HHsearch alignment for GI: 254780901 and conserved domain: COG0608

>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=776.75  Aligned_cols=466  Identities=39%  Similarity=0.607  Sum_probs=434.7

Q ss_pred             CHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf             67771899556148799999999999779979999407886152899999999976994799807874336688978988
Q gi|254780901|r   64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME  143 (600)
Q Consensus        64 ~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~  143 (600)
T Consensus         9 ~~~~~-~~~~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g----~~~   83 (491)
T COG0608           9 DLSLL-LDPFLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG----AIR   83 (491)
T ss_pred             HHHCC-CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH----HHH
T ss_conf             77446-8856687599999999999966986999787885177899999999997698268974774455530----676


Q ss_pred             HHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             74202686899964887623455555417982799615447655567256523788886433443047889999999999
Q gi|254780901|r  144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY  223 (600)
Q Consensus       144 ~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~  223 (600)
T Consensus        84 ~~~~~~~~liItvD~G~~~~~~i~~~~~~g~~vIVtDHH~~~~~~p~~~~ivNP~~~~~~~~~~~lag~gv~f~l~~al~  163 (491)
T COG0608          84 KLKEEGADLIITVDNGSGSLEEIARAKELGIDVIVTDHHPPGEELPDAVAIVNPNLPGCDYPFKELAGVGVAFKLARALL  163 (491)
T ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf             55650898899977997379999998736997899789999776886526858887887876100105699999999998


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC-CCCHHHHHHHHH
Q ss_conf             9702148876407799999998775420111144411899998788775168874357898708886-424234566677
Q gi|254780901|r  224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIG  302 (600)
Q Consensus       224 ~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~-~i~~~di~f~ia  302 (600)
T Consensus       164 ~~~~-----------~~ll~l~alGtv~D~~~l~~~nr~~v~~gl~~~~~~~~~gi~~ll~~~~~~~~~~~~~~i~~~~~  232 (491)
T COG0608         164 EELR-----------KDLLDLVALGTVADVQPLTGENRILVNQGLKRLRKSGRPGIKALLKLAGRDTRQPTASDIGFIIG  232 (491)
T ss_pred             HHHH-----------HHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf             6524-----------54688988852110101651269999999998764144559999988375557885001231112


Q ss_pred             HHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf             43062333121222210020342589999999999899999999999999999998752112434750262057858122
Q gi|254780901|r  303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI  382 (600)
Q Consensus       303 PrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GV  382 (600)
T Consensus       233 P~ina~gr~~d~~~~~~L~~~~~~~~~~~~~~~~~~~n~erk~i~~~~~~~a~~~~~~~~~~--~~~~i~~~~~~~~~gv  310 (491)
T COG0608         233 PRINAAGRLGDAKAGVELLLTEDDEKAESLAEELELLNEERKKIENELLKEAIKIVEALEES--GEYVIVVSEEEWHPGV  310 (491)
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCHH
T ss_conf             54265565584668888622898055667999999858999999999999999875421245--8628998337867316


Q ss_pred             HHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCC-CCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHH
Q ss_conf             22227899884201079988637983799986489-86188888853033530115653222314642221588999999
Q gi|254780901|r  383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ  461 (600)
Q Consensus       383 iGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~-g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~  461 (600)
T Consensus       311 ~givas~l~~~~~rp~~~~~~~~~~~~kgs~rsi~~~~~~~~~l~~~~~~~~~~~~gGh~~aagl~~~~~~~~~~~~~~~  390 (491)
T COG0608         311 LGIVASRLLNAFGRPVIVLAGDAEGGAKGSARSIAKGIDLRKLLRKGRSKLLLEKFGGHAMAAGLSLKEENLEEFRGILG  390 (491)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             99999999998589648860355445654200225566599999863306666505884322855897243488999999


Q ss_pred             HHHHHHCCHHHCCCCEEEEEEECHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEEEECCCEEEEEEECCCCCEE
Q ss_conf             99986226443377147604434689799999999851846789998468427809988888479649999984998779
Q gi|254780901|r  462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL  541 (600)
Q Consensus       462 ~~~~~~~~~~~~~~~l~iD~el~~~~i~~~l~~~L~~lePFG~gNpeP~F~~~~~~i~~~r~vGk~Hlkl~l~~~~g~~i  541 (600)
T Consensus       391 ~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~p~g~g~~~p~~~~~~~~~~~~~~~g--H~~~~~~~~~~--~  466 (491)
T COG0608         391 EIASMILDKEELREKLEIDFALKDEDITLELVSALETLEPFGQGNPLPLFLRKAAEVVGGRGGG--HLKAAGANIPK--L  466 (491)
T ss_pred             HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCC--EEEEEECCCCC--C
T ss_conf             9999875520467663365433633004999998754487447995567767766662365546--37898546687--3


Q ss_pred             EEEEECCCCC
Q ss_conf             9999778787
Q gi|254780901|r  542 QAIAFRVYGT  551 (600)
Q Consensus       542 ~aI~Fn~~~~  551 (600)
T Consensus       467 ~~~~F~~~~~  476 (491)
T COG0608         467 DAIEFLKDLD  476 (491)
T ss_pred             CHHHHHHHHH
T ss_conf             0888764435