of The Ppiase Domain From E. Col | 3e-04 |
>gi|55670527|pdb|1W26|A Chain A, Trigger Factor In Complex With The Ribosome Forms A Molecular Cradle For Nascent Proteins Length = 432 | Back alignment and structure |
Score = 244 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 89/447 (19%), Positives = 200/447 (44%), Gaps = 18/447 (4%) Query: 2 QVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKS 61 QV + ++GL R + + I ++ + + + ++ K I GFR GKVP + + YG S Sbjct: 2 QVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPXNIVAQRYGAS 61 Query: 62 ILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDIL 121 + + + ++ + + K A P+ G + D + +++ Sbjct: 62 VRQDVLGDLXSRNFIDAIIKEKINPAGAPT---------YVPGEYKLGEDFTYSVEFEVY 112 Query: 122 PQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVSV 181 P++E+ + ++V + I EV + ++D + + K ++ K+ E D+VT+D+T SV Sbjct: 113 PEVELQGLEAIEVEKPIVEVTDADVDGXLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSV 172 Query: 182 DNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVR 241 D E + G + + G K G++ I+ FPE++ ++L GK + Sbjct: 173 DGEEFEGGKASDFVLAXGQGRXIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAK 232 Query: 242 LNFSIKEVFSPLPVVVNNDLAVRLGFES--ESAMRGLCSQKIKQHSEFLVRQKVKRQILD 299 ++K+V + + R G E +R + ++ + +R +VK Q ++ Sbjct: 233 FAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNXERELKSAIRNRVKSQAIE 292 Query: 300 YISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVL 359 + DVP +L+++E + + ++ N E + + AKRRV+ Sbjct: 293 GLVKANDIDVPAALIDSEIDVLRRQAAQRFGG------NEKQALELPRELFEEQAKRRVV 346 Query: 360 TGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFED 419 G++LG + N ++ EE ++ + + + K++++ + K R E+ Sbjct: 347 VGLLLGEVIRTNELKADEERVKGLIEEXASAY-EDPKEVIEFYSKNKELXDNXRNVALEE 405 Query: 420 KVIDHILKSVQIVDRKVTFDQLFDNSS 446 + ++ +L ++ +++ TF++L + + Sbjct: 406 QAVEAVLAKAKVTEKETTFNELXNQQA 432 |
>gi|281500761|pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 433 | Back alignment and structure |
>gi|281500763|pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly Activities Of The Trigger Factor Chaperone Length = 412 | Back alignment and structure |
>gi|55669803|pdb|1T11|A Chain A, Trigger Factor Length = 392 | Back alignment and structure |
>gi|55670534|pdb|1W2B|5 Chain 5, Trigger Factor Ribosome Binding Domain In Complex With 50s Length = 144 | Back alignment and structure |
>gi|40889296|pdb|1P9Y|A Chain A, Ribosome Binding Of E. Coli Trigger Factor Mutant F44l. Length = 121 | Back alignment and structure |
>gi|40889238|pdb|1OMS|A Chain A, Structure Determination By Mad: E.Coli Trigger Factor Binding At The Ribosomal Exit Tunnel. Length = 121 | Back alignment and structure |
>gi|83754924|pdb|2D3O|1 Chain 1, Structure Of Ribosome Binding Domain Of The Trigger Factor On The 50s Ribosomal Subunit From D. Radiodurans Length = 112 | Back alignment and structure |
>gi|75766111|pdb|2AAR|7 Chain 7, Structure Of Trigger Factor Binding Domain In Biologically Homologous Complex With Eubacterial Ribosome Length = 113 | Back alignment and structure |
>gi|145579894|pdb|2NSB|A Chain A, Structures Of And Interactions Between Domains Of Trigger Factor From Themotoga Maritima Length = 109 | Back alignment and structure |
>gi|159162627|pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli Trigger Factor Length = 106 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
1w26_A | 432 | Trigger factor, TF; chaperone, protein folding, ribosom | 1e-52 | |
3gty_X | 433 | Trigger factor, TF; chaperone-client complex, cell cycl | 2e-43 | |
1t11_A | 392 | Trigger factor, TF; helix-turn-helix, four-helix-bundle | 2e-44 | |
1zxj_A | 218 | MPN555, hypothetical protein Mg377 homolog; mostly alph | 1e-20 | |
2nsa_A | 170 | Trigger factor, TF; chaperone; 1.70A {Thermotoga mariti | 2e-19 | |
1p9y_A | 121 | Trigger factor, TF; alpha-beta protein, isomerase; 2.15 | 6e-17 | |
2nsc_A | 109 | Trigger factor, TF; chaperone; 2.20A {Thermotoga mariti | 2e-12 | |
2d3o_1 | 112 | Trigger factor, TF; ribosome, nascent chain, protein fo | 6e-12 | |
1hxv_A | 113 | Trigger factor; FKBP fold, ppiase, chaperone; NMR {Myco | 1e-12 |
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Length = 432 | Back alignment and structure |
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Score = 202 bits (515), Expect = 1e-52 Identities = 91/445 (20%), Positives = 211/445 (47%), Gaps = 18/445 (4%) Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60 MQV + ++GL R + + I ++ + + + ++ K I GFR GKVP++ + YG Sbjct: 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGA 60 Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120 S+ + + +++ + + K A P+ E + D + +++ Sbjct: 61 SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGE---------DFTYSVEFEV 111 Query: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180 P++E+ + ++V + I EV + ++D + + K ++ K+ E D+VT+D+T S Sbjct: 112 YPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGS 171 Query: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240 VD E + +G + + + G K G++ I+ FPE++ ++L GK Sbjct: 172 VDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAA 231 Query: 241 RLNFSIKEVFSPLPVVVNNDLAVRLGFE--SESAMRGLCSQKIKQHSEFLVRQKVKRQIL 298 + ++K+V + + R G E S +R + +++ + +R +VK Q + Sbjct: 232 KFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAI 291 Query: 299 DYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRV 358 + + DVP +L+++E + + ++ +++ E + + AKRRV Sbjct: 292 EGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQAL------ELPRELFEEQAKRRV 345 Query: 359 LTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFE 418 + G++LG + N ++ EE ++ L +++ K++++ + K + +R E Sbjct: 346 VVGLLLGEVIRTNELKADEERVK-GLIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALE 404 Query: 419 DKVIDHILKSVQIVDRKVTFDQLFD 443 ++ ++ +L ++ +++ TF++L + Sbjct: 405 EQAVEAVLAKAKVTEKETTFNELMN 429 |
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A Length = 433 | Back alignment and structure |
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>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Length = 392 | Back alignment and structure |
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>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} Length = 218 | Back alignment and structure |
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>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} Length = 170 | Back alignment and structure |
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>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* Length = 121 | Back alignment and structure |
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>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Length = 109 | Back alignment and structure |
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>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Length = 112 | Back alignment and structure |
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>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Length = 113 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
1w26_A | 432 | Trigger factor, TF; chaperone, protein folding, ribosom | 100.0 | |
3gty_X | 433 | Trigger factor, TF; chaperone-client complex, cell cycl | 100.0 | |
1t11_A | 392 | Trigger factor, TF; helix-turn-helix, four-helix-bundle | 100.0 | |
1zxj_A | 218 | MPN555, hypothetical protein Mg377 homolog; mostly alph | 99.95 | |
1p9y_A | 121 | Trigger factor, TF; alpha-beta protein, isomerase; 2.15 | 99.92 | |
2d3o_1 | 112 | Trigger factor, TF; ribosome, nascent chain, protein fo | 99.81 | |
2nsc_A | 109 | Trigger factor, TF; chaperone; 2.20A {Thermotoga mariti | 99.76 | |
2nsa_A | 170 | Trigger factor, TF; chaperone; 1.70A {Thermotoga mariti | 99.87 | |
1hxv_A | 113 | Trigger factor; FKBP fold, ppiase, chaperone; NMR {Myco | 99.79 | |
3cgm_A | 158 | SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone fu | 98.63 | |
2kfw_A | 196 | FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; pro | 98.49 | |
2k8i_A | 171 | SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chap | 98.46 | |
1ix5_A | 151 | FKBP; ppiase, isomerase; NMR {Methanothermococcusthermo | 98.35 | |
2pbc_A | 102 | FK506-binding protein 2; endoplasmic reticulum, isomera | 98.09 | |
1pbk_A | 116 | FKBP25, EC 5.2.1.8; FKBP12 homologous domain of HFKBP25 | 97.75 | |
1jvw_A | 167 | Macrophage infectivity potentiator; chagas disease, X-R | 97.65 | |
2jwx_A | 157 | FKBP38NTD, FK506-binding protein 8 variant; apoptosis, | 97.64 | |
1yat_A | 113 | FK506 binding protein; HET: FK5; 2.50A {Saccharomyces c | 97.64 | |
1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, | 97.64 | |
1q1c_A | 280 | FK506-binding protein 4; rotamase, TPR repeat, nuclear | 97.63 | |
2d9f_A | 135 | FK506-binding protein 8 variant; FKBP, rapamycin, struc | 97.59 | |
2awg_A | 118 | 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 | 97.59 | |
2ke0_A | 117 | Peptidyl-prolyl CIS-trans isomerase; bupsa.00130.A, FK5 | 97.57 | |
2vn1_A | 129 | 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repea | 97.56 | |
1fd9_A | 213 | Protein (macrophage infectivity potentiator protein); F | 97.55 | |
1q6h_A | 224 | FKBP-type peptidyl-prolyl CIS-trans isomerase FKPA; cha | 97.53 | |
3jxv_A | 356 | 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain | 97.51 | |
2ppn_A | 107 | FK506-binding protein 1A; high resolution protein struc | 97.48 | |
2f4e_A | 180 | ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.3 | 97.4 | |
1r9h_A | 135 | FKB-6, FK506 binding protein family; structural genomic | 97.17 | |
3b7x_A | 134 | FK506-binding protein 6; isomerase, repeat, rotamase, T | 97.08 | |
1q1c_A | 280 | FK506-binding protein 4; rotamase, TPR repeat, nuclear | 97.02 | |
3jxv_A | 356 | 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain | 96.97 | |
2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signa | 96.82 | |
1u79_A | 129 | FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP1 | 96.82 | |
1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo | 96.38 | |
1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, | 96.11 | |
2p4v_A | 158 | Transcription elongation factor GREB; transcript cleava | 90.53 | |
1m5y_A | 408 | SurviVal protein, surviVal protein SURA; surviVal prote | 94.95 |
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=656.80 Aligned_cols=430 Identities=21% Similarity=0.424 Sum_probs=409.3 Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 91189972797699999854899999999999998750738985897048899998610899999999999999999998 Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS 80 (473) Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~ 80 (473) |+|++++.++|+++|+|+||+++|+..++++++.++++++||||||||||++||+++||++|+.++++++++.++.+++. T Consensus 1 M~v~ve~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGkvP~~vi~k~yg~~i~~e~~~~lv~~~~~~~i~ 80 (432) T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAII 80 (432) T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTTCGGGCCSSSCHHHHHHHHCTTTHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97279977886799999998999999999999998661877998999988999999975999999999999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC Q ss_conf 72995422874122222233321101378820578876227877621113564310012111157899999976431000 Q gi|254780897|r 81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAF 160 (473) Q Consensus 81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l~~y~~i~i~~~~~~vtd~~Id~~i~~l~~~~~~~ 160 (473) ++++.|+|+|.+.... +..+.+|+|+++|+++|+|+|++|++++++++.++||+++|+.+|+++++++|+| T Consensus 81 e~~l~~~~~p~~~~~~---------~~~~~~~~f~~~~~v~Pe~~l~~~~~i~v~~~~~~vtde~vd~~i~~l~~~~~~~ 151 (432) T 1w26_A 81 KEKINPAGAPTYVPGE---------YKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATW 151 (432) T ss_dssp HSCCCEEEEEEEEECC---------CCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHHHHHHHHHHHHHHTCEE T ss_pred HCCCCCCCCCCCCCCC---------CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC T ss_conf 7699847786212342---------1125673489999963553335556437876214568899999999997641221 Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE Q ss_conf 02343322111134445666426534666544203651786656310342068878875433234444444100038730 Q gi|254780897|r 161 EVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240 (473) Q Consensus 161 ~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v 240 (473) .+++++++.||+|+|||+++++|++++|++++++.+.+|++.++|||.++|+|||+||+++|+++||+||+.+.++|+++ T Consensus 152 ~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~l~G~k~Gd~~~~~~~~p~d~~~~~~agk~~ 231 (432) T 1w26_A 152 KEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAA 231 (432) T ss_dssp CCCSSCCCTTCEEEECEEEESSSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTTSSCEE T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCHHHCCCCH T ss_conf 33334567899899999997668646677766559994798766306888753247876999875686423013225331 Q ss_pred EEEEEHHHHHCCCCCCCCHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 46761011002467776747887502--3655789999998878999977777669999999986400347999999997 Q gi|254780897|r 241 RLNFSIKEVFSPLPVVVNNDLAVRLG--FESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEY 318 (473) Q Consensus 241 ~f~v~v~~I~~~~~pel~def~k~~~--~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~ 318 (473) .|.|+|++|+++++|++||+|++++| .+|+++||+.|+++++.+++..+.+.++++++++|++.++|++|++++++++ T Consensus 232 ~f~v~v~~i~~~~~pel~def~k~~~~e~~t~eelk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lp~~~~~~~~ 311 (432) T 1w26_A 232 KFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEI 311 (432) T ss_dssp EEEEECCEECCEECCCCSHHHHTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_pred HHEEEEEEECCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 21123223204558864489998728520269999999999999999999999999999999987466668889999999 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 76789999997534864001100013456778999999999999999998643874289999999999998639998999 Q gi|254780897|r 319 NGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKM 398 (473) Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~ 398 (473) ..++.++..++..++.. +.+.+++.+++.|++++||+||+++||+.++|+||++||++++.+++++|+ .+.++ T Consensus 312 ~~~~~~~~~~~~~~~~~------~~e~~~e~~~~~a~~~vk~~lil~~Ia~~e~I~vt~eei~~~i~~~a~~~~-~~~~~ 384 (432) T 1w26_A 312 DVLRRQAAQRFGGNEKQ------ALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYE-DPKEV 384 (432) T ss_dssp HHHHHHHHTTTTCCTTS------STTSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSS-CHHHH T ss_pred HHHHHHHHHHHCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CHHHH T ss_conf 99999999875021100------057799999999999999999999999993898899999999999998769-98999 Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECHHHHCCCCC Q ss_conf 999870999899999999999999999885356655314888406765 Q gi|254780897|r 399 LDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKVTFDQLFDNSS 446 (473) Q Consensus 399 ~~~~~~~~~~~~~i~~~ile~Kv~d~l~~~a~i~ek~~~~~el~~~~~ 446 (473) +++|.++++.+..+++.++++|+++||+++|+++++++|++||++..+ T Consensus 385 ~~~~~~~~~~~~~i~~~i~~~Kv~~~l~e~a~i~ek~~s~~e~~~~~a 432 (432) T 1w26_A 385 IEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA 432 (432) T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTSBCCEEECCHHHHTCCCC T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHCCCC T ss_conf 999986989999999999999999999985976654367999716789 |
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A | Back alignment and structure |
---|
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A | Back alignment and structure |
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>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} | Back alignment and structure |
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>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* | Back alignment and structure |
---|
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 | Back alignment and structure |
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>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A | Back alignment and structure |
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>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} | Back alignment and structure |
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>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 | Back alignment and structure |
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>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* | Back alignment and structure |
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>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} | Back alignment and structure |
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>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} | Back alignment and structure |
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>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 | Back alignment and structure |
---|
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
---|
>1pbk_A FKBP25, EC 5.2.1.8; FKBP12 homologous domain of HFKBP25, isomerase; HET: RAP; 2.50A {Homo sapiens} SCOP: d.26.1.1 | Back alignment and structure |
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>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 | Back alignment and structure |
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>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} | Back alignment and structure |
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>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 | Back alignment and structure |
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>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A | Back alignment and structure |
---|
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A | Back alignment and structure |
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>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
---|
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A | Back alignment and structure |
---|
>2ke0_A Peptidyl-prolyl CIS-trans isomerase; bupsa.00130.A, FK506 binding protein FKBP, structural genomics; NMR {Burkholderia pseudomallei} PDB: 2ko7_A* | Back alignment and structure |
---|
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* | Back alignment and structure |
---|
>1fd9_A Protein (macrophage infectivity potentiator protein); FKBP domain, long alpha helix, dimerisation VIA helical interactions, isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* | Back alignment and structure |
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>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKPA; chaperone, peptidyl-prolyl isomerase, heat shock protein, periplasm, FKBP family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A | Back alignment and structure |
---|
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A | Back alignment and structure |
---|
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... | Back alignment and structure |
---|
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} | Back alignment and structure |
---|
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 | Back alignment and structure |
---|
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
---|
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A | Back alignment and structure |
---|
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A | Back alignment and structure |
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>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
---|
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A | Back alignment and structure |
---|
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
---|
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A | Back alignment and structure |
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>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli} | Back alignment and structure |
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>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
473 | trigger factor [Candidatus Liberibacter asiaticus str. | |||
d1w26a1 | 185 | a.223.1.1 (A:248-432) Trigger factor, C-terminal domain | 2e-19 | |
d1t11a3 | 113 | d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibr | 9e-16 | |
d1l1pa_ | 106 | d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia | 1e-10 | |
d1hxva_ | 85 | d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma | 4e-09 | |
d1t11a2 | 129 | d.241.2.1 (A:1-129) Trigger factor ribosome-binding dom | 2e-15 | |
d1p9ya_ | 117 | d.241.2.1 (A:) Trigger factor ribosome-binding domain { | 3e-15 | |
d1t11a1 | 129 | a.223.1.1 (A:248-376) Trigger factor, C-terminal domain | 4e-11 |
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 185 | Back information, alignment and structure |
---|
class: All alpha proteins fold: Triger factor/SurA peptide-binding domain-like superfamily: Triger factor/SurA peptide-binding domain-like family: TF C-terminus domain: Trigger factor, C-terminal domain species: Escherichia coli [TaxId: 562] Score = 90.9 bits (225), Expect = 2e-19 Identities = 34/187 (18%), Positives = 90/187 (48%), Gaps = 9/187 (4%) Query: 257 VNNDLAVRLGFESES--AMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLV 314 + + R G E S +R + +++ + +R +VK Q ++ + DVP +L+ Sbjct: 1 LTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALI 60 Query: 315 ENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIE 374 ++E + + ++ +++ E + + AKRRV+ G++LG + N ++ Sbjct: 61 DSEIDVLRRQAAQRFGGNEKQA------LELPRELFEEQAKRRVVVGLLLGEVIRTNELK 114 Query: 375 VTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDR 434 EE ++ +++ K++++ + K + +R E++ ++ +L ++ ++ Sbjct: 115 ADEERVKGL-IEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEK 173 Query: 435 KVTFDQL 441 + TF++L Sbjct: 174 ETTFNEL 180 |
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Length = 113 | Back information, alignment and structure |
---|
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
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>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85 | Back information, alignment and structure |
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>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]} Length = 129 | Back information, alignment and structure |
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>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} Length = 117 | Back information, alignment and structure |
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>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]} Length = 129 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
d1w26a1 | 185 | Trigger factor, C-terminal domain {Escherichia coli [Ta | 99.96 | |
d1t11a2 | 129 | Trigger factor ribosome-binding domain {Vibrio cholerae | 99.94 | |
d1p9ya_ | 117 | Trigger factor ribosome-binding domain {Escherichia col | 99.92 | |
d1t11a3 | 113 | Trigger factor PPIase domain {Vibrio cholerae [TaxId: 6 | 99.87 | |
d1l1pa_ | 106 | Trigger factor PPIase domain {Escherichia coli [TaxId: | 99.82 | |
d1hxva_ | 85 | Trigger factor PPIase domain {Mycoplasma genitalium [Ta | 99.56 | |
d1ix5a_ | 151 | Archaeal FKBP {Archaeon Methanococcus thermolithotrophi | 98.25 | |
d1pbka_ | 116 | FKBP25 {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
d1jvwa_ | 160 | Macrophage infectivity potentiator protein (MIP) {Trypa | 97.64 | |
d1q1ca1 | 120 | FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId | 97.63 | |
d1yata_ | 113 | Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces ce | 97.6 | |
d1kt1a2 | 111 | FKBP51, N-terminal domains {Monkey (Saimiri boliviensis | 97.56 | |
d1fd9a_ | 204 | Macrophage infectivity potentiator protein (MIP) {Legio | 97.54 | |
d2ppna1 | 107 | FK-506 binding protein (FKBP12), an immunophilin {Human | 97.54 | |
d1q6ha_ | 210 | Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia c | 97.41 | |
d1kt1a3 | 115 | FKBP51, N-terminal domains {Monkey (Saimiri boliviensis | 97.34 | |
d1r9ha_ | 118 | FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId | 97.29 | |
d1q1ca2 | 117 | FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId | 97.14 | |
d1u79a_ | 125 | FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702 | 96.7 | |
d1t11a1 | 129 | Trigger factor, C-terminal domain {Vibrio cholerae [Tax | 99.69 | |
d1m5ya1 | 173 | Porin chaperone SurA, peptide-binding domain {Escherich | 97.33 | |
d1m5ya1 | 173 | Porin chaperone SurA, peptide-binding domain {Escherich | 93.4 |
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: Triger factor/SurA peptide-binding domain-like superfamily: Triger factor/SurA peptide-binding domain-like family: TF C-terminus domain: Trigger factor, C-terminal domain species: Escherichia coli [TaxId: 562] Probab=99.96 E-value=6.2e-27 Score=230.90 Aligned_cols=182 Identities=19% Similarity=0.423 Sum_probs=170.2 Q ss_pred CCHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 674788750236--557899999988789999777776699999999864003479999999977678999999753486 Q gi|254780897|r 257 VNNDLAVRLGFE--SESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQ 334 (473) Q Consensus 257 l~def~k~~~~~--t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~ 334 (473) |||+||+.+|++ |+++||+.|+++|..++...+...++++++++|++.++|++|++||+++++++++++..++..++. T Consensus 1 L~dEFak~~g~e~~tleelk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~elP~slv~~e~~~~~~~~~~~~~~~~~ 80 (185) T d1w26a1 1 LTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEK 80 (185) T ss_dssp CSHHHHTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHTTTTCCTT T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 98899987388779999999999999999999999999999999999975786797899999999999998774001220 Q ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH Q ss_conf 40011000134567789999999999999999986438742899999999999986399989999998709998999999 Q gi|254780897|r 335 KSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRA 414 (473) Q Consensus 335 ~~~~~~~~~e~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 414 (473) . ..+.++..+++.|+++||++||+++||+.++|+||++||..++.+++.+|+ .+.+.+++|+++++++..+++ T Consensus 81 ~------~~e~~~~~~~~~A~~~vk~~lil~~Ia~~e~i~vt~eei~~~i~~~a~~~~-~~~~~~~~~~~~~~~~~~i~~ 153 (185) T d1w26a1 81 Q------ALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYE-DPKEVIEFYSKNKELMDNMRN 153 (185) T ss_dssp S------STTSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSS-CHHHHHHHHHHCHHHHHHHHH T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHCHHHHHHHHH T ss_conf 0------024458999999999999999999999873687899999999987652159-889999999829999999999 Q ss_pred HHHHHHHHHHHHHHCEEEEEEECHHHHCCCC Q ss_conf 9999999999988535665531488840676 Q gi|254780897|r 415 PIFEDKVIDHILKSVQIVDRKVTFDQLFDNS 445 (473) Q Consensus 415 ~ile~Kv~d~l~~~a~i~ek~~~~~el~~~~ 445 (473) .++++||++||+++|+++++++|++||++.. T Consensus 154 ~i~~~Kv~~~l~~~akv~ek~~s~~El~~~~ 184 (185) T d1w26a1 154 VALEEQAVEAVLAKAKVTEKETTFNELMNQQ 184 (185) T ss_dssp HHHHHHHHHHHHTTSBCCEEECCHHHHTCCC T ss_pred HHHHHHHHHHHHHHCEEEEEECCHHHHHCCC T ss_conf 9999999999998683000105599972678 |
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} | Back information, alignment and structure |
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>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} | Back information, alignment and structure |
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>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
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>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
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>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
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>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
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>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus | ||
1zxj_A_ | 218 | (A:) MPN555, hypothetical protein Mg377 homolog; m | 5e-23 | |
2nsa_A_ | 170 | (A:) Trigger factor, TF; chaperone; 1.70A {Thermot | 2e-18 | |
1t11_A_121-151_258-392 | 166 | (A:121-151,A:258-392) Trigger factor, TF; helix-tu | 1e-14 | |
1t11_A_1-120 | 120 | (A:1-120) Trigger factor, TF; helix-turn-helix, fo | 3e-18 | |
1p9y_A_ | 121 | (A:) Trigger factor, TF; alpha-beta protein, isome | 5e-18 | |
1w26_A_1-117 | 117 | (A:1-117) Trigger factor, TF; chaperone, protein f | 8e-17 | |
3gty_X_1-108 | 108 | (X:1-108) Trigger factor, TF; chaperone-client com | 1e-15 | |
2d3o_1_ | 112 | (1:) Trigger factor, TF; ribosome, nascent chain, | 2e-13 | |
2nsc_A_21-109 | 89 | (A:21-109) Trigger factor, TF; chaperone; 2.20A {T | 1e-11 | |
1w26_A_133-254 | 122 | (A:133-254) Trigger factor, TF; chaperone, protein | 1e-12 | |
1t11_A_152-257 | 106 | (A:152-257) Trigger factor, TF; helix-turn-helix, | 6e-11 | |
3gty_X_146-239 | 94 | (X:146-239) Trigger factor, TF; chaperone-client c | 2e-09 | |
1hxv_A_ | 113 | (A:) Trigger factor; FKBP fold, ppiase, chaperone; | 4e-09 | |
1p5q_A_1-136 | 136 | (A:1-136) FKBP52, FK506-binding protein 4; isomera | 6e-09 | |
2kfw_A_1-70_125-196 | 142 | (A:1-70,A:125-196) FKBP-type peptidyl-prolyl CIS-t | 7e-09 | |
3cgm_A_1-64_121-158 | 102 | (A:1-64,A:121-158) SLYD, peptidyl-prolyl CIS-trans | 9e-09 | |
2k8i_A_1-69_125-171 | 116 | (A:1-69,A:125-171) SLYD, peptidyl-prolyl CIS-trans | 1e-07 | |
1ix5_A_1-82_135-151 | 99 | (A:1-82,A:135-151) FKBP; ppiase, isomerase; NMR {M | 0.001 | |
1w26_A_118-132_255-301_415-432 | 80 | (A:118-132,A:255-301,A:415-432) Trigger factor, TF | 5e-04 |
>1zxj_A (A:) MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}Length = 218 | Back alignment and structure |
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Score = 103 bits (258), Expect = 5e-23 Identities = 21/232 (9%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 211 LVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLGFES- 269 +I + +A +K + + V A E Sbjct: 3 SSHHHHHHDYDIP-TTENLYFQGHMATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQH 61 Query: 270 -----ESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQK 324 S S + + +++ + ++ I + F++ E+ ++N G+ + Sbjct: 62 RQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRD 121 Query: 325 VRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSAL 384 V ++ A++ + +V + ++ +E+T+E +++ + Sbjct: 122 VIQGAEDNTVQAI----------------AEKIIKKALVFNHLQKEWKVEITDEVVKNVI 165 Query: 385 YQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKV 436 + + + + +R + E++++ + + Sbjct: 166 SLYYEKT----NQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLT 213 |
>2nsa_A (A:) Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}Length = 170 | Back alignment and structure |
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>1t11_A (A:121-151,A:258-392) Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae}Length = 166 | Back alignment and structure |
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>1t11_A (A:1-120) Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae}Length = 120 | Back alignment and structure |
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>1p9y_A (A:) Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli}Length = 121 | Back alignment and structure |
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>1w26_A (A:1-117) Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli}Length = 117 | Back alignment and structure |
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>3gty_X (X:1-108) Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_ALength = 108 | Back alignment and structure |
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>2d3o_1 (1:) Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7Length = 112 | Back alignment and structure |
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>2nsc_A (A:21-109) Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_ALength = 89 | Back alignment and structure |
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>1w26_A (A:133-254) Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli}Length = 122 | Back alignment and structure |
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>1t11_A (A:152-257) Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae}Length = 106 | Back alignment and structure |
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>3gty_X (X:146-239) Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_ALength = 94 | Back alignment and structure |
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>1hxv_A (A:) Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium}Length = 113 | Back alignment and structure |
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>1p5q_A (A:1-136) FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}Length = 136 | Back alignment and structure |
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>2kfw_A (A:1-70,A:125-196) FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}Length = 142 | Back alignment and structure |
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>3cgm_A (A:1-64,A:121-158) SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain protein, rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_ALength = 102 | Back alignment and structure |
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>2k8i_A (A:1-69,A:125-171) SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}Length = 116 | Back alignment and structure |
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>1ix5_A (A:1-82,A:135-151) FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus}Length = 99 | Back alignment and structure |
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>1w26_A (A:118-132,A:255-301,A:415-432) Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli}Length = 80 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 473 | trigger factor [Candidatus Liberibacter asiaticus str. | ||
1zxj_A_ | 218 | MPN555, hypothetical protein Mg377 homolog; mostly | 99.97 | |
1t11_A_1-120 | 120 | Trigger factor, TF; helix-turn-helix, four-helix-b | 99.91 | |
1p9y_A_ | 121 | Trigger factor, TF; alpha-beta protein, isomerase; | 99.91 | |
1w26_A_1-117 | 117 | Trigger factor, TF; chaperone, protein folding, ri | 99.88 | |
3gty_X_1-108 | 108 | Trigger factor, TF; chaperone-client complex, cell | 99.79 | |
2d3o_1_ | 112 | Trigger factor, TF; ribosome, nascent chain, prote | 99.78 | |
2nsc_A_21-109 | 89 | Trigger factor, TF; chaperone; 2.20A {Thermotoga m | 99.64 | |
2nsa_A_ | 170 | Trigger factor, TF; chaperone; 1.70A {Thermotoga m | 99.84 | |
1w26_A_133-254 | 122 | Trigger factor, TF; chaperone, protein folding, ri | 99.82 | |
3gty_X_146-239 | 94 | Trigger factor, TF; chaperone-client complex, cell | 99.66 | |
1hxv_A_ | 113 | Trigger factor; FKBP fold, ppiase, chaperone; NMR | 99.64 | |
1t11_A_152-257 | 106 | Trigger factor, TF; helix-turn-helix, four-helix-b | 99.62 | |
3cgm_A_1-64_121-158 | 102 | SLYD, peptidyl-prolyl CIS-trans isomerase; chapero | 99.48 | |
2kfw_A_1-70_125-196 | 142 | FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD | 99.4 | |
2k8i_A_1-69_125-171 | 116 | SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, | 99.37 | |
1p5q_A_1-136 | 136 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.88 | |
1ix5_A_1-82_135-151 | 99 | FKBP; ppiase, isomerase; NMR {Methanothermococcust | 98.64 | |
2pbc_A_ | 102 | FK506-binding protein 2; endoplasmic reticulum, is | 98.5 | |
2d9f_A_ | 135 | FK506-binding protein 8 variant; FKBP, rapamycin, | 98.23 | |
2vn1_A_ | 129 | 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR | 98.08 | |
1jvw_A_ | 167 | Macrophage infectivity potentiator; chagas disease | 98.08 | |
1yat_A_ | 113 | FK506 binding protein; HET: FK5; 2.50A {Saccharomy | 98.02 | |
2ppn_A_ | 107 | FK506-binding protein 1A; high resolution protein | 97.96 | |
1fd9_A_52-213 | 162 | Protein (macrophage infectivity potentiator protei | 97.96 | |
1q6h_A_67-224 | 158 | FKBP-type peptidyl-prolyl CIS-trans isomerase FKPA | 97.92 | |
1r9h_A_ | 135 | FKB-6, FK506 binding protein family; structural ge | 97.84 | |
2awg_A_ | 118 | 38 kDa FK-506 binding protein; FKBP-type, ppiase, | 97.79 | |
2ke0_A_ | 117 | Peptidyl-prolyl CIS-trans isomerase; bupsa.00130.A | 97.71 | |
2jwx_A_ | 157 | FKBP38NTD, FK506-binding protein 8 variant; apopto | 97.65 | |
1pbk_A_ | 116 | FKBP25, EC 5.2.1.8; FKBP12 homologous domain of HF | 97.61 | |
2f4e_A_ | 180 | ATFKBP42; FKBP-like, alpha-beta, signaling protein | 97.56 | |
3b7x_A_ | 134 | FK506-binding protein 6; isomerase, repeat, rotama | 97.39 | |
2if4_A_1-166 | 166 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.38 | |
1kt0_A_1-257 | 257 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.35 | |
1u79_A_ | 129 | FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T | 96.99 | |
1kt0_A_1-257 | 257 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.48 | |
1t11_A_121-151_258-392 | 166 | Trigger factor, TF; helix-turn-helix, four-helix-b | 99.65 | |
1q1c_A_ | 280 | FK506-binding protein 4; rotamase, TPR repeat, nuc | 99.22 | |
1w26_A_118-132_255-301_415-432 | 80 | Trigger factor, TF; chaperone, protein folding, ri | 98.1 | |
1w26_A_362-414 | 53 | Trigger factor, TF; chaperone, protein folding, ri | 97.51 | |
3gty_X_351-403 | 53 | Trigger factor, TF; chaperone-client complex, cell | 92.88 | |
1m5y_A_71-132_370-400 | 93 | SurviVal protein, surviVal protein SURA; surviVal | 91.57 | |
1q1c_A_ | 280 | FK506-binding protein 4; rotamase, TPR repeat, nuc | 93.88 |
>1zxj_A (A:) MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} | Back alignment and structure |
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Probab=99.97 E-value=1.7e-30 Score=262.64 Aligned_cols=206 Identities=9% Similarity=0.066 Sum_probs=187.8 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 206887887543323444444410003873046761011002467776747887502-3655789999998878999977 Q gi|254780897|r 210 ILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLG-FESESAMRGLCSQKIKQHSEFL 288 (473) Q Consensus 210 ~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def~k~~~-~~t~~elk~~ik~~l~~~~~~~ 288 (473) +|+|||+||+++|+ +||+||+.+++|||++.|+|+|++|+++.+|++||+||++++ ++|+++||+.+++.|..++... T Consensus 2 gLiG~k~Ge~~~~~-~~p~dy~~~~lagk~~~f~v~v~~I~~~~~pel~de~~~~~~~~~tv~e~k~~~~~~l~~~~~~~ 80 (218) T 1zxj_A 2 GSSHHHHHHDYDIP-TTENLYFQGHMATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHE 80 (218) T ss_dssp ---------CCCC--------CCSSCC-CCSCEEEECSCCCTTSCEEECCSCCCHHHHHHHHHHHHTTCTTCCHHHHHHH T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97644555678865-52346856310233157700210004566677788999872545568999999999999999999 Q ss_pred H-----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7-----77669999999986400347999999997767899999975348640011000134567789999999999999 Q gi|254780897|r 289 V-----RQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIV 363 (473) Q Consensus 289 ~-----~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~Aek~vk~~li 363 (473) . ...+++++++.|++.++|++|+++|+++++++++++..+ ..++.++..|++++|++|| T Consensus 81 ~~~~~~~~~~~~~i~~~l~~~~~~~lpe~~i~~e~~~~~~~~~~~----------------~~~e~~~~~aek~lk~~li 144 (218) T 1zxj_A 81 LTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQG----------------AEDNTVQAIAEKIIKKALV 144 (218) T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999874888899999999999988999865----------------0136789999999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEE Q ss_conf 9999864387428999999999999863999899999987099989999999999999999988535665531 Q gi|254780897|r 364 LGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKV 436 (473) Q Consensus 364 l~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ile~Kv~d~l~~~a~i~ek~~ 436 (473) +++||+.++|+||++|+.+++.+++.+|+.++... .++++.+.++++.++++|+++||+++|+++++.. T Consensus 145 l~~ia~~e~i~vt~eei~~~i~~~a~~~~~~~~~~----~~~~~~~~~i~~~l~~~Kv~~~l~~~a~v~~~~~ 213 (218) T 1zxj_A 145 FNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREY----LDDKQKFEGVRTALLEERMVLETINHFKFHFNLT 213 (218) T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHSCSCCHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTCCEEECSS T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC T ss_conf 99999980899999999999999883378999999----9699999999999999999999998411400455 |
>1t11_A (A:1-120) Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} | Back alignment and structure |
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>1p9y_A (A:) Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} | Back alignment and structure |
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>1w26_A (A:1-117) Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} | Back alignment and structure |
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>3gty_X (X:1-108) Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A | Back alignment and structure |
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>2d3o_1 (1:) Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 | Back alignment and structure |
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>2nsc_A (A:21-109) Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A | Back alignment and structure |
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>2nsa_A (A:) Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} | Back alignment and structure |
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>1w26_A (A:133-254) Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} | Back alignment and structure |
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>3gty_X (X:146-239) Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A | Back alignment and structure |
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>1hxv_A (A:) Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} | Back alignment and structure |
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>1t11_A (A:152-257) Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} | Back alignment and structure |
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>3cgm_A (A:1-64,A:121-158) SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain protein, rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A | Back alignment and structure |
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>2kfw_A (A:1-70,A:125-196) FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} | Back alignment and structure |
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>2k8i_A (A:1-69,A:125-171) SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} | Back alignment and structure |
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>1p5q_A (A:1-136) FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} | Back alignment and structure |
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>1ix5_A (A:1-82,A:135-151) FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} | Back alignment and structure |
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>2pbc_A (A:) FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
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>2d9f_A (A:) FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
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>2vn1_A (A:) 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A | Back alignment and structure |
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>1jvw_A (A:) Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} | Back alignment and structure |
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>1yat_A (A:) FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
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>2ppn_A (A:) FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} | Back alignment and structure |
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>1fd9_A (A:52-213) Protein (macrophage infectivity potentiator protein); FKBP domain, long alpha helix, dimerisation VIA helical interactions, isomerase; 2.41A {Legionella pneumophila} | Back alignment and structure |
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>1q6h_A (A:67-224) FKBP-type peptidyl-prolyl CIS-trans isomerase FKPA; chaperone, peptidyl-prolyl isomerase, heat shock protein, periplasm, FKBP family; HET: MSE; 1.97A {Escherichia coli} | Back alignment and structure |
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>1r9h_A (A:) FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} | Back alignment and structure |
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>2awg_A (A:) 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A | Back |
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