RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780899|ref|YP_003065312.1| methionine aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>gnl|CDD|29971 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
           known as methionyl aminopeptidase and Peptidase M.
           Catalyzes release of N-terminal amino acids,
           preferentially methionine, from peptides and
           arylamides..
          Length = 238

 Score =  329 bits (846), Expect = 5e-91
 Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)

Query: 20  LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
           +E +R A  +VA  LD L   IKPG TT+E+D    +F  E+ A PA L Y G+ KS CT
Sbjct: 1   IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60

Query: 80  SINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYES 139
           S+N V+CHGIP ++ L++GDIVN+DV   ++G+HGDS+R + VG++   A+++++VT E+
Sbjct: 61  SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120

Query: 140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYP 199
           LYKGI AVK    I DIG AI++YA    YSVV  F GHGIG+ FHE+P+I ++  P   
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPG-- 178

Query: 200 SVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTL 259
           +    + GMVFTIEPM+N+G      L DGWT VT+D SLSAQ+EHT+ IT+ G EI TL
Sbjct: 179 TGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL 238


>gnl|CDD|30374 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
           structure and biogenesis].
          Length = 255

 Score =  307 bits (787), Expect = 3e-84
 Identities = 115/257 (44%), Positives = 158/257 (61%), Gaps = 5/257 (1%)

Query: 10  GSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLN 69
             I+I TPEE+E +R A  + A+ L  +  ++KPG TT E+D+   +F  E  A PA L 
Sbjct: 1   MMISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLG 60

Query: 70  YRGYKKSCCTSINHVICHGIPSNKQ-LREGDIVNVDVTYVVNGWHGDSSRMYPVG-KIKR 127
           Y+G+    C S+N V+ HGIP +K+ L+EGDIV +DV   ++G+ GD++  + VG     
Sbjct: 61  YKGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDE 120

Query: 128 AAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEK 187
            A+R+L+ T E+LY GI AVK  A + DIG+AIQ YA S  +SVV    GHGIG+  HE+
Sbjct: 121 DAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEE 180

Query: 188 PEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLS-DGWTAVTRDRSLSAQYEHT 246
           P I ++           +EGMVF IEPM+N G         D WT VT+D SLSAQ+EHT
Sbjct: 181 PSIPNYGKDGTGVR--LKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHT 238

Query: 247 IGITKAGCEIFTLSPNN 263
           + +T+ GCEI TL P  
Sbjct: 239 VIVTEDGCEILTLRPEE 255


>gnl|CDD|37949 KOG2738, KOG2738, KOG2738, Putative methionine aminopeptidase
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 369

 Score =  280 bits (717), Expect = 3e-76
 Identities = 115/263 (43%), Positives = 156/263 (59%), Gaps = 3/263 (1%)

Query: 6   SRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIP 65
              S  I I  PE +E +R AC +    LD    +++PG TT+EID  V    +E  A P
Sbjct: 108 EISSNEIKILDPEGIEGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYP 167

Query: 66  ATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKI 125
           + LNY G+ KS CTS+N VICHGIP ++ L +GDIVN+DVT  +NG+HGD +  + VG +
Sbjct: 168 SPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNV 227

Query: 126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFH 185
              A+++++VT E L K IA VK   +  +IG  IQ++A    YSVV  +CGHGIG+ FH
Sbjct: 228 DEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFH 287

Query: 186 EKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEH 245
             P I H+      + G  + G  FTIEPM+ +G        D WTAVT D   SAQ+EH
Sbjct: 288 CAPNIPHYAKN--KAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTAVTADGKRSAQFEH 345

Query: 246 TIGITKAGCEIFTL-SPNNLGQP 267
           T+ +T+ GCEI T   PN+    
Sbjct: 346 TLLVTETGCEILTKRLPNSPWFM 368


>gnl|CDD|144226 pfam00557, Peptidase_M24, Metallopeptidase family M24.  This family
           contains metallopeptidases. It also contains
           non-peptidase homologues such as the N terminal domain
           of Spt16 which is a histone H3-H4 binding module.
          Length = 207

 Score =  171 bits (435), Expect = 2e-43
 Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 26/232 (11%)

Query: 21  ENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTS 80
           E +R A  + A  L++    I+PG T  E+   + +  +             +     + 
Sbjct: 1   ELMRKAARIAAAALEAALAAIRPGVTERELAAELEEAFLARGG----ARGPAFPPIVASG 56

Query: 81  INHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESL 140
            N  + H IPS++ L++GD+V +DV    +G+H D +R + VGK       + +   E+ 
Sbjct: 57  PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116

Query: 141 YKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFH-EKPEILHFYDPLYP 199
              IAAVK      D+  A +       Y V     GHGIG   H E P I+        
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEEGGYGVFPHGLGHGIGLDVHDEGPYIISGGSD--- 173

Query: 200 SVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK 251
                + GMVFTIEP +            GW  V        + E T+ +T+
Sbjct: 174 --RVLEPGMVFTIEPGI--------YFIPGWGGV--------RIEDTVLVTE 207


>gnl|CDD|29969 cd01066, APP_MetAP, A family including aminopeptidase P,
           aminopeptidase M, and prolidase. Also known as
           metallopeptidase family M24. This family of enzymes is
           able to cleave amido-, imido- and amidino-containing
           bonds. Members exibit relatively narrow substrate
           specificity compared to other metallo-aminopeptidases,
           suggesting they play roles in regulation of biological
           processes rather than general protein degradation..
          Length = 207

 Score =  121 bits (303), Expect = 3e-28
 Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 30/236 (12%)

Query: 20  LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
           +  +R A  +    + +    I+PG T  E+   + +        PA     G       
Sbjct: 1   IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAGPTIVGSGARTA- 59

Query: 80  SINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYES 139
                + H  P +++L+EGD+V VD+  V +G+H D +R + +G+       + +   E+
Sbjct: 60  -----LPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREA 114

Query: 140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEV-FCGHGIGKSFHEKPEILHFYDPLY 198
               +AA++     E++  A +                GHGIG   HE P +    D   
Sbjct: 115 QEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPVLKAGDD--- 171

Query: 199 PSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGC 254
                 + GMVF +EP L + G                     + E T+ +T+ G 
Sbjct: 172 ---TVLEPGMVFAVEPGLYLPG-----------------GGGVRIEDTVLVTEDGP 207


>gnl|CDD|30356 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
           metabolism].
          Length = 384

 Score =  119 bits (298), Expect = 1e-27
 Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 38/258 (14%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTTT----EEIDDFVLKFGMENNAIPATLN 69
           I +P E+  IR A  +    L++    I+PG T      E++  + K G E  +      
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTI-- 211

Query: 70  YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129
                    +  N  + H  PS+++LR+GD+V +D+  V NG+  D +R +P+GK     
Sbjct: 212 -------VASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQ 264

Query: 130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEV-FCGHGIGK--SFHE 186
             I +   E+    IAA++      ++  A ++      Y +  +   GHG+G     HE
Sbjct: 265 REIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHE 324

Query: 187 KPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHT 246
            P+ L        S  T + GMVF+IEP +            G   V          E T
Sbjct: 325 HPQYLS-----PGSDTTLEPGMVFSIEPGI---------YIPGGGGVR--------IEDT 362

Query: 247 IGITKAGCEIFTLSPNNL 264
           + +T+ G E+ T  P  L
Sbjct: 363 VLVTEDGFEVLTRVPKEL 380


>gnl|CDD|29977 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
           members of this subfamily presumably catalyse hydrolysis
           of Xaa-Pro dipeptides and/or release of any N-terminal
           amino acid, including proline, that is linked with
           proline..
          Length = 208

 Score =  101 bits (253), Expect = 3e-22
 Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 24/202 (11%)

Query: 20  LENIRSACNVVARCLDSLTPIIKPGTTTEE----IDDFVLKFGMENNAIPATLNYRGYKK 75
           +E +R A  +  +  + L   IKPG T  E    ++ F+ K G E  +            
Sbjct: 1   IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDT--------- 51

Query: 76  SCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQV 135
              +  N  + HG+PS++++ EGD+V +D   + +G+  D +R   VG+     + I ++
Sbjct: 52  IVASGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEI 111

Query: 136 TYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFC---GHGIGKSFHEKPEILH 192
             E+    I AVK     +++ KA +       Y   E F    GHG+G   HE P I  
Sbjct: 112 VLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYISP 169

Query: 193 FYDPLYPSVGTFQEGMVFTIEP 214
             D         +EGMVFTIEP
Sbjct: 170 GSD------DVLEEGMVFTIEP 185


>gnl|CDD|29973 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
           known as methionyl aminopeptidase and peptidase M.
           Catalyzes release of N-terminal amino acids,
           preferentially methionine, from peptides and
           arylamides..
          Length = 291

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 18/199 (9%)

Query: 20  LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
           LE  R A  +  +       +IKPG T  EI +FV     E  A PA             
Sbjct: 1   LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPAF--------PVNL 52

Query: 80  SINHVICHGIPS---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVT 136
           SIN    H  P+   +  L+EGD+V +D    V+G+  DS+            + +L+  
Sbjct: 53  SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAA 109

Query: 137 YESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGK-SFHEKPEILHFYD 195
            E+L   I     +  + +IG+AI+    S  +  +    GH I +   H    I +   
Sbjct: 110 KEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKG 169

Query: 196 PLYPSVGTFQEGMVFTIEP 214
                    +EG V+ IEP
Sbjct: 170 ---GEGTRLEEGDVYAIEP 185


>gnl|CDD|29972 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
           dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
           imidodipeptidase, peptidase D, gamma-peptidase.
           Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
           aminoacyl-hydroxyproline analogs. No action on Pro-Pro..
          Length = 243

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 30/215 (13%)

Query: 20  LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
           +E +R AC++ A    +     +PG +  E++           A  A      Y      
Sbjct: 1   IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA------YSYIVAA 54

Query: 80  SINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYE 138
             N  I H + +++ L++GD+V +D      G+  D +R +PV GK       + +    
Sbjct: 55  GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114

Query: 139 SLYKGIAAVKLNANIEDIGKAIQRYAH---------------SERYSVVEVFC----GHG 179
           +    IAA K   + EDI     R                           F     GH 
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174

Query: 180 IGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEP 214
           +G   H+       Y          + GMV TIEP
Sbjct: 175 LGLDVHDVGG----YLRYLRRARPLEPGMVITIEP 205


>gnl|CDD|37625 KOG2414, KOG2414, KOG2414, Putative Xaa-Pro aminopeptidase [Amino
           acid transport and metabolism].
          Length = 488

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 60/273 (21%), Positives = 99/273 (36%), Gaps = 58/273 (21%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGY 73
           I +P ELE +R ACN+ ++                    F  +      A+ A L Y   
Sbjct: 228 IKSPAELELMREACNIASQTFSETM--------------FGSRDFHNEAALSALLEYECR 273

Query: 74  KKSC---------CTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK 124
           ++               N    H + +N+ L++ ++V VD    + G+  D +R +P+  
Sbjct: 274 RRGADRLAYPPVVAGGKNANTIHYVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISG 333

Query: 125 IKRAAER-----ILQVTYE--SLYKGIAAVKLNA----NIEDIGKAIQ----RYAHSERY 169
               A+R     +LQV  E     K      L+     + E +G+ ++    R    E  
Sbjct: 334 KFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEM 393

Query: 170 SVVEVFC----GHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKV 225
              E  C    GH +G   H+ P +     PL P       GMV TIEP + +       
Sbjct: 394 IQAEKLCPHHVGHYLGMDVHDCPTV-SRDIPLQP-------GMVITIEPGVYIPED---- 441

Query: 226 LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFT 258
                      R +  + E  + I + G E+ T
Sbjct: 442 ----DDPPEEFRGIGIRIEDDVAIGEDGPEVLT 470


>gnl|CDD|37987 KOG2776, KOG2776, KOG2776, Metallopeptidase [General function
           prediction only].
          Length = 398

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 14/174 (8%)

Query: 13  NIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI---PATLN 69
            I     +   + A  +V + L S+  + +PG +  EI +      +E            
Sbjct: 14  TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDF 73

Query: 70  YRGYKKSCCTSINHVICHGIP----SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKI 125
            +G       S+N+ +CH  P    ++  L+EGD+V +D+   ++G+    +    VG  
Sbjct: 74  EKGIAFPTSISVNNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPA 133

Query: 126 K------RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVE 173
                  R A+ I    + +    +  +K       + +AI + A S     VE
Sbjct: 134 PDTPVTGRKADVIA-AAHLAAEAALRLLKPGNTNTQVTRAIVKTAASYGCKPVE 186


>gnl|CDD|37986 KOG2775, KOG2775, KOG2775, Metallopeptidase [General function
           prediction only].
          Length = 397

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 25/195 (12%)

Query: 4   SSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTT----TEEIDDFVLKFGM 59
           ++  E   +     +  +++R A     +    +  IIKPG T     E I++   K  +
Sbjct: 69  TTDEEKRELERTESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLIL 128

Query: 60  ENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQ---LREGDIVNVDVTYVVNGWHGDS 116
           EN  + A +   G+   C  S+NH   H  P+      L+  D++ +D    ++G   DS
Sbjct: 129 EN-GLNAGI---GFPTGC--SLNHCAAHYTPNAGDKTVLKYDDVMKIDFGTHIDGRIIDS 182

Query: 117 SRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYA-------HSERY 169
           +  + V       + +L    E+   GI    ++  + DIG+AIQ          + + Y
Sbjct: 183 A--FTVA-FNPKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESYEVEINGKTY 239

Query: 170 SV--VEVFCGHGIGK 182
            V  +    GH I +
Sbjct: 240 QVKPIRNLNGHSIAQ 254


>gnl|CDD|37948 KOG2737, KOG2737, KOG2737, Putative metallopeptidase [General
           function prediction only].
          Length = 492

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 56/294 (19%), Positives = 109/294 (37%), Gaps = 56/294 (19%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGY 73
           I +  E+E IR A  + +     +   ++PG    +++   L              +  Y
Sbjct: 185 IKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGG----CRHLSY 240

Query: 74  KKSCCTSINHVICH----GIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRA 128
              C +  N  + H    G P+++ +++GD+   D+    + +  D +  +PV GK    
Sbjct: 241 TCICASGDNSAVLHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTAD 300

Query: 129 AERILQVTYESLYKGIAAVKLNANIEDIGK-----AIQRYAHSERYS----------VVE 173
            + +     ++    + A+K      D+ K      ++  A                +  
Sbjct: 301 QKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGA 360

Query: 174 VFCGHG----IGKSFHE----KPEILHFYDPLYPSVGT---FQEGMVFTIEP-------M 215
           VF  HG    +G   H+       +    +P   S+ T    +EGMV T+EP       +
Sbjct: 361 VFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFL 420

Query: 216 LNVGGSSAKVLSDGWTAVTRDRSLSAQY--------EHTIGITKAGCEIFTLSP 261
           L+      + L+D   A   +R +  ++        E  + +TK+G E  T  P
Sbjct: 421 LD------EALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKSGIENLTCVP 468


>gnl|CDD|73244 cd01089, PA2G4-like, Related to aminopepdidase M, this family
           contains proliferation-associated protein 2G4. Family
           members have been implicated in cell cycle control..
          Length = 228

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 24/168 (14%)

Query: 24  RSACNVVARCLDSLTPIIKPGTTTEEI----DDFVLK-----FGMENNAIPATLNYRGYK 74
           ++A  +  + L  +  +  PG    ++    D  +L+     +  E          +G  
Sbjct: 5   KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKK------LEKGIA 58

Query: 75  KSCCTSINHVICHGIP----SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG-----KI 125
              C S+N+ +CH  P    +   L++GD+V +D+   ++G+    +    VG      +
Sbjct: 59  FPTCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPV 118

Query: 126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVE 173
                 ++   + +L   +  ++      DI +AIQ+       + VE
Sbjct: 119 TGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVE 166


>gnl|CDD|29975 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
           Hydrolyzes creatine to sarcosine and urea..
          Length = 228

 Score = 34.6 bits (79), Expect = 0.028
 Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 12/147 (8%)

Query: 79  TSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYE 138
           + IN    H   +N++++ GDI++++   ++ G++    R   + ++  A  +I +    
Sbjct: 61  SGINTDGAHNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVA 120

Query: 139 SLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYD--- 195
              +G+  +K  A  +DI   +              F   G G SF     + H+Y    
Sbjct: 121 VHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTF---GYGHSFGV---LSHYYGREA 174

Query: 196 --PLYPSVGTFQE-GMVFTIEPMLNVG 219
              L   + T  E GMV ++EPM+ + 
Sbjct: 175 GLELREDIDTVLEPGMVVSMEPMIMLP 201


>gnl|CDD|29970 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
           as X-Pro aminopeptidase, proline aminopeptidase,
           aminopeptidase P, and aminoacylproline aminopeptidase.
           Catalyses release of any N-terminal amino acid,
           including proline, that is linked with proline, even
           from a dipeptide or tripeptide..
          Length = 224

 Score = 33.6 bits (77), Expect = 0.055
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)

Query: 177 GHGIGK--SFHEKPEILHFYDPLYPSVGTFQEGMVFTIEP 214
           GHG+G   + HE P+ +       P     + GM+ + EP
Sbjct: 161 GHGVGSFLNVHEGPQSISPAPNNVP----LKAGMILSNEP 196


>gnl|CDD|37624 KOG2413, KOG2413, KOG2413, Xaa-Pro aminopeptidase [Amino acid
           transport and metabolism].
          Length = 606

 Score = 33.7 bits (77), Expect = 0.057
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 177 GHGIGKSF---HEKPEILHFYDPLYPSVGTFQEGMVFTIEP 214
           GHG+G SF   HE P  + +    Y S    Q GMVF+IEP
Sbjct: 476 GHGVG-SFLNVHEGPIGIGY--RPYSSNFPLQAGMVFSIEP 513


>gnl|CDD|39844 KOG4645, KOG4645, KOG4645, MAPKKK (MAP kinase kinase kinase) SSK2 and
            related serine/threonine protein kinases [Signal
            transduction mechanisms].
          Length = 1509

 Score = 29.6 bits (66), Expect = 0.99
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 145  AAVKLNANIEDIGKAIQRYAHSERYSVVEVFCG 177
            +AVK+  N + +   +Q    +  Y   EV  G
Sbjct: 1380 SAVKIKNNAQTMPGELQSMMGTPMYMAPEVITG 1412


>gnl|CDD|48152 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, alpha subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 527

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 11  SINIYTPEELENIRSACNVVARCLDSLTPIIKPGT----TTEEIDDFVLKFGMENNAI 64
            + +  PE+LE IR   + + +  + +  I+  G     TT  IDD  LK+ +E  A+
Sbjct: 243 QVVVTDPEKLEKIRQRESDITK--ERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAM 298


>gnl|CDD|143979 pfam00224, PK, Pyruvate kinase, barrel domain.  This domain of the
           is actually a small beta-barrel domain nested within a
           larger TIM barrel. The active site is found in a cleft
           between the two domains.
          Length = 348

 Score = 29.2 bits (66), Expect = 1.3
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 15  YTPEELENIRSACN----VVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNY 70
           Y    ++N+R A      +VA  LD+  P I+ G   +   D  LK G +      + + 
Sbjct: 42  YHQSRIDNVREAEEKLGGLVAIALDTKGPEIRTGLFKDGKKDIELKAGDK---FLVSTDP 98

Query: 71  RGYKKSCCTSINHVICHGIPSNKQLREGDIVNVD 104
             YK +      +V    +   K +  G I+ VD
Sbjct: 99  -AYKGAGDKEKIYVDYKNLT--KDVSPGGIILVD 129


>gnl|CDD|39825 KOG4625, KOG4625, KOG4625, Notch signaling protein Neuralized, Nuez
           domain [Signal transduction mechanisms].
          Length = 595

 Score = 28.5 bits (63), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 86  CHGIP-SNKQLREGDIVNVDVTYVVNGWHG 114
           C  I  SN+ LR G++  V++  +  GW G
Sbjct: 128 CDAITFSNRPLRIGELFLVEIEKIERGWSG 157


>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
           CHL12/CTF18 [Energy production and conversion,
           Replication, recombination and repair].
          Length = 877

 Score = 27.7 bits (61), Expect = 3.5
 Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 30/197 (15%)

Query: 13  NIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLN--- 69
           ++Y P  L  +R    ++A                E +++   +  M   A    LN   
Sbjct: 447 DLYAPA-LRPLRPFAEIIA------FVPPSQSRLVERLNEICHRENM--RADSKALNALC 497

Query: 70  --YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIK- 126
              +   +SC  ++  +      SN   R+  I    +     G   +S  ++   K   
Sbjct: 498 ELTQNDIRSCINTLQFL-----ASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIF 552

Query: 127 --RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSF 184
             R  +R  +   E LY  +  V+L+ N E + +         +YS        GIGK  
Sbjct: 553 QLRKKDRH-RSIDEQLYGLLNQVELHGNSERVLQGCFSIFLRLKYS------DLGIGK-P 604

Query: 185 HEKPEILHFYDPLYPSV 201
               + L F+D LY S+
Sbjct: 605 ANASDWLFFHDLLYQSM 621


>gnl|CDD|144974 pfam01579, DUF19, Domain of unknown function DUF19.  This
          presumed domain has no known function. It is found in
          one or two copies in several Caenorhabditis elegans
          proteins. It is roughly 130 amino acids long. The
          domain contains 12 conserved cysteines which suggests
          that the domain is an extracellular domain and that
          these cysteines from six intradomain disulphide
          bridges. The GO annotation for this protein indicates
          that it has a function in nematode larval development
          and has a positive regulation of growth rate.
          Length = 159

 Score = 27.4 bits (61), Expect = 4.7
 Identities = 5/31 (16%), Positives = 16/31 (51%)

Query: 8  ESGSINIYTPEELENIRSACNVVARCLDSLT 38
          +   +++   +EL+  + +C+    C ++L 
Sbjct: 22 KMDELDMPNKDELKKFKKSCDSFKSCFETLK 52


>gnl|CDD|30411 COG0062, COG0062, Uncharacterized conserved protein [Function
           unknown].
          Length = 203

 Score = 27.2 bits (60), Expect = 4.9
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 125 IKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG 179
                  I  +  E+L   +  +  NA    + +AI R     R   V V CG G
Sbjct: 6   SAAEMMAIDDLNAEALGLPLDILMENAG-LAVARAILREYPLGRARRVLVLCGPG 59


>gnl|CDD|146808 pfam04361, DUF494, Protein of unknown function (DUF494).  Members
          of this family of uncharacterized proteins are often
          named Smg.
          Length = 155

 Score = 26.8 bits (60), Expect = 7.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 6  SRESGSINIYTPEELENIRSAC 27
          +    SI IYT EE E + + C
Sbjct: 62 AASDSSIRIYTDEEQEKLDTEC 83


>gnl|CDD|34759 COG5158, SEC1, Proteins involved in synaptic transmission and
           general secretion, Sec1 family [Intracellular
           trafficking and secretion].
          Length = 582

 Score = 26.4 bits (58), Expect = 7.7
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 1   MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME 60
            LS   R   SIN         +R    ++ R LD +TP++   T    + D     G+ 
Sbjct: 195 KLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLHQWTYQAMLHDL---LGIN 251

Query: 61  NNAIP 65
           NN + 
Sbjct: 252 NNIVT 256


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0781    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,273,519
Number of extensions: 168339
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 29
Length of query: 273
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,275,709
Effective search space: 773903329
Effective search space used: 773903329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)