HHsearch results for GI: 254780898 and protein with PDBid: 1yfo_A
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal transduction, glycoprotein, phosphorylation, signal; 2.25A {Mus musculus} SCOP: c.45.1.2
Probab=98.55 E-value=6.4e-07 Score=62.55 Aligned_cols=122 Identities=9% Similarity=0.060 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCC------CCCHHH----------------------------------HHHHHHCC
Q ss_conf 98999999997499389973787876------544457----------------------------------99999669
Q gi|254780898|r 59 NGTFIEYLKKEYGIKSILNLRGKLPE------SWHKEE----------------------------------EKAANDLG 98 (207)
Q Consensus 59 ~~~~~~~l~k~~GIktIInLr~~~~~------~~~~~e----------------------------------~~~~~~~g 98 (207)
+-.+|..++-+.++++||.|....|. .++..+ ....+..-
T Consensus 110 T~~dFW~MV~e~~~~~IVmLt~~~e~~~~~~~~ywp~~~~~~~g~~~V~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~r~ 189 (302)
T 1yfo_A 110 TVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRL 189 (302)
T ss_dssp GHHHHHHHHHHTTCCEEEECSCSEETTEECSCCCSCSSSEEEETTEEEEEEEEEECSSEEEEEEEEEC---------CEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCCCEEECCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCEE
T ss_conf 39999999874568657984311159833356667767862664489999999982555778999998145556886279
Q ss_pred CEEEEE-ECCCCCCC-CHHHHHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHHHH-----CCCCHHHHHHHHHH
Q ss_conf 849987-52688898-98999999999942----799499982899888999999999998-----39998999996100
Q gi|254780898|r 99 IQLINF-PLSATREL-NDEQIKQLISILKT----APKPLLIHCKSGADRTGLASAVYLYIV-----AHYPKEEAHRQLSM 167 (207)
Q Consensus 99 i~~i~i-p~~~~~~~-~~~~i~~~~~il~~----~~~PVlVHC~aG~~RTG~~~alyli~~-----~g~~~~eA~~el~~ 167 (207)
+.|+++ .+++.+.| +...+..++..+.. .++|++|||.+|.||||+++|+..+.. ...+..++...|+-
T Consensus 190 V~h~~y~~Wpd~~vP~~~~~~l~~i~~v~~~~~~~~~PivVHCs~GvgRtGtfia~~~~l~~l~~~~~vdv~~~v~~lR~ 269 (302)
T 1yfo_A 190 ITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHSERKVDVYGFVSRIRA 269 (302)
T ss_dssp EEEEEECCCCSSSCCSCSHHHHHHHHHHHHHSCTTSCCEEEECSSSSHHHHHHHHHHHHHHHHHHSSEECHHHHHHHHTT
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999676564799898689999999999751557998799827986002099999999999983798689999999986
Q ss_pred -CCCCCCCCCHHHH
Q ss_conf -0264267424599
Q gi|254780898|r 168 -LYGHFPVLKTITM 180 (207)
Q Consensus 168 -~ygh~~~~~~~~l 180 (207)
|.+-+--..+|..
T Consensus 270 qR~~~Vqt~~QY~f 283 (302)
T 1yfo_A 270 QRCQMVQTDMQYVF 283 (302)
T ss_dssp TSTTSSCSHHHHHH
T ss_pred HCCCCCCCHHHHHH
T ss_conf 46665699999999