RPSBLAST alignment of GI: 254780899 and protein with PDBid: 3cb6
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H3/H4 chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444
Score = 166 bits (422), Expect = 4e-42
Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 33/271 (12%)
Query: 14 IYTPEELENIRSACNVVARCL-----DSLTPIIKPGT--TTEEIDDFVLKF--------- 57
I +EL NI+ A V + D L+ I G T + D +
Sbjct: 177 IKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLIDNEAFFQT 236
Query: 58 -GMENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDS 116
++ I Y + ++ + ++ + GD+V + + + +
Sbjct: 237 KSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGDVVLCSLGFRYKSYCSNV 296
Query: 117 SRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVF- 175
R Y ++ K + A I DI I ++R + F
Sbjct: 297 GRTYLFDPDSE-QQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGLIRAKRPDLEPNFV 355
Query: 176 --CGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAV 233
G GIG F E +++ +P Q GM + L +
Sbjct: 356 RNLGAGIGIEFRESSLLVNAKNP-----RVLQAGMTLNLSIGFG-------NLINPHPKN 403
Query: 234 TRDRSLSAQYEHTIGITKAGCEIFTLSPNNL 264
++ + + TI IT++ +FT SP
Sbjct: 404 SQSKEYALLLIDTIQITRSDPIVFTDSPKAQ 434