HHsearch alignment for GI: 254780901 and conserved domain: COG0052
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis].
Probab=92.34 E-value=1.1 Score=25.43 Aligned_cols=135 Identities=18% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--H--HHHHHHH----
Q ss_conf 1487999999999997799799994078861528999999999769947998078743366889--7--8988742----
Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN--P--SLMEKFI---- 146 (600)
Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~--~--~~i~~~~---- 146 (600)
T Consensus 47 ~~~l~~A~~~v~~~~~~~g~ILfVgTK----~~a~~~V~~~A~r~g---~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~ 119 (252)
T COG0052 47 LERLREAYKFLRRIAANGGKILFVGTK----KQAQEPVKEFAERTG---AYYVNGRWLGGMLTNFKTIRKSIKRLKELEK 119 (252)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECH----HHHHHHHHHHHHHHC---CCEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999997289979999520----887899999999959---9513276437424474058889999999998
Q ss_pred --HCC--------------------------------CCEEEEECCCCCCHHHHHHHHHCCCCEEE-ECCCCCCCCCCCC
Q ss_conf --026--------------------------------86899964887623455555417982799-6154476555672
Q gi|254780901|r 147 --NEG--------------------------------AQLIITVDCGSTSYDALQYATNQGIDVIV-IDHHQVKSEEIPA 191 (600)
Q Consensus 147 --~~g--------------------------------~~LiItvD~Gi~~~e~i~~a~~~GidvIV-tDHH~~~~~~p~a 191 (600)
T Consensus 120 ~~~~~~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~-~e~iAv~EA~klgIPVvAlvDTn~dpd~V--- 195 (252)
T COG0052 120 MEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPR-KEKIAVKEANKLGIPVVALVDTNCDPDGV--- 195 (252)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEECCC-HHHHHHHHHHHCCCCEEEEECCCCCCCCC---
T ss_conf 76414321007888877778999987401411126799989996881-76899999997599989984189997657---
Q ss_pred EEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHC
Q ss_conf 565237888864334430-478899999999999702
Q gi|254780901|r 192 YALVNPNRLDDLSGQGHL-CAAGVVFLVLVLIYRILR 227 (600)
Q Consensus 192 ~aivNP~~~~~~~p~~~l-~gaGvaf~l~~al~~~l~ 227 (600)
T Consensus 196 -D~~IP~---Nd---da~rsi~Li~~~lA~ai~e~r~ 225 (252)
T COG0052 196 -DYVIPG---ND---DAIRSIALIYWLLARAILEGRG 225 (252)
T ss_pred -CEEECC---CC---HHHHHHHHHHHHHHHHHHHHHC
T ss_conf -655228---87---0898999999999999998743