HHsearch alignment for GI: 254780900 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.37 E-value=0.16 Score=30.71 Aligned_cols=123 Identities=22% Similarity=0.267 Sum_probs=64.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
T Consensus 3 ~KkvlV~GlG~SG~s~a~~L~~~--------g~~--v~-~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vv~S-PG 68 (418)
T PRK00683 3 LQRVVVLGLGVTGKSVARFLAQK--------GVY--VI-GVDNSLEALQSCPYIHERYLEGAEEFP--EQVDLVVRS-PG 68 (418)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--------CCE--EE-EECCCHHHHHHCCHHHHHCCCCHHHCC--CCCCEEEEC-CC
T ss_conf 86699980888799999999978--------298--99-982981454546145554056233242--349899989-98
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHH------------HH---HHH-----HHHHHHHHHCCCEEEEECCCCC--HHHHH
Q ss_conf 88511357888863270288504177------------88---768-----9999875313966996056453--01318
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKAL------------IA---SHG-----KDLALLAQKNNAILNFEAAVAG--GIPII 141 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKal------------lA---~~g-----~eL~~lA~~~gv~l~~easV~g--giPii 141 (438)
T Consensus 69 i~-~~~p~~~~a~~~~i~i~s-eiel~~~~~~~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~----~~~~~GNIG~p~l 142 (418)
T PRK00683 69 IK-PYHPWVEAAVALKIPVVT-DIQLAFQTPEFQRYPSLGITGSTGKTTTILFLEHLLRTLGI----PAFAMGNIGLPIL 142 (418)
T ss_pred CC-CCCHHHHHHHHCCCCCCC-HHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHCCC----CCEEEECCCHHHH
T ss_conf 59-988999999986997540-79999742441479879997689866099999999986799----8188803465777
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780900|r 142 RILKN 146 (438)
Q Consensus 142 ~~l~~ 146 (438)
T Consensus 143 ~~~~~ 147 (418)
T PRK00683 143 DGMQQ 147 (418)
T ss_pred HHHCC
T ss_conf 64325