HHsearch alignment of GI: 254780897 and MMDB domain: 2d3o_1_
>2d3o_1 (1:) Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.78 E-value=4e-19 Score=171.45 Aligned_cols=111 Identities=19% Similarity=0.295 Sum_probs=99.8
Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 911899727976999998548999999999999987507389858970488999986108-9999999999999999999
Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK-SILSETIDEIIKEIVPEIL 79 (473)
Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~-~i~~e~~~~li~~~~~~~i 79 (473)
|+.+. +.++|+++++|+||+++|+.++++++++++++++||||||||||+++|+++||+ +|+.++++.+++.++.+++
T Consensus 1 M~~i~-~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~k~~kipGFRkGKvP~~ii~k~~g~~~i~~e~~~~~i~~~~~~~~ 79 (112)
T 2d3o_1 1 MAELI-SKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAPRKVIENRVGKGYVESQVRDRLLETHYSQGL 79 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSCBTTBCTTCCCSTTHHHHTTTTSSHHHHHHHHHHHHHHHHH
T ss_pred CCEEE-ECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96258-53798899999998999999999999999851889997798885899998856999999999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 8729954228741222222333211013788205788762278
Q gi|254780897|r 80 SKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILP 122 (473)
Q Consensus 80 ~~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~P 122 (473)
+++++.|++.|.. + ..++.+++|+|+++|+++|
T Consensus 80 ~e~~~~~i~p~~~-~---------~~~~~~~~~~~~~~~ev~P 112 (112)
T 2d3o_1 80 RELGLNLVDATVD-P---------QDVQSGQAFEFTVKGETYP 112 (112)
T ss_dssp HHSCCCCCCEECC-C---------CCCCSSSCCCEEEEEC---
T ss_pred HHCCCCCCCCCCC-C---------CCCCCCCCEEEEEEEEEEC
T ss_conf 9879988899727-4---------3457899779999999619