RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus
Liberibacter asiaticus str. psy62]
(473 letters)
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 185
Score = 90.9 bits (225), Expect = 2e-19
Identities = 34/187 (18%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 257 VNNDLAVRLGFESES--AMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLV 314
+ + R G E S +R + +++ + +R +VK Q ++ + DVP +L+
Sbjct: 1 LTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALI 60
Query: 315 ENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIE 374
++E + + ++ +++ E + + AKRRV+ G++LG + N ++
Sbjct: 61 DSEIDVLRRQAAQRFGGNEKQA------LELPRELFEEQAKRRVVVGLLLGEVIRTNELK 114
Query: 375 VTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDR 434
EE ++ +++ K++++ + K + +R E++ ++ +L ++ ++
Sbjct: 115 ADEERVKGL-IEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEK 173
Query: 435 KVTFDQL 441
+ TF++L
Sbjct: 174 ETTFNEL 180
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio
cholerae [TaxId: 666]}
Length = 113
Score = 78.8 bits (194), Expect = 9e-16
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 145 EIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLF 204
++ + + K ++ + +E G +V++D+ S+D V E +N +G+ +
Sbjct: 2 DVAEMLETLRKQQATWKEVDEAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGRMI 61
Query: 205 SETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSP-LP 254
+ +VG G + I+ FPED+ ++L GK + + +V + LP
Sbjct: 62 PGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKGKAAKFAIKVNKVEARELP 112
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain
{Vibrio cholerae [TaxId: 666]}
Length = 129
Score = 77.7 bits (191), Expect = 2e-15
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQV + EGL+R L++ +P+ + D+ + +I GFR GKVP+ + +YGK
Sbjct: 1 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK 60
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
++ + + E+++ E + K A P+ E DL ++++
Sbjct: 61 AVRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEGK---------DLVFTATFEV 111
Query: 121 LPQIEISSFDDLQVTQ 136
P++E+ +++ V +
Sbjct: 112 YPEVELKGLENIAVEK 127
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 77.3 bits (190), Expect = 3e-15
Identities = 25/126 (19%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQV + ++GL R + + I ++ + + + ++ K I G R GKVP++ + YG
Sbjct: 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGA 60
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
S+ + + +++ + + K A P+ E + D + +++
Sbjct: 61 SVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLG---------EDFTYSVEFEV 111
Query: 121 LPQIEI 126
P++E+
Sbjct: 112 YPEVEL 117
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain
{Vibrio cholerae [TaxId: 666]}
Length = 129
Score = 63.4 bits (154), Expect = 4e-11
Identities = 24/133 (18%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 257 VNNDLAVRLGFESES--AMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLV 314
+N++ R G A++ + +++ + ++ ++K Q ++ + + VP +L+
Sbjct: 1 LNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALI 60
Query: 315 ENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIE 374
+ E N + Q+ NV++ + + + AKRRV+ G++LG + + ++
Sbjct: 61 DQEINVLRQQAAQRFG------GNVEAAAQLPRELFEEQAKRRVVVGLLLGEVIRTHELK 114
Query: 375 VTEEEMQSALYQQ 387
EE++++ + +
Sbjct: 115 ADEEKVKALITEM 127
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 61.9 bits (150), Expect = 1e-10
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 160 FEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQ 219
++ K+ E D+VT+D+T SVD E + +G + + + G K G++
Sbjct: 8 WKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEE 67
Query: 220 KEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSP-LP 254
I+ FPE++ ++L GK + ++K+V LP
Sbjct: 68 FTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELP 103
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma
genitalium [TaxId: 2097]}
Length = 85
Score = 56.6 bits (136), Expect = 4e-09
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 170 GDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPED 229
GD +D+T VDN L S +N + +GS L+ +K +K + FP D
Sbjct: 5 GDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD 64
Query: 230 HSIKDLAGKKVRLNFSIKEV 249
+ +K+L K V +K +
Sbjct: 65 YHVKELQSKPVTFEVVLKAI 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.354
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,708,603
Number of extensions: 83811
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 18
Length of query: 473
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,185,626
Effective search space: 455280384
Effective search space used: 455280384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.1 bits)