RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780898|ref|YP_003065311.1| hypothetical protein
CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>gnl|CDD|32512 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 72.4 bits (177), Expect = 8e-14
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 43 NFHAVVPHEIYRSAQPNGT-FIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQL 101
NF ++P YRS QP L +K+I+NLR + + + N +
Sbjct: 46 NFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAI 105
Query: 102 IN---FPLSATRELNDEQIKQLISILKTAPK-PLLIHCKSGADRTGLASAVYLYIVAHYP 157
I + TRE E++ +L+ +L A P+LIHC +G DRTGL +A+Y +V
Sbjct: 106 IMFESYRSFPTREDAAERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSD 165
Query: 158 KEEAHRQL 165
+ A L
Sbjct: 166 ETVAADYL 173
>gnl|CDD|36785 KOG1572, KOG1572, KOG1572, Predicted protein tyrosine phosphatase
[Defense mechanisms].
Length = 249
Score = 49.2 bits (117), Expect = 8e-07
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 43 NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
NF V +YRS P +LK +KSI++L PE + +E GI+L
Sbjct: 59 NFSMVDN-GLYRSGFPRPENFSFLK-TLHLKSIISLC---PEPYPEENLNFLESNGIKLY 113
Query: 103 NFPLSATRELNDEQ---------IKQLISILKTAPKPLLIHCKSGADRTGL 144
+ ++ E K L +L P+LIHCK G RTG
Sbjct: 114 QIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGC 164
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 45.1 bits (107), Expect = 1e-05
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 43 NFHAVVPHEIYRSAQP---NGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGI 99
NF V +YRS+ P N +F+ L+ +K+I++L PE + ++ + I
Sbjct: 6 NFSPVES-GLYRSSYPRANNFSFLRSLR----LKTIISLS---PEPYPQDNLQFLESEHI 57
Query: 100 QLINFPLSATRE-----LNDEQIKQLISILKTAPKPLLIHCKSGADRTGL 144
+L + + ++ + + L +L P+LIHC G RTGL
Sbjct: 58 KLYHIHMEGNKDPFVNIPSHLLRRALKLLLNKDNYPVLIHCNRGKHRTGL 107
>gnl|CDD|36932 KOG1720, KOG1720, KOG1720, Protein tyrosine phosphatase CDC14
[Defense mechanisms].
Length = 225
Score = 40.3 bits (94), Expect = 4e-04
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 59 NGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIK 118
+I+Y K + SI+ L +L ++ D GI + + D +K
Sbjct: 83 PQPYIQYFKNNN-VTSIVRLNKRLYDAKRFT------DAGIDHHDLFFADGSTPTDAIVK 135
Query: 119 QLISILKTAPKP--LLIHCKSGADRTGLASAVYL 150
+ + I++ A K + +HCK+G RTG A YL
Sbjct: 136 EFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYL 169
>gnl|CDD|33256 COG3453, COG3453, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 130
Score = 38.4 bits (89), Expect = 0.001
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 51 EIYRSAQPNGTFIEYLKKEYGIKSILNLR--GKLPESWHKEEEK-AANDLGIQLINFPLS 107
+ S Q + I + G KSI+ R G+ P AA G+ + P++
Sbjct: 9 RLSVSGQISPADIASIAAL-GFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVT 67
Query: 108 ATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGL 144
+ + ++ L A P+L +C+SG L
Sbjct: 68 G-GGITEADVEAFQRALDEAEGPVLAYCRSGTRSLNL 103
>gnl|CDD|144397 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 35.3 bits (82), Expect = 0.011
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 66 LKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSA-TRELNDEQIKQLISIL 124
++ GI ++N+ ++P S LGI + + + ++ L + + I
Sbjct: 13 FLEKLGITHVINVTREVPNSNLNSGI---LYLGIPVEDNHETNISKYLP--EAVEFIDDA 67
Query: 125 KTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHF 172
+L+HC++G R+ YL + EA+ +
Sbjct: 68 IQKGGKVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPII 115
>gnl|CDD|113060 pfam04273, DUF442, Putative phosphatase (DUF442). Although this
domain is uncharacterized it seems likely that it
performs a phosphatase function.
Length = 110
Score = 34.4 bits (79), Expect = 0.025
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 68 KEYGIKSILNLR--GKLPES-WHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISIL 124
G +S++N R G+ P + E+ AA G+ P+ + ++ + ++ L
Sbjct: 24 ARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLAYRFIPVISG-QITEADVEAFQRAL 82
Query: 125 KTAPKPLLIHCKSGA 139
A P+L HC+SG
Sbjct: 83 AAAEGPVLAHCRSGT 97
>gnl|CDD|36928 KOG1716, KOG1716, KOG1716, Dual specificity phosphatase [Defense
mechanisms].
Length = 285
Score = 33.7 bits (76), Expect = 0.036
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 48 VPHEIYRSAQPNGTFIEYLKKEYGIKSILNL-RGKLPESWHKEEEKAANDLGIQLINFPL 106
+ +Y +Q + + L K+ GI +LN+ + KE+ L I + + P
Sbjct: 78 ILPNLYLGSQGVASDPD-LLKKLGITHVLNVSSSCPNPRFLKEQGI--KYLRIPVEDNPS 134
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLS 166
+ + E I I + +L+HC++G R+ YL E+A+ +
Sbjct: 135 TDILQHFPEAIS-FIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVK 193
Query: 167 M 167
Sbjct: 194 S 194
>gnl|CDD|32569 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 33.5 bits (76), Expect = 0.039
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 62 FIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLI 121
I+ + I L EE GIQ+++ P+ + E + +++
Sbjct: 40 GIQTILSLINALVIEELELLGALYNVAIEEND----GIQVLHLPILDGTVPDLEDLDKIV 95
Query: 122 SILKTA---PKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEA 161
++ A K +++HC+ G R+G A YL + +
Sbjct: 96 DFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADE 138
>gnl|CDD|29029 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like..
Length = 139
Score = 30.6 bits (69), Expect = 0.32
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
+ +Y + P + E LKK GI +LN+ + + + P+
Sbjct: 4 EITPGLYLGSYPAASDKELLKK-LGITHVLNV-------AKEVPNENLFLSDFNYLYVPI 55
Query: 107 SATRELND----EQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAH 162
+ ++ I + +L+HC +G R+ YL EA+
Sbjct: 56 LDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAY 115
Query: 163 R 163
Sbjct: 116 E 116
>gnl|CDD|37165 KOG1954, KOG1954, KOG1954, Endocytosis/signaling protein EHD1
[Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 532
Score = 30.3 bits (68), Expect = 0.38
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 108 ATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSM 167
A R L + + + L L+T P+ + + + + V+ YI++ KE +
Sbjct: 266 ANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKKE-----MPS 320
Query: 168 LYGHFPVLKTITMDI--TFEKITQLYPNNVSKGDTEQP 203
++G K + ++ +EK+ + + N+S GD
Sbjct: 321 VFGKEKKKKRLIDNLIDIYEKLQREH--NISPGDFPDV 356
>gnl|CDD|36929 KOG1717, KOG1717, KOG1717, Dual specificity phosphatase [Defense
mechanisms].
Length = 343
Score = 29.0 bits (64), Expect = 0.97
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 68 KEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELN-DEQIKQLISILKT 126
K+YGIK ++N+ LP ++ E P+S N + + IS +
Sbjct: 194 KKYGIKYVINVTPNLPNNFENNGE-------FIYKQIPISDHASQNLSQFFPEAISFIDE 246
Query: 127 APKP---LLIHCKSGADRTGLASAVYL 150
A +L+HC +G R+ + YL
Sbjct: 247 ARSKNCGVLVHCLAGISRSVTVTVAYL 273
>gnl|CDD|145399 pfam02219, MTHFR, Methylenetetrahydrofolate reductase. This family
includes the 5,10-methylenetetrahydrofolate reductase
EC:1.7.99.5 from bacteria and methylenetetrahydrofolate
reductase EC: 1.5.1.20 from eukaryotes. The structure
for this domain is known to be a TIM barrel.
Length = 286
Score = 28.8 bits (65), Expect = 0.99
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 68 KEYGIKSILNLRGKLP---ESWHKEEE--KAANDLGIQLIN 103
K GI++IL LRG P + W K E K A DL ++LI
Sbjct: 94 KALGIRNILALRGDPPKGGDHWEKPEGGFKYALDL-VRLIR 133
>gnl|CDD|34925 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 28.8 bits (64), Expect = 1.0
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 97 LGIQLINFPLSATRELNDEQIKQLISILKTAP--KPLLIHCKSGADRTGLASAVYLYIVA 154
L I P + ++ +I P PLLIHC +G R+ +A + +A
Sbjct: 60 LHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRS--TAAALIAALA 117
Query: 155 HYPKEEAHR 163
P +
Sbjct: 118 LAPDMDETE 126
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 27.8 bits (62), Expect = 2.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 163 RQLSMLYGHFPVLKTITMDITFEKITQL 190
R L++ YG LK I +DI K+T L
Sbjct: 11 RDLNLYYGDKHALKDINLDIPKNKVTAL 38
>gnl|CDD|39429 KOG4228, KOG4228, KOG4228, Protein tyrosine phosphatase [Signal
transduction mechanisms].
Length = 1087
Score = 27.3 bits (60), Expect = 2.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 130 PLLIHCKSGADRTGL 144
P+++HC +G RTG
Sbjct: 732 PIVVHCSAGVGRTGC 746
>gnl|CDD|144247 pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese has an
internal duplication. This Pfam represents a single copy
of this duplicated domain. The domain is found as a
single copy in other proteins, including phosphatases
and ubiquitin C-terminal hydrolases.
Length = 106
Score = 27.5 bits (61), Expect = 3.0
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 102 INFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLY 151
+N PL E + + K ++++C+SG +R+G A+A+ L
Sbjct: 34 VNIPLPLPSLDKLESELEELGKKLDKDKTIVVYCESG-NRSGQAAALLLA 82
>gnl|CDD|28929 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active..
Length = 231
Score = 27.1 bits (60), Expect = 3.9
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 128 PKPLLIHCKSGADRTG 143
P+++HC +G RTG
Sbjct: 166 SGPIVVHCSAGVGRTG 181
>gnl|CDD|30058 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
(ALN); L-Hydantoinases are a member of the
dihydropyrimidinase family, which catalyzes the
reversible hydrolytic ring opening of dihydropyrimidines
and hydantoins (five-membered cyclic diamides used in
biotechnology). But L-HYDs differ by having an L-enantio
specificity and by lacking activity on possible natural
substrates such as dihydropyrimidines. Allantoinase
catalyzes the hydrolytic cleavage of the five-member
ring of allantoin (5-ureidohydantoin) to form allantoic
acid..
Length = 447
Score = 26.8 bits (59), Expect = 4.2
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 110 RELNDEQIKQLISILKTAPKPLLIHCKS 137
++DEQ+++ + L L +H ++
Sbjct: 157 PAVDDEQLEEAMKELAKTGSVLAVHAEN 184
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding
component of ABC (ATPase Binding Cassette)-type
transport systems that are predicted to be involved in
uptake of amino acids. This subgroup includes the type
I periplasmic binding component of ABC (ATPase Binding
Cassette)-type transport systems that are predicted to
be involved in uptake of amino acids. Members of this
subgroup are sequence-similar to members of the family
of ABC-type hydrophobic amino acid transporters (HAAT),
such as leucine-isoleucine-valine-binding protein
(LIVBP); their ligand specificity has not been
determined experimentally, however.
Length = 312
Score = 26.8 bits (60), Expect = 4.3
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 52 IYRSAQPN----GTFIEYLKKEYGIKSI--LNLRGKLPESWHKEEEKAANDLGIQLI 102
++++ Q + + +KK G+K++ + ES KE + A GI+++
Sbjct: 110 VFKTPQNDRLMAEAILADMKKR-GVKTVAFIGFSDAYGESGLKELKALAPKYGIEVV 165
>gnl|CDD|30817 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 26.7 bits (59), Expect = 4.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFPVLKTITMDITFEKITQLYPNNVSKG 198
I+A P E R+L++++G +P+L T E + + + G
Sbjct: 401 IIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESG 447
>gnl|CDD|36011 KOG0792, KOG0792, KOG0792, Protein tyrosine phosphatase PTPMEG,
contains FERM domain [Signal transduction mechanisms].
Length = 1144
Score = 26.6 bits (58), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 130 PLLIHCKSGADRTG--LASAVYLYIVAH 155
P+L+HC +G RTG + L ++ H
Sbjct: 1065 PILVHCSAGIGRTGVLILMETALCLLEH 1092
>gnl|CDD|37494 KOG2283, KOG2283, KOG2283, Clathrin coat dissociation kinase
GAK/PTEN/Auxilin and related tyrosine phosphatases
[Signal transduction mechanisms, General function
prediction only].
Length = 434
Score = 26.6 bits (58), Expect = 5.7
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 133 IHCKSGADRTGLASAVYLYIVAHYPK-EEAHRQLSMLYGHFPVLKTIT 179
+HCK+G RTG+ YL EEA + K +T
Sbjct: 112 VHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVT 159
>gnl|CDD|143879 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 234
Score = 26.5 bits (59), Expect = 5.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 125 KTAPKPLLIHCKSGADRTG 143
P+++HC +G RTG
Sbjct: 166 PPRSGPIVVHCSAGVGRTG 184
>gnl|CDD|119440 cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the
asymmetrical cyclization of tetrapyrrole (linear) to
uroporphyrinogen-III, the fourth step in the
biosynthesis of heme. This ubiquitous enzyme is present
in eukaryotes, bacteria and archaea. Mutations in the
human uroporphyrinogen-III synthase gene cause
congenital erythropoietic porphyria, a recessive inborn
error of metabolism also known as Gunther disease.
Length = 239
Score = 26.5 bits (59), Expect = 6.0
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 75 ILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTA 127
+L R P E LG +++ PL L+D ++ ++ L
Sbjct: 1 VLVTR---PRPQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEY 50
>gnl|CDD|144675 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.
Length = 216
Score = 26.0 bits (58), Expect = 6.7
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 115 EQIKQLISILKTAPKPLLIHCK--SGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHF 172
EQ + L + +PL +H K +G R G + +L L HF
Sbjct: 97 EQAEALSAAAAKLGRPLRVHLKVDTGMGRLGFTPEELPALAEA--LALPGLRLEGLMTHF 154
Query: 173 P 173
Sbjct: 155 A 155
>gnl|CDD|28903 cd00019, AP2Ec, AP endonuclease family 2; These endonucleases play
a role in DNA repair. Cleave phosphodiester bonds at
apurinic or apyrimidinic sites; the alignment also
contains hexulose-6-phosphate isomerases, enzymes that
catalyze the epimerization of D-arabino-6-hexulose
3-phosphate to D-fructose 6-phosphate, via cleaving the
phosphoesterbond with the sugar. .
Length = 279
Score = 26.1 bits (57), Expect = 7.8
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 75 ILNLRGKLPESWHK------EEEKAANDLGIQLINF-PLSATRELNDEQIKQLISILKTA 127
++NL E K +E + +LGI+L+ F P S + +E +K++I L
Sbjct: 69 LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNEL 128
Query: 128 PKPLLIH 134
Sbjct: 129 IDKAETK 135
>gnl|CDD|37597 KOG2386, KOG2386, KOG2386, mRNA capping enzyme, guanylyltransferase
(alpha) subunit [RNA processing and modification].
Length = 393
Score = 26.1 bits (57), Expect = 8.0
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 104 FPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHR 163
P + + + +K + K + + +HC G +RTG YL V Y EA +
Sbjct: 100 VPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIK 159
Query: 164 QLSMLYGHF 172
+ +
Sbjct: 160 RFADARPPG 168
>gnl|CDD|145647 pfam02608, Bmp, Basic membrane protein. This is a family of basic
membrane lipoproteins form Borrelia and various putative
lipoproteins form other bacteria. All of these proteins
are outer membrane proteins and are thus antigenic in
nature when possessed by the pathogenic members of the
family. One protein, Bacillus subtilis med, is a
transcriptional activator.
Length = 302
Score = 25.8 bits (57), Expect = 8.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 63 IEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
I KKE+ I+ I +L + ++ K D G LI
Sbjct: 25 IRRFKKEFNIELIYKESSELQDEDYEALLKLLKDQGYDLI 64
>gnl|CDD|35784 KOG0564, KOG0564, KOG0564, 5,10-methylenetetrahydrofolate reductase
[Amino acid transport and metabolism].
Length = 590
Score = 25.7 bits (56), Expect = 9.2
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 68 KEYGIKSILNLRGKLP---ESWHKEE 90
K GI++IL LRG P + W +EE
Sbjct: 102 KALGIRNILALRGDPPIGQDKWVEEE 127
>gnl|CDD|36931 KOG1719, KOG1719, KOG1719, Dual specificity phosphatase [Defense
mechanisms].
Length = 183
Score = 25.7 bits (56), Expect = 9.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 123 ILKTAP--KPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
I K A K + +HCK+G R+ A YL ++ E A +
Sbjct: 102 IHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHV 146
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.399
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,452,628
Number of extensions: 123651
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 44
Length of query: 207
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,340,536
Effective search space: 512183248
Effective search space used: 512183248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)