HHsearch alignment for GI: 254780900 and conserved domain: pfam03447
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=99.90 E-value=1.7e-23 Score=184.93 Aligned_cols=113 Identities=26% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCCCCHH
Q ss_conf 2566789999999998999999739965999998268520-027887710220788898448899899986488885113
Q gi|254780900|r 11 GLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGEDYPAY 89 (438)
Q Consensus 11 G~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~ 89 (438)
T Consensus 1 G~G~VG~~v~~~l~~~~~~------~~~~l~~v~~r~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDvVVE~-~g~~-~~~ 72 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEE------IPLELVAVADRDLLSKARAALLGDEPVTLDLDDLVADPRPDVVVEC-ASSE-AVA 72 (116)
T ss_pred CCCCHHHHHHHHHHHCCCC------CCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHHHCCCCCCEEEEC-CCCH-HHH
T ss_conf 9870289999999949203------5679999984783432321246667157799999618899899988-9948-999
Q ss_pred HHHHHHHHCCEEEEEECHHHHH--HHHHHHHHHHHHCCCEEEEE
Q ss_conf 5788886327028850417788--76899998753139669960
Q gi|254780900|r 90 DAVRIALMRGCHVVTANKALIA--SHGKDLALLAQKNNAILNFE 131 (438)
Q Consensus 90 ~~i~~AL~~GkhVVTANKallA--~~g~eL~~lA~~~gv~l~~e 131 (438)
T Consensus 73 ~~~~~aL~~GkhVVTaNK~~lA~~~~~~eL~~~A~~~g~~~~fE 116 (116)
T pfam03447 73 EYVLKALKAGKHVVTASKGALADLALRERLREAAEASGVRVYFE 116 (116)
T ss_pred HHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999998799899907889678579999999999839969729