HHsearch alignment for GI: 254780899 and conserved domain: COG0006

>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=403.60  Aligned_cols=237  Identities=27%  Similarity=0.394  Sum_probs=219.6

Q ss_pred             CCCHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77203313978853999999999999999999999999757998899999999999998598303443324445532344
Q gi|254780899|r    2 LSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSI   81 (273)
Q Consensus         2 ~~~~~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~   81 (273)
T Consensus       142 ~~~~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~G~tE~ev~a~l~~~~~~~G~~~-----~sf~~iva~G~  216 (384)
T COG0006         142 VDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEG-----PSFDTIVASGE  216 (384)
T ss_pred             ECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCEEEECC
T ss_conf             5027789998855999999999999999999999999861079979999999999999808875-----77475787654


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             64211121222200134057997876653000231112333444432103677877654322110011212210489999
Q gi|254780899|r   82 NHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQ  161 (273)
Q Consensus        82 N~~~~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~  161 (273)
T Consensus       217 n~a~pH~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~s~~~~~iy~~V~~aq~aa~~~~~pG~~~~~vd~~ar  296 (384)
T COG0006         217 NAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAAR  296 (384)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             33565678888766799989999460689811563568976999999999999999999999987279995999999999


Q ss_pred             HHHHHCCCE-ECCCCCCCCCC--CCCCCCCE-EEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCC
Q ss_conf             999862960-10475212332--21135403-653156454566451167378831114437776256468866883378
Q gi|254780899|r  162 RYAHSERYS-VVEVFCGHGIG--KSFHEKPE-ILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDR  237 (273)
Q Consensus       162 ~~~~~~g~~-~~~~~~GHgiG--l~~hE~P~-i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g  237 (273)
T Consensus       297 ~~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~------~~~~~~~L~~GMv~t~Epg~y~~-----------------g  353 (384)
T COG0006         297 QVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYL------SPGSDTTLEPGMVFSIEPGIYIP-----------------G  353 (384)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCEECCCEEEEECCCCCCC-----------------C
T ss_conf             999971467667787477578877555475435------78987330498299726556568-----------------8


Q ss_pred             CEEEEEEEEEEECCCCCEECCCCCCCCCC
Q ss_conf             71678442189847985765267988676
Q gi|254780899|r  238 SLSAQYEHTIGITKAGCEIFTLSPNNLGQ  266 (273)
Q Consensus       238 ~~~~~~Ed~vlVT~~G~E~LT~~p~~l~~  266 (273)
T Consensus       354 ~~GiRIEd~vlVte~G~e~LT~~~~~~~~  382 (384)
T COG0006         354 GGGVRIEDTVLVTEDGFEVLTRVPKELLV  382 (384)
T ss_pred             CCEEEEEEEEEECCCCCEECCCCHHHHHC
T ss_conf             63798777899858985677776266534