HHSEARCH alignment of GI: 254780897 and SCOP domain: d1t11a2

Alignment

Probab=99.94  E-value=5.4e-26  Score=223.41  Aligned_cols=129  Identities=26%  Similarity=0.542  Sum_probs=123.4

Q ss_pred             CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             91189972797699999854899999999999998750738985897048899998610899999999999999999998
Q gi|254780897|r    1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS   80 (473)
Q Consensus         1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~   80 (473)
                      |++++++.++++++|+|+||+++|+.++++++++++++++||||||||||+++|+++||++|+.++++.+++.+|.++++
T Consensus         1 M~~~~~~~~~~~~~l~v~v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~k~~~~~i~~e~~~~~i~~~~~~~l~   80 (129)
T d1t11a2           1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKAVRQDVLGEVMQRHFIEAIV   80 (129)
T ss_dssp             CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95389976786899999998999999999999999975778987799973999999850167899999999999999997


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             7299542287412222223332110137882057887622787762111356431001
Q gi|254780897|r   81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEISSFDDLQVTQDI  138 (473)
Q Consensus        81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l~~y~~i~i~~~~  138 (473)
                      ++++.|+++|.+...+         ++.+++|+|+++|+++|+|++++|+++++++|+
T Consensus        81 e~~i~~~~~p~i~~~~---------~~~~~~~~~~~~~ev~Pei~l~~y~~l~v~kPs  129 (129)
T d1t11a2          81 KEKINPAGAPTFAPVE---------IGEGKDLVFTATFEVYPEVELKGLENIAVEKPA  129 (129)
T ss_dssp             HTTCCBSSCCEEEEEE---------CCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSC
T ss_pred             HCCCCCCCCCCCCCCC---------CCCCCCEEEEEEEEECCCCCCCCCCCCEEECCC
T ss_conf             5024766688767433---------468985799999997486125886750760689

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Trigger factor ribosome-binding domain
family: Trigger factor ribosome-binding domain
domain: Trigger factor ribosome-binding domain
species: Vibrio cholerae [TaxId: 666]