HHsearch alignment of GI: 254780897 and MMDB domain: 2d3o_1_

>2d3o_1 (1:) Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.78  E-value=4e-19  Score=171.45  Aligned_cols=111  Identities=19%  Similarity=0.295  Sum_probs=99.8

Q ss_pred             CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             911899727976999998548999999999999987507389858970488999986108-9999999999999999999
Q gi|254780897|r    1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK-SILSETIDEIIKEIVPEIL   79 (473)
Q Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~-~i~~e~~~~li~~~~~~~i   79 (473)
                      |+.+. +.++|+++++|+||+++|+.++++++++++++++||||||||||+++|+++||+ +|+.++++.+++.++.+++
T Consensus         1 M~~i~-~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~k~~kipGFRkGKvP~~ii~k~~g~~~i~~e~~~~~i~~~~~~~~   79 (112)
T 2d3o_1            1 MAELI-SKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAPRKVIENRVGKGYVESQVRDRLLETHYSQGL   79 (112)
T ss_dssp             ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSCBTTBCTTCCCSTTHHHHTTTTSSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEE-ECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             96258-53798899999998999999999999999851889997798885899998856999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             8729954228741222222333211013788205788762278
Q gi|254780897|r   80 SKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILP  122 (473)
Q Consensus        80 ~~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~P  122 (473)
                      +++++.|++.|.. +         ..++.+++|+|+++|+++|
T Consensus        80 ~e~~~~~i~p~~~-~---------~~~~~~~~~~~~~~~ev~P  112 (112)
T 2d3o_1           80 RELGLNLVDATVD-P---------QDVQSGQAFEFTVKGETYP  112 (112)
T ss_dssp             HHSCCCCCCEECC-C---------CCCCSSSCCCEEEEEC---
T ss_pred             HHCCCCCCCCCCC-C---------CCCCCCCCEEEEEEEEEEC
T ss_conf             9879988899727-4---------3457899779999999619