HHsearch alignment for GI: 254780897 and conserved domain: pfam05698

>pfam05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus. In the E. coli cytosol, a fraction of the newly synthesized proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent p
Probab=99.89  E-value=1.1e-20  Score=184.43  Aligned_cols=158  Identities=22%  Similarity=0.399  Sum_probs=150.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HCCHH
Q ss_conf             55789999998878999977777669999999986400347999999997767899999975348640011----00013
Q gi|254780897|r  269 SESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNV----DSIDE  344 (473)
Q Consensus       269 t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~----~~~~e  344 (473)
T Consensus         1 Tl~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~evP~~~v~~e~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~e   80 (162)
T pfam05698         1 TLEELKEKLRKQLEEEKKEATAEELKEAILDKLVENAEIELPESLVEEEIDRLLRQFLQQLQGQGLDLEEYLSLSGSSEE   80 (162)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
T ss_conf             98999999999999999999999999999999998788999999999999999999999987669988888765256478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Q ss_conf             45677899999999999999999864387428999999999999863999899999987099989999999999999999
Q gi|254780897|r  345 EDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDH  424 (473)
Q Consensus       345 ~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ile~Kv~d~  424 (473)
T Consensus        81 ~~~~~~~~~A~~~vk~~lil~~Ia~~e~i~vs~eev~~~i~~~a~~~~~~~~~i~~~~~~~-~~l~~l~~~ll~~K~~d~  159 (162)
T pfam05698        81 ELREEFKEEAEKRVKLGLILEEIAKEEKIEVTDEEIKEEIEELASQYGMEPEEVKEFYKKN-EQLSALKEDLLEEKAVDL  159 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHH
T ss_conf             8878889999999999999999998808998999999999999988699999999999755-569999999999999999


Q ss_pred             HHH
Q ss_conf             988
Q gi|254780897|r  425 ILK  427 (473)
Q Consensus       425 l~~  427 (473)
T Consensus       160 l~E  162 (162)
T pfam05698       160 LLE  162 (162)
T ss_pred             HHC
T ss_conf             739