HHsearch alignment for GI: 254780900 and conserved domain: pfam00742
>pfam00742 Homoserine_dh Homoserine dehydrogenase.
Probab=100.00 E-value=0 Score=460.96 Aligned_cols=179 Identities=50% Similarity=0.790 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 31899987641286203433314200000000100687788998878761761565322321178999999999998188
Q gi|254780900|r 139 PIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGI 218 (438)
Q Consensus 139 Pii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~ 218 (438)
T Consensus 1 PiI~~l~~~l~g~~I~~i~GIlNGTtNyILt~m~~~g~~f~eaL~eAq~lGyAEaDPt~Dv~G~Daa~Kl~ILa~~~fg~ 80 (179)
T pfam00742 1 PIIRTLRELLAGDRITRIEGILNGTTNYILTRMEEEGLSFEEALKEAQELGYAEADPTDDVEGLDAARKLLILARLAFGL 80 (179)
T ss_pred CCHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 90358764113184589999997808998776754599999999999983987889501015742788999999998499
Q ss_pred CCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 55531000122320476740347871985874101331367835699998641677300036654168983113100589
Q gi|254780900|r 219 DTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTM 298 (438)
Q Consensus 219 ~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~ 298 (438)
T Consensus 81 ~~~~~~v~~~GI~~i~~~di~~A~~~G~~iklva~~~~~~~~~~~~V~p~~v~~~~pla~v~g~~Nav~i~t~~~g~~~~ 160 (179)
T pfam00742 81 PVELDDVEVEGISPITLEDIEYAKELGYVIKLVAEARRDDGGVEARVGPTLVPKDHPLANVDGVDNAVLIETDRYGPLVI 160 (179)
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCEEE
T ss_conf 87889930447476899999999988798999999998199789999999984998403456983799998750586899
Q ss_pred EECCCCCCCCHHHHHHHHH
Q ss_conf 7268766610206889999
Q gi|254780900|r 299 TGPGAGGSATASAVLGDIC 317 (438)
Q Consensus 299 ~G~GAG~~~TAsaV~sDli 317 (438)
T Consensus 161 ~G~GAG~~~TAsaV~~Dil 179 (179)
T pfam00742 161 YGPGAGGEPTASAVLSDLL 179 (179)
T ss_pred EECCCCCHHHHHHHHHHHC
T ss_conf 9789890361999998609