RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780898|ref|YP_003065311.1| hypothetical protein
CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
phosphatase, carbohydrate BIND hydrolase; 2.40A
{Arabidopsis thaliana}
Length = 294
Score = 75.7 bits (186), Expect = 7e-15
Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 13/134 (9%)
Query: 43 NFHAVVPHEIYRSAQP-NGTFIEYLKKEYGIKSILNLRGKLPES-----WHKEEEKAAND 96
N++ + P + + ++ L+K G+K+I L+ + A
Sbjct: 12 NYNFIRPD-LIVGSCLQTPEDVDKLRK-IGVKTIFCLQQDPDLEYFGVDISSIQAYAKKY 69
Query: 97 LGIQLINFPLSAT-----RELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLY 151
IQ I + R + L +K +H +G R + Y++
Sbjct: 70 SDIQHIRCEIRDFDAFDLRMRLPAVVGTLYKAVKRNGGVTYVHSTAGMGRAPAVALTYMF 129
Query: 152 IVAHYPKEEAHRQL 165
V Y EAH+ L
Sbjct: 130 WVQGYKLMEAHKLL 143
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 75.2 bits (184), Expect = 1e-14
Identities = 22/138 (15%), Positives = 47/138 (34%), Gaps = 6/138 (4%)
Query: 43 NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
P ++ S PN LK + G+ ++NL + H +E K G+ +
Sbjct: 14 ALQQQAP-QLLSSGLPNEQQFSLLK-QAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYV 71
Query: 103 NFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAH 162
P+ ++ ++ + K +L+HC + R + +Y + A
Sbjct: 72 YIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCLANY-RASAFAYLYQ-LKQGQNPNMAQ 129
Query: 163 RQLSM--LYGHFPVLKTI 178
+P + +
Sbjct: 130 TMTPWNDELAIYPKWQAL 147
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG,
center for eukaryotic structural genomics,
phosphoprotein phosphatase; 3.30A {Arabidopsis thaliana}
SCOP: c.45.1.1 PDB: 2q47_A
Length = 151
Score = 68.3 bits (166), Expect = 1e-12
Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 43 NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
NF V I+RS P+ +L+ G++SI+ L PE + + + GI+L
Sbjct: 7 NFSMVDNG-IFRSGFPDSANFSFLQT-LGLRSIIYLC---PEPYPESNLQFLKSNGIRLF 61
Query: 103 NFPLSATRELNDEQIKQLI-----SILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYP 157
F + +E I +L P+LIHCK G RTG + +
Sbjct: 62 QFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKL-QKWC 120
Query: 158 KEEAHRQLSMLYGHFPVLKTITMDITF 184
+ Y F K D F
Sbjct: 121 LTSIFDE----YQRFAAAKARVSDQRF 143
>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.41A
{Neisseria meningitidis Z2491}
Length = 156
Score = 65.5 bits (159), Expect = 8e-12
Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Query: 51 EIYRSAQPNGTFIEYLKKEYGIKSILNLRG---KLPESWHKEEEKAANDLGIQLINFPLS 107
+Y S Q E + + GIK+I+ R + + + ++ G+ +
Sbjct: 23 HLYISPQLTKADAEQIAQL-GIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPV 81
Query: 108 ATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQ 164
R++ ++ ++ A P+L +C++G R L P +E R+
Sbjct: 82 TARDIQKHDVETFRQLIGQAEYPVLAYCRTGT-RCSLLWGFRR-AAEGMPVDEIIRR 136
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 59.3 bits (143), Expect = 6e-10
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 43 NFHAVVPHEIYRSAQPNG-TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQL 101
NF V+P + A P ++L G++ +++L E + G+ L
Sbjct: 8 NFSWVLPGRLAGLALPRLPAHYQFLLD-LGVRHLVSLT----ERGPPHSDSCP---GLTL 59
Query: 102 INFPLSATRELNDEQIKQLISILKTAPK---PLLIHCKSGADRTGLASAVYLYIVAHYPK 158
+ +QI + + I+ A + +HC G RTG A YL
Sbjct: 60 HRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLAA 119
Query: 159 EEAHRQL 165
+A ++
Sbjct: 120 GDAIAEI 126
>2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine
phosphatase, phytase, P-loop, cysteine-sulfonic acid,
oxidized thiol.; 1.70A {Selenomonas ruminantium} SCOP:
c.45.1.4 PDB: 2psz_A 3d1h_A 3d1o_A 3d1q_A 1u24_A 1u25_A*
1u26_A* 2b4o_A 2b4p_A 2b4u_A
Length = 340
Score = 54.2 bits (130), Expect = 2e-08
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 80 GKLPESWH-------KEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTAPK--P 130
KLPE + E++ A G++ + E I + ++ +T P+
Sbjct: 182 HKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAW 241
Query: 131 LLIHCKSGADRTGLASAVYLYIVAHYPKEEAH----RQLSMLYGHFPVLKTITMDITFEK 186
L HC++G RT + + P RQ + ++ T D K
Sbjct: 242 LHFHCEAGVGRTTAFMV--MTDMLKNPSVSLKDILYRQHEIGGFYYGEFPIKTKDKDSWK 299
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 53.7 bits (128), Expect = 3e-08
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 45 HAVVPHEIYRSAQPNG-TFIEYLKKEYGIKSILNLR--GKLPESWHKEE--EKAANDLGI 99
+ V I S P I +KE G+K +L L ++ ESW ++ G+
Sbjct: 2 YWVRRKTIGGSGLPYTENEILEWRKE-GVKRVLVLPEDWEIEESWGDKDYYLSILKKNGL 60
Query: 100 QLINFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKE 159
Q ++ P+ +D Q ++ L + + L+HC G RTG A YL + E
Sbjct: 61 QPLHIPIPDGGVPSDSQFLTIMKWLLSEKEGNLVHCVGGIGRTGTILASYLILTEGLEVE 120
Query: 160 EAHRQL 165
A ++
Sbjct: 121 SAIDEV 126
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 52.3 bits (125), Expect = 8e-08
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 18/132 (13%)
Query: 24 VLCAVSLGLYFLTITTFTQNFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLP 83
V C+ LGL L F ++ R+ Q + E LK GI+ I +
Sbjct: 37 VNCSQFLGLCALPGCKF---------KDVRRNVQKD---TEELKSC-GIQDIFVFCTRGE 83
Query: 84 ESWHK--EEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTA---PKPLLIHCKSG 138
S ++ GI + P++ + +++ L T + LIH G
Sbjct: 84 LSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKTLIHSYGG 143
Query: 139 ADRTGLASAVYL 150
R+ L +A L
Sbjct: 144 LGRSCLVAACLL 155
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle,
hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1
c.45.1.1 PDB: 1ohc_A 1ohd_A
Length = 348
Score = 51.5 bits (123), Expect = 1e-07
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 7/104 (6%)
Query: 62 FIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLI 121
+I+Y K + + +I+ L + + A G + + D +K+ +
Sbjct: 210 YIQYFKN-HNVTTIIRLNK---RMYDAKRFTDA---GFDHHDLFFADGSTPTDAIVKEFL 262
Query: 122 SILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
I + A + +H K+G RTG A Y+ E +
Sbjct: 263 DICENAEGAIAVHSKAGLGRTGTLIACYIMKHYRMTAAETIAWV 306
>1zcl_A Protein tyrosine phosphatase 4A1; PRL-1 PTP4A dual specific
phosphatase, hydrolase; 2.90A {Rattus norvegicus} PDB:
1x24_A
Length = 180
Score = 48.8 bits (116), Expect = 9e-07
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 61 TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQL 120
FIE LKK YG+ +I+ + ++ + GI ++++P +++ +
Sbjct: 52 KFIEELKK-YGVTTIVRV---CEATYDTTLVEKE---GIHVLDWPFDDGAPPSNQIVDDW 104
Query: 121 ISILKT-----APKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
+S++K + +H +G R + A+ L I E+A + +
Sbjct: 105 LSLVKIKFREEPGCCIAVHSVAGLGRAPVLVALAL-IEGGMKYEDAVQFI 153
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 46.7 bits (110), Expect = 4e-06
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 41 TQNFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQ 100
+Q + V P IY I L+K GI +LN D GI
Sbjct: 25 SQPCNEVTPR-IYVGNASVAQDIPKLQK-LGITHVLNAAEGRSFMHVNTNANFYKDSGIT 82
Query: 101 LINFPLSATRELN-----DEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAH 155
+ + T+E N + + L +L+HC+ G R+ YL +
Sbjct: 83 YLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQK 142
Query: 156 YPKEEAHRQL 165
+ A +
Sbjct: 143 MDVKSALSIV 152
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein,
structural genomics, NPPSFA; 1.67A {Homo sapiens}
Length = 151
Score = 45.1 bits (106), Expect = 1e-05
Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 5/124 (4%)
Query: 45 HA--VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAAND-LGIQL 101
HA V P +Y Q L++ GI +LN + E LG++
Sbjct: 1 HADEVWPG-LYLGDQDMANNRRELRR-LGITHVLNASHSRWRGTPEAYEGLGIRYLGVEA 58
Query: 102 INFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEA 161
+ P + L +L+HC G R+ YL + H EA
Sbjct: 59 HDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVGVSRSATLVLAYLMLYHHLTLVEA 118
Query: 162 HRQL 165
+++
Sbjct: 119 IKKV 122
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine
phosphatase IVA1...; structural genomics, NYSGXRC,
unknown function, PSI; 1.90A {Homo sapiens} SCOP:
c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Length = 159
Score = 42.3 bits (99), Expect = 8e-05
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 61 TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQL 120
FIE LKK YG+ +I+ + ++ E+E GI ++++P +++ +
Sbjct: 31 KFIEELKK-YGVTTIVRVCEATYDTTLVEKE------GIHVLDWPFDDGAPPSNQIVDDW 83
Query: 121 ISILKT-----APKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSM 167
+S++K + +HC +G R + A+ L I E+A + +
Sbjct: 84 LSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALAL-IEGGMKYEDAVQFIRQ 134
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 42.1 bits (98), Expect = 9e-05
Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 54/160 (33%)
Query: 46 AVVPHEIYRSAQPNGTFIEYLKK--EYGIKSILNLRGKLPESWHKEEEKAANDLGIQLIN 103
A+ P ++RS++ + GI + +LR E + + + + + L+
Sbjct: 41 ALRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSS-REVARRGPGRVPDGIDVHLLP 99
Query: 104 FPLSA--------------------------------------------------TRELN 113
FP A TR
Sbjct: 100 FPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGA 159
Query: 114 DEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIV 153
+ +++++L A +P+L HC +G DRTG A+ L V
Sbjct: 160 QRALHRVVTLLA-AGRPVLTHCFAGKDRTGFVVALVLEAV 198
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 41.3 bits (96), Expect = 1e-04
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 9/127 (7%)
Query: 44 FHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLIN 103
V P ++ L + GI ++N K + ++
Sbjct: 46 IDEVWPS-LFLGDAYAARDKSKLIQ-LGITHVVNAAAGKF--QVDTGAKFYRGMSLEYYG 101
Query: 104 FPLSATRELN-----DEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPK 158
+ + + + L +L+HC G R+ +L I +
Sbjct: 102 IEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMGVSRSATLVLAFLMIYENMTL 161
Query: 159 EEAHRQL 165
EA + +
Sbjct: 162 VEAIQTV 168
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase,
dual specificity phosphatase; 1.88A {Homo sapiens}
Length = 190
Score = 40.5 bits (94), Expect = 3e-04
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 7/119 (5%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
+ ++ + L+ GI I+N ++P + E + + L + P
Sbjct: 29 ITSS-LFLGRGSVASNRHLLQA-RGITCIVNATIEIPNFNWPQFEY----VKVPLADMPH 82
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
+ + + I + L+HC +G R+ YL + EA+ +
Sbjct: 83 APIGLY-FDTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWV 140
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 39.9 bits (93), Expect = 4e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 88 KEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTAPKP--LLIHCKSGADRTGLA 145
+ EE+ G L +D + + + K+ PK L HC +G RT +
Sbjct: 190 RTEEEMVKQHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIF 249
Query: 146 SAVYLYIVAHYPKEEAH 162
++ I+ +
Sbjct: 250 MVMHD-ILKNAKDVSFD 265
Score = 37.2 bits (86), Expect = 0.002
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 90 EEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTAPKP--LLIHCKSGADRTGLASA 147
E++ G+ + + I + I+ +T P L HC++GA RT A
Sbjct: 490 EQQLVEKNGLHYYRIAATDHIWPSAANIDEFINFTRTMPANAWLHFHCQAGAGRTTAYMA 549
Query: 148 VY 149
+Y
Sbjct: 550 MY 551
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics,
phosphatase, PSI-2, protein structure initiative; 1.60A
{Homo sapiens}
Length = 154
Score = 40.1 bits (93), Expect = 4e-04
Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 8/102 (7%)
Query: 68 KEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL----SATRELNDEQIKQLISI 123
+++GI I+ +R + ++ K + + + + K+ I
Sbjct: 30 QKHGITHIICIRQNIEANFIKPNFQQ----LFRYLVLDIADNPVENIIRFFPMTKEFIDG 85
Query: 124 LKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
+L+H +G R+ Y+ +A +
Sbjct: 86 SLQMGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYV 127
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase,
structural genomics, PSI-2, protein structure
initiative; 1.83A {Homo sapiens} PDB: 1mkp_A
Length = 155
Score = 39.4 bits (91), Expect = 7e-04
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
++P+ +Y + + +E L K GI+ ILN+ LP + K + + I + +
Sbjct: 9 ILPN-LYLGSARDSANLESLAK-LGIRYILNVTPNLPNFFEKNGDF--HYKQIPISDHW- 63
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
S + + I + +L+H +G R+ + YL H +A+ +
Sbjct: 64 SQNLSRFFPEAIEFIDEALSQNCGVLVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLV 122
>2c46_A MRNA capping enzyme; guanylyltransferase, phosphatase, transferase,
alternative splicing, hydrolase, mRNA processing,
multifunctional enzyme; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 38.8 bits (90), Expect = 8e-04
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 19/121 (15%)
Query: 62 FIEYLKKEYG-IKSILNL----RGKLPESWHKEEEKAANDLGIQLINFPLSATREL-NDE 115
YLK + +++L R KE GI+ I E E
Sbjct: 72 LSNYLKSLKVKMGLLVDLTNTSRFYDRNDIEKE--------GIKYIKLQCKGHGECPTTE 123
Query: 116 QIKQLISIL-----KTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYG 170
+ I + + P+ + +HC G +RTG +L + E A +
Sbjct: 124 NTETFIRLCERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARP 183
Query: 171 H 171
Sbjct: 184 P 184
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 38.2 bits (88), Expect = 0.001
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
++P +Y + + + E+L I ++LN+ + E+ I + +
Sbjct: 9 ILPF-LYLGSAYHASKCEFLAN-LHITALLNVSRRTSEACMTHLHY----KWIPVEDSHT 62
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
+ E I + + + K +L+H ++G R+ YL + +EA +
Sbjct: 63 ADISSHFQEAIDFIDCVREKGGK-VLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYI 120
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase;
2.10A {Homo sapiens}
Length = 145
Score = 37.8 bits (87), Expect = 0.002
Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
+ H ++ ++ N + +E L+ G++ ILN+ ++ + E I++ +
Sbjct: 7 IFEH-VFLGSEWNASNLEDLQN-RGVRYILNVTREIDNFFPGVFEY----HNIRVYDEEA 60
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
+ + IS K L+H K G R+ Y + + A+ +
Sbjct: 61 TDLLA-YWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYV 118
>2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase,
hypothetical protein; 2.7A {Saccharomyces cerevisiae}
PDB: 2j17_A* 2j16_B
Length = 182
Score = 37.3 bits (86), Expect = 0.002
Identities = 16/121 (13%), Positives = 43/121 (35%), Gaps = 15/121 (12%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
V+P +IY ++P +K+ ++N+ + + ++ ++
Sbjct: 47 VLPEKIYLYSEPT------VKELLPFDVVINVAEEANDLRM-------QVPAVEYHHYRW 93
Query: 107 SATRELND--EQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQ 164
++ + +I T + +LIH + G R+ Y+ + ++
Sbjct: 94 EHDSQIALDLPSLTSIIHAATTKREKILIHAQCGLSRSATLIIAYIMKYHNLSLRHSYDL 153
Query: 165 L 165
L
Sbjct: 154 L 154
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 35.9 bits (82), Expect = 0.007
Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 11/121 (9%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
++ + I+ + N ++Y+ I SIL + ++P + + I ++
Sbjct: 13 IIQY-IHLGSFLNAHNVDYIHN-NNISSILLVGIEVPSLFK-------DQCDILRLDIVS 63
Query: 107 SATRELND--EQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQ 164
+L D + I + +LI +G ++ +L A +
Sbjct: 64 EEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNK 123
Query: 165 L 165
+
Sbjct: 124 V 124
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 35.2 bits (80), Expect = 0.012
Identities = 20/123 (16%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 43 NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
F V P ++ E L + GI +N+ + P + L + +
Sbjct: 11 PFARVAPA-LFIGNARAAGATELLVR-AGITLCVNVSRQQPGPRAPGVAE----LRVPVF 64
Query: 103 NFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAH 162
+ P + + E + L++CK+G R+ YL + + A
Sbjct: 65 DDP-AEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLDRAF 123
Query: 163 RQL 165
+ +
Sbjct: 124 QMV 126
>3cm3_A Late protein H1, dual specificity protein phosphatase;
dual-specificity phosphatase, VH1, hydrolase; 1.32A
{Vaccinia virus} PDB: 2rf6_A 2p4d_A
Length = 176
Score = 34.9 bits (80), Expect = 0.013
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 68 KEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELND----EQIKQLISI 123
E K +LNL ++ + I +I+ PL + + + +S
Sbjct: 53 SEVKFKYVLNL---------TMDKYTLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSK 103
Query: 124 LKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQ 164
+P+L+H +G +R+G YL +
Sbjct: 104 CDQRNEPVLVHSAAGVNRSGAMILAYLMSKNKESLPMLYFL 144
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase,
nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Length = 144
Score = 34.7 bits (79), Expect = 0.016
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
++P +Y + + + L GI ++LN+ P + E I + +
Sbjct: 7 ILPF-LYLGSAYHAARRDMLDA-LGITALLNVSSDCPNHF----EGHYQYKCIPVEDNHK 60
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
+ E I+ + ++ + L +H ++G R+ YL + EEA +
Sbjct: 61 ADISSWFMEAIEYIDAVKDCRGRVL-VHSQAGISRSATICLAYLMMKKRVRLEEAFEFV 118
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A
{Homo sapiens}
Length = 149
Score = 34.4 bits (78), Expect = 0.020
Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
++P ++ + + ++ +++ I ++N+ LP +++ N + +
Sbjct: 7 ILPF-LFLGNEQDAQDLDTMQR-LNIGYVINVTTHLPLYHYEKGLF--NYKRLPATDSN- 61
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
E+ + I K LLIHC++G R+ YL +A++ +
Sbjct: 62 KQNLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFV 120
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 34.2 bits (78), Expect = 0.020
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 61 TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQL 120
T + +K+ I +I++L +A G+ + + +++
Sbjct: 45 TAEQIVKQNPSIGAIIDLTNTSKYYDGVHFLRA----GLLYKKIQVPGQTLPPESIVQEF 100
Query: 121 ISIL-----KTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSM 167
I + K + +HC G +RTG YL +EA +
Sbjct: 101 IDTVKEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIDRFEK 152
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 33.5 bits (76), Expect = 0.034
Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 7/119 (5%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
+ +Y S L I ++N+ ++ + +++ + + + + + P
Sbjct: 23 ITKS-LYISNGVAANNKLMLSS-NQITMVINVSVEVVNTLYEDIQY----MQVPVADSPN 76
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
S + D + S+ + L+HC +G R+ YL +AH
Sbjct: 77 SRLCDFFDPIADHIHSVEMKQGR-TLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWT 134
>2q05_A Late protein H1, dual specificity protein phosphatase; structural
genomics, APC7320, PSI-2, protein structure initiative;
HET: MSE; 2.57A {Vaccinia virus WR}
Length = 195
Score = 32.7 bits (74), Expect = 0.067
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 68 KEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTA 127
E K +LNL N + I L++ + + D+ L +
Sbjct: 70 SEVKFKYVLNLTMDKY----TLPNSNINIIHIPLVDDTTTDISKYFDDVTAFLSKCDQRN 125
Query: 128 PKPLLIHCKSGADRTGLASAVYL 150
+L+HC +G +R+G YL
Sbjct: 126 EP-VLVHCAAGVNRSGAMILAYL 147
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded
B-sheet, hydrolase; 2.80A {Homo sapiens}
Length = 177
Score = 32.4 bits (73), Expect = 0.072
Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
++P ++ + + ++ +++ I ++N+ LP +++ L N
Sbjct: 11 ILPF-LFLGNEQDAQDLDTMQR-LNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSN--- 65
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
E+ + I K LLIHC++G R+ YL +A++ +
Sbjct: 66 KQNLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFV 124
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus VF5} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 30.3 bits (68), Expect = 0.36
Identities = 10/75 (13%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 61 TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLG------IQLINFPLSATRELND 114
F +++ +L ++ E+ L ++ L+ L D
Sbjct: 209 FFRLCMERSTHKS-SKKAWEELLKNRELREKAFLVVLEKGYTYPATILKPVLTYE-NLED 266
Query: 115 EQIKQLISILKTAPK 129
E+ ++ I++ P
Sbjct: 267 EERNEVADIVRMEPG 281
>2nlk_A Protein tyrosine phosphatase, receptor type, G variant (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1249, HPTPG, RPTPG; 2.40A {Homo sapiens}
Length = 627
Score = 30.1 bits (67), Expect = 0.40
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 105 PLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTG 143
P+S+T EL I + T P ++H + GA G
Sbjct: 500 PISSTFEL----INVIKEEALTRDGPTIVHDEYGAVSAG 534
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 29.8 bits (66), Expect = 0.44
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 8/123 (6%)
Query: 43 NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
+ ++P +Y + E L K + IL++ +
Sbjct: 6 GMNKILPG-LYIGNFKDARDAEQLSK-NKVTHILSVHDSARPMLEGVKYL------CIPA 57
Query: 103 NFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAH 162
S + ++ + I + + L+HC +G R+ Y+ V + E+A
Sbjct: 58 ADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDAL 117
Query: 163 RQL 165
+
Sbjct: 118 HTV 120
>3n0a_A Tyrosine-protein phosphatase auxilin; phosphatase-like domain, C2
domain, hydrolase; 2.20A {Bos taurus}
Length = 361
Score = 29.3 bits (65), Expect = 0.58
Identities = 11/104 (10%), Positives = 27/104 (25%), Gaps = 15/104 (14%)
Query: 63 IEYLKKEYGIK-SILNLRGKLPESWHKEEEKAANDLGIQLINFPL----SATRELNDEQI 117
+L + ++ NL K + ++ + +
Sbjct: 53 RSFLDSRHLDHYTVYNLSPKSYRT---------AKFHSRVSECSWPIRQAPSLHNLFAVC 103
Query: 118 KQLISILKTAPK-PLLIHCKSGADRTGLASAVYLYIVAHYPKEE 160
+ + + L PK ++HC G + + Y
Sbjct: 104 RNMYNWLLQNPKNVCVVHCLDGRAASSILVGAMFIFCNLYSTPG 147
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 29.1 bits (64), Expect = 0.78
Identities = 11/86 (12%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 88 KEEEKAANDLGIQLINF--PLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLA 145
+E A+ + +I + P++ + + ++Q + +T +L+ + +T LA
Sbjct: 22 TNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 81
Query: 146 SAVYLYIVAHYPKEEAHRQLSMLYGH 171
+ + + K + ++
Sbjct: 82 AKIAEESNFPFIKICSPDKMIGFSET 107
>3eol_A Isocitrate lyase; seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3e5b_A
Length = 433
Score = 28.4 bits (63), Expect = 1.2
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 67 KKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELN 113
Y N + L ++ + ++ +G + L+ +LN
Sbjct: 309 LLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHQLN 355
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 28.0 bits (61), Expect = 1.6
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 62 FIEYLKKEYGIKSILNLRGKLPE-----SWHKEEEKAANDLGIQLINFPLSATRELNDEQ 116
+E LK E G+ + E L ++++ P + D+
Sbjct: 315 VMEVLKAE-GVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT--AIGDDD 371
Query: 117 IKQLISILKTA 127
I+++ +L+
Sbjct: 372 IRRVADLLRLC 382
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilon; transmembrane,
phosphoprotein, alternative splicing, consortium,
structural, glycoprotein, SGC; 3.20A {Homo sapiens}
Length = 599
Score = 27.8 bits (61), Expect = 1.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 125 KTAPKPLLIHCKSGADRTG 143
+T P+ +HC +GA RTG
Sbjct: 515 QTGNHPITVHCSAGAGRTG 533
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 27.8 bits (61), Expect = 1.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 115 EQIKQLISILKTAPKPLLIHCKSGADRTG 143
Q PLLIHC+ G+ +TG
Sbjct: 526 PQKNSSEGNKHHKSTPLLIHCRDGSQQTG 554
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 27.3 bits (60), Expect = 2.4
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFPVL--KTITMDITFEKITQLYPNN--VSKGDT 200
I+A K E R L + G + ++ L + GD
Sbjct: 458 IIACTAKPEVARGLKIARGVKTYVLNSIHHSEVVISNALALAKEESLIESGDF 510
>1d5r_A Phosphoinositide phosphotase PTEN; C2 domain, phosphotidylinositol,
hydrolase; HET: TLA; 2.10A {Homo sapiens} SCOP: b.7.1.1
c.45.1.1
Length = 324
Score = 27.3 bits (60), Expect = 2.7
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 63 IEYLKKEYGIK-SILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLI 121
+ +L ++ I NL E ++ +P E IK
Sbjct: 48 VRFLDSKHKNHYKIYNLCA--------ERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFC 99
Query: 122 SILKTAPK-----PLLIHCKSGADRTGLASAVYLYIVAHYPKEE 160
L IHCK+G RTG+ YL + K +
Sbjct: 100 EDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQ 143
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A*
3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A*
1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A*
Length = 550
Score = 27.1 bits (59), Expect = 2.7
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFPVLKTITMDITFEKIT 188
I+A + RQ + G FPVL + + +
Sbjct: 469 IIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDV 505
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 1xxp_A* 3blu_A* 1ypt_A* 3blt_A*
1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A* 1pa9_A* 1yts_A
Length = 306
Score = 27.0 bits (59), Expect = 2.8
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 113 NDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSML 168
N + K ++ + +IH ++G RT I A + + QLS+
Sbjct: 219 NMYESKGSSAVADDSKLRPVIHSRAGVGRTA------QLIGAMCMNDSRNSQLSVE 268
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense
mediated decay, zinc-finger, ATP-binding, polymorphism,
metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 27.1 bits (59), Expect = 3.0
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 104 FPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPK 158
F +LN Q+ + ++L LI G +T ++ + ++
Sbjct: 349 FTAQGLPDLNHSQVYAVKTVL--QRPLSLIQGPPGTGKTVTSATIVYHLARQGNG 401
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 27.1 bits (60), Expect = 3.3
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 25/77 (32%)
Query: 62 FIEYLKKEYGI-------------KSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSA 108
LK G+ ++ + + KLP +KAA Q+++ P+
Sbjct: 294 VQASLKAA-GVPTAVHYPIPLNKQPAVADEKAKLPVG-----DKAAT----QVMSLPMHP 343
Query: 109 TRELNDEQIKQLISILK 125
L+ IK + + L
Sbjct: 344 --YLDTASIKIICAALT 358
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase;
HET: BOG; 2.40A {Homo sapiens}
Length = 160
Score = 26.7 bits (58), Expect = 3.5
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
V+P +Y + ++ L + I I+++ L I + + P
Sbjct: 11 VLPG-LYLGNFIDAKDLDQLGR-NKITHIISIHESPQPLLQD-----ITYLRIPVADTPE 63
Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
++ E I + L+H +G R+ Y+ V + +
Sbjct: 64 VPIKKHFKE-CINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAI 121
>1igw_A Isocitrate lyase; beta barrel; 2.10A {Escherichia coli} SCOP:
c.1.12.7 PDB: 3i4e_A
Length = 434
Score = 26.8 bits (59), Expect = 3.8
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 69 EYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELN 113
Y N + L + ++ +D+G + L+ +
Sbjct: 315 AYNCSPSFNWQKNLDDKTIASFQQQLSDMGYKFQFITLAGIHSMW 359
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.7 bits (58), Expect = 3.8
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 17/89 (19%)
Query: 37 ITTFTQNFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKA--- 93
I T + H+ V + A PN L +Y + ++ ++ + W + E +A
Sbjct: 1226 ILTTAREHHSSVKY-----ASPN------LNMKYRKRQLVTREAQI-KDWVENELEALKL 1273
Query: 94 -ANDLGIQLIN-FPLSATRELNDEQIKQL 120
A ++ + N F L TRE+++E QL
Sbjct: 1274 EAEEIPSEDQNEFLLERTREIHNEAESQL 1302
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 26.6 bits (58), Expect = 3.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 130 PLLIHCKSGADRTG 143
P+ +HC +G RTG
Sbjct: 502 PITVHCSAGVGRTG 515
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol
endoplasmic reticulum, hydrolase, membrane,
transmembrane; 1.96A {Saccharomyces cerevisiae}
Length = 505
Score = 26.6 bits (58), Expect = 3.9
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 54 RSAQPNGTFIEYLKKEYGIKSILNLRGKLPE-----SWHKEEEKAANDLGIQLINFPLSA 108
S + K+ YG ++NL + ++ A ND I + F
Sbjct: 281 NSLDATKKHFDQQKELYGDNYLVNLVNQKGHELPVKEGYESVVHALNDPKIHYVYFDFHH 340
Query: 109 -TRELNDEQIKQLISILK 125
R++ ++K LI L+
Sbjct: 341 ECRKMQWHRVKLLIDHLE 358
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics
consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Length = 520
Score = 26.5 bits (58), Expect = 4.1
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFPVL--KTITMDITFEKITQLYPNN--VSKGDT 200
I+A + + L++ G + DI ++ GD+
Sbjct: 444 ILALSASDSTVKCLNVHRGVTCIKVGSFQGTDIVIRNAIEIAKQRNMAKVGDS 496
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1 PDB: 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 525
Score = 26.5 bits (58), Expect = 4.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 128 PKPLLIHCKSGADRTG 143
P+++HC +G RTG
Sbjct: 452 AGPVVVHCSAGIGRTG 467
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, structural
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 26.3 bits (57), Expect = 5.3
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFPVL--KTITMDITFEKITQLYPNN--VSKGDT 200
I+A E + L ++ G + D + V++G++
Sbjct: 435 ILALSASESTIKHLQVIRGVTTMQVPSFQGTDHVIRNAIVVAKERELVTEGES 487
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 26.2 bits (57), Expect = 5.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 79 RGKLPESWHKEEEKAANDLGIQLINFPLSATR---------ELNDEQIKQLISILKTAPK 129
RG L S ++ +L QL+NF + ++R +NDE I L SIL+
Sbjct: 217 RGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLSSILEKLGT 276
Query: 130 PLLIHCKSGAD 140
+I+ ++G +
Sbjct: 277 GGIIYARTGEE 287
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 26.1 bits (57), Expect = 5.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 130 PLLIHCKSGADRTG 143
P+++HC +G RTG
Sbjct: 448 PIIVHCSAGIGRTG 461
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 337
Score = 26.3 bits (57), Expect = 5.7
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 4 IKKPRKNLLIFYIKILLGVLVLCAVSLGLYFLTITTFTQ 42
++ ++F + +LL + + ++ +G Y L++ Q
Sbjct: 1 MQPDSYPKILFGLTLLLVITAVISLGIGRYSLSVPQIGQ 39
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN;
2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Length = 193
Score = 26.1 bits (56), Expect = 5.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 98 GIQLINFPLSATRELNDEQIKQLIS 122
GI++ N P +LN E I +
Sbjct: 168 GIEVFNVPKKNLNKLNWENINEFCG 192
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome,
RNA modifying enzyme, isomerase; 2.60A {Escherichia
coli}
Length = 237
Score = 25.8 bits (56), Expect = 6.8
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 98 GIQLINFPLSATRELNDEQIKQLISILKTAPKP 130
+ L PL R+L D+++ L +++ +
Sbjct: 157 NVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 189
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative
nitroreductase YDFN, structural genomics, joint center
for structural genomics, JCSG; HET: MSE FMN; 1.65A
{Bacillus subtilis}
Length = 218
Score = 25.7 bits (55), Expect = 7.9
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 8/97 (8%)
Query: 108 ATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSM 167
+ + E + ++ ++ AP S + L ++A
Sbjct: 31 SGHPITKEDLNEMFELVALAP--------SAFNLQHTKYVTVLDQDVKEKLKQAANGQYK 82
Query: 168 LYGHFPVLKTITMDITFEKITQLYPNNVSKGDTEQPM 204
+ VL + +++ +Y G +
Sbjct: 83 VVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQE 119
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 25.6 bits (56), Expect = 8.9
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 152 IVAHYPKEEAHRQLSMLYGHFPVL--KTITMDITFEKITQLYPNN--VSKGDT 200
I+A E+ QL + G P L + + D + +L + KGD
Sbjct: 396 ILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDV 448
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA
complex, S4 domain, alpha/beta protein, isomerase,
RNA-binding, rRNA processing; HET: FHU; 3.00A
{Escherichia coli}
Length = 290
Score = 25.5 bits (55), Expect = 8.9
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 98 GIQLINFPLSATRELNDEQIKQLISILKTAPKP 130
+ L PL R+L D+++ L +++ +
Sbjct: 210 NVSLSGIPLGEWRDLTDDELIDLFKLIENSSSE 242
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.321 0.138 0.399
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,724,130
Number of extensions: 75249
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 82
Length of query: 207
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 119
Effective length of database: 3,559,758
Effective search space: 423611202
Effective search space used: 423611202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)