RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus
Liberibacter asiaticus str. psy62]
(473 letters)
>gnl|CDD|179299 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 295 bits (759), Expect = 1e-80
Identities = 123/443 (27%), Positives = 239/443 (53%), Gaps = 12/443 (2%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQV + EGL+R L + +P+ + + ++ ++ + I GFR GKVP ++ YG+
Sbjct: 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVRIPGFRKGKVPRKIVEQRYGE 60
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
S+ E +++++ E E + + R A +P I E E DL+ ++
Sbjct: 61 SVRQEALNDLLPEAYEEAIKEEGIRPAGQPEIEPTEEEKG---------KDLEFTAEVEV 111
Query: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180
P++E+ + L+V + + EV ++++D ++ + K E +E GD+VT+D+ S
Sbjct: 112 YPEVELGDYKGLEVEKPVVEVTDEDVDEELERLRKQFATLVPVERPAENGDRVTIDFVGS 171
Query: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240
+D E ++ +GS E LVG+K G++K I+ FPED+ +DLAGK+
Sbjct: 172 IDGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLAGKEA 231
Query: 241 RLNFSIKEVFSPLPVVVNNDLAVRLG-FESESAMRGLCSQKIKQHSEFLVRQKVKRQILD 299
++KEV ++++ A +LG FE+ ++ + +++ + R KVK +LD
Sbjct: 232 TFKVTVKEVKEKELPELDDEFAKKLGEFETLEELKADIRKNLEREKKEAQRAKVKEAVLD 291
Query: 300 YISNKYTFDVPESLVENEYNGIL-QKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRV 358
+ D+PE+LVE E + +L Q ++ + Q ++ + +EE + + A+RRV
Sbjct: 292 ALVENAEIDLPEALVEQEIDRLLRQALQQGLDLEGQFLEDTGTTEEEPREEFREQAERRV 351
Query: 359 LTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFE 418
G++L I + IEV++EE+++ + + ++ G ++++ + K P LA LRA + E
Sbjct: 352 KLGLLLDEIAKAEEIEVSDEEVKAEIEEMASQY-GQPPEVIEFYLKNPQLLAALRADVLE 410
Query: 419 DKVIDHILKSVQIVDRKVTFDQL 441
+KV+D +L+ ++ D++V+F++L
Sbjct: 411 EKVVDFLLEKAKVTDKEVSFEEL 433
>gnl|CDD|161716 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome.
Length = 408
Score = 264 bits (678), Expect = 3e-71
Identities = 112/418 (26%), Positives = 224/418 (53%), Gaps = 14/418 (3%)
Query: 13 RELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIK 72
R+L V +P+ + + ++ ++++ K I GFR GKVP S ++ YGK + E ++E+++
Sbjct: 1 RKLTVEVPAEEVEEEVDKALKELAKKVKIPGFRKGKVPRSVVEKRYGKEVRQEALNELLQ 60
Query: 73 EIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEISSFDDL 132
E E + + R +P I + E E DL+ +++ P++E+ + +
Sbjct: 61 EAFSEAVKEEKIRPIGQPEIEVKEIEDG---------KDLEFTAEFEVYPEVELGDYKGI 111
Query: 133 QVTQDICEVDEKEIDRQMAEIAKNNVAFE-VKETESEIGDKVTVDYTVSVDNVILEDQSK 191
+V + EV ++++D ++ ++ + N V+ +E GD+VT+D+ +D E
Sbjct: 112 EVEKPEVEVTDEDVDEELEKLREQNATLVPVERRAAEKGDRVTIDFEGFIDGEAFEGGKA 171
Query: 192 KNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFS 251
+N +GS E LVG+K G++KEI+ FPED+ ++LAGK+ ++KEV
Sbjct: 172 ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELAGKEATFKVTVKEVKE 231
Query: 252 PLPVVVNNDLAVRLG--FESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDV 309
++++ A LG FE+ ++ + +++ + + K+K Q+LD + F++
Sbjct: 232 KELPELDDEFAKELGEEFETLEELKADIRKNLEREKKERAKNKLKEQLLDKLVENNEFEL 291
Query: 310 PESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQ-YYHMLAKRRVLTGIVLGTIG 368
PESLVE E + +L++ ++ + EE+L+ + A+RRV G++L I
Sbjct: 292 PESLVEQEIDRLLEQALQQLQQQGIDLEEYLKDTEEELREEFREEAERRVKLGLILEEIA 351
Query: 369 EKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHIL 426
+K IEV+EEE+++ + + ++ +++ +++K L +LR + E+KV+D +L
Sbjct: 352 KKEKIEVSEEEVEAEIEELAQQYGEDPEEVKKYYKK-NELLEQLRNDLLEEKVVDFLL 408
>gnl|CDD|150196 pfam09441, Abp2, ARS binding protein 2. This DNA-binding protein
binds to the autonomously replicating sequence (ARS)
binding element. It may play a role in regulating the
cell cycle response to stress signals.
Length = 176
Score = 29.0 bits (65), Expect = 2.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 260 DLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQI---LDYISNK---YTFDVPES 312
LA++LG E A +G +QKI+Q++ L R + +Y+ K Y ++P
Sbjct: 75 QLALKLGVEPPDAEKGQSTQKIQQYAVRLKRWMHAMHVDAFFEYLLGKPHPYYTEIPPL 133
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 28.2 bits (63), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 55 KSLYGKSILSETIDEIIKEIVPEILSKRDE 84
+ LYG+ +L E IKE+ I +RD
Sbjct: 127 EKLYGEYLLQNYSKEEIKELEKYIKPERDF 156
>gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 409
Score = 27.7 bits (61), Expect = 6.2
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 344 EEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPG----HEKK 397
E+D+++ LAK L + T+G KN + +T QS+L LGR H KK
Sbjct: 351 EDDMEFCLKLAKEESLIILPGVTVGLKNWLRITFAVEQSSLEDGLGRLKSFCGRHAKK 408
>gnl|CDD|179889 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 265
Score = 27.9 bits (63), Expect = 6.4
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 149 QMAEIAK-NNVAFEV--------KETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIV 198
Q+ EIA NN F K + DY ++VD++ ++ ++ K++++ V
Sbjct: 179 QLTEIASINNRVFRTLGSPLILPKHHTITLKPVNDDDYQITVDHLTIKHKNVKSIEYRV 237
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 27.6 bits (61), Expect = 6.7
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 281 IKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRF 327
+ +E ++ + ++L+YI ++ FDV +++ EN+ +L+ RF
Sbjct: 237 VGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARF 283
>gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 27.4 bits (62), Expect = 8.7
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 131 DLQVTQDICE-----VDEKEIDRQMAE---IAKNNVAFEVK-ETESEIGDKVTVDYT 178
DL T +I VDE+ + M E A+ F+ E+ D + ++
Sbjct: 394 DL--TAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGDYNALEELLDDLATEFV 448
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.133 0.354
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,595,043
Number of extensions: 507050
Number of successful extensions: 913
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 31
Length of query: 473
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,898,497
Effective search space: 1465834872
Effective search space used: 1465834872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.6 bits)