HHsearch alignment for GI: 254780899 and conserved domain: TIGR00495
>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545 Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein. This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=99.96 E-value=5.4e-29 Score=213.86 Aligned_cols=265 Identities=18% Similarity=0.264 Sum_probs=219.2
Q ss_pred CCCCHHHHCCCE--EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC---CCCC-CCCCCC
Q ss_conf 977203313978--8539999999999999999999999997579988999999999999985983---0344-332444
Q gi|254780899|r 1 MLSSSSRESGSI--NIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI---PATL-NYRGYK 74 (273)
Q Consensus 1 ~~~~~~~~~~~~--~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~---~~~~-~~~~f~ 74 (273)
T Consensus 1 Ms~~ee~~e~~~dy~Ls~P~vV~kYk~AG~i~n~vlk~vv~~c~~ga~v~diC~~GD~~i~e~~~k~y~~s~K~~~kGiA 80 (407)
T TIGR00495 1 MSTKEEASEKAVDYSLSNPEVVTKYKIAGEIANNVLKKVVEKCKPGAKVVDICEKGDEFIEEETAKVYKKSKKELEKGIA 80 (407)
T ss_pred CCCCCCCCHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 98520022133210157883121022346899999999998607984899602200589999987541023000115732
Q ss_pred CCCCCCCCCCCCCCCC----C---CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHH
Q ss_conf 5532344642111212----2---220013405799787665300023111233344-----443210367787765432
Q gi|254780899|r 75 KSCCTSINHVICHGIP----S---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK-----IKRAAERILQVTYESLYK 142 (273)
Q Consensus 75 ~~~~~s~N~~~~H~~p----~---d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~-----~~~~~~~l~~~~~~a~~~ 142 (273)
T Consensus 81 FPT~vSvNn~vgHfSPLkSd~eand~~Lk~GD~VKIdLG~HiDGFiA~vAhT~vig~~~~~~~tG~~ADvI~AA~~Al~a 160 (407)
T TIGR00495 81 FPTCVSVNNCVGHFSPLKSDEEANDLVLKEGDVVKIDLGCHIDGFIALVAHTIVIGVASEEPVTGRKADVIAAAHLALEA 160 (407)
T ss_pred CCCCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 47641703603326887888313344533387479813664403564150789985145876557067899999999998
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCC-EEEECCCCC---CCCCCEECCCCEEEECCEEEC
Q ss_conf 2110011212210489999999862960104752123322113540-365315645---456645116737883111443
Q gi|254780899|r 143 GIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKP-EILHFYDPL---YPSVGTFQEGMVFTIEPMLNV 218 (273)
Q Consensus 143 ~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHgiGl~~hE~P-~i~~~~~~~---~~~~~~le~GMV~aiEP~i~~ 218 (273)
T Consensus 161 AlRlvkPG~~n~~VT~~~~KvA~~Y~c~~v~G~LSHqlkr~vIDG~K~v~~~~~d~Q~~~~~~~eFee~EVYavDil~St 240 (407)
T TIGR00495 161 ALRLVKPGKTNTQVTEAIEKVADSYGCKPVEGMLSHQLKRHVIDGEKVVISNPSDSQKKEVDTVEFEENEVYAVDILVST 240 (407)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEC
T ss_conf 87404887987147889999973249846532231022224866722797368820001122266420118899999973
Q ss_pred C-CCCCEECCCC--------------------------------------------------------------CEEEE-
Q ss_conf 7-7762564688--------------------------------------------------------------66883-
Q gi|254780899|r 219 G-GSSAKVLSDG--------------------------------------------------------------WTAVT- 234 (273)
Q Consensus 219 ~-~~~~~~~~d~--------------------------------------------------------------w~~~~- 234 (273)
T Consensus 241 gP~GK~k~~~~~qttIYkk~~d~~Y~LK~kASR~~~sei~~~F~~~PF~~R~~~~ek~a~lGlvEc~~H~~L~pY~VLyd 320 (407)
T TIGR00495 241 GPEGKAKEEDERQTTIYKKDEDSTYKLKMKASRKFYSEIKKRFSAMPFTLRNFEFEKRARLGLVECVEHKLLQPYPVLYD 320 (407)
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 88975442014688543128886635355520356556752277868761456600000266345503771266243122
Q ss_pred CCCCEEEEEEEEEEECCCCCEECCCCCCCCC
Q ss_conf 3787167844218984798576526798867
Q gi|254780899|r 235 RDRSLSAQYEHTIGITKAGCEIFTLSPNNLG 265 (273)
Q Consensus 235 ~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~l~ 265 (273)
T Consensus 321 k~G~~Vaqfk~Tvll~pnG~~~l~~~~~~~~ 351 (407)
T TIGR00495 321 KDGEFVAQFKFTVLLMPNGSIRLTSSEFKED 351 (407)
T ss_pred CCCCEEEEEEEEEEECCCCCEEECCCCCCCC
T ss_conf 7998899888788853798654348888855