HHSEARCH alignment of GI: 254780897 and SCOP domain: d1p9ya_

Alignment
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=99.92  E-value=2.1e-24  Score=210.58  Aligned_cols=117  Identities=21%  Similarity=0.458  Sum_probs=112.0

Q ss_pred             CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             91189972797699999854899999999999998750738985897048899998610899999999999999999998
Q gi|254780897|r    1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS   80 (473)
Q Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~   80 (473)
                      |+|++++.++|+++|+|+||+++|+..+++++++++++++||||||||||+++|+++||++|++++++++++.+|.++++
T Consensus         1 M~v~v~~~~~~~~~l~i~v~~~~v~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yg~~i~~e~~~~li~~~~~~al~   80 (117)
T d1p9ya_           1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAII   80 (117)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95489966787799999998999999999999999822888886788765899999874889999999999999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             7299542287412222223332110137882057887622787762
Q gi|254780897|r   81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEI  126 (473)
Q Consensus        81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l  126 (473)
                      ++++.|+++|.+...+         ++.+++|+|+++|+++|+|+|
T Consensus        81 e~~l~~~~~P~i~~~~---------~~~~~~~~f~~~~ev~Pei~L  117 (117)
T d1p9ya_          81 KEKINPAGAPTYVPGE---------YKLGEDFTYSVEFEVYPEVEL  117 (117)
T ss_dssp             HTTCCCEEEEEEEECC---------CCSSSCEEEEEEEECCCCCCC
T ss_pred             HCCCCCCCCCCCCCCC---------CCCCCCEEEEEEEEECCCEEC
T ss_conf             6455766798646344---------467997799999986785569


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Escherichia coli [TaxId: 562]