BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (273 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 568 bits (1463), Expect = e-164, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%) Query: 1 MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME 60 MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME Sbjct: 1 MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME 60 Query: 61 NNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMY 120 NNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMY Sbjct: 61 NNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMY 120 Query: 121 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI Sbjct: 121 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180 Query: 181 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS Sbjct: 181 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240 Query: 241 AQYEHTIGITKAGCEIFTLSPNNLGQPGISPIQ 273 AQYEHTIGITKAGCEIFTLSPNNLGQPGISPIQ Sbjct: 241 AQYEHTIGITKAGCEIFTLSPNNLGQPGISPIQ 273 >gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 351 Score = 26.9 bits (58), Expect = 0.37, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 16/31 (51%) Query: 236 DRSLSAQYEHTIGITKAGCEIFTLSPNNLGQ 266 D+ +S Y H+ G+ KAG L + L Q Sbjct: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQ 205 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 16 TPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMEN 61 +PE ++NI+ + A +DS ++ E DF++ FG N Sbjct: 406 SPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451 >gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 268 Score = 23.5 bits (49), Expect = 4.0, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 23/46 (50%) Query: 195 DPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240 +PL+PS+ Q ++ E M N SS K + + T T+ LS Sbjct: 149 NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 22.7 bits (47), Expect = 7.5, Method: Compositional matrix adjust. Identities = 8/33 (24%), Positives = 20/33 (60%) Query: 140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVV 172 +++ +AA NIE + ++R+A + +S++ Sbjct: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 174,627 Number of Sequences: 1233 Number of extensions: 7227 Number of successful extensions: 18 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 5 length of query: 273 length of database: 328,796 effective HSP length: 73 effective length of query: 200 effective length of database: 238,787 effective search space: 47757400 effective search space used: 47757400 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)