RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62] (473 letters) >gnl|CDD|179299 PRK01490, tig, trigger factor; Provisional. Length = 435 Score = 295 bits (759), Expect = 1e-80 Identities = 123/443 (27%), Positives = 239/443 (53%), Gaps = 12/443 (2%) Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60 MQV + EGL+R L + +P+ + + ++ ++ + I GFR GKVP ++ YG+ Sbjct: 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVRIPGFRKGKVPRKIVEQRYGE 60 Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120 S+ E +++++ E E + + R A +P I E E DL+ ++ Sbjct: 61 SVRQEALNDLLPEAYEEAIKEEGIRPAGQPEIEPTEEEKG---------KDLEFTAEVEV 111 Query: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180 P++E+ + L+V + + EV ++++D ++ + K E +E GD+VT+D+ S Sbjct: 112 YPEVELGDYKGLEVEKPVVEVTDEDVDEELERLRKQFATLVPVERPAENGDRVTIDFVGS 171 Query: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240 +D E ++ +GS E LVG+K G++K I+ FPED+ +DLAGK+ Sbjct: 172 IDGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLAGKEA 231 Query: 241 RLNFSIKEVFSPLPVVVNNDLAVRLG-FESESAMRGLCSQKIKQHSEFLVRQKVKRQILD 299 ++KEV ++++ A +LG FE+ ++ + +++ + R KVK +LD Sbjct: 232 TFKVTVKEVKEKELPELDDEFAKKLGEFETLEELKADIRKNLEREKKEAQRAKVKEAVLD 291 Query: 300 YISNKYTFDVPESLVENEYNGIL-QKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRV 358 + D+PE+LVE E + +L Q ++ + Q ++ + +EE + + A+RRV Sbjct: 292 ALVENAEIDLPEALVEQEIDRLLRQALQQGLDLEGQFLEDTGTTEEEPREEFREQAERRV 351 Query: 359 LTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFE 418 G++L I + IEV++EE+++ + + ++ G ++++ + K P LA LRA + E Sbjct: 352 KLGLLLDEIAKAEEIEVSDEEVKAEIEEMASQY-GQPPEVIEFYLKNPQLLAALRADVLE 410 Query: 419 DKVIDHILKSVQIVDRKVTFDQL 441 +KV+D +L+ ++ D++V+F++L Sbjct: 411 EKVVDFLLEKAKVTDKEVSFEEL 433 >gnl|CDD|161716 TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. Length = 408 Score = 264 bits (678), Expect = 3e-71 Identities = 112/418 (26%), Positives = 224/418 (53%), Gaps = 14/418 (3%) Query: 13 RELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIK 72 R+L V +P+ + + ++ ++++ K I GFR GKVP S ++ YGK + E ++E+++ Sbjct: 1 RKLTVEVPAEEVEEEVDKALKELAKKVKIPGFRKGKVPRSVVEKRYGKEVRQEALNELLQ 60 Query: 73 EIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEISSFDDL 132 E E + + R +P I + E E DL+ +++ P++E+ + + Sbjct: 61 EAFSEAVKEEKIRPIGQPEIEVKEIEDG---------KDLEFTAEFEVYPEVELGDYKGI 111 Query: 133 QVTQDICEVDEKEIDRQMAEIAKNNVAFE-VKETESEIGDKVTVDYTVSVDNVILEDQSK 191 +V + EV ++++D ++ ++ + N V+ +E GD+VT+D+ +D E Sbjct: 112 EVEKPEVEVTDEDVDEELEKLREQNATLVPVERRAAEKGDRVTIDFEGFIDGEAFEGGKA 171 Query: 192 KNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFS 251 +N +GS E LVG+K G++KEI+ FPED+ ++LAGK+ ++KEV Sbjct: 172 ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELAGKEATFKVTVKEVKE 231 Query: 252 PLPVVVNNDLAVRLG--FESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDV 309 ++++ A LG FE+ ++ + +++ + + K+K Q+LD + F++ Sbjct: 232 KELPELDDEFAKELGEEFETLEELKADIRKNLEREKKERAKNKLKEQLLDKLVENNEFEL 291 Query: 310 PESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQ-YYHMLAKRRVLTGIVLGTIG 368 PESLVE E + +L++ ++ + EE+L+ + A+RRV G++L I Sbjct: 292 PESLVEQEIDRLLEQALQQLQQQGIDLEEYLKDTEEELREEFREEAERRVKLGLILEEIA 351 Query: 369 EKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHIL 426 +K IEV+EEE+++ + + ++ +++ +++K L +LR + E+KV+D +L Sbjct: 352 KKEKIEVSEEEVEAEIEELAQQYGEDPEEVKKYYKK-NELLEQLRNDLLEEKVVDFLL 408 >gnl|CDD|150196 pfam09441, Abp2, ARS binding protein 2. This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals. Length = 176 Score = 29.0 bits (65), Expect = 2.4 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query: 260 DLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQI---LDYISNK---YTFDVPES 312 LA++LG E A +G +QKI+Q++ L R + +Y+ K Y ++P Sbjct: 75 QLALKLGVEPPDAEKGQSTQKIQQYAVRLKRWMHAMHVDAFFEYLLGKPHPYYTEIPPL 133 >gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated. Length = 764 Score = 28.2 bits (63), Expect = 4.5 Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 55 KSLYGKSILSETIDEIIKEIVPEILSKRDE 84 + LYG+ +L E IKE+ I +RD Sbjct: 127 EKLYGEYLLQNYSKEEIKELEKYIKPERDF 156 >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional. Length = 409 Score = 27.7 bits (61), Expect = 6.2 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 344 EEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPG----HEKK 397 E+D+++ LAK L + T+G KN + +T QS+L LGR H KK Sbjct: 351 EDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408 >gnl|CDD|179889 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional. Length = 265 Score = 27.9 bits (63), Expect = 6.4 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 9/59 (15%) Query: 149 QMAEIAK-NNVAFEV--------KETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIV 198 Q+ EIA NN F K + DY ++VD++ ++ ++ K++++ V Sbjct: 179 QLTEIASINNRVFRTLGSPLILPKHHTITLKPVNDDDYQITVDHLTIKHKNVKSIEYRV 237 >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional. Length = 620 Score = 27.6 bits (61), Expect = 6.7 Identities = 12/47 (25%), Positives = 28/47 (59%) Query: 281 IKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRF 327 + +E ++ + ++L+YI ++ FDV +++ EN+ +L+ RF Sbjct: 237 VGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARF 283 >gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed. Length = 865 Score = 27.4 bits (62), Expect = 8.7 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 11/57 (19%) Query: 131 DLQVTQDICE-----VDEKEIDRQMAE---IAKNNVAFEVK-ETESEIGDKVTVDYT 178 DL T +I VDE+ + M E A+ F+ E+ D + ++ Sbjct: 394 DL--TAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGDYNALEELLDDLATEFV 448 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.314 0.133 0.354 Gapped Lambda K H 0.267 0.0693 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,595,043 Number of extensions: 507050 Number of successful extensions: 913 Number of sequences better than 10.0: 1 Number of HSP's gapped: 899 Number of HSP's successfully gapped: 31 Length of query: 473 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 376 Effective length of database: 3,898,497 Effective search space: 1465834872 Effective search space used: 1465834872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 59 (26.6 bits)