BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62] (473 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/473 (100%), Positives = 473/473 (100%) Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK Sbjct: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60 Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI Sbjct: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120 Query: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS Sbjct: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180 Query: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV Sbjct: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240 Query: 241 RLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDY 300 RLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDY Sbjct: 241 RLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDY 300 Query: 301 ISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLT 360 ISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLT Sbjct: 301 ISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLT 360 Query: 361 GIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDK 420 GIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDK Sbjct: 361 GIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDK 420 Query: 421 VIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETFQSEEAPSEIS 473 VIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETFQSEEAPSEIS Sbjct: 421 VIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETFQSEEAPSEIS 473 >gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 628 Score = 25.0 bits (53), Expect = 3.1, Method: Compositional matrix adjust. Identities = 8/32 (25%), Positives = 19/32 (59%) Query: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGDK 172 ++E+ + + +AE+ N + FE+ T +G + Sbjct: 549 MEEQNVSQALAELRNNGLKFEIMNTSFYLGRR 580 >gi|254780571|ref|YP_003064984.1| hypothetical protein CLIBASIA_02290 [Candidatus Liberibacter asiaticus str. psy62] Length = 182 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%) Query: 141 VDEKEIDRQMAEIAKNNVAFEVKETESEIGD--------KVTVDYTVSVDNVILEDQSKK 192 +D K+I R+M + +NV E ++ + I D +V+++Y V + IL D K Sbjct: 100 LDNKQIVRKMWNWSSSNVKVEREDIPASIKDASTFIVRAEVSINYRTLVFSKILPDSLKG 159 Query: 193 NV 194 ++ Sbjct: 160 DI 161 >gi|254781126|ref|YP_003065539.1| hypothetical protein CLIBASIA_05140 [Candidatus Liberibacter asiaticus str. psy62] Length = 85 Score = 24.3 bits (51), Expect = 5.3, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 418 EDKVIDHILKSVQIVDRKVTFDQLFDNSSESSPEKLLDKSSKVETF 463 E KV DH+ + DRK D+L+ + E L K SK + F Sbjct: 37 EKKVADHL--NYNAGDRKSNIDKLYKARCKYRKESKLQKLSKSKIF 80 >gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 23.9 bits (50), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 15 LDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETID-EIIKE 73 +D+ +P R D FNE ++ + + G G HI LY L++TI+ + Sbjct: 26 VDLYLP--RKIDLFNEADNNVEYQDDEYGIWSGNYVGLHISRLYETHPLADTINRKTYNS 83 Query: 74 IVPEILS 80 ++P L Sbjct: 84 LLPNGLG 90 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 23.5 bits (49), Expect = 7.6, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Query: 1 MQVIEKFSEG-------LKRELDVIIPSNRLTDSFNERIEDIRSKANI 41 + I K ++G LK + II S RL D E +ED+ +++I Sbjct: 11 LSWIRKLTKGFASTSLKLKEGITDIISSRRLDDGVREELEDLLIRSDI 58 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.314 0.133 0.354 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 294,352 Number of Sequences: 1233 Number of extensions: 12553 Number of successful extensions: 21 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 18 Number of HSP's gapped (non-prelim): 7 length of query: 473 length of database: 328,796 effective HSP length: 77 effective length of query: 396 effective length of database: 233,855 effective search space: 92606580 effective search space used: 92606580 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 40 (20.0 bits)