HHsearch results for GI: 254780897 and protein with PDBid: 2d3o_1
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.81 E-value=4e-20 Score=178.26 Aligned_cols=107 Identities=19% Similarity=0.357 Sum_probs=98.6
Q ss_pred EECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 97279769999985489999999999999875073898589704889999861089-99999999999999999987299
Q gi|254780897|r 6 KFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKS-ILSETIDEIIKEIVPEILSKRDE 84 (473)
Q Consensus 6 ~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~-i~~e~~~~li~~~~~~~i~~~~~ 84 (473)
++.++++++|+|+||+++|+..+++++++++++++||||||||||+++|+++||++ |+.++++++++.+|.++++++++
T Consensus 5 ~k~e~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~~g~~~i~~e~~~~~i~~~~~~~l~e~~l 84 (112)
T 2d3o_1 5 ISKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAPRKVIENRVGKGYVESQVRDRLLETHYSQGLRELGL 84 (112)
T ss_dssp -----CCEEEEECCCGGGTHHHHHHHHHHHHTTSCBTTBCTTCCCSTTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 85279889999999899999999999999985088999779987889999986789999999999999999999998799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 54228741222222333211013788205788762278
Q gi|254780897|r 85 RAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILP 122 (473)
Q Consensus 85 ~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~P 122 (473)
.|++ |.+.+.. ++.+++|+|+++|+|+|
T Consensus 85 ~~~~-p~i~~~~---------~~~~~~~~f~~~~ev~P 112 (112)
T 2d3o_1 85 NLVD-ATVDPQD---------VQSGQAFEFTVKGETYP 112 (112)
T ss_dssp CCCC-EECCCCC---------CCSSSCCCEEEEEC---
T ss_pred CCCC-CCCCCCC---------CCCCCCEEEEEEEEEEC
T ss_conf 8889-9737534---------57999779999999619