RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780898|ref|YP_003065311.1| hypothetical protein
CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>gnl|CDD|178328 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 43.0 bits (101), Expect = 6e-05
Identities = 26/142 (18%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 69 EYGIKSILNLRGK-LPESWHKEEEKAANDLG-IQLINFPLSATRELNDEQIKQLISILK- 125
E G K+I++LR + + +++++ A G I+++ P+ + EQ+++ S++
Sbjct: 279 EKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSD 338
Query: 126 TAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHFPVLKTITMDITFE 185
++ KP+ +H K G RT + + + + + + +T ++ T +
Sbjct: 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLLGQNSVVNGNGKLDQETGSLQETND 398
Query: 186 KITQLYPNNVSKGDTEQPMNAT 207
K + N G++ + T
Sbjct: 399 KDSS--SNGSESGESCSIKDET 418
>gnl|CDD|128492 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 32.6 bits (75), Expect = 0.077
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 14/107 (13%)
Query: 48 VPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLS 107
+ +Y + + + L K+ GI ++N+ E N G + P+
Sbjct: 4 ILPHLYLGSYSSALNLA-LLKKLGITHVINV---------TNEVPNLNKKGFTYLGVPIL 53
Query: 108 ATRELND----EQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYL 150
E + + I + +L+HC++G R+ YL
Sbjct: 54 DNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYL 100
>gnl|CDD|165105 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 31.8 bits (72), Expect = 0.13
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 100 QLINFPL---SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTG 143
+ +NF L +EL E ++ I + P P+++HC +G RT
Sbjct: 198 EFLNFVLEVRQCQKELAQESLQ--IGHNRLQPPPIVVHCNAGLGRTP 242
>gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit;
Reviewed.
Length = 566
Score = 30.2 bits (68), Expect = 0.42
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 102 INFP-LSATRELNDEQIKQLISILKTAPKPLLI 133
+N P T E ND QIK+++ L A KP+++
Sbjct: 184 VNLPSYQPTLEPNDMQIKKILKQLSKAKKPVIL 216
>gnl|CDD|128683 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 29.6 bits (67), Expect = 0.60
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 129 KPLLIHCKSGADRTG-LASAVYLY 151
P+++HC +G RTG + L
Sbjct: 40 GPVVVHCSAGVGRTGTFVALDILL 63
>gnl|CDD|128329 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 29.6 bits (67), Expect = 0.60
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 129 KPLLIHCKSGADRTG-LASAVYLY 151
P+++HC +G RTG + L
Sbjct: 40 GPVVVHCSAGVGRTGTFVALDILL 63
>gnl|CDD|128491 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 258
Score = 29.5 bits (67), Expect = 0.60
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 115 EQIKQLISILKTAPKPLLIHCKSGADRTG 143
+ ++ + T+ P+++HC +G RTG
Sbjct: 180 DLVRAVRKSQSTSTGPIVVHCSAGVGRTG 208
>gnl|CDD|183984 PRK13340, PRK13340, alanine racemase; Reviewed.
Length = 406
Score = 28.8 bits (65), Expect = 1.1
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 20/69 (28%)
Query: 113 NDEQIKQLISILKTAPKPLLIHCK---SGADRTGL--------------ASAVYLYIVA- 154
+DEQ K L +I K KP+ IH G R GL A+ L IV
Sbjct: 140 DDEQAKLLAAIAKKNGKPIDIHLALNSGGMSRNGLDMSTARGKWEALRIATLPSLGIVGI 199
Query: 155 --HYPKEEA 161
H+P E+
Sbjct: 200 MTHFPNEDE 208
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 28.4 bits (64), Expect = 1.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 21/58 (36%)
Query: 163 RQLSMLYGHFPVLKTITMDI---------------------TFEKITQLYPNNVSKGD 199
R L+ YG F LK I +DI TF ++ +LYP ++G+
Sbjct: 17 RNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGE 74
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 163 RQLSMLYGHFPVLKTITMDITFEKITQL 190
+ L + YG F LK I +DI ++T L
Sbjct: 7 KDLDLFYGDFQALKKINLDIEENQVTAL 34
>gnl|CDD|161942 TIGR00587, nfo, apurinic endonuclease (APN1). All proteins in this
family for which functions are known are 5' AP
endonculeases that are used in base excision repair and
the repair of abasic sites in DNA.This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 274
Score = 28.1 bits (63), Expect = 1.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 89 EEEKAANDLGIQLINFPLSATRELNDEQ-IKQLISILKTAPKP 130
EE K LGI L NF + + ++E+ + LI L K
Sbjct: 92 EELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKE 134
>gnl|CDD|130311 TIGR01244, TIGR01244, conserved hypothetical protein TIGR01244. No
member of this family is characterized. The member from
Xylella fastidiosa is a longer protein with an
N-terminal region described by this model, followed by a
metallo-beta-lactamase family domain and an additional
C-terminal region. Members scoring above the trusted
cutoff are limited to the proteobacteria.
Length = 135
Score = 27.6 bits (61), Expect = 2.5
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 71 GIKSILNLR--GKLPESWHKEE-EKAANDLGIQLINFPLSATRELNDEQIKQLISILKTA 127
G K+++N R + + + AA G+ + P++A ++ + ++ + + A
Sbjct: 27 GFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA-GDITPDDVETFRAAIGAA 85
Query: 128 PKPLLIHCKSG 138
P+L +C+SG
Sbjct: 86 EGPVLAYCRSG 96
>gnl|CDD|119193 pfam10673, DUF2487, Protein of unknown function (DUF2487). This is
a bacterial family of uncharacterized proteins.
Length = 143
Score = 27.7 bits (62), Expect = 2.5
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 84 ESWHKEEEKAANDL----GIQLINFPLSATRELNDEQIKQLISIL 124
SW +EEE+ DL I L + S R++ D+Q+KQL+++L
Sbjct: 95 SSWKEEEEELEGDLFWLPAIPLEHMSDSLKRKIVDDQVKQLLNLL 139
>gnl|CDD|184109 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 27.5 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 82 LPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLIS 122
+PES H +KAA+ LG++L PL ++ + ++ LI
Sbjct: 109 VPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLID 149
>gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 27.3 bits (61), Expect = 2.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 148 VYLYIVAHYPKEEAHRQLSMLYGHFPVLKTITMDITFE 185
VYL I + P EE R+L +Y F L + DIT E
Sbjct: 344 VYLDIASRLPAEEIKRRLPSMYHQFKELADV--DITKE 379
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 27.6 bits (62), Expect = 2.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 163 RQLSMLYGHFPVLKTITMDITFEKITQL 190
L++ YG LK I +DI ++T L
Sbjct: 5 ENLNLFYGEKEALKNINLDIPKNQVTAL 32
>gnl|CDD|185330 PRK15432, PRK15432, autoinducer 2 ABC transporter permease LsrC;
Provisional.
Length = 344
Score = 27.0 bits (60), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 20 LGVLVLCAVSLGLYFLTITTFTQNFHAV 47
+G L L + + L T F ++F+A
Sbjct: 162 IGWLTLILILAMAWLLAKTAFGRSFYAT 189
>gnl|CDD|177772 PLN00177, PLN00177, sulfite oxidase; Provisional.
Length = 393
Score = 27.1 bits (60), Expect = 3.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 72 IKSILNLRGKLPESWHK 88
++SI NLRG L SWH+
Sbjct: 367 VESIWNLRGILNTSWHR 383
>gnl|CDD|161992 TIGR00676, fadh2, 5,10-methylenetetrahydrofolate reductase,
prokaryotic form. This protein is an FAD-containing
flavoprotein.
Length = 272
Score = 27.2 bits (61), Expect = 3.5
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 63 IEYLKKEY---GIKSILNLRGKLPESWHKEEEKA---ANDLGIQLIN 103
I + +EY GI+ IL LRG P+ A++L ++ I
Sbjct: 75 IREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASEL-VEFIR 120
>gnl|CDD|129583 TIGR00492, alr, alanine racemase. This enzyme interconverts
L-alanine and D-alanine. Its primary function is to
generate D-alanine for cell wall formation. With
D-alanine-D-alanine ligase, it makes up the D-alanine
branch of the peptidoglycan biosynthetic route. It is a
monomer with one pyridoxal phosphate per subunit. In E.
coli, the ortholog is duplicated so that a second
isozyme, DadX, is present. DadX, a paralog of the
biosynthetic Alr, is induced by D- or L-alanine and is
involved in catabolism.
Length = 367
Score = 26.9 bits (60), Expect = 3.9
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 113 NDEQIKQLISILKTAPKPLLIHCK--SGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYG 170
+ EQ++ L L PK L +H K +G +R G+ V + + +L ++
Sbjct: 102 SVEQLQALEEALLKEPKRLKVHLKIDTGMNRLGVKPDEAALFVQKLRQLKKFLELEGIFS 161
Query: 171 HFPV---LKTITMDITFEKITQL 190
HF KT T E+
Sbjct: 162 HFATADEPKTGTTQKQIERFNSF 184
>gnl|CDD|151053 pfam10493, Rod_C, Rough deal protein C-terminal region. Rod, the
Rough deal protein, displays a dynamic intracellular
staining pattern, localising first to kinetochores in
pro-metaphase, but moving to kinetochore microtubules at
metaphase. Early in anaphase the protein is once again
restricted to the kinetochores, where it persists until
the end of telophase. This behaviour is in all respects
similar to that described for ZW10, and indeed the two
proteins function together, localisation of each
depending upon the other. These two proteins are found
at the kinetochore in complex with a third, Zwilch, in
both flies and humans. The C-terminus is the most
conserved part of the protein. During pro-metaphase, the
ZW10-Rod complex, dynein/dynactin, and Mad2 all
accumulate on unattached kinetochores; microtubule
capture leads to Mad2 depletion as it is carried off by
dynein/dynactin; ZW10-Rod complex accumulation
continues, replenishing kinetochore dynein. The
continuing recruitment of the ZW10-Rod complex during
metaphase may serve to maintain adequate dynein/dynactin
complex on kinetochores for assisting chromatid movement
during anaphase. The ZW10-Rod complex acts as a bridge
whose association with Zwint-1 links Mad1 and Mad2,
components that are directly responsible for generating
the diffusible 'wait anaphase' signal, to a structural,
inner kinetochore complex containing Mis12 and
KNL-1AF15q14, the last of which has been proved to be
essential for kinetochore assembly in C. elegans.
Removal of ZW10 or Rod inactivates the mitotic
checkpoint.
Length = 555
Score = 26.7 bits (59), Expect = 4.2
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 25/143 (17%)
Query: 64 EYLKKEYGIKSILNLRGKLPE-----SWHKEEEKAANDLGIQLINFPLSATRELNDEQIK 118
+Y SI + +L E SWH + + A I L +++ +
Sbjct: 59 DYFCMSAVKNSIKEYKPQLLEKAPAESWHLQPKNNAFLQSI------LRYVDSVSNPEWA 112
Query: 119 QLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHY----PKEEAHRQLSMLYGHFPV 174
I T P GAD+ + EA ++ + +P+
Sbjct: 113 LAILYYITNEAP------DGADQVEALYFCLKFAEKWKKNLSGDPEAREKIEKIKRKYPI 166
Query: 175 LKT----ITMDITFEKITQLYPN 193
KT I + EK+ +L N
Sbjct: 167 SKTQHLLIQYGLNDEKLLRLIGN 189
>gnl|CDD|180207 PRK05696, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 170
Score = 26.8 bits (60), Expect = 4.5
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 6 KPRKNLLIFYIKILLGVLVLCAVSLGLYFL 35
K +K L+I I++GVL+ +F
Sbjct: 15 KSKKKLIII---IVIGVLLALGGGGAAWFF 41
>gnl|CDD|131767 TIGR02720, pyruv_oxi_spxB, pyruvate oxidase. Members of this
family are examples of pyruvate oxidase (EC 1.2.3.3), an
enzyme with FAD and TPP as cofactors that catalyzes the
reaction pyruvate + phosphate + O2 + H2O = acetyl
phosphate + CO2 + H2O2. It should not be confused with
pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in
E. coli PoxB, although the E. coli enzyme is closely
homologous and has pyruvate oxidase as an alternate
name.
Length = 575
Score = 26.7 bits (59), Expect = 4.5
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 100 QLINFPLSATRELNDEQIKQLISILKTAPKPLLIHC-----KSGADRTGLASAVYLYIVA 154
Q P + E + + + LK A +P +I+ K+G + L+ + + +++
Sbjct: 178 QTPLLP-----APDVEAVTRAVQTLKAAERP-VIYYGIGARKAGEELEALSEKLKIPLIS 231
Query: 155 HYPKEEA 161
+
Sbjct: 232 TGLAKGI 238
>gnl|CDD|180540 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 26.4 bits (59), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFP--VLKTITMDITFE 185
I+A P E R+L +++G P VL + D TF+
Sbjct: 403 ILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFD 438
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 26.1 bits (57), Expect = 6.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 130 PLLIHCKSGADRTGLASAV 148
P+++HC G +TG+ AV
Sbjct: 231 PIVVHCSDGVGKTGIFCAV 249
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 25.8 bits (57), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 113 NDEQIKQLISILKTAPKPLL 132
N QIK+ +K A KPL
Sbjct: 189 NSRQIKKAAEAIKEAKKPLF 208
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 26.1 bits (58), Expect = 7.2
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 63 IEYLKKEYGIKSILNLRGKLPE-SWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLI 121
+E LK I +IL++ + W EE I +N P+ Q+ Q I
Sbjct: 113 LEKLKSN-KITAILDVTAEFDGLDWSLTEED------IDYLNIPILDHSVPTLAQLNQAI 165
Query: 122 SILKT---APKPLLIHCKSGADRTGLASAVYL 150
+ + A K +++HC G R+ L A YL
Sbjct: 166 NWIHRQVRANKSVVVHCALGRGRSVLVLAAYL 197
>gnl|CDD|172386 PRK13865, PRK13865, type IV secretion system protein VirB8;
Provisional.
Length = 229
Score = 26.0 bits (57), Expect = 7.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 162 HRQLSMLYGHFPVLKTITMDITFEKITQL 190
+++ + G PV+ T T + +EK+T L
Sbjct: 177 YKRTLTMDGKMPVVSTWTATVRYEKVTSL 205
>gnl|CDD|185417 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 25.8 bits (57), Expect = 8.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 63 IEYLKKEYGIKSILNLRG 80
+E K Y IKSI NL G
Sbjct: 305 VEIKGKTYPIKSIRNLNG 322
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.399
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,298,589
Number of extensions: 201612
Number of successful extensions: 606
Number of sequences better than 10.0: 1
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 46
Length of query: 207
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,071,361
Effective search space: 480420598
Effective search space used: 480420598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)