BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus
Liberibacter asiaticus str. psy62]
(473 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62]
Length = 473
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK
Sbjct: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI
Sbjct: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
Query: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180
LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS
Sbjct: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180
Query: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240
VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV
Sbjct: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240
Query: 241 RLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDY 300
RLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDY
Sbjct: 241 RLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDY 300
Query: 301 ISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLT 360
ISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLT
Sbjct: 301 ISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLT 360
Query: 361 GIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDK 420
GIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDK
Sbjct: 361 GIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDK 420
Query: 421 VIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETFQSEEAPSEIS 473
VIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETFQSEEAPSEIS
Sbjct: 421 VIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETFQSEEAPSEIS 473
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGDK 172
++E+ + + +AE+ N + FE+ T +G +
Sbjct: 549 MEEQNVSQALAELRNNGLKFEIMNTSFYLGRR 580
>gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 182
Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGD--------KVTVDYTVSVDNVILEDQSKK 192
+D K+I R+M + +NV E ++ + I D +V+++Y V + IL D K
Sbjct: 100 LDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVRAEVSINYRTLVFSKILPDSLKG 159
Query: 193 NV 194
++
Sbjct: 160 DI 161
>gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 85
Score = 24.3 bits (51), Expect = 5.3, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 418 EDKVIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETF 463
E KV DH+ + DRK D+L+ + E L K SK + F
Sbjct: 37 EKKVADHL--NYNAGDRKSNIDKLYKARCKYRKESKLQKLSKSKIF 80
>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 23.9 bits (50), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 15 LDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETID-EIIKE 73
+D+ +P R D FNE ++ + + G G HI LY L++TI+ +
Sbjct: 26 VDLYLP--RKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNS 83
Query: 74 IVPEILS 80
++P L
Sbjct: 84 LLPNGLG 90
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 1 MQVIEKFSEG-------LKRELDVIIPSNRLTDSFNERIEDIRSKANI 41
+ I K ++G LK + II S RL D E +ED+ +++I
Sbjct: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI 58
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.133 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,352
Number of Sequences: 1233
Number of extensions: 12553
Number of successful extensions: 21
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 7
length of query: 473
length of database: 328,796
effective HSP length: 77
effective length of query: 396
effective length of database: 233,855
effective search space: 92606580
effective search space used: 92606580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 40 (20.0 bits)