RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus
Liberibacter asiaticus str. psy62]
(473 letters)
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha
helical protein, TRI-lobal structure, structural
genomics, PSI; 2.80A {Mycoplasma pneumoniae} (A:)
Length = 218
Score = 103 bits (258), Expect = 5e-23
Identities = 21/232 (9%), Positives = 71/232 (30%), Gaps = 27/232 (11%)
Query: 211 LVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLGFES- 269
+I + +A +K + + V A E
Sbjct: 3 SSHHHHHHDYDIP-TTENLYFQGHMATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQH 61
Query: 270 -----ESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQK 324
S S + + +++ + ++ I + F++ E+ ++N G+ +
Sbjct: 62 RQRILASFKDAKESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRD 121
Query: 325 VRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSAL 384
V ++ A++ + +V + ++ +E+T+E +++ +
Sbjct: 122 VIQGAEDNTVQAI----------------AEKIIKKALVFNHLQKEWKVEITDEVVKNVI 165
Query: 385 YQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKV 436
+ + + + +R + E++++ + +
Sbjct: 166 SLYYEKT----NQSVREYLDDKQKFEGVRTALLEERMVLETINHFKFHFNLT 213
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
(A:)
Length = 170
Score = 88.3 bits (219), Expect = 2e-18
Identities = 23/167 (13%), Positives = 68/167 (40%), Gaps = 2/167 (1%)
Query: 267 FESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVR 326
FE+ ++ ++ K+ + ++ + Q+L+ + ++ + +E N + +++
Sbjct: 3 FETLEQLKESLKKEGKEIYDVEXKESXREQLLEKLPEIVEIEISDRTLEILVNEAINRLK 62
Query: 327 FEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQ 386
E ++ + +E+ + + V+ + ++ I V +EE++ +
Sbjct: 63 REG--RYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEE 120
Query: 387 QLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVD 433
+ + + + ELR I + KV+D +L+ V+
Sbjct: 121 LAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQEVEHHH 167
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle,
ppiase, chaperone; 2.50A {Vibrio cholerae} (A:1-120)
Length = 120
Score = 87.9 bits (218), Expect = 3e-18
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 9/126 (7%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQV + EGL+R L++ +P+ + D+ + +I GFR GKVP+ + +YGK
Sbjct: 4 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK 63
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
++ + + E+++ E + K A P+ E DL ++++
Sbjct: 64 AVRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEG---------KDLVFTATFEV 114
Query: 121 LPQIEI 126
P++E+
Sbjct: 115 YPEVEL 120
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A
{Escherichia coli} (A:)
Length = 121
Score = 86.7 bits (215), Expect = 5e-18
Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQV + ++GL R + + I ++ + + + ++ K I G R GKVP++ + YG
Sbjct: 4 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGA 63
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
S+ + + +++ + + K A P+ E + D + +++
Sbjct: 64 SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLG---------EDFTYSVEFEV 114
Query: 121 LPQIEI 126
P++E+
Sbjct: 115 YPEVEL 120
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome
associated protein, nascent chain, cell division,
isomerase; 2.7A {Escherichia coli} (A:1-117)
Length = 117
Score = 82.9 bits (205), Expect = 8e-17
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 2 QVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKS 61
QV + ++GL R + + I ++ + + + ++ K I GFR GKVP + + YG S
Sbjct: 2 QVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPXNIVAQRYGAS 61
Query: 62 ILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDIL 121
+ + + ++ + + K A P+ E + D + +++
Sbjct: 62 VRQDVLGDLXSRNFIDAIIKEKINPAGAPTYVPGEYKLG---------EDFTYSVEFEVY 112
Query: 122 PQIEI 126
P++E+
Sbjct: 113 PEVEL 117
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle,
cell division, chaperone, isomerase, rotamase,
ribonucleoprotein; 3.40A {Thermotoga maritima} PDB:
3gu0_A (X:1-108)
Length = 108
Score = 79.4 bits (196), Expect = 1e-15
Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
M+V E + + L+ + + + + ++ + + + I GFR G++P + +K G+
Sbjct: 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGE 60
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
T+D ++ I + +D + + P +T E + D+ R+ ++
Sbjct: 61 EFQEYTLDFLMDLIPDTL---KDRKLILSPIVTERELK------------DVTARVVVEV 105
Query: 121 LPQ 123
+
Sbjct: 106 HEE 108
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle,
ppiase, chaperone; 2.50A {Vibrio cholerae}
(A:121-151,A:258-392)
Length = 166
Score = 75.6 bits (186), Expect = 1e-14
Identities = 21/138 (15%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 266 GFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKV 325
A++ + +++ + ++ ++K Q ++ + + VP +L++ E N + Q+
Sbjct: 36 AEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQA 95
Query: 326 RFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALY 385
NV++ + + + AKRRV+ G++LG + + ++ EE++++ +
Sbjct: 96 AQRF------GGNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALIT 149
Query: 386 QQLGRFPGHEKKMLDHFQ 403
+ + +++ +++
Sbjct: 150 EMATAY-EDPSEVVSYYE 166
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein
folding, SRP; 3.35A {Deinococcus radiodurans} PDB:
2aar_7 (1:)
Length = 112
Score = 71.7 bits (176), Expect = 2e-13
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 12/123 (9%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
M + EG K E V +P+ + ++++ + + GFRPGK P I++ GK
Sbjct: 1 MAELIS-KEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAPRKVIENRVGK 59
Query: 61 S-ILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYD 119
+ S+ D +++ + L + ++ + +S + + +
Sbjct: 60 GYVESQVRDRLLETHYSQGLRELGLNLV-DATVDPQDVQSGQ---------AFEFTVKGE 109
Query: 120 ILP 122
P
Sbjct: 110 TYP 112
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome
associated protein, nascent chain, cell division,
isomerase; 2.7A {Escherichia coli} (A:133-254)
Length = 122
Score = 69.2 bits (169), Expect = 1e-12
Identities = 26/120 (21%), Positives = 53/120 (44%)
Query: 143 EKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSAD 202
+ ++D + + K ++ K+ E D+VT+D+T SVD E + G
Sbjct: 2 DADVDGXLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAXGQGR 61
Query: 203 LFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLA 262
+ + G K G++ I+ FPE++ ++L GK + ++K+V + +
Sbjct: 62 XIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFI 121
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima}
PDB: 2nsb_A (A:21-109)
Length = 89
Score = 65.5 bits (160), Expect = 1e-11
Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 23 RLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILSKR 82
+ + ++ + + + I GFR G++P + +K G+ T+D ++ I +
Sbjct: 3 EIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGEEFQEYTLDFLMDLIPDTLK--- 59
Query: 83 DERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILP 122
D + + P +T E + ++ + P
Sbjct: 60 DRKLILSPIVTERELKDV----------TARVVVEVHEEP 89
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle,
ppiase, chaperone; 2.50A {Vibrio cholerae} (A:152-257)
Length = 106
Score = 63.4 bits (154), Expect = 6e-11
Identities = 23/103 (22%), Positives = 50/103 (48%)
Query: 160 FEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQ 219
++ + +E G +V++D+ S+D V E +N +G+ + + +VG G +
Sbjct: 3 WKEVDEAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGME 62
Query: 220 KEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLA 262
I+ FPED+ ++L GK + + +V + +N++
Sbjct: 63 FVIDVTFPEDYHAENLKGKAAKFAIKVNKVEARELPELNDEFV 105
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle,
cell division, chaperone, isomerase, rotamase,
ribonucleoprotein; 3.40A {Thermotoga maritima} PDB:
3gu0_A (X:146-239)
Length = 94
Score = 58.2 bits (141), Expect = 2e-09
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 160 FEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQ 219
E KE +E GD V V+ V + + F + LVG K GD
Sbjct: 3 LEPKEGPAEAGDLVRVNMEVYNEEGKKLTSREYEYVISEDEDRPFVKD---LVGKKKGDV 59
Query: 220 KEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLA 262
EIER + GKK ++EV+ + ++LA
Sbjct: 60 VEIEREY---------EGKKYTYKLEVEEVYKRTLPEIGDELA 93
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR
{Mycoplasma genitalium} (A:)
Length = 113
Score = 57.6 bits (139), Expect = 4e-09
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 1/111 (0%)
Query: 140 EVDEKEIDRQMAEIAKNNVAFEVKETES-EIGDKVTVDYTVSVDNVILEDQSKKNVQFIV 198
++AK + GD +D+T VDN L S +N + +
Sbjct: 2 RGSHHHHHHGSEKLAKTKSTMVDVSDKKLANGDIAIIDFTGIVDNKKLASASAQNYELTI 61
Query: 199 GSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEV 249
GS L+ +K +K + FP D+ +K+L K V +K +
Sbjct: 62 GSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKELQSKPVTFEVVLKAI 112
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo
sapiens} (A:1-136)
Length = 136
Score = 56.6 bits (136), Expect = 6e-09
Identities = 7/116 (6%), Positives = 24/116 (20%), Gaps = 1/116 (0%)
Query: 129 FDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETES-EIGDKVTVDYTVSVDNVILE 187
+ + + + + G V V + + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFD 61
Query: 188 DQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLN 243
+ + + DL + + G+ + ++ N
Sbjct: 62 QRELRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPN 117
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein,
cobalt, copper, cytoplasm, metal- binding, nickel,
rotamase, zinc; NMR {Escherichia coli}
(A:1-70,A:125-196)
Length = 142
Score = 56.4 bits (136), Expect = 7e-09
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Query: 166 ESEIGDKVTVDYTVSVDNVILEDQSK--KNVQFIVGSADLFSETTEILVGLKTGDQKEIE 223
+ V++ Y V ++ +L D+S + ++ G L S L G + GD+ ++
Sbjct: 2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61
Query: 224 RFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLC 277
+ + LAG+ ++ N + + + + C
Sbjct: 62 VGANDAY--GQLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHHDHDHDGC 113
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone
function, two domain protein, rotamase; 2.41A {Thermus
thermophilus} PDB: 3cgn_A (A:1-64,A:121-158)
Length = 102
Score = 56.3 bits (136), Expect = 9e-09
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 166 ESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERF 225
+ VT+ YT+ V+ +L+ + ++ G +L E L G + G+ +
Sbjct: 2 KVGQDKVVTIRYTLQVEGEVLDQ---GELSYLHGHRNLIPGLEEALEGREEGEAFQAHVP 58
Query: 226 FPEDHSIKDLAGKKVRLNFSIKEV 249
+ + LAGK + + +V
Sbjct: 59 AEKAY---GLAGKDLDFQVEVVKV 79
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,
chaperone, rotamase; NMR {Escherichia coli}
(A:1-69,A:125-171)
Length = 116
Score = 52.1 bits (125), Expect = 1e-07
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 166 ESEIGDKVTVDYTVSVDNVILEDQSKKN--VQFIVGSADLFSETTEILVGLKTGDQKEIE 223
+ V++ Y V ++ +L D+S + + ++ G L S L G + GD+ ++
Sbjct: 2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61
Query: 224 RFFPEDHSIKDLAGKKVRLNFSIKEV 249
+ + LAG+ ++ N + +
Sbjct: 62 VGANDAY---GLAGQNLKFNVEVVAI 84
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome
associated protein, nascent chain, cell division,
isomerase; 2.7A {Escherichia coli}
(A:118-132,A:255-301,A:415-432)
Length = 80
Score = 40.4 bits (95), Expect = 5e-04
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 256 VVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVE 315
+V V S +R + ++ + +R +VK Q ++ + D + E
Sbjct: 12 IVEVRFGV--EDGSVEGLRAEVRKNXERELKSAIRNRVKSQAIEGLVKANDIDAKVTEKE 69
Query: 316 NEYNGILQ 323
+N +
Sbjct: 70 TTFNELXN 77
>1ix5_A FKBP; ppiase, isomerase; NMR
{Methanothermococcusthermolithotrophicus}
(A:1-82,A:135-151)
Length = 99
Score = 39.2 bits (91), Expect = 0.001
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 170 GDKVTVDYTVSVDN----------------VILEDQSKKNVQFIVGSADLFSETTEILVG 213
G K+ VDY +++ + D+ + ++F+VG L E ++
Sbjct: 5 GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64
Query: 214 LKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEV 249
++ GD+K ++ + + LAGK + I EV
Sbjct: 65 MEVGDEKTVKIPAEKAY---GLAGKDLVFTIKIIEV 97
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase,
polymorphism, rotamase, structural genomics, structural
genomics consortium, SGC; 1.80A {Homo sapiens} (A:)
Length = 102
Score = 30.4 bits (68), Expect = 0.47
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 166 ESEIGDKVTVDYTVSVDNVILEDQS---KKNVQFIVGSADLFSETTEILVGLKTGDQKEI 222
+S GD + + YT +++ D S + F +G+ + + L+G+ G+++++
Sbjct: 5 KSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKL 64
Query: 223 ERFFPEDHSIKDLAGK 238
+ + K
Sbjct: 65 VIPSELGYGERGAPPK 80
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} (A:)
Length = 135
Score = 28.4 bits (63), Expect = 1.7
Identities = 10/104 (9%), Positives = 29/104 (27%), Gaps = 7/104 (6%)
Query: 143 EKEIDRQMAEIAKNNVAFEV------KETESEIGDKVTVDYTVSVDNVILEDQSKKNVQF 196
+ + + + + + G VTV S++N + + F
Sbjct: 4 GSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE-PELVF 62
Query: 197 IVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240
+G D+ + + G+ + + + +
Sbjct: 63 TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYI 106
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
protein biosynthesis, ligase/RNA complex; HET: ANP;
2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
(A:92-112,A:499-629)
Length = 152
Score = 28.4 bits (63), Expect = 2.1
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 9/84 (10%)
Query: 347 LQYYH-----MLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDH 401
+QY H +L K V KN E + L L +FP ++
Sbjct: 30 IQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAGKD 89
Query: 402 --FQKYPNALAELRAPI--FEDKV 421
EL + F
Sbjct: 90 VKPHLIAWFANELASLFNKFYMDH 113
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
(A:1-127,A:263-348)
Length = 213
Score = 27.6 bits (61), Expect = 3.3
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 375 VTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNA 408
+ +E A+ + K + K P
Sbjct: 164 LLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRI 197
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 27.5 bits (61), Expect = 4.0
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 21/71 (29%)
Query: 290 RQ--KVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDL 347
RQ + QI + VENE L+ ++ E S++ + E
Sbjct: 31 RQLVTREAQI-------------KDWVENE----LEALKLEAEEI--PSEDQNEFLLERT 71
Query: 348 QYYHMLAKRRV 358
+ H A+ ++
Sbjct: 72 REIHNEAESQL 82
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich,
protein transport; 2.00A {Xanthomonas campestris}
(C:1-74)
Length = 74
Score = 26.5 bits (59), Expect = 8.1
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 342 IDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLG 389
+ + DL L +G L + + + V+E + + LG
Sbjct: 20 LKDTDLVRARQLQAE---SGXGLLALLGRLGL-VSERDHAETCAEVLG 63
>2ppn_A FK506-binding protein 1A; high resolution protein structure,
isomerase; 0.92A {Homo sapiens} (A:)
Length = 107
Score = 26.1 bits (57), Expect = 9.2
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 170 GDKVTVDYTVSV-DNVILEDQSKKNVQF--IVGSADLFSETTEILVGLKTGDQKEIERFF 226
G V YT + D + +N F ++G ++ E + + G + ++
Sbjct: 19 GQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 227 PEDHSIKDLAGK 238
+ G
Sbjct: 79 DYAYGATGHPGI 90
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.314 0.133 0.354
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,409,847
Number of extensions: 158186
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 41
Length of query: 473
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 381
Effective length of database: 1,845,989
Effective search space: 703321809
Effective search space used: 703321809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.4 bits)