HHsearch results for GI: 254780897 and protein with PDBid: 1t11_A
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=100.00 E-value=0 Score=597.48 Aligned_cols=387 Identities=21% Similarity=0.428 Sum_probs=365.3
Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 91189972797699999854899999999999998750738985897048899998610899999999999999999998
Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS 80 (473)
Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~ 80 (473)
|+|++++.++|+++|+|+||++++...++++++.++++++||||||||||++||+++||++|+.++++.+++.++.+++.
T Consensus 4 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~k~~g~~i~~e~~~~~i~~~~~~~~~ 83 (392)
T 1t11_A 4 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKAVRQDVLGEVMQRHFIEAIV 83 (392)
T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15899987884899999987999999999999999703888997999988999999987999999999999999999987
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 72995422874122222233321101378820578876227877621113564310012111157899999976431000
Q gi|254780897|r 81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAF 160 (473)
Q Consensus 81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l~~y~~i~i~~~~~~vtd~~Id~~i~~l~~~~~~~ 160 (473)
++++.|+++|.+.... +..+++|+|++.|+++|+|+|++|++++++.+..+|||++|+++|+++++++|+|
T Consensus 84 e~~~~~~~~p~~~~~~---------~~~~~~~~~~~~~~v~Pe~~l~~~~~i~v~~~~~~vtde~id~~i~~l~~~~a~~ 154 (392)
T 1t11_A 84 KEKINPAGAPTFAPVE---------IGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDADVAEMLETLRKQQATW 154 (392)
T ss_dssp HTTCCBSSCCEEEEEE---------CCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTHHHHHHHHHHHHHCEE
T ss_pred HHCCCCCCCCCCCCCC---------CCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6424877787646221---------3568874899989961566667654235663210011679999999998751366
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 02343322111134445666426534666544203651786656310342068878875433234444444100038730
Q gi|254780897|r 161 EVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240 (473)
Q Consensus 161 ~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v 240 (473)
++++++++.||.|++||.++.+|++++|++..++.+.+|++.+++||.++|+|||+|++++|+++||+||+...+||+++
T Consensus 155 ~~~~~~~~~gd~v~vd~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~~~~~l~G~k~ge~~~~~~~~p~d~~~~~~agk~~ 234 (392)
T 1t11_A 155 KEVDEAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKGKAA 234 (392)
T ss_dssp EECSCCCCTTCEEEEEEEEESSSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTTSSCEE
T ss_pred CCCCHHHCCCCEEEEEEEEEECCEECCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCH
T ss_conf 33654432588899988997888654587656638995688666204555217767874168886576323321035302
Q ss_pred EEEEEHHHHHCCCCCCCCHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 46761011002467776747887502--3655789999998878999977777669999999986400347999999997
Q gi|254780897|r 241 RLNFSIKEVFSPLPVVVNNDLAVRLG--FESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEY 318 (473)
Q Consensus 241 ~f~v~v~~I~~~~~pel~def~k~~~--~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~ 318 (473)
.|+|+|++|+++.+|+|||+||++++ ++|+++||+.|+++|..++....++.++++++++|++.+.|++|+++|++++
T Consensus 235 ~f~v~V~~I~~~~~peL~def~k~~~~~~~t~eelk~~i~~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~~v~~~~ 314 (392)
T 1t11_A 235 KFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEI 314 (392)
T ss_dssp EECCCEEEEEEEECCCCSTGGGGGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHH
T ss_pred HHEEHHHEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 11000000101567654599999828731248899999999999999999999999878998887368889926999999
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 76789999997534864001100013456778999999999999999998643874289999999999998639998999
Q gi|254780897|r 319 NGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKM 398 (473)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~ 398 (473)
+++++++.+++. ..... ..+..++.+++.|++++||+||+++||+.+||+||++||++++.+++++|+ ++.++
T Consensus 315 ~~~~~~~~~~~~---~~~~~---~~~~~~e~~~~~a~~~vk~~lil~~Ia~~e~I~vs~eei~~~i~~~a~~y~-~~~e~ 387 (392)
T 1t11_A 315 NVLRQQAAQRFG---GNVEA---AAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMATAYE-DPSEV 387 (392)
T ss_dssp HHHHHHHHHHSS---CSHHH---HTTSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHC---CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CHHHH
T ss_conf 999999998827---88445---557789899999999999999999999997898899999999999998459-98999
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780897|r 399 LDHFQ 403 (473)
Q Consensus 399 ~~~~~ 403 (473)
+++|.
T Consensus 388 ~~~y~ 392 (392)
T 1t11_A 388 VSYYE 392 (392)
T ss_dssp -----
T ss_pred HHHHC
T ss_conf 98619