HHsearch alignment for GI: 254780900 and conserved domain: PRK03369
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=91.63 E-value=0.4 Score=27.92 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=47.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCC-CCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 6999982566789999999998999999739965999998268520027-8877-1022078889844889989998648
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-IDCL-RYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~-~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
T Consensus 13 k~V~V~GlG~sG~a~a~~L~~~--------G~~--v-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vV~S-P 78 (487)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--------GAR--P-TVCDDDPDALRPHAERGVATVSSSDAVQQI--ADYALVVTS-P 78 (487)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCE--E-EEEECCCHHHHHHHHCCCCEECCCCCHHHH--CCCCEEEEC-C
T ss_conf 9899991568389999999978--------697--9-999898257799986599486376226564--677889989-9
Q ss_pred CCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 8885113578888632702885
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVT 104 (438)
T Consensus 79 GI~-~~~p~l~~a~~~gi~i~~ 99 (487)
T PRK03369 79 GFP-PTAPVLAAAAAAGVPIWG 99 (487)
T ss_pred CCC-CCCHHHHHHHHCCCCEEE
T ss_conf 579-989999999988990765